title: Illumina NovaSeq 6000 (Homo sapiens; Respiratory syncytial virus type B)

status: Public on Apr 28 2022

last: GEO

country: USA

organism:
Homo sapiens
Respiratory syncytial virus type B

technology: high-throughput sequencing

distribution: virtual


title: Illumina NovaSeq 6000 (Homo sapiens; Respiratory syncytial virus type A)

organism:
Homo sapiens
Respiratory syncytial virus type A


title: Hiseq X ten (Homo sapiens)

organism: Homo sapiens


title: Illumina NovaSeq 6000 (Respiratory syncytial virus type A)

organism: Respiratory syncytial virus type A


title: Illumina NovaSeq 6000 (Respiratory syncytial virus type B)

organism: Respiratory syncytial virus type B


title: [HG-U133_Plus_2] Affymetrix GeneChip Human Genome HG-U133 Plus 2 Array [Brainarray HGU133Plus2_Hs_ENTREZG_v12]

status: Public on Sep 23 2010

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

technology: in situ oligonucleotide

description:
This is identical to GPL570 but a custom CDF environment was used to extract data [Brainarray Version 12, HGU133Plus2_Hs_ENTREZG].

CDF and other files can be downloaded at: http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/12.1.0/entrezg.asp

distribution: custom-commercial

relation: Alternative to: GPL570 (Alternative CDF [official])

manufacture_protocol: see manufacturer's web site


status: Public on May 30 2022

city: Duarte

first: Yi-Jia

last: Li

address: 1500 E Duarte Rd

institute: Beckman Research Institute at City of Hope Cancer Center

technology: RT-PCR

description:
RT-PCR assay
Human Fatty Acid and Lipid Metabolism Primer Library

manufacture_protocol: see manufacturer's website


title: Illumina MiSeq (Mesocricetus auratus; Severe acute respiratory syndrome coronavirus 2)

organism:
Mesocricetus auratus
Severe acute respiratory syndrome coronavirus 2


title: NextSeq 550 (Candida parapsilosis)

organism: Candida parapsilosis


title: Illumina HiSeq 2000 (Orobanche cernua var. cumana)

organism: Orobanche cernua var. cumana


title: Illumina NextSeq 500 (Pasteurella multocida)

organism: Pasteurella multocida


title: Illumina HiSeq 2000 (Orobanche cernua)

organism: Orobanche cernua


title: NextSeq 550 (Bombus impatiens)

organism: Bombus impatiens


title: Illumina HiSeq 3000 (Homo sapiens; Myxoma virus)

organism:
Homo sapiens
Myxoma virus


title: Illumina HiSeq 2500 (Camelus bactrianus)

organism: Camelus bactrianus


title: Illumina HiSeq 4000 (Haloferax volcanii)

organism: Haloferax volcanii


title: Illumina MiSeq (Chlorocebus sabaeus; Severe acute respiratory syndrome coronavirus 2)

organism:
Chlorocebus sabaeus
Severe acute respiratory syndrome coronavirus 2


title: Illumina NovaSeq 6000 (Homo sapiens; Mus musculus; Plasmodium vivax)

organism:
Plasmodium vivax
Homo sapiens
Mus musculus


title: Illumina NextSeq 500 (Homo sapiens; Mus musculus; Plasmodium vivax)


title: HiSeq X Ten (Lepidium sativum)

organism: Lepidium sativum


title: Illumina NextSeq 500 (Pseudomonas aeruginosa PA7)

organism: Pseudomonas paraeruginosa PA7


title: Illumina NextSeq 500 (Sparus aurata)

organism: Sparus aurata


title: Illumina NovaSeq 6000 (Myotis lucifugus)

organism: Myotis lucifugus


title: Illumina NovaSeq 6000 (Haloarcula hispanica)

organism: Haloarcula hispanica


title: Illumina NovaSeq 6000 (Haloferax mediterranei)

organism: Haloferax mediterranei


title: Illumina NextSeq 500 (Legionella pneumophila)

organism: Legionella pneumophila


title: Sequel (Saccharomyces cerevisiae)

organism: Saccharomyces cerevisiae


title: Illumina NextSeq 500 (Methylorubrum extorquens AM1)

organism: Methylorubrum extorquens AM1


title: Sequel (Medicago sativa)

organism: Medicago sativa


title: Illumina NextSeq 500 (human oral metagenome)

organism: human oral metagenome


title: NextSeq 550 (Acanthamoeba sp.; Pseudomonas fluorescens)

organism:
Pseudomonas fluorescens
Acanthamoeba sp.


