title: NanoString Custom CodeSet (Tukohama and PLS_Tukohama)

status: Public on Nov 29 2022

city: Toronto

first: Kevin

middle: P

last: Robb

state: Ontario

address: Krembil Research Institute 60 Leonard Avenue, Office 5KD416-K1 / Lab 5KD424-C1

country: Canada

institute: University Health Network

organism: Homo sapiens

technology: other

distribution: custom-commercial

manufacture_protocol:
see manufacturer's website
https://nanostring.com/wp-content/uploads/MAN-C0002-03_nCounter_CodeSet_Design.pdf


title: NanoString nCounter Custom mRNA expression Panel SQ-12616

status: Public on Nov 10 2022

city: Kingston

first: David

last: LeBrun

address: 88 Stuart street

department: Pathology and Molecular Medicine

institute: Queen's University

manufacture_protocol: See manufacturer's web site


title: NextSeq 550 (Porphyromonas gingivalis)

status: Public on Aug 31 2022

last: GEO

country: USA

organism: Porphyromonas gingivalis

technology: high-throughput sequencing

distribution: virtual


title: mtDNA of GenoChip Microarray (Geno 2.0)

status: Public on Nov 08 2022

city: Madison

first: Ayken

last: Askapuli

state: WI

address: 250 North Mills Street

department: Integrative Biology

institute: University of Wisconsin-Madison

technology: in situ oligonucleotide

description:
Illumina iScan system together with BeadChips
This platform represents only the mtDNA portion from the GenoChip Microarray.

manufacturer: Illumina arrays provided by the Gene by Gene Ltd., Houston, TX, USA


title: Illumina MiSeq (Chenopodium quinoa; Nicotiana benthamiana; Vitis vinifera)

status: Public on Aug 30 2022

organism:
Nicotiana benthamiana
Vitis vinifera
Chenopodium quinoa


title: NanoString Human nCounter PanCancer Immune Profiling Panel (NS_CancerImmune_V1.1)

status: Public on Oct 24 2022

city: Izmir

first: Mayda

last: Gursel

address: Dokuz Eylül Üniversitesi İnciraltı Yerleşkesi

department: Basic and Translational Research Program

country: Turkey

institute: Izmir Biomedicine and Genome Center

manufacture_protocol: See manufacturer's website.


title: Illumina MiSeq (Chenopodium quinoa; Vitis vinifera)

organism:
Vitis vinifera
Chenopodium quinoa


title: NextSeq 2000 (Eggerthella lenta DSM 2243)

organism: Eggerthella lenta DSM 2243


title: [HuGene-1_1-st] Affymetrix Human Gene 1.1 ST (Brainarray hugene10sthsentrezgcdf version 22.0.0)

status: Public on Oct 25 2022

city: Boston

first: Adam

middle: C

last: Gower

state: MA

address: 72 East Concord Street, E632

department: Department of Medicine

institute: Boston University School of Medicine


title: Illumina MiSeq (Chenopodium quinoa)

organism: Chenopodium quinoa


title: Illumina HiSeq 2500 (Fraxinus pennsylvanica)

organism: Fraxinus pennsylvanica


title: nCounter Breast Cancer 360 Panel

status: Public on Jan 30 2023

city: Taipei

first: Chia-Lang

last: Hsu

address: No. 7, Zhongshan S. Rd.

department: Department of Medical Research

country: Taiwan

institute: National Taiwan University Hospital

manufacture_protocol: See manufacturer's website (www.nanostring.com).


