title: RayBiotech Mouse Th1/Th2/Th17 Array Q1 Quantibody Array [QAM-TH17-1-2]

status: Public on Jun 01 2022

city: North Grafton

first: Jillian

middle: M

last: Richmond

state: Massachusetts

address: 200 Westboro Road

department: Comparative Pathobiology

country: USA

institute: Tufts Cummings School of Veterinary Medicine

organism: Mus musculus

technology: antibody

distribution: custom-commercial


title: Qiagen nephrotoxicity array [PAMM-094Z]

status: Public on Jan 24 2022

city: Bern

first: Andrea

last: Karolin

address: Freiburgstrasse 15

country: Switzerland

institute: University of Bern

technology: RT-PCR

description: Mouse  nephrotoxicity PCR Array

distribution: virtual

manufacture_protocol: see manufacturer's website


title: Fullmoon Signaling Explorer Antibody Microarray

status: Public on Mar 03 2022

city: Seoul

first: Kyu-Hyun

last: Han

address: 81 Irwon-ro, Gangnam-gu

department: Division of Vascular Surgery

country: South Korea

institute: Samsung Medical Center, Sungkyunkwan University School of Medicine

organism: Homo sapiens


title: RayBiotech Human L1000 Antibody Array [AAH-BLG-2_L493 or AAH-BLG-1_L507]


title: Illumina NextSeq 500 (Leishmania amazonensis)

status: Public on Oct 31 2021

last: GEO

organism: Leishmania amazonensis

technology: high-throughput sequencing


title: Illumina NextSeq 500 (Leishmania donovani)

organism: Leishmania donovani


title: Illumina NovaSeq 6000 (Takifugu alboplumbeus)

status: Public on Oct 29 2021

organism: Takifugu alboplumbeus


title: Illumina HiSeq 2500 (Thermococcus kodakarensis KOD1)

organism: Thermococcus kodakarensis KOD1


title: miRCURY LNA miRNA panel I+II (V5, Qiagen, U.S.A.)

city: Napoli

first: Paola

last: De Candia

address: via Pansini 5

country: Italy

institute: UNIVERSITA' DEGLI STUDI DI NAPOLI FEDERICO II - Dipartimento di Medicina molecolare e Biotecnologie mediche

description: PCR assay


title: Illumina NovaSeq 6000 (Medicago sativa)

status: Public on Oct 30 2021

organism: Medicago sativa


title: NextSeq 550 (Populus tremula x Populus alba)

status: Public on Oct 28 2021

organism: Populus tremula x Populus alba


title: Illumina NovaSeq 6000 (Populus alba x Populus glandulosa)

organism: Populus alba x Populus glandulosa


title: Agilent-028416 GEVitisVinifera [ProbeName version]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Vitis vinifera

technology: in situ oligonucleotide

description: Arrays of this design have barcodes that begin with 16028416 or 2528416.

relation: Alternative to: GPL26142 (feature number version)

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: HiSeq X Ten (Escherichia coli ATCC 8739)

organism: Escherichia coli ATCC 8739


title: Illumina NextSeq 500 (Phaeodactylum tricornutum)

organism: Phaeodactylum tricornutum


title: Illumina NovaSeq 6000 (Ictalurus punctatus x Ictalurus furcatus)

status: Public on Oct 26 2021


title: nCounter XT_GX assays

status: Public on Oct 27 2021

city: Geneva

first: Natacha

last: Civic

address: Rue Michel-Servet 1

department: iGE3 Genomics Platform

institute: University of Geneva

organism: Pseudomonas aeruginosa PAO1

technology: other

description: nanostring (custom panel of 37 genes)

manufacture_protocol: NanoString Technologies®/ User Manual | nCounter® XT Assay - MAN-10023-11_nCounter_XT_Assay_User_Manual.pdf


title: Illumina HiSeq 2500 (Serratia sp. ATCC 39006)

organism: Prodigiosinella confusarubida


title: Illumina NovaSeq 6000 (Ictalurus furcatus)

organism: Ictalurus furcatus


title: Illumina NovaSeq 6000 (Ictalurus punctatus)

organism: Ictalurus punctatus


title: Illumina HiSeq 2500 (Siganus canaliculatus)

organism: Siganus canaliculatus


title: Illumina HiSeq 3000 (Cereibacter sphaeroides 2.4.1)

organism: Cereibacter sphaeroides 2.4.1


title: NextSeq 550 (Streptococcus pyogenes NZ131)

organism: Streptococcus pyogenes NZ131


title: Ion Torrent Proton (Dictyostelium discoideum)

