title: NanoString GeoMx Human Protein GMX-PRO-MORPH-HST-12

status: Public on Jan 31 2022

city: Changsha

first: Lin

last: Ye

address: 139 Renmin Middle Road, Furong district, Changsha

country: China

institute: Central South University

organism: Homo sapiens

technology: in situ oligonucleotide

distribution: custom-commercial

manufacture_protocol: See manufacturer's website


title: Agilent-069507 ArrayXS_Danio_rerio_V1 (gene version)

status: Public on Aug 11 2022

city: Caparica

first: Patricia

middle: H.

last: Brito

address: Rua Câmara Pestana

country: Portugal

institute: NOVA School of Science and Technology

organism: Danio rerio

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Nanostring nCounter Mouse v1.5 miRNA Expression Assay (NS_M_miR_v1.5)

status: Public on Mar 16 2022

city: Toronto

first: Elena

last: Comelli

state: Ontario

address: 1 king's college circle, MSB5354

department: Nutritional Sciences

country: Canada

institute: University of Toronto

organism: Mus musculus

technology: other

manufacture_protocol: See manufacturer's website http://www.nanostring.com


title: HiSeq X Ten (Vibrio harveyi)

last: GEO

country: USA

organism: Vibrio harveyi

technology: high-throughput sequencing

distribution: virtual


title: HiSeq X Ten (Xenopus laevis)

organism: Xenopus laevis


title: Illumina HiSeq 4000 (Pinus pinaster)

status: Public on Jan 29 2022

organism: Pinus pinaster


title: Illumina NextSeq 500 (Botrytis cinerea; Malus domestica)

organism:
Malus domestica
Botrytis cinerea


title: Illumina HiSeq 4000 (Apis mellifera ligustica)

organism: Apis mellifera ligustica


title: Illumina NextSeq 500 (Malus domestica)

organism: Malus domestica


title: Illumina HiSeq 2000 (Marchantia polymorpha)

organism: Marchantia polymorpha


title: Infinium MouseMethylation285 BeadChip

status: Public on Apr 11 2022

city: Philadelphia

first: Yemin

last: Lan

state: PA

address: 3400 Civic Center Blvd

institute: University of Pennsylvania

technology: spotted oligonucleotide

manufacture_protocol: see manufacturer's website


title: Illumina HiSeq 2500 (Plasmodium falciparum Dd2)

status: Public on Jan 28 2022

organism: Plasmodium falciparum Dd2


title: NanoString nCounter custom panel to detect mouse tubulin isoforms exons and introns

first: Benjamin

last: Prosser

address: 700 CRB, 415 Curie Blvd

department: Physiology


title: NanoString nCounter custom panel for mouse hypertrophy and fibrosis related genes


title: NanoString nCounter custom panel for mouse tubulin isoforms and tubulin-related genes


title: Illumina NextSeq 500 (Chlorocebus pygerythrus)

status: Public on Jan 27 2022

organism: Chlorocebus pygerythrus


title: Agilent-085499_SBC human ceRNA microarray [ProbeName version]

city: Chengdu

first: Kejie

last: Chen

state: Sichuan

address: 783#, Xindu Avenue

institute: Chengdu Medical College

manufacture_protocol: see manufacturer's web site at http://www.agilent.com


title: Illumina HiSeq 2000 (Halocynthia roretzi)

organism: Halocynthia roretzi


title: Nanostring Cancer Path Panel [NS_CancerPath_C2535]

city: Houston

first: David

middle: S

last: Hong

state: Texas

address: Room FC8.3050, 1400 Holcombe Blvd.

