title: Illumina NovaSeq 6000 (Cupriavidus basilensis)

status: Public on Oct 28 2022

last: GEO

country: USA

organism: Cupriavidus basilensis

technology: high-throughput sequencing

distribution: virtual


title: Illumina NovaSeq 6000 (Homo sapiens; Macaca mulatta)

status: Public on Oct 31 2022

organism:
Macaca mulatta
Homo sapiens


title: Illumina NextSeq 500 (Stenotrophomonas maltophilia)

organism: Stenotrophomonas maltophilia


title: Microarrays of Escherichia coli encoded tRNAs

status: Public on Nov 15 2022

city: Hamburg

first: Zoya

last: Ignatova

address: Martin -Luther-King-Platz 6

country: Germany

institute: Universitaet Hamburg

organism: Escherichia coli

technology: spotted oligonucleotide

distribution: non-commercial

manufacturer: Fraunhofer Institute for Biomedical Research (Potsdam, Germany)

manufacture_protocol:
1. Oligos were arrayed in 384 well plates with a final concentration of 10 µM in 3× SSC/0.01% SDS in a total volume of 25 µl.
2. Arrays were printed onto (3-Glycidyloxypropyl)trimethoxysilane (Sigma) activated glas slides using a contact-spotter (QArray 2, Moleculare Devices).
3. After spotting arrays were incubated overnight at 4°C in a humidified atmosphere and subsequently dried for 30 min at 30°C.
4. Arrays were stored in a dry atmosphere at room temperature until use.


title: Illumina HiSeq 2000 (Stenotrophomonas maltophilia)


title: Ion GeneStudio S5 (Mus musculus)

organism: Mus musculus


title: NextSeq 550 (Synthetic plasmid)

status: Public on Oct 27 2022

organism: Synthetic plasmid


title: Ion Torrent PGM (Neurospora crassa)

status: Public on Oct 25 2022

organism: Neurospora crassa


title: Illumina NovaSeq 6000 (Methanococcus maripaludis)

organism: Methanococcus maripaludis


title: Illumina MiSeq (unidentified)

status: Public on Oct 26 2022

organism: unidentified


title: TaqMan Low Density Arrays (TLDA) pools A and B (Applied Biosystems)

city: Bologna

first: Gloria

last: Ravegnini

state: BO

address: via irnerio 48

department: PHARMACY AND BIOTECHNOLOGY

country: Italy

institute: UNIVERSITY OF BOLOGNA

organism: Homo sapiens

technology: RT-PCR

description: 384-well microfluidic card format; primer-probe detection method

distribution: custom-commercial

manufacture_protocol: see manufacturer's website


title: Illumina NovaSeq 6000 (Botrytis cinerea)

organism: Botrytis cinerea


title: Illumina NovaSeq 6000 (Populus deltoides)

organism: Populus deltoides


title: Illumina NovaSeq 6000 (Brevundimonas diminuta; Stutzerimonas balearica)

organism:
Brevundimonas diminuta
Stutzerimonas balearica


title: Illumina NovaSeq 6000 (Stutzerimonas balearica)

organism: Stutzerimonas balearica


title: Illumina NovaSeq 6000 (Sordaria macrospora)

organism: Sordaria macrospora


title: Illumina NovaSeq 6000 (Brevundimonas diminuta)

organism: Brevundimonas diminuta


title: Illumina HiSeq 4000 (Dependoparvovirus)

status: Public on Oct 24 2022

organism: Dependoparvovirus


title: Illumina NovaSeq 6000 (Dependoparvovirus)


title: HiSeq X Ten (Mycobacterium tuberculosis H37Rv)

organism: Mycobacterium tuberculosis H37Rv


title: Illumina HiSeq 1500 (Lotus japonicus)

organism: Lotus japonicus


title: HiSeq X Ten (Bacillus thuringiensis serovar kurstaki str. HD73)

status: Public on Oct 21 2022


title: Illumina NovaSeq 6000 (Dugesia japonica)

organism: Dugesia japonica


title: HiSeq X Ten (Malus x robusta)

organism: Malus x robusta


title: Illumina MiSeq (Dependoparvovirus)


title: Illumina MiSeq (Rhizobium phaseoli)

