title: Illumina NovaSeq 6000 (Echinococcus granulosus)

status: Public on Nov 30 2022

last: GEO

country: USA

organism: Echinococcus granulosus

technology: high-throughput sequencing

distribution: virtual


title: Nanostring human NS_IMMUNOLOGY_V2_C2328

status: Public on Jul 16 2023

city: NANTES

first: Isabelle

last: Girault

state: PAYS-DE-LA-LOIRE

address: 22 BOULEVARD BENONI GOULIN

country: France

institute: OSE IMMUNOTHERAPEUTICS

organism: Homo sapiens

technology: other

distribution: custom-commercial


title: NanoString GeoMx Human Protein for nCounter

status: Public on Nov 29 2022

city: brisbane

first: Arutha

last: Kulasinghe

address: 37 kent st

country: Australia

institute: University of Queensland

distribution: commercial

manufacture_protocol: More information is available at nanostring.com


title: Illumina HiSeq 1500 (Escherichia coli str. K-12 substr. MG1655)


title: NextSeq 1000 (Escherichia coli str. K-12 substr. MG1655)


title: Illumina NextSeq 500 (Mus musculus; Toxoplasma gondii)

status: Public on Nov 28 2022

organism:
Toxoplasma gondii
Mus musculus


title: Illumina HiSeq 4000 (Anthoceros agrestis)

organism: Anthoceros agrestis


title: Illumina NovaSeq 6000 (Epinephelus coioides)

status: Public on Nov 27 2022

organism: Epinephelus coioides


title: NextSeq 2000 (Anthoceros agrestis)


title: Illumina HiSeq 4000 (Nostoc sp. PCC 7120 = FACHB-418)

organism: Nostoc sp. PCC 7120 = FACHB-418


title: [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [CDF: hugene10st_Hs_ENTREZG, Brainarray version 24]

status: Public on Nov 25 2022

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

technology: in situ oligonucleotide

manufacture_protocol:
See manufacturer's web site
This is identical to GPL6244 but a custom CDF environment was used to extract data [Brainarray Version 24]. CDF and other files can be downloaded at web link below.
http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/24.0.0/entrezg.asp


title: NextSeq 550 (Lentivirus)

organism: Lentivirus


title: AIT-16k Human protein array

city: Leuven

first: Xavier

last: Bossuyt

address: Herestraat 49

country: Belgium

institute: UZ Leuven

technology: spotted peptide or protein


title: Qiagen Genomic services, Homo Sapiens, bespoke targeted PCR array from RNA sequencing data

status: Public on Dec 05 2022

city: Southampton

first: Hannah

last: Burke

state: Hampshire

address: Tremona Road

country: United Kingdom

institute: University Hospital Southampton

technology: RT-PCR

description: PCR assay

manufacture_protocol: miRNeasy® Serum/Plasma Advanced kit (Qiagen®) following the manufacturer’s instructions.


title: Illumina NovaSeq 6000 (Dianthus caryophyllus)

organism: Dianthus caryophyllus


title: Illumina HiSeq 2000 (Trichosurus vulpecula)

status: Public on Nov 23 2022

organism: Trichosurus vulpecula


title: NextSeq 550 (Hordeum vulgare)

organism: Hordeum vulgare


title: HiSeq X Ten (Camellia azalea)

status: Public on Nov 22 2022

organism: Camellia azalea


title: Illumina NextSeq 500 (Hammondia hammondi)

organism: Hammondia hammondi


title: NextSeq 550 (Sorghum bicolor)

organism: Sorghum bicolor


title: NextSeq 2000 (Trichosurus vulpecula)


title: HiSeq X Ten (Camellia japonica)

organism: Camellia japonica


title: MinION (Rattus norvegicus)

organism: Rattus norvegicus


title: Illumina NextSeq 500 (Enterobacter cloacae)

organism: Enterobacter cloacae


title: Sequel (Zymoseptoria tritici)

organism: Zymoseptoria tritici


title: Illumina NextSeq 500 (Salix viminalis)

status: Public on Nov 21 2022

organism: Salix viminalis


title: HiSeq X Ten (Zymoseptoria tritici)


title: Illumina NovaSeq 6000 (Pyrus betulifolia)