title: Customized nCounter PanCancer IO 360 Panel [770 + 20]

city: roskilde

first: Soraya

last: Naimy

state: Sjaelland

address: sygehusvej 9

department: department of pathology

country: Denmark

institute: zealand universityhospital

description: Zealand_university_hospital_pathology_lab_melanoma_research


title: Illumina MiSeq (Spinacia oleracea)

organism: Spinacia oleracea


title: Illumina MiSeq (Spinacia oleracea; Vitis vinifera)

organism:
Spinacia oleracea
Vitis vinifera


title: Illumina MiSeq (Nicotiana benthamiana; Vitis vinifera)

organism:
Nicotiana benthamiana
Vitis vinifera


title: Illumina MiSeq (Chenopodium quinoa; Nicotiana benthamiana; Nicotiana obtusifolia; Vitis vinifera)

organism:
Nicotiana benthamiana
Vitis vinifera
Chenopodium quinoa
Nicotiana obtusifolia


title: Illumina NovaSeq 6000 (Sclerotinia sclerotiorum)

status: Public on Aug 29 2022

organism: Sclerotinia sclerotiorum


title: Illumina HiSeq 4000 (Enterococcus faecalis OG1RF)

status: Public on Aug 26 2022

organism: Enterococcus faecalis OG1RF


title: Fluidigm Oak BioMark PCR assay.

status: Public on Aug 27 2022

city: Salamanca

first: Ivan

last: Fernandez Lopez

address: Cordel de Merinas 40

country: Spain

institute: IRNASA

organism: Quercus robur

technology: RT-PCR

description: PCR assay

manufacture_protocol: see manufacturer's website


title: R&D Systems Proteome Profiler Mouse Chemokine Array

status: Public on Aug 25 2022

city: Chiba

first: Junjie

last: Ao

state: Chiba

address: 1-8-1 Inohana, Chuo-ku

department: Department of Gastroenterology

country: Japan

institute: Graduate School of Medicine, Chiba University

organism: Mus musculus

technology: spotted peptide or protein

distribution: commercial


title: Illumina NovaSeq 6000 (Brassica juncea)

organism: Brassica juncea


title: Illumina NovaSeq 6000 (Panax ginseng)

organism: Panax ginseng


title: MinION (Pseudomonas aeruginosa)

status: Public on Aug 24 2022

organism: Pseudomonas aeruginosa


title: Illumina NovaSeq 6000 (Candidatus Rhabdochlamydia porcellionis)

organism: Candidatus Rhabdochlamydia porcellionis


title: Illumina NovaSeq 6000 (Sporolithon durum)

status: Public on Aug 23 2022

organism: Sporolithon durum


title: Illumina NextSeq 500 (Paracentrotus lividus)

organism: Paracentrotus lividus


title: Illumina NovaSeq 6000 (Porolithon cf. onkodes)

organism: Porolithon cf. onkodes


title: Illumina Infinium HumanOmni5-Quad BeadChip (InfiniumOmni5-4v1-2_A1)

status: Public on Aug 22 2022

city: Badalona

first: Manel

last: Esteller

state: Barcelona

address: Ctra. de Can Ruti, Cami de les Escoles s/n

department: Cancer and Leukemia Epigenetics and Biology Program (PEBCL)

institute: Josep Carreras Leukaemia Research Institute (IJC)

organism: Homo sapiens

technology: oligonucleotide beads

manufacture_protocol: See manufacturer's website


title: Illumina NovaSeq 6000 (Microbacterium resistens)

organism: Microbacterium resistens


title: UNAM Mouse 22K v1

city: Chihuahua

first: Susana

middle: Aideé

last: González-Chávez

state: Chihuahua

address: Circuito Universitario Campus II

department: Facultad de Medicina

country: Mexico

institute: Universidad Autónoma de Chihuahua

technology: spotted oligonucleotide

distribution: non-commercial

manufacturer: Unidad de Microarreglos, IFC UNAM, México

manufacture_protocol: The Mouse 65-mer oligo library from Sigma-Genosys oligo sets was used. It contains 22,000 gene specific oligonucleotide probes representing the 70% of mouse genome. Oligo library was resuspended to 50µM in Micro Spotting solution (ArrayIt Brand Products.). SuperAmine coated slides 25x75 mm (TeleChem International INC) were printed using SDDC robot (Virtek) with 48 pins (Y= 12 meta rows; X= 4 meta columns; Y1= 22 rows; X1= 22 columns; with a dot spacing of Y1= 190 micron and X1= 190 microns). Fixed at 80°C for 4 hours. For pre-hybridization the slides were re-hydrated with water vapor at 60°C, and fixed with two cycles of UV light (1200J). After boiling for two minutes at 92°C, slides were washed with 95% ethanol for one minute and prehybridzed in 5X SSC, 0.1% SDS and 1% BSA for one hour at 42°C.