department: Department of Investigational Cancer Therapeutics

institute: University of Texas M.D. Anderson Cancer Center

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: Illumina HiSeq 2000 (Neisseria gonorrhoeae MS11)

status: Public on Jan 26 2022

organism: Neisseria gonorrhoeae MS11


title: Illumina NovaSeq 6000 (Simonsiella muelleri)

status: Public on Jan 21 2022

organism: Simonsiella muelleri


title: DNBSEQ-G400 (Homo sapiens; Mus musculus)

organism:
Homo sapiens
Mus musculus


title: Illumina HiSeq 4000 (Pseudomonas aeruginosa PAO1)

status: Public on Jan 25 2022

organism: Pseudomonas aeruginosa PAO1


title: NanoString nCounter custom panel to detect human tubulin isoforms exons and introns

organism: Homo sapiens


title: Qiagen Canine Cell Death RT² Profiler™ PCR Array

status: Public on Jan 24 2022

city: Blacksburg

first: Joanne

last: Tuohy

state: Virginia

address: 205 Duck Pond Dr

department: Small Animal Clinical Sciences

institute: Virginia Maryland College of Veterinary Medicine

organism: Canis lupus familiaris

technology: RT-PCR

manufacture_protocol: The array was custom designed by Qiagen's bioinformatics teams: see manufacturer's website


title: Illumina NovaSeq 6000 (Neisseria elongata subsp. glycolytica ATCC 29315)


title: NextSeq 550 (Ovis aries)

organism: Ovis aries


title: Agilent-034879 ADchip_1.0 033934 (Probe name version)

status: Public on Jan 19 2022

city: Leipzig

first: Kristin

last: Reiche

address: Perlickstr. 1

department: Diagnostics

country: Germany

institute: Fraunhofer Institute for Cell Therapy and Immunology

description:
Arrays of this design have barcodes that begin with 16034879 or 2534879.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

In 034879_D_GEO_20111025.txt, the ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: BGISEQ-500 (Chlorocebus sabaeus)

organism: Chlorocebus sabaeus


title: Illumina HiSeq 4000 (Zeugodacus cucurbitae)

organism: Zeugodacus cucurbitae


title: Illumina HiSeq 3000 (Populus tremula x Populus alba)

status: Public on Jan 20 2022

organism: Populus tremula x Populus alba


title: DNBSEQ-G400 (Callithrix jacchus)

organism: Callithrix jacchus


title: [GO_Screen_hu] Affymetrix human GO_Screen_hu Assay

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description:
This platform supports submissions for:
GO_Screen_hu
Applied Biosystems Clariom GO Screen Assay, human;
Catalog number: 952361

Annotations:
#%create_date=Mon Jun 24 16:48:33 PDT 2019
#%chip_type=GOScreen
#%chip_type=GO_Screen_hu
#%lib_set_name=GO_Screen_hu
#%lib_set_version=r3
#%genome-species=Homo sapiens
#%genome-version=hg38
#%genome-version-ucsc=hg38
#%genome-version-ncbi=GRCh38
#%genome-version-create_date=2013-12-00
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-species=Homo sapiens
#%genome-lifted_from-version-ucsc=hg38
#%genome-lifted_from-version-ncbi=GRCh38
#%netaffx-annotation-date=2016-06-03
#%netaffx-annotation-netaffx-build=36
#%netaffx-annotation-tabular-data-version=1.1
#%netaffx-annotation-tabular-format-version=1.1
#%netaffx-annotation-data-type=transcript_cluster
#%netaffx-annotation-docgen-method=module:affy/annotation_update/builder; exec:create-download-file.pl
#%netaffx-annotation-docgen-version=8487
#%guid=1154ed71-c66f-4d6b-8380-95763e360a91
## probeset_id refers to the transcript cluster id, not the exon level probe set, and is required for ExACT software compatibility.

distribution: commercial


title: DNBSEQ-T7 (Sus scrofa domesticus)

organism: Sus scrofa domesticus


title: Sequel II (Sus scrofa)

organism: Sus scrofa


title: Illumina NovaSeq 6000 (Alysiella filiformis DSM 16848)

organism: Alysiella filiformis DSM 16848


title: Illumina NovaSeq 6000 (Acinetobacter baumannii ATCC 17978)

status: Public on Jan 18 2022

organism: Acinetobacter baumannii ATCC 17978


title: Illumina NovaSeq 6000 (Burkholderia sp. JP2-270)

organism: Burkholderia sp. JP2-270


title: Illumina NovaSeq 6000 (Staphylococcus aureus subsp. aureus str. JKD6008)


