title: Illumina NovaSeq 6000 (Pyrus calleryana)

status: Public on Dec 31 2021

last: GEO

country: USA

organism: Pyrus calleryana

technology: high-throughput sequencing

distribution: virtual


title: CRC-OHS Porphyromonas gingivalis W83 1977v1

city: Carlton

first: Catherine

last: Butler

state: VIC

address: 720 Swanston St

department: The Melbourne Dental School

country: Australia

institute: The University of Melbourne

organism: Porphyromonas gingivalis W83

technology: spotted oligonucleotide

distribution: non-commercial

manufacturer: Oligonucleotide probes synthesized by Geneworks (Illumina Oligator). Microarrays printed by The Australian Genome Research Facility.

manufacture_protocol: Microarray consists of 1,977 60-mer oligonucleotides based on the >1,990 predicted open reading frames of P. gingivalis W83 (RefSeq accession number NC_002950.2). Additional probes are based on predicted protein coding regions found in the Los Alamos National Laboratory (LANL) Oralgen project (www.oralgen.lanl.gov). The full complement of probes are printed four times onto each microarray slide.


title: Illumina HiSeq 2000 (Comamonas testosteroni)

organism: Comamonas testosteroni


title: Agilent-038008 Horse immuno-specific Ecaballus_v1

status: Public on Dec 30 2021

city: Legnaro (PD)

first: Serena

last: Ferraresso

state: Padova

address: Viale dell'Università

department: Dept of Comparative Biomedicine and Food Science

country: Italy

institute: University of Padova

organism: Equus caballus

technology: in situ oligonucleotide

description: Genes selection for the microarray platform design was focused on immune system and mucosal genes. A total of 7,238 Ensembl equine Transcript IDs were employed for microarray probe design. The probes (60-mers) were designed using the software eArray and synthesized in duplicate through SurePrint (Agilent) technology to obtain a 8 x 15k microarray format. Probe ID on the array corresponds to Ensembl transcript ID.

distribution: custom-commercial

manufacture_protocol: See SurePrint Technology at manufacturer's web site (http://agilent.com/).


title: Microarrays of nuclearly encoded human tRNAs and supressor tRNA

status: Public on Apr 04 2023

city: Hamburg

first: Zoya

last: Ignatova

address: Martin -Luther-King-Platz 6

country: Germany

institute: Universitaet Hamburg

organism: Homo sapiens

manufacturer: Fraunhofer Institute for Biomedical Research (Potsdam, Germany)

manufacture_protocol:
1. Oligos were arrayed in 384 well plates with a final concentration of 10 µM in 3× SSC/0.01% SDS in a total volume of 25 µl.
2. Arrays were printed onto (3-Glycidyloxypropyl)trimethoxysilane (Sigma) activated glas slides using a contact-spotter (QArray 2, Moleculare Devices).
3. After spotting arrays were incubated overnight at 4°C in a humidified atmosphere and subsequently dried for 30 min at 30°C.
4. Arrays were stored in a dry atmosphere at room temperature until use.


title: Illumina MiSeq (sulfo-oxidizing enrichment culture)

status: Public on Dec 28 2021

organism: sulfo-oxidizing enrichment culture


title: Illumina HiSeq 4000 (Staphylococcus phage SAM1)

status: Public on Dec 29 2021

organism: Staphylococcus phage SAM1


title: Olink Human Proximity Extension Assay Explore 1536

status: Public on Mar 30 2022

city: New Haven

first: William

last: Damsky

state: CT

address: 333 Cedar St

institute: Yale School of Medicine

technology: RT-PCR

manufacture_protocol: Completed by Olink team, protocol not available


title: NextSeq 2000 (Streptococcus pyogenes)

organism: Streptococcus pyogenes


title: NextSeq 550 (Dreissena rostriformis)

status: Public on Dec 26 2021

organism: Dreissena rostriformis


title: Illumina HiSeq 4000 (Rubivirus rubellae)

