title: Canine IO NanoString Probeset

status: Public on Aug 29 2023

city: North Grafton

first: Jillian

middle: M

last: Richmond

state: Massachusetts

address: 200 Westboro Road

department: Comparative Pathobiology

country: USA

institute: Tufts Cummings School of Veterinary Medicine

organism: Canis lupus familiaris

technology: other

distribution: custom-commercial


title: Illumina HiSeq 2000 (Klebsiella pneumoniae KP-1)

status: Public on Sep 30 2022

last: GEO

organism: Klebsiella pneumoniae KP-1

technology: high-throughput sequencing

distribution: virtual


title: PromethION (Fraxinus excelsior)

organism: Fraxinus excelsior


title: Illumina HiSeq 2500 (Microcystis aeruginosa FACHB-905 = DIANCHI905)


title: Illumina HiSeq 2000 (Fraxinus excelsior)


title: Illumina HiSeq 2000 (Pseudomonas protegens Pf-5)

organism: Pseudomonas protegens Pf-5


title: Illumina HiSeq 2000 (Klebsiella pneumoniae KP-1; Pseudomonas aeruginosa PAO1; Pseudomonas protegens Pf-5)

organism:
Pseudomonas aeruginosa PAO1
Pseudomonas protegens Pf-5
Klebsiella pneumoniae KP-1


title: NanoString nCounter Mouse Host Response V1.0 Panel

status: Public on Oct 25 2022

city: Leuven

first: Johan

last: Van Weyenbergh

address: Herestraat 49

department: DMIT

country: Belgium

institute: KU Leuven

organism: Homo sapiens

technology: in situ oligonucleotide

manufacture_protocol: Host Response | NanoString


title: Illumina MiniSeq (Escherichia coli B)

status: Public on Sep 29 2022

organism: Escherichia coli B


title: HiSeq X Ten (Coccomyxa subellipsoidea C-169)

status: Public on Sep 28 2022

organism: Coccomyxa subellipsoidea C-169


title: Illumina NovaSeq 6000 (Rhododendron)

organism: Rhododendron


title: PromethION (Glycyrrhiza uralensis)

organism: Glycyrrhiza uralensis


title: Sequel II (Heterocephalus glaber)

organism: Heterocephalus glaber


title: Illumina HiSeq 4000 (Graphilbum sp.)

status: Public on Sep 26 2022

organism: Graphilbum sp.


title: Agilent-084409 Rat lncRNA Microarray V3 (8*60K)

city: Hang Zhou

first: jiang

last: zhengyi

state: State...

address: Qingchun  79 Road

country: China

institute: Zhejiang University

organism: Rattus norvegicus

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: NextSeq 2000 (Pectobacterium carotovorum subsp. carotovorum)

status: Public on Sep 23 2022


title: Illumina NovaSeq 6000 (Penicillium italicum)

organism: Penicillium italicum


title: ABI PRISM 7900HT Sequence Detection System (Applied Biosystems, Waltham, USA)

status: Public on Sep 27 2022

city: Starkville

first: Esteban

last: Galeano

state: Mississippi

address: 775 Stone Blvd, 351 Thompson Hall, Mississippi State

institute: Mississippi State University

organism: Picea glauca

technology: RT-PCR

description: RT-PCR assay

manufacture_protocol: see manufacturer's website


title: nCounter PanCancerImmune panel

city: Foster City

first: Natahlie

last: Scholler

state: CA

address: 324 Likeside Drive FC324-1

department: Oncology Research Department

institute: Gilead

description: Targeted gene expression profiling


title: NextSeq 550 (Solanum tuberosum)

status: Public on Sep 22 2022

organism: Solanum tuberosum


title: DNBSEQ-G400 (Physcomitrium patens)

organism: Physcomitrium patens


title: Illumina HiSeq 2500 (Babesia bigemina)

status: Public on Sep 24 2022

organism: Babesia bigemina


title: Illumina HiSeq 4000 (Ichthyophthirius multifiliis)

organism: Ichthyophthirius multifiliis


title: Illumina NextSeq 500 (Thermochaetoides thermophila)

organism: Thermochaetoides thermophila


title: Canine custom Nanostring Probeset - 48 genes

city: Fort Collins

first: Daniel

last: Regan

address: 1678 Campus Delivery

institute: Colorado State University

organism: Canis lupus familiaris


title: Applied Biosystems PCR assay of apple cyclophilin genes under drought stress

city: taian

first: Zhiwen

last: Qiao

state: China

address: shandongtaian

institute: Shandong Agricultural University

organism: Malus domestica

description:
PCR assay
product type: StepOnePlus

distribution: commercial

manufacturer: Applied Biosystems by Thermo Fisher Scientific


title: Illumina NovaSeq 6000 (Setaria italica)

status: Public on Sep 21 2022

organism: Setaria italica


title: Illumina NextSeq 500 (Citrullus lanatus)

status: Public on Sep 19 2022

organism: Citrullus lanatus


title: Illumina HiSeq 4000 (Bos indicus x Bos taurus)

