title: Illumina NovaSeq 6000 (Conyza sumatrensis)

status: Public on Feb 28 2023

last: GEO

country: USA

organism: Conyza sumatrensis

technology: high-throughput sequencing

distribution: virtual


title: 111012_Slyc_PT_expr

status: Public on May 15 2023

city: Milano

first: Raul

last: Pirona

address: Via Alfonso Corti 12

country: Italy

institute: IBBA-CNR

organism: Solanum lycopersicum

technology: in situ oligonucleotide

distribution: custom-commercial

manufacture_protocol: labeling and hybridization were performed according to NimbleGen Arrays User’s Guide: Gene Expression Analysis (Version 5.1)


title: Custom NanoString nCounter 52-stromal PDAC gene panel [inhouse_v2_C2096]

status: Public on May 04 2023

city: BARCELONA

first: Leire

last: Pedrosa

state: Barcelona

address: Carrer del Villarroel 170

country: Spain

institute: IDIBAPS

organism: Homo sapiens

technology: other

manufacture_protocol: See manufacturer's website (https://nanostring.com/)


title: Illumina HiSeq 4000 (Mus musculus; Mus musculus castaneus)

organism:
Mus musculus
Mus musculus castaneus


title: NextSeq 2000 (Nothobranchius furzeri)

organism: Nothobranchius furzeri


title: nCounter human PanCancer Pathways panel [NS_CANCERPATH_C2535]

status: Public on Mar 09 2023

city: Barretos

first: Rhafaela

middle: Lima

last: Causin

state: SP

address: Antenor Duarte Villela, 1331

department: Molecular Oncology Research Center

country: Brazil

institute: Barretos Cancer Hospital


title: HiSeq X Ten (Pseudomonas aeruginosa PA14)

status: Public on Feb 27 2023

organism: Pseudomonas aeruginosa PA14


title: Illumina NovaSeq 6000 (Lymantria dispar asiatica)

organism: Lymantria dispar asiatica


title: Illumina NovaSeq 6000 (Mus musculus; Mus musculus castaneus)


title: Illumina NovaSeq 6000 (Gossypium arboreum)

organism: Gossypium arboreum


title: Reverse Phase Protein Array (RPPA)

status: Public on Mar 08 2023

city: Tel Aviv

first: Metsada

last: Pasmanik-Chor

address: Ramat Aviv

department: Biology

country: Israel

institute: Tel Aviv University

technology: spotted peptide or protein

distribution: non-commercial

manufacture_protocol: none provided


title: Illumina NovaSeq 6000 (Serratia plymuthica)

status: Public on Feb 24 2023

organism: Serratia plymuthica


title: BGISEQ-500 (Acer rubrum)

status: Public on Feb 25 2023

organism: Acer rubrum


title: Illumina NovaSeq 6000 (Streptococcus agalactiae CNCTC 10/84)

organism: Streptococcus agalactiae CNCTC 10/84


title: nCounter Max (Nanostring IO360 Panel; NS_IO_360_v1.0)

status: Public on Apr 13 2023

city: Singapore

first: Narayanan

middle: Gopalakrishna

last: Iyer

address: 11 Hospital Cres

country: Singapore

institute: National Cancer Centre Singapore

description: synthetic oligonucleotide hybridization captured by imaging

distribution: commercial


title: Nanostring nCounter Human 356

status: Public on Mar 17 2023

city: Minneapolis

first: Andrew

middle: C

last: Nelson

state: Minnesota

address: 420 Delaware St SE

institute: University of Minnesota

technology: spotted oligonucleotide


title: Illumina NovaSeq 6000 (Saccharolobus solfataricus P2)

organism: Saccharolobus solfataricus P2


title: Illumina HiSeq 2000 (Saccharolobus solfataricus P2)


title: Illumina HiSeq 2500 (Mus musculus; Mus musculus castaneus)


title: Illumina HiSeq 2500 (Pseudothermotoga elfii DSM 9442 = NBRC 107921)


title: Illumina NextSeq 500 (Epulopiscium sp. 'N.t. morphotype B')