status: Public on Nov 19 2022

organism: Pyrus betulifolia


title: Illumina NovaSeq 6000 (Methanothermobacter thermautotrophicus)

status: Public on Nov 16 2022

organism: Methanothermobacter thermautotrophicus


title: NextSeq 2000 (Clostridioides difficile)

organism: Clostridioides difficile


title: Illumina HiSeq 4000 (Fragilariopsis cylindrus)

status: Public on Nov 17 2022

organism: Fragilariopsis cylindrus


title: Illumina NovaSeq 6000 (Anethum foeniculum)

organism: Anethum foeniculum


title: Illumina NovaSeq 6000 (Epinephelus lanceolatus)

organism: Epinephelus lanceolatus


title: Illumina HiSeq 4000 (Novosphingobium sp. HR1a)

organism: Novosphingobium sp. HR1a


title: Illumina NovaSeq 6000 (Methanothermobacter marburgensis)

organism: Methanothermobacter marburgensis


title: Illumina iSeq 100 (Trichosurus vulpecula)

organism: Trichosurus vulpecula


title: Illumina NovaSeq 6000 (Sulfolobus islandicus LAL14/1)

organism: Saccharolobus islandicus LAL14/1


title: DNBSEQ-G50 (Penicillium oxalicum)

status: Public on Nov 14 2022

organism: Penicillium oxalicum


title: Agilent-083470 SurePrint G3 Custom Human GE v3 8x60K Microarray (Feature Number version)

city: Kyoto

first: Masayoshi

last: Tsukahara

state: Kyoto

address: Shogoin kawahara-cho, sakyo-ku,

department: Research and Develpoment center

country: Japan

institute: CiRA foundation

organism: Homo sapiens

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: MinION (Catharanthus roseus)

status: Public on Nov 12 2022

organism: Catharanthus roseus


title: Illumina HiSeq 4000 (Histoplasma ohiense (nom. inval.))

status: Public on Nov 15 2022

organism: Histoplasma ohiense


title: Illumina HiSeq 1500 (Catharanthus roseus)


title: [Clariom_D_Mouse] Affymetrix Clariom D Assay, Mouse [CDF: Brainarray ClariomDMouse_Mm_ENTREZG_22.0.0]

organism: Mus musculus

description: This is identical to GPL26935 but a custom CDF environment was used to extract data [Brainarray Version 22, ClariomDMouse_Mm_ENTREZG]. CDF and other files can be downloaded at: (see web link below).

manufacture_protocol: See manufacturer's web site (www.affymetrix.com).


title: Illumina NovaSeq 6000 (Pisum sativum)

organism: Lathyrus oleraceus


title: Sequel II (Danio rerio)

status: Public on Nov 09 2022

organism: Danio rerio


title: Illumina HiSeq 4000 (Vibrio splendidus)

organism: Vibrio splendidus


title: DNBSEQ-G400 (Acidomyces sp. 'richmondensis')

organism: Acidomyces sp. 'richmondensis'


title: Illumina HiSeq 2000 (Cryptococcus neoformans var. neoformans XL280)

organism: Cryptococcus deneoformans XL280


title: Affymetrix human QuantiGene Plex 2.0 assay

city: Philadelphia

first: Marina

last: Guvakova

state: PA

address: 380S University Avenue

department: Surgery

institute: University of Pennsylvania


title: Nanostring Cancer Pathway Panel [NS_CancerPath_C2535]

city: Singapore

first: Tuan Zea

last: Tan

address: 14 Medical Drive, #11-01, Singapore

department: Cancer Science Institute Singapore

country: Singapore

institute: National University of Singapore

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: Illumina NextSeq 500 (Cylindrotheca closterium)

status: Public on Nov 07 2022

organism: Cylindrotheca closterium


title: NextSeq 2000 (Ambystoma mexicanum)

organism: Ambystoma mexicanum


title: NextSeq 550 (Sorangium sp.)

organism: Sorangium sp.