title: Illumina MiSeq (Nicotiana benthamiana; Spinacia oleracea)

organism:
Spinacia oleracea
Nicotiana benthamiana


title: Illumina MiSeq (Arabidopsis thaliana; Vitis vinifera)

organism:
Arabidopsis thaliana
Vitis vinifera


title: Illumina HiSeq 2500 (Streptomyces clavuligerus)

organism: Streptomyces clavuligerus


title: Illumina NovaSeq 6000 (Notophthalmus viridescens)

organism: Notophthalmus viridescens


title: Illumina NovaSeq 6000 (Pasteurella multocida)

status: Public on Aug 20 2022

organism: Pasteurella multocida


title: Illumina MiSeq (Lactiplantibacillus plantarum)

status: Public on Aug 19 2022

organism: Lactiplantibacillus plantarum


title: NanoString Human V3 miRNA array (NanoString, Cat # CSO-MIR3-12)

city: Norfolk

first: Allison

middle: Heath

last: Mathiesen

state: VA

address: 700 W Olney Rd, Department of Physiology

institute: Eastern Virginia Medical School

manufacture_protocol: See manufacturer's website (www.nanostring.com)


title: NanoString PanCancer Progression Panel (NanoString, cat# XT-CSO-PROG1-12)


title: Illumina NextSeq 500 (Thermoanaerobacter ethanolicus)

status: Public on Aug 18 2022

organism: Thermoanaerobacter ethanolicus


title: nCounter TCR diversity panel

status: Public on Aug 21 2022

city: Bethesda

first: Mallikarjuna

middle: Rao

last: Gedda

state: MD

address: 6 Center Dr

institute: NEI


title: nCounter Host Response Panel v1.0


title: Illumina NovaSeq 6000 (Lumnitzera littorea)

organism: Lumnitzera littorea


title: Illumina NextSeq 500 (Thermotoga maritima)

organism: Thermotoga maritima


title: Illumina NovaSeq 6000 (Mchenga conophoros)

status: Public on Aug 17 2022

organism: Mchenga conophoros


title: Illumina NovaSeq 6000 (Filifactor alocis)

organism: Filifactor alocis


title: Illumina NovaSeq 6000 (Escherichia coli Nissle 1917)

organism: Escherichia coli Nissle 1917


title: Illumina NextSeq 500 (Xenoturbella bocki)

status: Public on Aug 16 2022

organism: Xenoturbella bocki


title: Illumina NovaSeq 6000 (Azoarcus olearius)

status: Public on Aug 15 2022

organism: Azoarcus olearius


title: Illumina NovaSeq 6000 (Homo sapiens; Vesicular stomatitis Indiana virus)

organism:
Homo sapiens
Vesicular stomatitis Indiana virus


title: miScript miRNA Assays for BioMark platform

status: Public on Aug 12 2022

city: LOS ANGELES

first: Neal

last: Yuan

state: CA

address: 8700 Beverly Blvd, Davis 1015

institute: Cedars-Sinai

organism: Homo sapiens


title: Illumina NovaSeq 6000 (Hungatella hathewayi)

status: Public on Aug 11 2022

organism: Hungatella hathewayi


title: Illumina HiSeq 4000 (Variovorax paradoxus)

status: Public on Aug 10 2022

organism: Variovorax paradoxus


title: Illumina NovaSeq 6000 (Pseudomonas donghuensis)

organism: Pseudomonas donghuensis


title: Illumina NovaSeq 6000 (Orbilia oligospora ATCC 24927)

organism: Orbilia oligospora ATCC 24927


title: Illumina NovaSeq 6000 (Hyla orientalis)

organism: Hyla orientalis


title: Illumina NextSeq 500 (Escherichia coli B)

organism: Escherichia coli B


title: Illumina NovaSeq 6000 (Adeno-associated virus)