status: Public on Feb 23 2023

organism: Candidatus Epulonipiscium viviparus


title: Illumina NovaSeq 6000 (Pistia stratiotes)

organism: Pistia stratiotes


title: Illumina NextSeq 500 (Sulfolobus islandicus REY15A)

organism: Saccharolobus islandicus REY15A


title: nCounter_PTCL_Classifier

city: Omaha

first: Javeed

last: Iqbal

state: NE

address: 601 S 42nd St

institute: UNMC

manufacture_protocol: 200 ug total RNA was hybridized to nCounter CodeSets and ProbeSets overnight for 16 hours.  Samples were processed using the NanoString Prepstation using the high-sensitivity setting.  Cartridges were scanned on a NanoString Digital Analyzer using the MAX FOV setting.


title: Agilent-084490 Candidatus Atelocyanobacterium thalassa custom microarray

city: Santa Cruz

first: Jonathan

middle: David

last: Magasin

state: CA

address: 1156 High Street

department: Ocean Sciences

institute: UC Santa Cruz

description:
Agilent-084490 microarray that targets UCYN-A1,2,3 [Candidatus Atelocyanobacterium thalassa]
Platform Data table includes only features that were used during normalization. Supplementary file includes platform description with the full set of features.

first: Maria

last: Muñoz-Marin

middle: D

middle: P

last: Zehr

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/


title: Exiqon miRCURY LNA microRNA Array, 7th generation - hsa, mmu & rno [208500-02,208510,208520-22; Lot 35043, miRBase 21]

city: Xi’an

first: Zili

last: Wang

address: NO.737, Xitai Road, High-tech Zone

department: Spine Surgery

country: China

institute: Xi’an International Medical Center Hospital Affiliated to Northwest University

organism:
Homo sapiens
Mus musculus
Rattus norvegicus

description:
Product=miRCURY LNA microRNA Array, 7th generation - hsa, mmu & rno
ProductDate=March 2012
ProductNumber=208500,208501,208502,208510,208520,208521,208522
LotNumberRange=35043-35043

Organism(s)=Homo sapiens, Human Epstein-barr virus, Human Human herpesvirus 5, Human Human immunodeficiency virus 1, Human Human herpesvirus 1, Human Human herpesvirus 8, Simian Simian virus 40, Human JC polyomavirus, Human BK polyomavirus, Human Merkel cell polyomavirus, Human Herpes simplex virus 2, Human Herpes B virus, Human Herpesvirus saimiri strain A11, Human Human herpesvirus 6B
GalFileCreationDate=2017-08-08 13:45
ArrayContents_DesignedFor=miRBase 18.0
ArrayContents_CurrentNameColumn=miRBase 21.0
ArrayContents_CurrentNameColumnCoverage=Homo sapiens and related vira:75.21%

manufacture_protocol: manufacturer's website (www.exiqon.com)


title: Illumina MiSeq (Cloning vector pUC19; Escherichia phage Lambda; Escherichia phage T4)

organism:
Cloning vector pUC19
Escherichia phage T4
Escherichia phage Lambda


title: GE Healthcare/Amersham Biosciences CodeLink UniSet Human I Bioarray

city: Braunschweig

first: Prof. Hamid

last: Hossain

state: Lower Saxony

address: Celler Str. 38

department: Microbiology

country: Germany

institute: Klinikum Braunschweig


title: Illumina MiSeq (Escherichia phage Lambda)

organism: Escherichia phage Lambda


title: Illumina NovaSeq 6000 (Homarus americanus)

status: Public on Feb 22 2023

organism: Homarus americanus


title: Illumina NovaSeq 6000 (Streptococcus sanguinis)

organism: Streptococcus sanguinis


title: Illumina NovaSeq 6000 (Drosophila takahashii)

organism: Drosophila takahashii


title: Illumina NovaSeq 6000 (Drosophila subobscura)

organism: Drosophila subobscura


title: Illumina NovaSeq 6000 (Drosophila biarmipes)

organism: Drosophila biarmipes


title: Illumina HiSeq 4000 (feces metagenome)