title: Illumina MiSeq (Aspergillus fumigatus)

organism: Aspergillus fumigatus


title: Illumina NovaSeq 6000 (Synechocystis sp. PCC 6803)

organism: Synechocystis sp. PCC 6803


title: Illumina NovaSeq 6000 (Pseudozyma hubeiensis)

organism: Pseudozyma hubeiensis


title: Illumina HiSeq 4000 (Ustilago maydis 521)

organism: Mycosarcoma maydis


title: HiSeq X Ten (Parasteatoda tepidariorum)

organism: Parasteatoda tepidariorum


title: Arraystar Human SmallRNA Microarray (086761)

status: Public on Jan 17 2022

city: Rockville

first: Panos

last: Pan

address: 9430 Key West Avenue

institute: Arraystar Inc.

organism: Homo sapiens


title: Illumina HiSeq 2500 (Botryllus schlosseri)

organism: Botryllus schlosseri


title: Illumina NovaSeq 6000 ([Candida] glabrata; Saccharomyces cerevisiae)

organism:
Saccharomyces cerevisiae
Nakaseomyces glabratus


title: Arraystar Mouse SmallRNA Microarray (086760)

organism: Mus musculus


title: Illumina HiSeq 3000 (Bacteroides thetaiotaomicron)

status: Public on Jan 14 2022

organism: Bacteroides thetaiotaomicron


title: HiSeq X Ten (Plasmodium falciparum 3D7)

status: Public on Jan 15 2022

organism: Plasmodium falciparum 3D7


title: Illumina HiSeq 2500 (Burkholderia sp. JP2-270)

status: Public on Jan 16 2022


title: Illumina NovaSeq 6000 (Xanthomonas citri pv. glycines)

organism: Xanthomonas citri pv. glycines


title: NextSeq 550 (Equus caballus)

organism: Equus caballus


title: Illumina Genome Analyzer IIx (Salvelinus alpinus)

organism: Salvelinus alpinus


title: DNBSEQ-T7 (Salvelinus alpinus)


title: Illumina NovaSeq 6000 (Octopus vulgaris)

status: Public on Jan 13 2022

organism: Octopus vulgaris


title: RT² Profiler™ PCR Array Human Osteogenesis

city: São Paulo

first: Fabio

middle: Dupart

last: Nascimento

state: SP

address: Rua Doutor Gabriel Piza, 636 apto 23

department: Biochemistry

country: Brazil

institute: Federal University of Sao Paulo


title: Arraystar Mouse SmallRNA epi V1 Microarray (086826)


title: ThermoFisher Taqman® MicroRNA Arrays (Arrays A and B) [Cat. 4366597, cat. 4400928, cat. 4440040 and cat. 4400238.]

status: Public on Jan 10 2022

city: Botucatu

first: Juliana

middle: Ravelli Baldassarre

last: Martins

address: Rua Mansueto Lunardi, 37

institute: Faculdade de Medicina de Botucatu

manufacture_protocol: Comprehensive coverage of Sanger miRBase v10 is enable across a two-card set of Taqman® MicroRNA Arrays (Arrays A and B) for a total of 667 unique assays specific to human miRNAs. In addition, each array contains four control assays - three carefully selected candidate endogenous control assays and one negative control assay. Array A focuses on more highly characterized miRNAs, while Array B contains many of the more recently.


title: HiSeq X Ten (Nicotiana attenuata)

status: Public on Jan 11 2022

organism: Nicotiana attenuata


title: Illumina HiSeq 2500 (Fragaria hybrid cultivar)

status: Public on Jan 12 2022

organism: Fragaria hybrid cultivar


title: Illumina NextSeq 500 (Postia placenta)

organism: Rhodonia placenta


title: Illumina NovaSeq 6000 (Anopheles sinensis)

organism: Anopheles sinensis


title: Illumina HiSeq 4000 (Rhizobium phaseoli)

organism: Rhizobium phaseoli


title: DNBSEQ-G400 (Gallus gallus)