organism: Dictyostelium discoideum


title: Illumina NovaSeq 6000 (Elaeis oleifera)

status: Public on Oct 23 2021

organism: Elaeis oleifera


title: DNBSEQ-G400 (Takifugu alboplumbeus)

status: Public on Oct 25 2021

organism: Takifugu alboplumbeus


title: Illumina NextSeq 500 (Cereibacter sphaeroides 2.4.1)


title: Illumina HiSeq 2000 (Elaeis guineensis)

status: Public on Oct 22 2021

organism: Elaeis guineensis


title: Illumina NovaSeq 6000 (Rhinichthys cataractae)

status: Public on Oct 21 2021

organism: Rhinichthys cataractae


title: Anygenes mouse cytokines and fibrosis qRT-PCR

city: PARIS

first: VIVIANE

last: AGBOGAN

state: Île-de-France

address: 160 RUE DE VAUGIRARD

country: France

institute: INEM

organism: Mus musculus

description:
qRT-PCR assay custom-made plate.
Cytokines and fibrosis genes analysis.

manufacture_protocol: See manufacturer's website.


title: MGISEQ-2000RS (Aedes aegypti)

status: Public on Oct 20 2021

organism: Aedes aegypti


title: Sequel (Plasmodium falciparum 3D7)

status: Public on Oct 19 2021

organism: Plasmodium falciparum 3D7


title: NextSeq 550 (Pseudomonas aeruginosa PA14)

organism: Pseudomonas aeruginosa PA14


title: Illumina NovaSeq 6000 (Adeno-associated virus 9)

organism: Adeno-associated virus 9


title: Illumina MiSeq (organismal metagenomes)

status: Public on Oct 18 2021

organism: organismal metagenomes


title: Illumina NovaSeq 6000 (Haloferax volcanii DS2)

organism: Haloferax volcanii DS2


title: HiSeq X Ten (Apostichopus japonicus)

organism: Apostichopus japonicus


title: MYcroarray CAT-3x20K-Acinetobacter_baumannii_AB5075 v1.0

city: Bozeman

first: Kerry

middle: S

last: Williamson

state: Montana

address: 109 Lewis Hall

department: Microbiology and Immunology

institute: Montana State University

organism: Acinetobacter baumannii AB5075

manufacturer: MYcroarray, now Daicel Arbor Biosciences

manufacture_protocol: Probes specific to Acinetobacter baumannii AB5075 genes were designed by MYcroarray, Ann Arbor, MI (now Daicel Arbor Biosciences, Ann Arbor, MI) using a proprietary version of the publicly available software OligoArray2.1. One specific probe was designed for each gene, and five technical replicates of each unique probe sequence were included on each array. 45-mer oligonucleotide probes were synthesized in situ, not spotted, on standard size (25mm x 76mm) glass slides using RotoSynth Software Version 1.0. All probes were synthesized on amine-functionalized glass substrates such that the 3' end was covalently coupled to a spacer moiety, which was covalently linked to an amine. The 5’ end of the probe sequence was pushed away from the glass by synthesizing a lawn of poly-deoxythymidine spacers. Three identical 20K arrays were synthesized on each slide so that different samples could be applied independently to each array with the use of gasket slides during hybridization to segregate the replicate arrays. Arrays also included control probes for flour-labelled spike-in control oligos for assessing hybridization and washing stringency.


title: Illumina NovaSeq 6000 (Bacillus subtilis)

organism: Bacillus subtilis


title: Illumina NovaSeq 6000 (Stentor coeruleus)

organism: Stentor coeruleus


title: Illumina Infinium Human OmniExomeExpress-8 BeadChip Array

city: Tokyo

first: Rei

last: Noguchi

state: Tokyo

department: Division of Rare Cancer Research

country: Japan

institute: National Cancer Center Research Institute

organism: Homo sapiens

technology: oligonucleotide beads

manufacture_protocol: See manufacturer's website


title: Qiagen Human RT² Profiler PCR Array, Cancer Stem Cell (PAHS-176ZC)

city: Boston

first: Naser

last: Jafari

state: MA

address: 72 East Concord

department: Hem Onc

institute: Boston University

description:
PCR assay
Human Cancer Stem Cell (CSC) PCR Array


title: Illumina HiSeq 2500 (Stentor coeruleus)


title: NextSeq 1000 (Homo sapiens)


title: Illumina HiSeq 2500 (Pinus tabuliformis)

status: Public on Oct 15 2021

organism: Pinus tabuliformis


title: Illumina HiSeq 2000 (Limosilactobacillus fermentum)

organism: Limosilactobacillus fermentum


title: HiSeq X Ten (Lactiplantibacillus plantarum)