status: Public on Oct 23 2022

organism: Rhizobium phaseoli


title: Illumina HiSeq 2500 (Bacteria)

organism: Bacteria


title: Illumina HiSeq 2000 (Lens culinaris)

status: Public on Oct 20 2022

organism: Lens culinaris


title: Illumina NextSeq 500 (Penicillium digitatum)

organism: Penicillium digitatum


title: DNBSEQ-G400 (Pseudomonas entomophila L48)

status: Public on Oct 18 2022

organism: Pseudomonas entomophila L48


title: Illumina MiSeq (Enterobacter cloacae)

organism: Enterobacter cloacae


title: Illumina HiSeq 4000 (Camellia sinensis var. assamica)

organism: Camellia sinensis var. assamica


title: Illumina NextSeq 500 (Ceratotherium simum simum)

organism: Ceratotherium simum simum


title: Illumina NovaSeq 6000 (Dasypus novemcinctus)

organism: Dasypus novemcinctus


title: Illumina MiSeq (Klebsiella pneumoniae)

organism: Klebsiella pneumoniae


title: Illumina MiSeq (Citrobacter rodentium)

organism: Citrobacter rodentium


title: NanoString nCounter® Rat Digital Analyzer

city: La Jolla

first: Martin

last: Spang

state: CA

address: 2880 Torrey Pines Scenic Dr

institute: University of California, San Diego

organism: Rattus

technology: other

manufacture_protocol: See manufacturer's website (www.nanostring.com).


title: Illumina HiSeq 2500 (Luscinia luscinia)

status: Public on Oct 17 2022

organism: Luscinia luscinia


title: Illumina NovaSeq 6000 (Pleurotus tuoliensis)

organism: Pleurotus tuoliensis


title: IFC UNAM Mouse 22K v1 [GB_ACC version]

city: Chihuahua

first: Susana

middle: Aideé

last: González-Chávez

state: Chihuahua

address: Circuito Universitario Campus II

department: Facultad de Medicina

country: Mexico

institute: Universidad Autónoma de Chihuahua

organism: Mus musculus

description: This is a condensed, GB_ACC version of the official IFC UNAM Mouse 22K v1 GPL18099 array.

manufacturer: Unidad de Microarreglos, IFC UNAM, México

manufacture_protocol: The Mouse 65-mer oligo library from Sigma-Genosys oligo sets was used. It contains 22,000 gene specific oligonucleotide probes representing the 70% of mouse genome. Oligo library was resuspended to 50µM in Micro Spotting solution (ArrayIt Brand Products.). SuperAmine coated slides 25x75 mm (TeleChem International INC) were printed using SDDC robot (Virtek) with 48 pins (Y= 12 meta rows; X= 4 meta columns; Y1= 22 rows; X1= 22 columns; with a dot spacing of Y1= 190 micron and X1= 190 microns). Fixed at 80°C for 4 hours. For pre-hybridization the slides were re-hydrated with water vapor at 60°C, and fixed with two cycles of UV light (1200J). After boiling for two minutes at 92°C, slides were washed with 95% ethanol for one minute and prehybridzed in 5X SSC, 0.1% SDS and 1% BSA for one hour at 42°C.


title: Illumina NovaSeq 6000 (Perna viridis)

organism: Perna viridis


title: Illumina NovaSeq 6000 (Influenza A virus (A/WSN/1933(H1N1)))

organism: Influenza A virus (A/WSN/1933(H1N1))


title: Illumina HiSeq 2000 (Methanocaldococcus jannaschii)

status: Public on Oct 19 2022

organism: Methanocaldococcus jannaschii


title: University of Copenhagen Porcine Kidney Gene Expression PCR array

city: Frederiksberg C

first: Lisbeth Høier

last: Olsen

address: Ridebanevej 9

department: Veterinary and Animal Sciences

country: Denmark

institute: University of Copenhagen

organism: Sus scrofa

description: PCR assay

manufacture_protocol: see manufacturer website


title: Illumina HiSeq 4000 (Citrus reticulata)