status: Public on Dec 27 2021

organism: Rubivirus rubellae


title: Illumina HiSeq 2500 (Streptomyces albulus)

organism: Streptomyces noursei


title: Illumina NextSeq 500 (Microtus ochrogaster)

organism: Microtus ochrogaster


title: Illumina HiSeq 4000 (Piaractus mesopotamicus)

organism: Piaractus mesopotamicus


title: Illumina NovaSeq 6000 (Piaractus mesopotamicus)


title: Sequel (Octopus vulgaris)

status: Public on Dec 23 2021

organism: Octopus vulgaris


title: VG-CARE_Homo sapiens_20 gene expression panel for hepatocellular carcinoma

status: Public on Dec 25 2021

city: Tuebingen

first: Srinivas

middle: Reddy

last: Pallerla

state: Baden-Württemberg

address: Wilhelmstraße 27

department: Institute for Tropical Medicine

institute: Universitätsklinikum Tübingen

description:
HCC PCR assay panel
For cDNA synthesis, one microgram of total RNA from each sample was reverse transcribed in 20 µL reaction using the RevertAid First Strand cDNA Synthesis Kit (Thermo Fisher Scientific, Waltham, MA, USA) according to the manufacturer’s instructions. The cDNA was diluted to 1:10 with nuclease-free water and subjected to quantitative real-time PCR. The quantitative real-time PCR was performed with the LightCycler 480 Instrument II (Roche, Basel, Switzerland) in 96 well plates using a 10 µL final volume containing 0.3 µmol/L of forward and reverse primers, 2 µL of diluted cDNA and 1X SensiFAST™ SYBR® No-ROX Kit (Bioline, Memphis, TN, USA). PCR cycle parameters were initial denaturation at 94 °C for 2 min, 40 cycles at 95 °C for 10 s, and 60°C for 25 s, with the fluorescence signal acquired at the end of each cycle. A melting curve analysis was performed at the end of the amplification. All 23 genes (20 genes under investigation plus 3 housekeeping genes) were quantified in duplicates in 96 well plates having a couple of non-template reactions with ACTB primers. The primer sequences used are given in the supplementary table.

manufacture_protocol: Primers details used in the panel and relevant citations are in the readme file attached.


title: [CCIA/UNSW] mouse PCR array version 1

status: Public on Apr 16 2022

city: Sydney

first: Sze Wing

last: Wong

state: NSW

address: PO Box 81 Randwick

institute: Children's Cancer Institute

organism: Mus musculus

description: PCR assay

manufacture_protocol: see manufacturer's website


title: Illumina NextSeq 500 (Octopus vulgaris)


title: mouse Glia panel Cat# XT- CSO-M-Glial-12

status: Public on Sep 28 2022

city: NEW HAVEN

first: Arie

last: Kaffman

address: 300 GEORGE ST. SUITE 901, SUITE 901

institute: YALE UNIVERSITY

technology: other


title: Illumina HiSeq 1500 (Caenorhabditis briggsae)

organism: Caenorhabditis briggsae


title: BGISEQ-500 (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)

status: Public on Dec 24 2021


title: Illumina NovaSeq 6000 (Capitella teleta)

status: Public on Dec 22 2021

organism: Capitella teleta


title: NanoString nCounter GX Human Immunology v2

city: Santiago de Compostela

first: Alberto

last: Gómez-Carballa

state: A coruña

address: Choupana sn

department: Pediatrics

country: Spain

institute: GENVIP research group

manufacture_protocol: See manufacturer's website http://www.nanostring.com


title: AB 5500xl-W Genetic Analysis System (Enterococcus faecalis)

status: Public on Dec 21 2021

organism: Enterococcus faecalis


title: Illumina NovaSeq 6000 (Methylococcus capsulatus str. Bath)

organism: Methylococcus capsulatus str. Bath


title: Illumina HiSeq 4000 (Medicago sativa)