title: Illumina NovaSeq 6000 (Bos indicus)

organism: Bos indicus


title: Illumina HiSeq 2500 (Lonchura striata domestica)

organism: Lonchura striata


title: NextSeq 2000 (Staphylococcus hominis)

organism: Staphylococcus hominis


title: NextSeq 550 (Clostridioides difficile)

organism: Clostridioides difficile


title: HiSeq X Ten (Bos indicus x Bos taurus)

organism: Bos indicus x Bos taurus


title: Illumina NovaSeq 6000 (human feces metagenome)

organism: human feces metagenome


title: Illumina HiSeq 4000 (Ectocarpus sp. Ec457)

organism: Ectocarpus sp. Ec457


title: Illumina NovaSeq 6000 (Loligo vulgaris)

organism: Loligo vulgaris


title: Illumina NovaSeq 6000 (human lung metagenome)

organism: human lung metagenome


title: Illumina HiSeq 4000 (Ectocarpus sp. Ec460)

organism: Ectocarpus sp. Ec460


title: Illumina NovaSeq 6000 (Bos indicus x Bos taurus)


title: Illumina HiSeq 2000 (Dinoroseobacter shibae)

organism: Dinoroseobacter shibae


title: HiSeq X Ten (Malus domestica; Venturia inaequalis)

organism:
Malus domestica
Venturia inaequalis


title: Illumina HiSeq 2500 (Anopheles albimanus)

organism: Anopheles albimanus


title: Illumina HiSeq 2500 (Anopheles gambiae)

organism: Anopheles gambiae


title: Illumina NextSeq 500 (Yersinia phage YerA41; Yersinia ruckeri)

organism:
Yersinia ruckeri
Yersinia phage YerA41


title: Illumina NovaSeq 6000 (Prunus dulcis)

organism: Prunus dulcis


title: HiSeq X Ten (Glycyrrhiza uralensis)

organism: Glycyrrhiza uralensis


title: Illumina NextSeq 500 (Amycolatopsis japonica)

organism: Amycolatopsis japonica


title: Illumina NovaSeq 6000 (Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821)


title: Ion Torrent S5 (Bos taurus)

organism: Bos taurus


title: Illumina NovaSeq 6000 (Hepatitis B virus; Homo sapiens)

organism:
Homo sapiens
Hepatitis B virus


title: Illumina NovaSeq 6000 (Halobacterium salinarum)

organism: Halobacterium salinarum


title: Illumina HiSeq 2500 (Aspergillus fumigatus; Klebsiella pneumoniae)

organism:
Klebsiella pneumoniae
Aspergillus fumigatus


title: DNBSEQ-G400 (Oryctolagus cuniculus)

organism: Oryctolagus cuniculus


title: Illumina NovaSeq 6000 (Haloferax volcanii)

organism: Haloferax volcanii


title: Illumina NovaSeq 6000 (Metarhizium robertsii ARSEF 23)

organism: Metarhizium robertsii ARSEF 23


title: Illumina HiSeq 3000 (Ambystoma mexicanum)

organism: Ambystoma mexicanum


title: NextSeq 550 (Caulobacter vibrioides)

organism: Caulobacter vibrioides


title: Illumina HiSeq 4000 (Saccharomyces pastorianus)

organism: Saccharomyces pastorianus


title: NextSeq 1000 (Mus musculus)

organism: Mus musculus


title: NextSeq 2000 (Caulobacter vibrioides CB15)

organism: Caulobacter vibrioides CB15


title: Step One Real time PCR-Applied Biosystems

city: New Delhi

first: Ankita

last: Ray

state: Delhi

address: Safdarjung hospital campus

country: India

institute: ICMR-National Institute of Pathology

organism: Homo sapiens

description: 96 well plate PCR assay panel


title: MGISEQ-2000RS (Rattus norvegicus)

organism: Rattus norvegicus


title: NextSeq 2000 (Bos taurus)


title: Illumina HiSeq 2500 (Arabidopsis halleri)

organism: Arabidopsis halleri


title: Illumina NovaSeq 6000 (Heterocephalus glaber)

organism: Heterocephalus glaber


title: Reverse Pharse Protein Array (RPPA)-MD Anderson Cancer Center

status: Public on Apr 27 2022

city: Santa Monica

first: Dave

last: Hoon

state: CA

address: 2200 Santa Monica Blvd.