organism: Gallus gallus


title: TaqMan Advanced miRNA Human A Cards

city: Bologna

first: Gloria

last: Ravegnini

state: BO

address: via irnerio 48

department: PHARMACY AND BIOTECHNOLOGY

country: Italy

institute: UNIVERSITY OF BOLOGNA

description: 384-well microfluidic card format; primer-probe detection method


title: Illumina NovaSeq 6000 (Brassica rapa x Brassica nigra)

organism: Brassica rapa x Brassica nigra


title: Illumina NovaSeq 6000 (Brassica nigra)

organism: Brassica nigra


title: Illumina NextSeq 500 (Maylandia zebra)

status: Public on Jan 08 2022

organism: Maylandia zebra


title: HiSeq X Ten (Vigna radiata)

status: Public on Jan 09 2022

organism: Vigna radiata


title: Illumina HiSeq 2500 (Peromyscus maniculatus x Peromyscus polionotus)

status: Public on Jan 07 2022


title: Arraystar Human SmallRNA epi V1 Microarray (086823)

organism: Homo sapiens


title: NextSeq 550 (Ceratotherium simum cottoni)

status: Public on Jan 06 2022

organism: Ceratotherium simum cottoni


title: NanoString Human Glial Profiling Panel v1.0

city: Atlanta

first: Ashlyn

middle: G

last: Johnson

state: GA

address: 615 Michael Street NE

department: Neurology

institute: Emory University

manufacture_protocol: Two probes hybridize directly to a target molecule in solution. The Reporter Probe carries the fluorescent barcode and the Capture Probe contains a biotin moiety that immobilizes the hybridized complex for data collection. After hybridization, samples are transferred to an nCounter instrument which removes excess probes. Purified target-probe complexes are bound, immobilized and aligned on the imaging surface of the nCounter cartridge. Sample cartridges are scanned by an automated fluorescence microscope. Barcodes are counted for each target molecule and the data are exported as a simple CSV file. (https://www.nanostring.com/)


title: Illumina HiSeq 2500 (Peromyscus polionotus)

organism: Peromyscus polionotus


title: Illumina NextSeq 500 (Sulfitobacter sp. D7)

organism: Sulfitobacter sp. D7


title: Illumina HiSeq 2500 (Marseillevirus marseillevirus)

organism: Marseillevirus marseillevirus


title: Arraystar Mouse SmallRNA expression V1 Microarray (086825)

organism: Mus musculus


title: NextSeq 550 (Ceratotherium simum simum)

organism: Ceratotherium simum simum


title: Illumina HiSeq 2500 (Eragrostis tef)

organism: Eragrostis tef


title: Illumina NovaSeq 6000 (Bacillus anthracis)

organism: Bacillus anthracis


title: Arraystar Human SmallRNA expression V1 Microarray (086827)


title: Illumina MiSeq (Methylorubrum extorquens AM1)

organism: Methylorubrum extorquens AM1


title: Illumina HiSeq 3000 (Triticum turgidum subsp. durum)

organism: Triticum turgidum subsp. durum


title: Exiqon A/S miRCURY LNA microRNA Array, 6th generation - hsa, mmu & rno [ProductNumber=208400-02,208420-22; miRBase 18.0]

status: Public on Jan 05 2022

city: Wuhan

first: Jialu

last: Qiao

state: Hubei

address: Sanjiaohu Road No.8

institute: Jianghan University

organism:
Homo sapiens
Mus musculus

description:
Organism(s)=Homo sapiens, Human lymphocryptovirus, Human cytomegalovirus, Human immunodeficiency virus 1, Human herpes simplex virus 1, Human rhadinovirus, Simian polyomavirus 40, JC polyomavirus, BK polyomavirus, Merkel  cell polyomavirus, Herpes  Simplex Virus 2

ProductDate=November 2010
ProductNumber=208400,208401,208402,208420,208421,208422
LotNumberRange=34101-34101"