organism: Medicago sativa


title: Illumina HiSeq 2000 (Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10)


title: DNBSEQ-G400 (Oryza sativa Indica Group)

organism: Oryza sativa Indica Group


title: Illumina NovaSeq 6000 (Peromyscus maniculatus nubiterrae x Peromyscus maniculatus bairdii)

status: Public on Dec 20 2021


title: Illumina NextSeq 500 (Fusobacterium nucleatum subsp. nucleatum ATCC 23726)


title: Illumina HiSeq 3000 (Synechocystis sp. PCC 6803)

organism: Synechocystis sp. PCC 6803


title: Full Moon BioSystems Human Phospho-antibody Microarray

city: Tlalnepantla de Baz

first: Luis

middle: E.

last: Arias-Romero

email: larias@unam.mx, lear1607@hotmail.com

address: Av. de los Barrios #1

department: UBIMED

country: Mexico

institute: FES-Iztacala, UNAM

organism: Homo sapiens

technology: antibody


title: Illumina NovaSeq 6000 (Paeonia suffruticosa)

organism: Paeonia suffruticosa


title: Agilent-067009 custom Daphnia magna microarray Dmagna-v1.2

city: Bayreuth

first: Alfons

middle: R

last: Weig

address: Universitaetsstrasse 30

department: Genomics and Bioinformatics

institute: University of Bayreuth

organism: Daphnia magna

description:
Arrays of this design have barcodes that begin with 16067009 or 2567009.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol:
Sequences were taken from the Daphnia genome project
see manufacturer's web site at http://www.agilent.com/


title: Illumina NovaSeq 6000 (Jaltomata procumbens)

status: Public on Dec 18 2021

organism: Jaltomata procumbens


title: DNBSEQ-G50 (Oryctolagus cuniculus)

status: Public on Dec 19 2021

organism: Oryctolagus cuniculus


title: Illumina HiSeq 2500 (Peromyscus maniculatus nubiterrae)

organism: Peromyscus maniculatus nubiterrae


title: Illumina NovaSeq 6000 (Moschus berezovskii)

organism: Moschus berezovskii


title: Illumina HiSeq 4000 (Populus sp. cv. 'Okanese')

status: Public on Dec 17 2021

organism: Populus sp. cv. 'Okanese'


title: Illumina HiSeq 2500 (Peromyscus maniculatus bairdii)

organism: Peromyscus maniculatus bairdii


title: Illumina NextSeq 500 (Phodopus roborovskii)

status: Public on Dec 16 2021

organism: Phodopus roborovskii


title: Illumina NovaSeq 6000 (Desulfovibrio alaskensis)

organism: Oleidesulfovibrio alaskensis


title: Illumina HiSeq 4000 (Orbilia oligospora)

organism: Orbilia oligospora


title: Illumina MiSeq ([Candida] glabrata)

organism: Nakaseomyces glabratus


title: Accurate Biology AG11071 RT-PCR

status: Public on Dec 15 2021

city: Guilin

first: deng

last: zhang

address: No. 85, Yanshan street, Yanshan District, Guilin, Guangxi

country: China

institute: Guangxi Institute of Botany

organism: Arundo donax

description: PCR assay


title: Illumina NovaSeq 6000 (Jaltomata herrerae)

organism: Jaltomata herrerae


title: Illumina HiSeq 3000 (Bos indicus)

organism: Bos indicus


title: Illumina NextSeq 500 (Escherichia coli 536)

organism: Escherichia coli 536


title: GeoChip 5.0

city: Beijing

first: Changyi

last: Xie

address: Qinghua yuan street

department: School of Environment

institute: Tsinghua University

organism: uncultured soil microorganism


title: NextSeq 550 (Marmota monax)

status: Public on Dec 13 2021

organism: Marmota monax


title: Illumina NextSeq 500 (Mycobacterium tuberculosis CDC1551)

status: Public on Dec 14 2021

organism: Mycobacterium tuberculosis CDC1551


title: NextSeq 550 (Condylura cristata)