organism: Lactiplantibacillus plantarum


title: Agilent-022830 RIKEN_AT_sORF0902 [Feature Number version]

status: Public on Oct 16 2021

city: Iizuka

first: Kousuke

last: Hanada

state: Fukuoka

address: 680-4 Kawazu

department: Department of Bioscience and Bioinformatics

institute: Kyushu Institute Technology

organism: Arabidopsis thaliana

description:
This microarray targets 34546 mRNA-like transcripts inclusing 26254 annotated coding genes (TAIR8), 6,946 coding sORFs identified at Hanada et al (Genome Research 2007 17:632-640) and 1,346 novel transcripts verified by full length cDNAs. This microarray will be useful for scientists studying gene activity associated with various plant organ functions, stages of growth, and biotic and abiotic stresses.

Arrays of this design have barcodes that begin with 16022830 or 2522830.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: BGISEQ-500 (Gracilariopsis lemaneiformis)

status: Public on Oct 14 2021

organism: Gracilariopsis lemaneiformis


title: NanoString nCounter Mouse RNA Expression Assay

status: Public on Oct 13 2021

city: San Diego

first: Wenjing

last: Yanf

state: CA

address: 10770 Science Center Drive

department: Oncology

institute: Pfizer

organism: Mus musculus

manufacture_protocol: See manufacturer's website (www.nanostring.com)


title: NextSeq 550 (Austrofundulus limnaeus)

organism: Austrofundulus limnaeus


title: Agilent-059505 MHI_Inflammation_Exon_II_v2 045268

city: Montréal

first: John

middle: D

last: Rioux

state: QC

address: 5000 Bélanger St.

department: Research Center

country: Canada

institute: Montreal Heart Institute

description:
Arrays of this design have barcodes that begin with 16059505 or 2559505.
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
Orientation:
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
The ID column represents the Agilent Feature Extraction feature number.
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NovaSeq 6000 (unclassified Stomphastis)

organism: unclassified Stomphastis


title: Agilent-086360 Shbio Human (4*180K) array

city: Shanghai

first: Zifan

last: Yue

address: No. 415 Fengyang Road, Hangpu District

department: Ophthalmology

country: China

institute: Shanghai Changzheng Hospital

manufacture_protocol: See manufacturer's web site (www.agilent.com).


title: BGISEQ-500 (Larimichthys crocea)

organism: Larimichthys crocea


title: NextSeq 550 (Iconisemion striatum)

organism: Iconisemion striatum


title: Illumina NovaSeq 6000 (Monodelphis domestica)

organism: Monodelphis domestica


title: Illumina HiSeq 4000 (Iconisemion striatum)


title: NextSeq 550 (Macaca nemestrina)

organism: Macaca nemestrina


title: Illumina HiSeq 4000 (Aphyosemion australe)

organism: Aphyosemion australe


title: Illumina HiSeq 2500 (Schizosaccharomyces japonicus)

status: Public on Oct 11 2021

organism: Schizosaccharomyces japonicus


title: Illumina NovaSeq 6000 (other sequences)

status: Public on Oct 12 2021

organism: other sequences


title: Illumina HiSeq 4000 (Nothobranchius furzeri)

organism: Nothobranchius furzeri


title: Illumina NovaSeq 6000 (Treponema pallidum)

organism: Treponema pallidum


title: NextSeq 550 (Nothobranchius furzeri)


title: Illumina NovaSeq 6000 (Cynara cardunculus)

organism: Cynara cardunculus


title: Illumina NovaSeq 6000 (Brassica carinata)

organism: Brassica carinata


title: NextSeq 550 (Aphyosemion australe)


title: Illumina HiSeq 4000 (Schizosaccharomyces japonicus)

status: Public on Oct 08 2021


title: Illumina NovaSeq 6000 ([Candida] haemuloni)

organism: Candidozyma haemuli


title: Illumina HiSeq 4000 (Escherichia phage M13)

status: Public on Oct 06 2021

organism: Escherichia phage M13


title: Illumina HiSeq 4000 (Ambystoma mexicanum)

organism: Ambystoma mexicanum


title: Illumina NovaSeq 6000 (Laccaria bicolor)

organism: Laccaria bicolor


title: Illumina NovaSeq 6000 (Geobacter sulfurreducens KN400)

organism: Geobacter sulfurreducens KN400


title: Ion Torrent Proton (Laccaria bicolor)


title: nCounter Mouse miRNA Assay

status: Public on Oct 09 2021

city: Philadelphia

first: Mariana

last: Franco Fragoso

state: PA

address: 333 Cottman Avenue

department: Cancer Prevention and Control

institute: Fox Chase Cancer Center

organism: Mus musculus

manufacture_protocol: see manufacturer website


title: Ion Torrent Proton (Coprinopsis cinerea)

organism: Coprinopsis cinerea


title: NanoString nCounter for Danio rerio

city: Moscow

first: Leonid

last: Uroshlev

address: Gubkina, 3

country: Russia

institute: Vavilov Institute of General Genetics RAS

organism: Danio rerio

manufacture_protocol: See manufacturer's website (www.nanostring.com).