organism: Citrus reticulata


title: TaqMan® OpenArray® Custom Genotyping Plates

city: Madrid

first: Lara

last: Fernández

state: Madrid

address: Carretera Cantoblanco 8

country: Spain

institute: IMDEA Food

organism: Homo sapiens

description: TaqMan® SNP Genotyping Assays


title: PromethION (Thermus thermophilus HB8)

status: Public on Oct 14 2022

organism: Thermus thermophilus HB8


title: Illumina HiSeq 4000 (Thermus thermophilus HB8)


title: Illumina HiSeq 3000 (Plasmodium falciparum)

status: Public on Oct 13 2022

organism: Plasmodium falciparum


title: Illumina HiSeq 2500 (Scophthalmus maximus)

organism: Scophthalmus maximus


title: Illumina NextSeq 500 (Mus musculus; Plasmodium berghei)

status: Public on Oct 12 2022

organism:
Plasmodium berghei
Mus musculus


title: Nanostring nCounter Custom Codeset_Lipid Metabolism_OTierneyGinn_1

city: Boston

first: Perrie

last: O'Tierney-Ginn

state: MA

address: 800 Washington Street

department: Mother Infant Research Institute

institute: Tufts Medical Center

manufacture_protocol: See Manufacturer's website (https://nanostring.com/)


title: Agilent-081421 Horse_60K_2016_01_22 021322 [Probe name version]

status: Public on Oct 11 2022

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Equus caballus

technology: in situ oligonucleotide

description:
Arrays of this design have barcodes that begin with 16081421 or 2581421.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Name.

manufacture_protocol: See manufacturer's web site at: http://www.agilent.com/


title: Illumina NovaSeq 6000 (Escherichia coli W)

status: Public on Oct 10 2022

organism: Escherichia coli W


title: Illumina HiSeq 4000 (Cryptococcus gattii VGI)

organism: Cryptococcus gattii


title: Illumina NovaSeq 6000 (Helicoverpa armigera)

status: Public on Oct 08 2022

organism: Helicoverpa armigera


title: Illumina NextSeq 500 (Corynebacterium matruchotii; Streptococcus mutans UA159)

status: Public on Oct 07 2022

organism:
Corynebacterium matruchotii
Streptococcus mutans UA159


title: Illumina NextSeq 500 (Streptococcus mutans UA159; Streptococcus sobrinus)

organism:
Streptococcus sobrinus
Streptococcus mutans UA159


title: Illumina NextSeq 500 (Lacticaseibacillus casei; Streptococcus mutans UA159)

organism:
Lacticaseibacillus casei
Streptococcus mutans UA159


title: Illumina HiSeq 2500 (Arvicanthis niloticus)

organism: Arvicanthis niloticus


title: Illumina HiSeq 2500 (Luscinia megarhynchos)

organism: Luscinia megarhynchos


title: Illumina HiSeq 2500 (Brucella melitensis M5-90)

organism: Brucella melitensis M5-90


title: Sequel II (Influenza A virus (A/California/04/2009(H1N1)))

status: Public on Oct 06 2022


title: Illumina HiSeq 2000 (Canis lupus familiaris; Influenza A virus (A/California/04/2009(H1N1)))

organism:
Canis lupus familiaris
Influenza A virus (A/California/04/2009(H1N1))


title: Illumina MiSeq (Influenza A virus (A/California/04/2009(H1N1)))


title: Nanostring nCounter Human Immunology V2 with panel plus

city: TOULOUSE

first: Pauline

last: Gravelle

address: 1 Avenue Irène Joliot Curie

department: Anatomy-Pathology

country: France

institute: IUCT-ONCOPOLE

description: Molecular barcoding and digital quantification of target RNA or DNA sequences


title: DNBSEQ-G400 (Thermothelomyces thermophilus)

organism: Thermothelomyces thermophilus


title: Sequel II (Patiria miniata)

status: Public on Oct 03 2022

organism: Patiria miniata


title: Illumina NovaSeq 6000 (Actinidia deliciosa)

status: Public on Oct 04 2022

organism: Actinidia deliciosa


title: Illumina NovaSeq 6000 (Sulfolobus islandicus)

organism: Saccharolobus islandicus


title: Illumina NovaSeq 6000 (Phalacrocorax auritus)