title: Illumina NextSeq 500 (Amphora coffeiformis)

organism: Amphora coffeiformis


title: Illumina HiSeq 3000 (Yarrowia lipolytica)

organism: Yarrowia lipolytica


title: BGISEQ-500 (Acorus calamus)

organism: Acorus calamus


title: MGISEQ-2000RS (Dendrobium huoshanense)

organism: Dendrobium huoshanense


title: NextSeq 2000 (Saimiri boliviensis)

status: Public on Nov 06 2022

organism: Saimiri boliviensis


title: NextSeq 2000 (Nomascus leucogenys)

organism: Nomascus leucogenys


title: DNBSEQ-G400 (Taeniopygia guttata x Taeniopygia bichenovii)

status: Public on Nov 04 2022


title: Genecopoeia miProfile Custom miRNA qPCR Arrays

status: Public on Nov 10 2022

city: SHENYANG

first: KAI

last: TAO

state: State

address: Reconstructive and Plastic Surgery, The General Hospital of Northern Theater Command, No. 83, Wenhua Road, Shenhe District

country: China

organism: Homo sapiens

description: qPCR assay

manufacture_protocol: see manufacturer's website


title: DNBSEQ-T7 (Mesocricetus auratus)

organism: Mesocricetus auratus


title: Illumina NextSeq 500 (Homo sapiens; Human immunodeficiency virus)

organism:
Homo sapiens
Human immunodeficiency virus


title: NextSeq 550 (Cryptococcus neoformans var. grubii H99)

organism: Cryptococcus neoformans H99


title: PromethION (Ridgeia piscesae)

organism: Ridgeia piscesae


title: PromethION (Paralvinella palmiformis)

organism: Paralvinella palmiformis


title: NextSeq 550 (Cephalotrichum gorgonifer)

organism: Cephalotrichum gorgonifer


title: Illumina NovaSeq 6000 (Gemmatimonas phototrophica)

status: Public on Nov 11 2022

organism: Gemmatimonas phototrophica


title: Nanostring Mouse Myeloid Innate Immunity V2

city: Cleveland

first: Jihye

last: Kim

state: Ohio

address: 9500 Euclid Ave.

department: Quantitative Health Sciences

institute: Cleveland Clinic

organism: Mus musculus


title: Illumina NextSeq 500 (Chaetoceros sp. CCMP199)

organism: Chaetoceros sp. CCMP199


title: Agilent Custom C.elegans 8x60k Gene Expression Array designed  by Genotypic Technology Private Limited.  (AMADID: 84944)

status: Public on Nov 02 2022

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

country: India

institute: Genotypic Technology

organism: Caenorhabditis elegans

manufacture_protocol: see manufacturer's web site at www.chem.agilent.com


title: NextSeq 2000 (Macaca mulatta)

organism: Macaca mulatta


title: Illumina NovaSeq 6000 ([Candida] glabrata CBS 138)

status: Public on Nov 03 2022

organism: Nakaseomyces glabratus CBS 138


title: NanoString nCounter NHP Immunology Panel [NS_NHP_Immunology_V2.0+PLS_ELM2684_C9612]

city: Boston

first: Martin

middle: P

last: Steinbuck

state: Massachusetts

address: 451D Street, Ste 501

department: Research

institute: Elicio Therapeutics


title: Illumina NextSeq 500 (Thalassiosira oceanica)

organism: Thalassiosira oceanica


title: Illumina MiSeq (Enterobacter bugandensis)

organism: Enterobacter bugandensis


title: Illumina MiSeq (Enterobacter cloacae complex sp. R_G8)

organism: Enterobacter cloacae complex sp. R_G8


title: PromethION (Homo sapiens; Mus musculus)

organism:
Homo sapiens
Mus musculus


title: Agilent-086332 SurePrint G3 Human CGH Microarray 4x180K  G4826A-086332 G4449A G5922A option 1

status: Public on Nov 08 2022

city: Palo Alto

last: Agilent Technologies

state: CA

institute: Agilent Technologies

organism: Homo sapiens

description:
SurePrint G3 Human CGH Microarray 4x180K

Arrays of this design have barcodes that begin with 16086332 or 2586332

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina MiSeq (Enterobacter asburiae)

organism: Enterobacter asburiae


title: Sequel (Enterobacter cloacae complex sp. R_G8)


title: Sequel (Enterobacter bugandensis)


title: Illumina HiSeq 2500 (Oenococcus oeni)

organism: Oenococcus oeni


title: Sequel (Enterobacter asburiae)


title: Illumina NovaSeq 6000 (Aedes albopictus)

organism: Aedes albopictus


title: NanoString Mouse Immunology Panel [NS_Immunology_MM+PLS_EMS2361_C9396(1)]

manufacture_protocol: See manufacturer's website (www.nanostring.com).