organism: Condylura cristata


title: MinION (Schizosaccharomyces pombe)

organism: Schizosaccharomyces pombe


title: Illumina NovaSeq 6000 (Phodopus roborovskii)


title: Illumina NextSeq 500 (Mus musculus; Rattus norvegicus)

organism:
Mus musculus
Rattus norvegicus


title: Illumina HiSeq 2500 (Ascaris suum)

organism: Ascaris suum


title: Illumina HiSeq 4000 (Trachinotus carolinus)

organism: Trachinotus carolinus


title: NextSeq 550 (Blarina brevicauda)

organism: Blarina brevicauda


title: Nanostring Technology

city: Rotterdam

first: Michelle

last: Broekhuizen

address: Dr. Molewaterplein 40

country: Netherlands

institute: Erasmus MC

organism: Homo sapiens


title: Illumina HiSeq 4000 (Bombus vestalis)

organism: Bombus vestalis


title: NextSeq 550 (Neosciurus carolinensis)

organism: Sciurus carolinensis


title: NextSeq 550 (Tamiasciurus hudsonicus)

organism: Tamiasciurus hudsonicus


title: Illumina NovaSeq 6000 (Ascaris suum)


title: NextSeq 550 (Rattus rattus)

organism: Rattus rattus


title: HiSeq X Ten (Drosophila simulans)

organism: Drosophila simulans


title: NextSeq 550 (Cuniculus paca)

organism: Cuniculus paca


title: HumanOmniExpress-24 v1.2 BeadChip [SNP_ID version]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

technology: oligonucleotide beads

distribution: commercial

manufacture_protocol: See manufacturer's website


title: NextSeq 550 (Heterocephalus glaber)

organism: Heterocephalus glaber


title: NextSeq 550 (Myocastor coypus)

organism: Myocastor coypus


title: NextSeq 550 (Ondatra zibethicus)

organism: Ondatra zibethicus


title: NextSeq 550 (Scalopus aquaticus)

organism: Scalopus aquaticus


title: NextSeq 550 (Fukomys damarensis)

organism: Fukomys damarensis


title: Illumina NovaSeq 6000 (Orbilia oligospora)

organism: Orbilia oligospora


title: NextSeq 550 (Peromyscus maniculatus)

organism: Peromyscus maniculatus


title: NextSeq 550 (Tamias striatus)

organism: Tamias striatus


title: NextSeq 550 (Octodon degus)

organism: Octodon degus


title: NextSeq 550 (Chinchilla lanigera)

organism: Chinchilla lanigera


title: NextSeq 550 (Cricetulus barabensis)

organism: Cricetulus barabensis


title: NextSeq 550 (Neotoma cinerea)

organism: Neotoma cinerea


title: NextSeq 550 (Acomys russatus)

organism: Acomys russatus


title: NextSeq 550 (Castor canadensis)

organism: Castor canadensis


title: NextSeq 550 (Ellobius lutescens)

organism: Bramus lutescens


title: HiSeq X Ten (Leucoraja erinacea)

status: Public on Dec 12 2021

organism: Leucoraja erinaceus


title: Illumina NovaSeq 6000 (Oryza sativa Indica Group)

organism: Oryza sativa Indica Group


title: Illumina NovaSeq 6000 (Nicotiana benthamiana)

organism: Nicotiana benthamiana


title: Illumina nextseq 500 (Homo sapiens)

status: Public on Dec 10 2021

organism: Homo sapiens


title: Illumina NovaSeq 6000 (Leucoraja erinacea)


title: Illumina HiSeq 4000 (Camellia oleifera)

organism: Camellia oleifera


title: Illumina NovaSeq 6000 (Pyrus hybrid rootstock)

organism: Pyrus hybrid rootstock


title: Nanostring Human PanCancer Immune Panel [NS_CancerImmune_V1.1]