department: Translational Molecular Medicine

institute: JWCI

technology: spotted peptide or protein

distribution: non-commercial

manufacturer: RPPA Core Facility at the University of Texas MD Anderson Cancer Center


title: HiSeq X Ten (Venturia inaequalis)

organism: Venturia inaequalis


title: NanoString Mouse nCounter Myeloid Innate Immunity Panel (NS_Mm_Myeloid_V2.0+PLS)

city: Atlanta

first: Jingru

last: Zhu

state: GA

address: 1365 E Clifton Rd NE Building C

department: Hematology/Oncology

institute: Winship Cancer Institute

technology: other

manufacture_protocol: See manufacturer's website (http://www.nanostring.com).


title: Qiagen RT2 Profiler Angiogenesis PCR Array (PAMM-024Z)

city: Miami

first: Zhao-Jun

last: Liu

state: FL

address: 1600 NW 10th Ave, RMSB 1010

department: Surgery

institute: University of Miami Miller School of Medicine

description:
PCR array
Mus musculus (FVB)


title: Qiagen RT2 Profiler Inflammatory Cytokines and Receptors PCR Array (PAMM-011Z)

description:
PCR array
Mus musculus (FVB)


title: HiSeq X Ten (Populus ussuriensis)

status: Public on Apr 20 2022

organism: Populus ussuriensis


title: Applied Biosystems, TaqMan® Low Density Array (TLDA) Human MicroRNA Card A

status: Public on Apr 26 2022

city: Rotterdam

first: Erik

last: Wiemer

address: Wytemaweg 80

department: Medical Oncology

country: Netherlands

institute: Erasmus University Medical Center

description: PCR assay


title: Agilent-052909 CBC_lncRNAmRNA_V3 (Feature Number version)

status: Public on Apr 22 2022

description:
Arrays of this design have barcodes that begin with 16052909 or 2552909.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina NextSeq 500 (Micropterus salmoides)

organism: Micropterus salmoides


title: Illumina HiSeq 2000 (Borreliella burgdorferi)

organism: Borreliella burgdorferi


title: DNBSEQ-G50 (Danio rerio)

organism: Danio rerio


title: Illumina NovaSeq 6000 (Ostrinia furnacalis)

organism: Ostrinia furnacalis


title: tRF & tiRNA AB 7900 RT PCR

status: Public on Apr 12 2022

city: guangzhou

first: dianbo

last: long

state: guangdong

address: Zhongshan second road

country: China

institute: First Affiliated Hospital of Sun Yat-sen University

description: PCR assay


title: Human mRNA targets analyzed by SYBR Green qPCR

status: Public on Apr 18 2022

city: New Orleans

first: Heping

last: Cao

state: LA

address: 1100 Robert E. Lee Blvd

department: Southern Regional Research Center

institute: USDA-ARS

manufacture_protocol: Biosearch Technologies, Inc


title: NanoString nCounter MAX/FLEX

status: Public on Apr 16 2022

city: New York

first: Department of Pathology

last: NYU Langone Health

state: NY

address: 240 East 38th Street

department: Department of Pathology

institute: NYU Langone Health Ambulatory Care Center


title: NanoString Mouse nCounter Myeloid Innate Immunity Panel NS_Mm_Myeloid_V2.0+Pls

status: Public on Apr 02 2022

city: Jette

first: Thomas

last: Ertveldt

state: Brussels

address: Laarbeeklaan 103, E206

department: BMWE

country: Belgium

institute: Vrije Universiteit Brussel


title: Bio-Rad CFX96 Touch Real Time PCR Detection System [Ferret]