organism: feces metagenome


title: Illumina NovaSeq 6000 (Drosophila suzukii)

organism: Drosophila suzukii


title: Illumina HiSeq 2500 (Pseudothermotoga lettingae TMO)

organism: Pseudothermotoga lettingae TMO


title: Illumina NovaSeq 6000 (Drosophila mojavensis)

organism: Drosophila mojavensis


title: Illumina NovaSeq 6000 (Candida albicans SC5314)

status: Public on Feb 26 2023

organism: Candida albicans SC5314


title: Illumina NovaSeq 6000 (Drosophila pseudoobscura)

organism: Drosophila pseudoobscura


title: Illumina NovaSeq 6000 (Drosophila ficusphila)

organism: Drosophila ficusphila


title: Illumina NovaSeq 6000 (Drosophila yakuba)

organism: Drosophila yakuba


title: Illumina NovaSeq 6000 (Drosophila simulans)

organism: Drosophila simulans


title: Illumina NovaSeq 6000 (Drosophila azteca)

organism: Drosophila azteca


title: Illumina NovaSeq 6000 (Drosophila ananassae)

organism: Drosophila ananassae


title: Illumina NovaSeq 6000 (Nothobranchius orthonotus)

status: Public on Feb 21 2023

organism: Nothobranchius orthonotus


title: DNBSEQ-T7 (Komagataella phaffii GS115)

organism: Komagataella phaffii GS115


title: Illumina NextSeq 500 (Pyrus pyrifolia)

organism: Pyrus pyrifolia


title: Illumina NovaSeq 6000 (Eleocharis vivipara)

status: Public on Feb 20 2023

organism: Eleocharis vivipara


title: NextSeq 1000 (Hepatitis B virus)

organism: Hepatitis B virus


title: BGISEQ-500 (Capra hircus)

organism: Capra hircus


title: Illumina NextSeq 500 (Pyrus syriaca)

organism: Pyrus syriaca


title: Illumina NovaSeq 6000 (Saccharomyces cerevisiae SK1)

organism: Saccharomyces cerevisiae SK1


title: BGISEQ-500 (Faecalibacterium prausnitzii)

organism: Faecalibacterium prausnitzii


title: Illumina NextSeq 500 (Triticum aestivum; Zymoseptoria tritici IPO323)

organism:
Triticum aestivum
Zymoseptoria tritici IPO323


title: Illumina NovaSeq 6000 (Sulfolobus islandicus REY15A)

status: Public on Feb 19 2023

organism: Saccharolobus islandicus REY15A


title: Illumina NovaSeq 6000 (Populus nigra)

organism: Populus nigra


title: Real-time quantitative PCR analysis of Pseudomonase aeruginosa (PA) biofilm-forming gene

status: Public on Feb 18 2023

city: Zarqa

first: Hafez

last: Al-momani

address: Arab street

department: Microbiology, Pathology and forensic medicine

country: Jordan

institute: Hashemite university

organism: Pseudomonas aeruginosa

technology: RT-PCR

description:
DC-APC PCR assay panel
SABiosciences RT² Profiler panel of PCR assays.

manufacture_protocol: see manufacturer's website


title: Illumina NovaSeq 6000 (Pelodiscus sinensis)

organism: Pelodiscus sinensis


title: DNBSEQ-G400 (Eleocharis vivipara)

status: Public on Feb 17 2023


title: Illumina NovaSeq 6000 (Drosophila persimilis)

organism: Drosophila persimilis


title: [Axiom_MouseHD] Affymetrix Axiom Mouse

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Mus musculus

description: All annotations for this array are included in the file Axiom_MouseHD_Annotation.r2.csv which is available from the foot of this record.