status: Public on Sep 16 2022

organism: Bos indicus x Bos taurus


title: DNBSEQ-G400 (Thermothelomyces thermophilus ATCC 42464)


title: Illumina NovaSeq 6000 (Carica papaya)

status: Public on Sep 15 2022

organism: Carica papaya


title: Illumina NextSeq 500 (Homo sapiens; Plasmodium berghei)

organism:
Plasmodium berghei
Homo sapiens


title: Illumina NextSeq 500 (Nodularia spumigena CCY9414)

organism: Nodularia spumigena CCY9414


title: Illumina NovaSeq 6000 (Thermothelomyces thermophilus ATCC 42464)


title: Illumina NovaSeq 6000 (Oscheius tipulae)

organism: Oscheius tipulae


title: Illumina HiSeq 2500 (Drosophila mojavensis)

status: Public on Sep 14 2022

organism: Drosophila mojavensis


title: GridION (Drosophila melanogaster)

organism: Drosophila melanogaster


title: NextSeq 2000 (Astyanax mexicanus)

organism: Astyanax mexicanus


title: Illumina HiSeq 2500 (Drosophila pseudoobscura)

organism: Drosophila pseudoobscura


title: Illumina HiSeq 2500 (Drosophila bifasciata)

organism: Drosophila bifasciata


title: Illumina HiSeq 2500 (Coturnix japonica)

status: Public on Sep 13 2022

organism: Coturnix japonica


title: Illumina NextSeq 500 (Pseudomonas aeruginosa CF18)

status: Public on Sep 09 2022

organism: Pseudomonas aeruginosa CF18


title: MGISEQ-2000RS (Gallus gallus)

organism: Gallus gallus


title: Illumina MiSeq (other sequences)

status: Public on Sep 08 2022

organism: other sequences


title: Illumina NovaSeq 6000 (Streptomyces venezuelae)

organism: Streptomyces venezuelae


title: Illumina NovaSeq 6000 (Frankliniella occidentalis)

status: Public on Sep 10 2022

organism: Frankliniella occidentalis


title: Illumina HiSeq 2500 (Dromaius novaehollandiae)

organism: Dromaius novaehollandiae


title: Illumina HiSeq 2500 (Hermanssonia centrifuga)

organism: Hermanssonia centrifuga


title: Illumina HiSeq 2500 (Drosophila eugracilis)

organism: Drosophila eugracilis


title: Illumina HiSeq 4000 (Scotinomys teguina)

organism: Scotinomys teguina


title: Illumina NovaSeq 6000 (Frankliniella intonsa)

organism: Frankliniella intonsa


title: Illumina NovaSeq 6000 (Scotinomys teguina)


title: DNBSEQ-G400 (Ceratopteris richardii)

status: Public on Sep 07 2022

organism: Ceratopteris richardii


title: Illumina HiSeq 2500 (Trametes pubescens)

organism: Trametes pubescens


title: Illumina NextSeq 500 (Mycobacterium avium subsp. hominissuis)

status: Public on Sep 11 2022

organism: Mycobacterium avium subsp. hominissuis


title: NanoString Human nCounter PanCancer IO 360 Panel

status: Public on Sep 20 2022

city: Bordeaux

first: ELodie

last: Darbo

address: 229 cours de l'Argonne

department: INSERM

country: France

institute: University of Bordeaux

organism: Homo sapiens

description: The nCounter® PanCancer IO 360 Panel includes 750 genes that cover the key pathways at the interface of the tumor, tumor microenvironment, and immune response; in addition, there are 20 internal reference genes for data normalization.

manufacture_protocol: See manufacturer's website (www.nanostring.com).


title: NextSeq 550 (Pseudomonas putida KT2440)

organism: Pseudomonas putida KT2440


title: Illumina NovaSeq 6000 (Bos grunniens x Bos taurus)

organism: Bos grunniens x Bos taurus


title: RT2 Profiler PCR array of FoxO1 related genes in mice cardiomyocytes

status: Public on Sep 12 2022

city: Stanford

first: Siavash

last: Moghadami

address: 299 Campus Drive, Fairchild Science Building, Room D236

department: Neurobiology

institute: Stanford University

organism: Mus musculus

description: PCR assay


title: HiSeq X Ten (Reishia clavigera)

status: Public on Sep 06 2022

organism: Reishia clavigera


title: Illumina HiSeq 2500 (Pavo cristatus)

organism: Pavo cristatus


title: Illumina HiSeq 2500 (Morchella sextelata)

organism: Morchella sextelata


title: Agilent-077398 CN1_neo3  G4821A

city: Edinburgh

first: Catherine

last: Naughton

address: Crewe Road

department: MRC Human Genetics Unit

country: United Kingdom

institute: University of Edinburgh

description:
Arrays of this design have barcodes that begin with 16077398 or 2577398