organism: Adeno-associated virus


title: Illumina NovaSeq 6000 (Chlorops oryzae)

status: Public on Aug 09 2022

organism: Chlorops oryzae


title: BGISEQ-500 (Owenia fusiformis)

organism: Owenia fusiformis


title: NextSeq 2000 (Francisella tularensis subsp. holarctica LVS)

status: Public on Aug 08 2022


title: HiSeq X Ten (Puccinia graminis f. sp. tritici)

status: Public on Aug 04 2022

organism: Puccinia graminis f. sp. tritici


title: Illumina MiSeq (Sorghum bicolor)

status: Public on Aug 03 2022

organism: Sorghum bicolor


title: Taqman OpenArray Human Advanced microRNA Panel

city: Milan

first: Loris

last: De Cecco

address: via Venezian 1

country: Italy

institute: IRCSS Istituto Nazionale Tumori

manufacture_protocol: see manufacturer's website: http://www.lifetechnologies.com/


title: Illumina HiSeq 2000 (Komagataeibacter europaeus)

organism: Komagataeibacter europaeus


title: HiSeq X Ten (Porphyromonas gingivalis W83)

status: Public on Aug 06 2022

organism: Porphyromonas gingivalis W83


title: Illumina NovaSeq 6000 (mouse gut metagenome; Mus musculus)

organism:
Mus musculus
mouse gut metagenome


title: Illumina NovaSeq 6000 (Oncorhynchus tshawytscha)

organism: Oncorhynchus tshawytscha


title: Illumina NextSeq 500 (Acartia tonsa)

organism: Acartia tonsa


title: Qiagen Human Serum & Plasma microRNA PCR array plate (MIHS-106Z)

city: São Paulo

first: Talita

middle: Souza

last: Siqueira

state: São Paulo

address: Galvão Bueno, 868 - Liberdade

department: Interdisciplinary Post-Graduate Program in Health Sciences

country: Brazil

institute: Cruzeiro do Sul University

organism: Homo sapiens

description:
PCR assay
Extracellular Vesicle miRNA concentrations were measured using the Human Serum & Plasma microRNA PCR array plate (MIHS-106Z, Qiagen, Hilden, Düsseldorf, Germany).

manufacture_protocol: For the PCR array analysis, 12.5 µL SYBR Green PCR Master Mix, 2.5 µL Universal Prime (10×), 9 µL RNase water-free and 1 µL pre-amplified cDNA (total volume=25 µL) was added to each well of the miRNA PCR Array plate. The plate was centrifuged at 1,000×g for one minute at room temperature. Data were recorded with a QuantStudio 3 device and analyzed using the QuantStudio 3 Design and Analysis Software v1.5.1 (Thermo).


title: Illumina NovaSeq 6000 (mouse gut metagenome)

organism: mouse gut metagenome


title: Cancer Transcriptomic Atlas, Human, 1812 genes, Nanostring GeoMx Digital Spatial Profiling (DSP) Platform

city: Lausanne

first: François

last: Kuonen

address: Av. de Beaumont 29

country: Switzerland

institute: CHUV

manufacture_protocol: See manfacturer's website


title: NanoString Human nCounter MPM_C9073

city: Reggio Emilia

first: Benedetta

last: Donati

address: Viale Risorgimento, 80

institute: Azienda USL- IRCCS di Reggio Emilia

description: custom panel MPM_C9073


title: Agilent-086791 Rat CpG 400K island Microarray

city: Daejeon

first: Minhyeok

last: Lee

address: 158, Gwanjeodong-ro, Seo-gu

department: Department of Internal Medicine

country: South Korea

institute: Konyang university hospital

organism: Rattus norvegicus

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 2000 (Francisella tularensis subsp. tularensis SCHU S4)