status: Public on Apr 01 2022

city: Madison

first: Bryan

last: Zabel

state: wi

address: 3329 Agriculture Dr

department: GEM

institute: International Flavors & Fragrances Inc

organism: Mustela putorius furo

description: PCR assay

manufacture_protocol:
The total RT reaction volume was 50 µL and RT was performed in a 96 well plate on a Bio-Rad CFX96 Touch Real Time PCR Detection System. After RT, the cDNA was diluted with nuclease free water to bring the final total volume up to 200 µL (4x dilution). 5 µL of diluted cDNA was used for qPCR analysis of the expression of gene of interest. The total PCR reaction volume was 15 µL per well (10 µL master mix + 5 µL cDNA sample) and the qPCR was performed on the CFX384 Touch Real-Time PCR Detection System (Bio-Rad) using the cycling conditions listed below:
Temperature
95°C; 2 minutes; 1 Cycle(s)
95°C; 10 seconds; 40 Cycle(s)
*60°C or 62°C; 45 seconds
*60 °C for CCL2, IFNα, IFNL1 and IL8
62 °C for all other genes (CCL5, CXCL10, IFNγ, IL10, IL1β, IL6, TLR8, TNFα, ACE2 and RPS18)
Each plate contains a positive control (prepared from stimulated ferret PBMC cells) in duplicate wells, an NTC in duplicate wells and all test samples in duplicate wells. Primer and probe sequences can be found in Supplemental Table 3.


title: Bio-Rad CFX96 Touch Real-Time PCR system

city: Durban

first: Christen

last: Erasmus

state: KwaZulu-Natal

address: 719 Umbilo Road, Durban

department: Medical Biochemistry

country: South Africa

institute: University of KwaZulu-Natal

description: PCR assay

manufacture_protocol: See manufacturer's website.


title: [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [revised gene name]

status: Public on Feb 20 2022

city: Louisville

first: Norman

middle: L

last: Lehman

state: Kentucky

address: CTRB Room 307, 505 South Hancock St.

institute: The University of Louisville

description: This platform contains updated gene names compared to GPL29677

distribution: commercial

manufacture_protocol: See manufacturer's web site.


title: Agilent-022357 JFEU_ver2

status: Public on Mar 30 2022

city: Matsuyama

first: Kei

last: Nakayama

address: 2-5 Bunkyo-cho

department: Center for Marine Environmental Studies

country: Japan

institute: Ehime University

organism: Paralichthys olivaceus


title: Coronavirus Antigen Microarray

status: Public on Apr 04 2022

city: Irvine

first: Rafael

last: de Assis

address: 3800 PARKVIEW LN APT 38A, Irvine, CA 92612

institute: University of California Irvine

organism:
Influenza A virus
Severe acute respiratory syndrome-related coronavirus
Middle East respiratory syndrome-related coronavirus
Severe acute respiratory syndrome coronavirus 2

description: SARS-CoV-2, SARS, MERS, Common Cold Coronavirus and Influenza


title: NextSeq 2000 (Rattus norvegicus)

last: GEO


title: Illumina NovaSeq 6000 (Caulobacter vibrioides)

organism: Caulobacter vibrioides


title: Illumina HiSeq 2000 (Yarrowia lipolytica CLIB122)

organism: Yarrowia lipolytica CLIB122


title: nCounter Mouse Immunology Panel [NS_Immunology_Mm_C2269+PLS_Mm_Imm_C7706]

city: Stanford

first: Anusha

last: Kalbasi

address: 269 Campus Drive

department: Radiation Oncology

institute: Stanford

organism: Mus musculus

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: nCounter Glial Profiling Panel

status: Public on Mar 18 2022

city: Indianapolis

first: Cristian

last: Lasagna-Reeves

state: IN

address: 320 West 15th Street

department: Anatomy & Cell Biology

institute: Indiana University School of Medicine

description: Oligonucleotide probes tagged with identifiers consisting of a unique sequences of multi-color fluorophores

manufacture_protocol: See manufacturer's website


title: Infinium Mouse Methylation BeadChip

status: Public on Apr 11 2022

city: Philadelphia

first: Wanding

last: Zhou

state: PA

address: 3501 Civic Center Blvd

department: Pathology and Lab Medicine

institute: Children's Hospital of Philadelphia

technology: spotted oligonucleotide