title: Sequel (Acinetobacter baumannii)

organism: Acinetobacter baumannii


title: Illumina HiSeq 4000 (Homo sapiens; Toxoplasma gondii RH)

organism:
Homo sapiens
Toxoplasma gondii RH


title: Illumina NovaSeq 6000 (Homo sapiens; Toxoplasma gondii RH)


title: Illumina HiSeq 4000 (Hakea prostrata)

status: Public on Nov 01 2022

organism: Hakea prostrata


title: PromethION (Paraescarpia echinospica)

organism: Paraescarpia echinospica


title: NextSeq 2000 (Gallus gallus)

organism: Gallus gallus


title: Illumina NovaSeq 6000 (Yersinia entomophaga)

organism: Yersinia entomophaga


title: Illumina NovaSeq 6000 (Rhodotorula toruloides)

organism: Rhodotorula toruloides


title: Illumina NovaSeq 6000 (Pongo pygmaeus)

organism: Pongo pygmaeus


title: Illumina NovaSeq 6000 (Aotus nancymaae)

organism: Aotus nancymaae


title: Illumina NovaSeq 6000 (Gorilla gorilla)

organism: Gorilla gorilla


title: BGISEQ-500 (Botrytis cinerea)

organism: Botrytis cinerea


title: Illumina HiSeq 2000 (Hakea prostrata)


title: Illumina NovaSeq 6000 (Nomascus leucogenys)

organism: Nomascus leucogenys


title: Illumina NextSeq 500 (Pongo pygmaeus)


title: Illumina NextSeq 500 (Aotus nancymaae)


title: Illumina NextSeq 500 (Saimiri boliviensis)

organism: Saimiri boliviensis


title: MPSS inner ear signature list

status: Public on Oct 01 2006

first: Robert

middle: James

last: Morell

address: 35A Convent Drive, Room 1F-103

institute: National Institute on Deafness and Other Communication Disorders (NIDCD)

organism: Mus musculus

technology: MPSS

description:
MPSS signatures detected in Lynx mouse transcriptome analysis experiment.

To generate a complete, annotated mouse signature database, we extracted all the possible signatures (“virtual signatures”) from the mouse genome sequence (NCBI build 33) and the mouse UniGene sequences (UniGene build #145). Each virtual signature is ranked based on its position and orientation in the original sequence. The annotation for that sequence is then assigned to the signature and the resulting signature database is used to annotate the data from the experiments, using our “TopHit” algorithm.

Virtual Signature Class| mRNA Orientation| Poly-Adenelation| Features| Position
------------------------------------------------------------------------------------------
0 Either - Repeat Warning Not applicable Not applicable
1 Forward Strand Poly-A Signal, Poly-A Tail 3' most
2 Forward Strand Poly-A Signal 3' most
3 Forward Strand Poly-A Tail 3' most
4 Forward Strand None 3' most
5 Forward Strand None Not 3' most
6 Forward Strand Internal Poly-A Not 3' most
11 Reverse Strand Poly-A Signal, Poly-A Tail 5' most
12 Reverse Strand Poly-A Signal 5' most
13 Reverse Strand Poly-A Tail 5' most
14 Reverse Strand None 5' most
15 Reverse Strand None Not 5' most
16 Reverse Strand Internal Poly-A Not 3' most
22 Unknown Poly-A Signal Last before signal
23 Unknown Poly-A Tail Last before tail
24 Unknown None Last in sequence
25 Unknown None Not last
26 Unknown Internal Poly-A Not 3' most
1000 Unknown - Derived from Genomic Sequence Not applicable Not applicable

middle: J

first: Inna

middle: A

last: Belyantseva

first: Thomas

middle: B

last: Friedman

first: James

middle: F

last: Battey


title: Illumina NovaSeq 6000 (Saimiri boliviensis)

last: GEO


title: Canine IO NanoString Probeset [gene name version]

organism: Canis lupus familiaris


title: Illumina NovaSeq 6000 (Pan paniscus)

organism: Pan paniscus