city: Taipei

first: Hsiang-Fong

last: Kao

state: Please Select

address: No.57, Ln. 155, Sec. 3, Keelung Rd.,

department: Medical Oncology

country: Taiwan

institute: National Taiwan University Cancer Center

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: Illumina HiSeq 4000 (Lasiodiplodia theobromae)

organism: Lasiodiplodia theobromae


title: TaqMan Array Human MicroRNA Card A v2.0

city: Bonn

first: Mohammed Rabiul

last: Hosen

state: NRW

address: Venusberg-Campus 1

department: Internal Medicine-II

institute: University of Bonn

description: TaqMan Array Human MicroRNA Card A v2.0


title: Illumina NovaSeq 6000 (Populus tremula x Populus alba)

last: GEO

organism: Populus tremula x Populus alba


title: Nanostring nCounter human ELEMENTS TAGSETS

city: Barcelona

first: Fernando

last: Salvador Gómez

address: Balmes 89, 3º 7

institute: SOLTI


title: Illumina HiSeq 2500 (Escherichia coli; Staphylococcus aureus)

status: Public on Dec 09 2021

organism:
Escherichia coli
Staphylococcus aureus


title: HiSeq X Ten (Mycobacterium tuberculosis variant bovis BCG)

status: Public on Dec 08 2021


title: Illumina HiSeq 2000 (Heliconius melpomene rosina)

status: Public on Dec 07 2021

organism: Heliconius melpomene rosina


title: Customized Nanostring nCounter human TP53 signature panel

city: Bunkyo-ku

first: Mai

last: Onishi

state: Tokyo

department: Clinical oncology

country: Japan

institute: Juntendo university Graduated schoo;

manufacturer: NanoString Technologies, Inc.; Seattle, WA


title: Illumina MiSeq (Gossypium hirsutum)

organism: Gossypium hirsutum


title: Illumina HiSeq 2000 (Heliconius erato demophoon)

organism: Heliconius erato demophoon


title: MinION (Polypedilum vanderplanki)

organism: Polypedilum vanderplanki


title: Illumina NextSeq 500 (Chlorocebus sabaeus; Rickettsia canadensis)

organism:
Rickettsia canadensis
Chlorocebus sabaeus


title: Illumina HiSeq 2000 (Homo sapiens; Pan troglodytes)

organism:
Pan troglodytes
Homo sapiens


title: Illumina HiSeq 2000 (Heliconius erato cyrbia)

organism: Heliconius erato cyrbia


title: Illumina NextSeq 500 (Pseudomonas fluorescens)

organism: Pseudomonas fluorescens


title: Illumina HiSeq 2000 (Heliconius melpomene cythera)

organism: Heliconius melpomene cythera


title: Illumina HiSeq 2500 (Homo sapiens; Legionella pneumophila)

organism:
Legionella pneumophila
Homo sapiens


title: NextSeq 550 (Acinetobacter baumannii)

organism: Acinetobacter baumannii


title: DNBSEQ-T7 (Arabidopsis thaliana)

organism: Arabidopsis thaliana


title: Illumina HiSeq 2500 (Vibrio splendidus)

status: Public on Dec 06 2021

organism: Vibrio splendidus


title: HiSeq X Ten (Litchi chinensis)

organism: Litchi chinensis


title: Illumina NovaSeq 6000 (Bubalus bubalis)

organism: Bubalus bubalis


title: HiSeq X Ten (Nothobranchius furzeri)

status: Public on Dec 03 2021

organism: Nothobranchius furzeri


title: Illumina HiSeq 3000 (Laccaria bicolor)

organism: Laccaria bicolor


title: Illumina HiSeq 2500 (Polypedilum vanderplanki)


title: Illumina HiSeq 2500 (Enterococcus faecalis; Pseudomonas aeruginosa)