organism: Phalacrocorax auritus


title: NanoString nCounter human v3 miRNA panel

status: Public on Oct 05 2022

city: Salt Lake City

first: Jason

last: Gertz

state: UT

address: 1950 Cir of Hope Dr

institute: University of Utah

organism: Homo sapiens

manufacture_protocol: Manufacturer protocol can be found on the NanoString website: https://nanostring.com/support/support-documentation/


title: Illumina NovaSeq 6000 (Anser cygnoides)

organism: Anser cygnoides


title: Illumina HiSeq 2500 (Sicyos edulis)

status: Public on Oct 02 2022

organism: Sicyos edulis


title: Illumina HiSeq 2500 (Madurella mycetomatis)

organism: Madurella mycetomatis


title: Illumina NovaSeq 6000 (Drosophila virilis)

organism: Drosophila virilis


title: Illumina HiSeq 2000 (Mycobacteroides abscessus ATCC 19977)

organism: Mycobacteroides abscessus ATCC 19977


title: Illumina NovaSeq 6000 ([Haemophilus] ducreyi; Homo sapiens)

status: Public on Oct 01 2022

organism:
[Haemophilus] ducreyi
Homo sapiens


title: NanoString nCounter platform (NS289)

city: Beijing

first: Dong

last: Yan

state: Beijing

address: 82th South Xinhua Road, Tongzhou District

department: Oncology Department

country: China

institute: Beijing Luhe Hospital,Capital Medical University


title: Ca_Hu_MiRNome_v1

status: Public on Jun 30 2018

city: Suwon, Korea

first: Jung Woo

last: Eun

state: Korea

address: Department of Gastroenterology

country: South Korea

institute: Ajou University of Korea

manufacturer: Lab of oncogenomics, the catholic university of Korea, college of medicine

manufacture_protocol: Genosensor oligonucleotide probe (GenoExplorer™ microRNA probe set - human v14) on Codelink glass slides. Probes were designed based on the full miRNA sequences, computed with their lengths, Tm, and secondary structure. The probes are amine-modified oligonucleotides and also spotted in triplicate. The probe set contains both mature and precursor miRNA sequences as well as multiple positive and negative controls.


title: Nanostring Mouse Myeloid Innate Immunity

city: Cleveland

first: Jihye

last: Kim

state: Ohio

address: 9500 Euclid Ave.

institute: Cleveland Clinic

organism: Mus musculus

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: Zebrafish 8K cDNA array TKH

status: Public on Jan 01 2013

city: Clemson

first: Qing

last: Liu

state: SC

address: Jordan Hall

department: Biological Sciences

institute: Clemson University

organism: Danio rerio

technology: spotted DNA/cDNA

manufacturer: Medical College of Wisconsin microarray facility

manufacture_protocol:
1. The normalized zebrafish cDNA library were purchased from RZPD (RZPD library MPMGp609)
2. Plates 1-20 (7680 clones) and an additional 40 clones from various resource were used as a source of probe DNA for the microarray
3. The partial library was replicated into 384 deep-well plateds and cultures were grown in 90 ul SuperBroth supplemented with 100 mg/ml ampicilli, incubated with shaking fro 14-15 hours at 37 °C.
4. PCR of the clones were done directed from the E.coli culture using 384 slot pin replicator tool (VP Scientific),0.5 ml bacterial culture using 0.26 uM vector primer in a 20 ml reaction consisting of 1XMg-free PCR buffer (ROche), 1.5 mM MgCl2,  0.2 mM each dNTP, 1 M Betaine and 0.5 U/rnx Taq polymerase (Roche, Indianapolis, IN).The 384 reactions were incubated at 94°C for 5 min and 19 cycles of 94°C for 1 min, 60°C(decreasing 0.5°C for each cycle) for 1 min  and 72°C for 1.5 min, followed by 15 cycles of 94°C for 1 min,55°C for 1 min  and 72°C for 1.5 min, and terminated by a 7 min extemsion at 72°C.
5: PCR products were analyzed for quality by 1% agarose gel electrophoresis analysis. Products were purified using 384 PCR purification plates (Millipore, Bedford, MA) and Sciclone ALH robotics..
6. Microarrays (two per slide) were printed at a density of 8064 probes/array (4X4X21X24) on poly-L-lysine slides using a GeneMachines Omni Grid printer with sixteen Telechem International SMP3 pins.