title: Illumina HiSeq 2500 (Cenchrus americanus)

organism: Cenchrus americanus


title: Sequel (Salmonella enterica subsp. enterica serovar Typhimurium)

status: Public on Oct 07 2021


title: Illumina NovaSeq 6000 (Klebsiella aerogenes)

organism: Klebsiella aerogenes


title: Illumina HiSeq 2500 (Steinernema puntauvense)

status: Public on Oct 01 2021

organism: Steinernema puntauvense


title: Illumina HiSeq 2000 (Giardia intestinalis)

status: Public on Oct 03 2021

organism: Giardia duodenalis


title: Illumina NovaSeq 6000 (Juglans regia)

status: Public on Oct 04 2021

organism: Juglans regia


title: Illumina NextSeq 500 (Clostridium botulinum)

organism: Clostridium botulinum


title: Illumina HiSeq 4000 (Moxostoma hubbsi)

organism: Moxostoma hubbsi


title: Illumina NovaSeq 6000 (Ctenopharyngodon idella)

organism: Ctenopharyngodon idella


title: NanoString nCounter Gene Expression

status: Public on Oct 05 2021

city: Chapel Hill

first: Xiaohua

last: Gao

state: NC

address: 450 West Dr

department: Lineberger Comprehensive Cancer Center

institute: UNC

organism: Homo sapiens

manufacture_protocol: Briefly, RNA was isolated from a 1-mm FFPE core or two 10-μm unstained FFPE slides using the Qiagen RNeasy FFPE Kit and protocol (catalog no. 73504). RNA was quantitated using a Thermo Fisher Scientific NanoDrop 2000 Spectrophotometer (catalog no. ND-2000) and Agilent 4200 TapeStation. After excluding samples with low concentration or low percentages of RNA molecules >300 nucleotides long, the remaining 90% of samples were processed by the UNC Translational Genomics Laboratory using the NanoString nCounter platform.


title: NanoString nCounter Mouse Neuroinfllamation probes

city: Omaha

first: Eric

last: Peeples

state: NE

address: 8200 Dodge Street

department: Pediatrics

institute: University of Nebraska Medical Center


title: PamChip array with 144 tyrpsine kinase peptides

technology: spotted peptide or protein

description: peptide array

manufacture_protocol: custom designed as described in the manuscript


title: NIAID Mouse 17K v1.0

city: Ankara

first: Ihsan

last: Gursel

state: Cankaya

address: Faculty of Science, Ihsan Dogramaci Bilkent University

department: Molecular Biology and Genetics

country: Turkey

institute: Bilkent University

technology: spotted oligonucleotide

distribution: non-commercial

manufacture_protocol:
The mouse genome oligonucleotide probe set contains 16,896 optimized 70mers (plus controls) obtained from Operon (http://www.operon.com/).
The oligonucleotide probes were purchased in 384-well polypropylene plates (Genetix, 384 micro array) and dissolved in 4XSSC print buffer at a concentration of 20-30 uM.
The microarray is composed of 32 blocks and one spot is printed per probe per slide.
The spot size is 100 micron and spot distance is 185 microns (center-to-center).
The microarrays were printed on Gold Seal micro slides (Cat #3010) coated with poly-L-lysine and post-processed according to Operon's protocol.
Overall, polylysine coating on glass support constitutes the main backbone of the microarrays.


title: Agilent-028416 GEVitisVinifera

status: Public on Feb 20 2019

city: Turi

first: Maria Francesca

last: Cardone

state: Bari

address: via Casamassima 148

department: Centro di ricerca Viticoltura ed Enologia (CREA-VE)

institute: Consiglio per la ricerca in agricoltura e l’analisi dell’economia agraria (CREA)

organism: Vitis vinifera

description:
Arrays of this design have barcodes that begin with 16028416 or 2528416.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

relation: Alternative to: GPL30912 (Probe name version)


title: NextSeq 550 (Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10)

last: GEO


title: NextSeq 2000 (Arabidopsis thaliana)

organism: Arabidopsis thaliana


title: NextSeq 2000 (Staphylococcus aureus)

organism: Staphylococcus aureus