organism:
Pseudomonas aeruginosa
Enterococcus faecalis


title: IIllumina Infinium human CytoSNP-850K iScan BeadChip

city: Houston

first: Yuya

last: Sasaki

state: TX

address: 1515 Holcombe Blvd

institute: M.D. Anderson Cancer Center

organism: Homo sapiens


title: NextSeq 550 (Pectobacterium carotovorum)

organism: Pectobacterium carotovorum


title: NanoString  nCounter Human  Metabolic Pathways Panel

status: Public on Dec 01 2021

city: Charleston

first: Natalia

last: Oleinik

state: SC

address: 87 Jonathan Lucas St

department: Biochemistry

institute: MUSC

manufacture_protocol: oligonucleotide probes tagged with identifiers consisting of a unique sequences of multi-color fluorophores


title: Microarrays of yeast nuclearly encoded tRNAs

status: Public on Jun 14 2020

city: Hamburg

first: Zoya

last: Ignatova

address: Martin -Luther-King-Platz 6

institute: Universitaet Hamburg

organism: Saccharomyces cerevisiae

manufacture_protocol:
1. Oligos were arrayed in 384 well plates with a final concentration of 10 µM in 3× SSC/0.01% SDS in a total volume of 25 µl.
2. Arrays were printed onto (3-Glycidyloxypropyl)trimethoxysilane (Sigma) activated glas slides using a contact-spotter (QArray 2, Molecular Devices).
3. After spotting arrays were incubated overnight at 4°C in a humidified atmosphere and subsequently dried for 30 min at 30°C.
4. Arrays were stored in a dry atmosphere at room temperature until use.


title: Qiagen RT2 Profiler PCR Array Human Aging [PAHS-178Z]

city: Newark

first: Pranela

last: Rameshwar

state: NJ

address: 185 South Orange Avenue

department: Medicine

institute: Rutgers NJ Medical School

description: PCR assay


title: Illumina HiSeq 2000 (Bordetella bronchiseptica)

organism: Bordetella bronchiseptica


title: Illumina NovaSeq 6000 (Trichoderma atroviride)

status: Public on Dec 02 2021

organism: Trichoderma atroviride


title: Illumina MiSeq (metagenome)

organism: metagenome


title: Illumina HiSeq 2000 (Scyliorhinus canicula)

organism: Scyliorhinus canicula


title: TaqMan® Array Human Apoptosis Through Death Receptors 96-well Plate

city: Recife

first: Leila

last: Mendonça Vieira

state: Pernambuco

address: Av Prof. Moraes Rego, 1235 - Cidade Universitaria

department: LAVITE

country: Brazil

institute: FIOCRUZ

description:
PCR assay
TaqMan® Gene Expression Assays


title: Illumina NovaSeq 6000 (Deinococcus radiodurans)

organism: Deinococcus radiodurans


title: Illumina NovaSeq 6000 (Trichophyton mentagrophytes)

organism: Trichophyton mentagrophytes


title: NextSeq 550 (Hydrochoerus hydrochaeris)

organism: Hydrochoerus hydrochaeris


title: NimbleGen rat Gene Expression 12x135K array [090901_Rat_HX12_expr]

status: Public on Jul 29 2013

first: Ji-lai

last: Liu

state: Beijing

address: Taiping road 27

department: Biochemistry and Molecular Biology

institute: Beijing Institute of Radiation Medicine

organism: Rattus norvegicus

description:
The NimbleGen rat Gene Expression 12x135K array enables cost-effective and high-throughput whole-transcriptome expression profiling. This multiplex array format allows convenient and simultaneous hybridization of 12 independent samples on each slide, without compromising information content or data quality. The array interrogates 26,419 transcripts from Ensembl build RGSC 3.4 with 5 probes per transcript.
Probe Length: 60mer

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.


title: Illumina MiSeq (human saliva metagenome)

organism: human saliva metagenome


title: Illumina NovaSeq 6000 (Mus)

status: Public on Dec 22 2021

organism: Mus


title: NextSeq 2000 (Saccharomyces cerevisiae)

status: Public on Dec 18 2021