title: Homo sapiens miRNA Ca_Hu_MiRNome_v2

status: Public on Sep 18 2015


title: Mouse 15k cDNA array

status: Public on Mar 16 2005

city: Seattle

first: Sina

last: Gharib

state: WA

address: 850 Republican St.

department: Medicine

institute: University of Washington

description:
The NIA_Mouse_15K_Array platform is composed of 15,247 cDNAs from the NIA Mouse 15K cDNA clone collection. NIA Mouse 15K is derived from several early embryonic cDNA libraries, including blastocyst, preimplantation, embryonic stem cells, trophoblast stem cells, embryonic germ cells, and others.  In addition to the original NIA cloneset, the FHCRC mouse array includes 141, mostly control clones for a total of 15,388 spots on this glass microarray.
Keywords = spotted, embryo stem preimplantation trophoblast blastocyst germ osteoblast

middle: A


title: Catholic Human 19K

status: Public on Sep 28 2010

manufacturer: the core facility of Department of Pathology, College of Medicine at The Catholic University of Korea

manufacture_protocol:
1.The 60mers of Human Oligolibrary package representing 18,664 LEADS clusters plus 197 controls (GAPDH) were purchased from Compugen/Sigma-Genosys
2. Centrifuge all plates at 1000rpm for 3min after vortexing and dissolving
3. Before printing, add 3X SSX buffer and resuspension probe acting solubilization to each well.
4. Seal plates with sealing film.
5. Incubate at 25°C for 3hrs to aid resuspension of DNA.
6. Shake plates and centrifuge plates at 1000 rpm for 3 minutes.
7. Centrifuge plates at 2000 rpm for 3 minutes.
8. Remove seals and cover with plate lids. Place in appropriate location of plate cassette.
9. After the print run is completed, allow arrayer to print chips
10. Allow oligo chip to reactive probes, after printing is completed.
11. Sealing and keeping probes on -20℃ for long time storage
12. Go post-processing step


title: Homo sapiens 0.5K microRNA Ca_Hu_MiRNome_v1

status: Public on Sep 30 2012


title: University of Copenhagen, Laboratory of Aquatic Pathobiology - Oncorhynchus mykis TechFish Immunegene PCR Array

status: Public on Sep 21 2022

city: Frederiksberg

first: Per

middle: Walter

last: Kania

address: Stigbojlen 7

organism: Oncorhynchus mykiss

description: Rael-time PCR assay

manufacturer: Non-commercial-Laboratory of Aquatic Pathobiology, Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg C., Denmark

manufacture_protocol: see Zuo et al., 2020


title: [Axiom_TWB_2] Affymetrix Axiom

status: Public on Oct 12 2022

city: Miaoli County

first: Paul

middle: Wei-Che

last: Hsu

state: Taiwan

address: Zhunan: 35, Keyan Road, Zhunan Town

department: National Health Research Institutes

country: Taiwan

institute: National Health Research Institutes

description:
##For information about the Annotation file content, please see the bundled README file.
#%create_date=2018-05-16 GMT-08:00 11:03:39
#%chip_type=Axiom_TWB_2
#%genome-species=Homo sapiens
#%genome-version=hg38
#%genome-version-ucsc=hg38
#%genome-version-ncbi=38
#%genome-version-create_date=2013-12-01
#%mitochondrion-version=NC_012920
#%dbSNP-date=2016-04-14
#%dbSNP-version=150
#%hapmap-date=2008-01-08
#%hapmap-version=23
#%omim-date=2016-07-14
#%allele_frequency_data_reference=1KGp3_2014 and Affymetrix_internal_screen
#%netaffx-annotation-date=2018-05-08
#%netaffx-annotation-netaffx-build=36
#%netaffx-annotation-netaffx-revision=r2.a2
#%netaffx-annotation-tabular-format-version=1.5
This database/product contains information from the Online Mendelian Inheritance in Man(R) (OMIM(R)) database, which has been obtained under a license from the Johns Hopkins University.  This database/product does not represent the entire, unmodified OMIM(R) database, which is available in its entirety at www.ncbi.nlm.nih.gov/omim/.

manufacture_protocol: see manufacturer's web site