ArrayContents_DesignedFor=miRBase 16.0
ArrayContents_CurrentNameColumn=miRBase 18.0
ArrayContents_CurrentNameColumnCoverage=Homo sapiens and related vira:67.55%

manufacture_protocol: see Exiqon site


title: Illumina NovaSeq 6000 ([Haemophilus] ducreyi)

organism: [Haemophilus] ducreyi


title: Illumina HiSeq 2000 (Juglans regia)

organism: Juglans regia


title: StepOnePlus Real-Time PCR System human PBMCs

city: Rotterdam

first: Aafke

last: Duizendstra

address: Doctor Molewaterplein 40

country: Netherlands

institute: Erasmus Medical Center

description: PCR assay

manufacture_protocol: Forward and reverse primers were designed with NCBI PrimerBLAST according to MIQE guidelines. To prevent co-amplification of genomic DNA, intron-flanking primers or exon-exon junction primers were designed with target amplicon sequences of 80 to 150 bp with a maximum GC content of 65%. Forward and reverse primers were not modified and were purified with a desalt step (Merck, Darmstadt, Germany). Primer pairs were tested in duplicate for their optimal annealing temperature and amplification efficiency using healthy control PBMC derived cDNA.


title: Nanostring nCounter Elements and nCounter Master Kit

status: Public on Jan 04 2022

city: Zurich

first: Thomas

middle: F.

last: Müller

address: Rämistrasse

country: Switzerland

institute: University Hospital Zurich


title: Illumina HiSeq 4000 (Cicer arietinum)

organism: Cicer arietinum


title: DNBSEQ-T7 (Neurospora crassa)

organism: Neurospora crassa


title: NextSeq 550 (Canis lupus)

status: Public on Jan 03 2022

organism: Canis lupus


title: Illumina HiSeq 4000 (Haplochromis burtoni)

organism: Haplochromis burtoni


title: Illumina NextSeq 500 (Vibrio cholerae O1 biovar El Tor str. N16961)

status: Public on Jan 02 2022


title: [Axiom_PMDA] Applied Biosystems (Affymetrix) Axiom_PMDA Array

city: Durham

first: Christopher

middle: G.

last: Vann

state: NC

address: 300 N. Duke St

department: Molecular Physiology Institute

institute: Duke University School of Medicine

organism: Homo sapiens

description:
Axiom_PMDA.na36.r7.a8.annot.csv
Axiom_PMDA.r7.cdf

manufacture_protocol: see manufacturer's web site


title: Illumina NovaSeq 6000 (Mycobacteroides abscessus)

last: GEO

organism: Mycobacteroides abscessus


title: Agilent-020354 Kluyveromyces lactis

status: Public on Aug 26 2020

city: Cambridge

first: Carl

last: de Boer

state: MA

address: 415 Main St

institute: The Broad Institute

organism: Kluyveromyces lactis


title: Illumina Infinium array (BarleySNP50-JHI)

city: Brandon

first: James

middle: Raymond

last: Tucker

state: MB

address: 2701 Grand Valley Rd.

institute: Agriculture and Agri-Food Canada

organism: Hordeum vulgare

technology: oligonucleotide beads

manufacture_protocol: HTS processing


title: Illumina HiSeq 1000 (Pyricularia oryzae)

organism: Pyricularia oryzae


title: NextSeq 550 (Enterococcus faecalis)

organism: Enterococcus faecalis


title: Agilent-086243 Rat ceRNA microarray

city: Changsha

first: Bo-wei

last: CHEN

address: No. 95 Shaoshan Middle Road

institute: Hunan University of Chinese Medicine

organism: Rattus norvegicus


title: NanoString Mouse nCounter Myeloid Innate Immunity Panel NS_Mm_Myeloid_V2.0+Pls

first: JEHAN

last: ALAM

state: TEXAS

address: Baylor One Plaza

institute: Baylor College of Medicine

organism: Mus musculus

manufacture_protocol: See manufacturer's website (http://www.nanostring.com).


title: Gene Expression nCounter® RCC - Human Immunology V2 panel

city: Lausanne

first: Jeremy

last: Di Domizio

address: Av Boveresses 155

institute: CHUV


title: Agilent-020353 Naumovozyma castellii

organism: Naumovozyma castellii


title: DNBSEQ-G400 (Sus scrofa domesticus)

status: Public on Jan 19 2022

organism: Sus scrofa domesticus