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: NanoString nCounter Human GX PanCancer Pathway Panel and Custom Probe Set

status: Public on Sep 05 2022

city: Beijing

first: Min

last: Yin

address: Dongcheng

institute: Peking Union Medical College Hospital

manufacture_protocol: See manufacturer's website http://www.nanostring.com


title: Agilent-053809 CN1_centromere

description:
Mapping supercoiling

Arrays of this design have barcodes that begin with 16053809 or 2553809.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: BGISEQ-500 (Acer pictum subsp. mono)

organism: Acer pictum subsp. mono


title: DNBSEQ-G400 (Plasmodium berghei)

organism: Plasmodium berghei


title: Illumina HiSeq 4000 (Octopus bimaculoides)

status: Public on Sep 01 2022

organism: Octopus bimaculoides


title: Illumina HiSeq 2500 (Acer pictum subsp. mono)

status: Public on Sep 03 2022


title: Illumina NovaSeq 6000 (Homo sapiens/Mus musculus xenograft)

status: Public on Sep 04 2022

organism: Homo sapiens/Mus musculus xenograft


title: Sequel II (Nannochloropsis oceanica)

status: Public on Sep 02 2022

organism: Nannochloropsis oceanica


title: Duke/RG_EtsRunx_v1_Mar2020

city: Durham

first: Raluca

last: Gordan

state: NC

address: 101 Science Dr, CIEMAS 2179

department: Center for Genomic and Computational Biology

institute: Duke University

manufacture_protocol: In situ oligosynthesized array with proprietary synthetic sequences that target Ets1 and Runx1 putative binding sites in genomic context.


title: TaqMan Array Human MicroRNA Custom Card #4449140

city: Portland

first: Julie

middle: A

last: Saugstad

state: Oregon

address: 3181 SW Sam Jackson Park Road

department: Anesthesiology & Perioperative Medicine

institute: Oregon Health & Science University

description: TLDA Plate Ports: Assay 1 on Ports 1-4, Assay 2 on Ports 5-8.

manufacturer: Life Technologies/Thermo Fisher Scientific

manufacture_protocol: See manufacturer's website.


title: Agilent-083208 Mycobacterium tuberculosis

city: CDMX

first: Addy

middle: Cecilia

last: Helguera-Repetto

state: CDMX

address: Montes Urales

department: Inmunobioquímica

country: Mexico

institute: Instituto Nacional de Perinatología "Isidro Espinosa de los Reyes"

organism: Mycobacterium tuberculosis

description:
Arrays of this design have barcodes that begin with 16083208 or 2583208.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-064079 Mustela putorius furo (ferret) array

city: Valencia

first: Laura

last: Ramirez

address: Eduardo Primo Yufera

department: Genomics

country: Spain

institute: CIPF

organism: Mustela putorius furo

description:
Arrays of this design have barcodes that begin with 16064079 or 2564079.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NovaSeq 6000 (Nothobranchius furzeri)

organism: Nothobranchius furzeri


title: Illumina NextSeq 500 (Bordetella pertussis Tohama I)

organism: Bordetella pertussis Tohama I


title: miRCURY LNA miRNA panel I+II (V5, Qiagen, U.S.A.)

city: Brno

first: Jaroslav

last: Juracek

address: Kamenice 5

country: Czech Republic

institute: CEITEC MU

description: PCR assay


title: NextSeq 2000 (Marseillevirus marseillevirus)

organism: Marseillevirus marseillevirus


title: TaqMan Array Human MicroRNA A+B Cards Set v3.0, #4444913

organism: Homo sapiens


title: Duke/RG_CoopPBM_Ets1_v1_Sep2019

manufacture_protocol: In situ oligosynthesized array with proprietary synthetic sequences that target Ets1 putative binding sites in genomic context.


title: Illumina HiSeq 3000 (Sphingomonas melonis TY)

organism: Sphingomonas melonis TY


title: Illumina HiSeq 2500 (Carassius auratus)

organism: Carassius auratus


title: Agilent SSU 8 x 15K (Gene version)

city: Wageningen

first: Peter

last: van Baarlen

address: De Elst 1

department: Animal Sciences

country: Netherlands

institute: Wageningen University

organism: Streptococcus suis

manufacture_protocol: SSU 8 x 15K is produced by Agilent Technologies, according to their standard protocols: Both catalog and custom microarrays are manufactured using a proprietary non-contact industrial inkjet printing process, in which oligo monomers are deposited uniformly onto specially-prepared glass slides. This in situ synthesis process prints 60-mer length oligonucleotide probes, base-by-base, from digital sequence files. The precise inkjet process enables the delivery of extremely small, accurate volumes (picoliters) of the chemicals to be spotted. Standard phosphoramidite chemistry used in the reactions allows for very high coupling efficiencies to be maintained at each step in the synthesis of the full-length oligonucleotide. Precise quantities are reproducibly deposited on the fly. This engineering feat is achieved without stopping, to make contact with the slide surface and without introducing surface-contact feature anomalies, resulting in consistent spot uniformity and traceability. In addition, multiple microarrays can be printed simultaneously in a single manufacturing run.


title: Illumina Infinium MouseMethylation array (MouseMethylation-12v1-0_A2)

status: Public on Sep 23 2022

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Mus musculus

technology: oligonucleotide beads

description: Date Manufactured 3/29/2021

manufacture_protocol: See manufacturer's website


title: NextSeq 2000 (synthetic construct)

last: GEO

organism: synthetic construct