last: GEO


title: NanoString Sus scrofa AgR-BP-77

status: Public on Aug 05 2022

city: Palmerston North

first: Ankita

last: Jena

state: MANAWATU-WANGANUI

address: Massey University Manawatu (Turitea), Tennent Drive

country: New Zealand

institute: Riddet institute, Massey university

organism: Sus scrofa

manufacturer: NanoString Technologies, Inc.; Seattle, WA


title: Agilent-078957 sugarcane

status: Public on Aug 02 2022

city: Fuzhou

first: Ning

last: Huang

state: Fujian

address: Cangshan Distrc,Shangxia Dian Road 15

country: China

institute: Fujian Agriculture and Forestry University

organism: Saccharum sp. complex hybrid


title: FL NannoGad PCR pannel

city: Cuernavaca

first: Daniela

last: Morales Sanchez

state: Morelos

address: Av. Universidad 2000

department: Instituto de Biotecnologia

institute: Universidad Nacional Autonoma de MExico

organism: Nannochloropsis gaditana

description:
Nannochloropsis gaditana CCAP 849/5
LightCycler96 PCR assay panel
LightCycler96 PCR Roche Molecular Systems, Inc.


title: Illumina HiSeq 2500 (Mikania micrantha)

organism: Mikania micrantha


title: Nanostring nCounter Mouse AutoImmune Profiling + Custom Panel PLUS (PLS_Ali_MSp)

city: RIVERSIDE

first: Declan

last: McCole

address: 3401 Watkins Drive

department: Biomedical Sciences

institute: University of California Riverside

organism: Mus musculus

manufacture_protocol: Support Documentation | NanoString


title: Nanostring nCounter Mouse PanCancer Pathways + Custom Panel PLUS (PLS_vinican 32347)


title: NextSeq 2000 (Sus scrofa)


title: BGISEQ-500 (Ovis aries)

status: Public on Aug 01 2022

organism: Ovis aries


title: Illumina NovaSeq 6000 (Penaeus vannamei)

organism: Penaeus vannamei


title: Illumina HiSeq 2500 (Solanum melongena)

organism: Solanum virginianum


title: Agilent-060509 Zebrafish Expression Zv9 2013 (feature number version)

status: Public on Feb 17 2017

city: West Lafayette

first: Jennifer

last: Freeman

state: IN

address: 550 Stadium Mall Drive

department: School of Health Sciences

institute: Purdue University

organism: Danio rerio

description:
Includes all 128,291 probes + 44K design and others

Arrays of this design have barcodes that begin with 16060509 or 2560509.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

relation: Alternative to: GPL20834 (Probe name version)


title: Illumina HiSeq 2500 (Ooceraea biroi)

organism: Ooceraea biroi


title: Agilent-072075 Danio rerio CGH array ZFishCGH_Zv9_Dec2014 G4124A (Feature number version)

status: Public on Feb 20 2017

description:
Arrays of this design have barcodes that begin with 16072075 or 2572075

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: 100718_Zv7_EXPR_HX12 NimbleGen Zebrafish 12x135K array

status: Public on Sep 01 2017

description: Design Name=100718_Zv7_EXPR_HX12, Barcode=537809, A multiplex format of 12 arrays each of which contains 135,000 of 60-mer oligonucleotide probes covering 38,489 targets (i.e., 3 probes per target).

manufacture_protocol: The high-density DNA microarray was prepared by Maskless Array Synthesizer (MAS) technology.


title: 080125_Majewski_HG18chr13q14

status: Public on Jul 16 2018

city: Houston

first: Bogdan

last: Czerniak

state: TX

address: 1515 Holcombe

department: Pathology

institute: UT MD Anderson Cancer Center

description: NimbleGen design name 080125_Majewski_HG18chr13q14.  A custom tiling array interrogating a 5MB window around Rb1. Matching probes (PM) roughly every 9bp.  The design includes random GC and other control probes.

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.


title: HorvathMammalMethylChip320

city: Los Angeles

first: Steve

last: Horvath

address: 695 Charles E. Young Drive South, Box 708822

department: Human Genetics

institute: University of California, Los Angeles

organism:
Macaca mulatta
Homo sapiens
Mus musculus
Rattus


title: Illumina NovaSeq 6000 (Escherichia coli CFT073)

status: Public on Aug 25 2022

organism: Escherichia coli CFT073