manufacture_protocol: see manufacturer's web site


title: Illumina HiSeq 2000 (Frankia casuarinae)

status: Public on Feb 15 2023

organism: Frankia casuarinae


title: Illumina HiSeq 4000 (Jaculus jaculus)

status: Public on Feb 16 2023

organism: Jaculus jaculus


title: Illumina NovaSeq 6000 (Carassius carassius)

organism: Carassius carassius


title: NextSeq 550 (Manihot esculenta)

organism: Manihot esculenta


title: Illumina NextSeq 500 (Ustilago maydis)

organism: Mycosarcoma maydis


title: Illumina NovaSeq 6000 (Drosophila erecta)

organism: Drosophila erecta


title: Illumina NovaSeq 6000 (Sylvia borin)

organism: Sylvia borin


title: MinION (Manihot esculenta)


title: DNBSEQ-G400 (Lotus japonicus)

status: Public on Feb 13 2023

organism: Lotus japonicus


title: Illumina NovaSeq 6000 (Streblospio benedicti)

organism: Streblospio benedicti


title: Illumina NovaSeq 6000 (Saccharopolyspora erythraea)

organism: Saccharopolyspora erythraea


title: Illumina NovaSeq 6000 (Homo sapiens; Influenza A virus; Streptococcus pneumoniae)

status: Public on Feb 11 2023

organism:
Streptococcus pneumoniae
Homo sapiens
Influenza A virus


title: Illumina NovaSeq 6000 (Homo sapiens; Streptococcus pneumoniae)

organism:
Streptococcus pneumoniae
Homo sapiens


title: Illumina NovaSeq 6000 (Homo sapiens; Influenza A virus)

organism:
Homo sapiens
Influenza A virus


title: [Clariom_D_Human] Affymetrix Human Clariom D Assay [transcript (gene) version] [CDF: ClariomDHuman_Hs_ENSG_25.0.0]

status: Public on Feb 10 2023

organism: Homo sapiens

manufacture_protocol: This is similar to GPL23126 but a custom CDF environment was used to extract data [BrainArray version 25, ClariomDHuman].CDF and other files can be downloaded from Brainarray (see web link below). These files are also available at the foot of this record.


title: VSCBIC hPDLSCs CF96TM real-time PCR detection system

city: Pathumwan

first: Medania

last: Purwaningrum

state: Bangkok

address: Henri Dunant

department: Pharmacology

country: Thailand

institute: Faculty of Veterinary Science

description: PCR assay

manufacture_protocol: In house method


title: [Axiom_UKB_WCSG] Affymetrix (Applied Biosystems) UK Biobank Axiom Array

status: Public on Feb 09 2023

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.


title: Illumina HiSeq 2500 (Elopichthys bambusa)

last: GEO

organism: Elopichthys bambusa


title: Illumina MiSeq (Mycobacterium marinum)

organism: Mycobacterium marinum


title: Illumina NovaSeq 6000 (Mus musculus castaneus)

organism: Mus musculus castaneus


title: PanaMa Customized Nanostring PanCancer Progression Panel

city: Berlin

first: Arndt

last: Stahler

address: Chariteplatz 1

department: Medical Department of Hematology, Oncology and Cancer Immunology

institute: Charite Universitaetsmedizin Berlin

manufacture_protocol: See manufacturer's web site: http://www.nanostring.com


title: Illumina MiniSeq (Homo sapiens; Severe acute respiratory syndrome coronavirus 2)

organism:
Homo sapiens
Severe acute respiratory syndrome coronavirus 2


title: Illumina NextSeq 500 (Phaeodactylum tricornutum CCAP 1055/1)

status: Public on Feb 08 2023

organism: Phaeodactylum tricornutum CCAP 1055/1


title: Illumina NextSeq 500 (Orbicella faveolata)

organism: Orbicella faveolata


title: DNBSEQ-G400 (Lactuca sativa var. capitata)

status: Public on Feb 07 2023

organism: Lactuca sativa var. capitata


title: Illumina NextSeq 500 (Avena sativa)

organism: Avena sativa


title: Illumina NextSeq 500 (Bacillus subtilis; Cryptococcus neoformans; Enterococcus faecalis; Escherichia coli; Limosilactobacillus fermentum; Listeria monocytogenes; Saccharomyces cerevisiae; Salmonella enterica; Staphylococcus aureus)

organism:
Escherichia coli
Staphylococcus aureus
Enterococcus faecalis
Bacillus subtilis
Limosilactobacillus fermentum
Listeria monocytogenes
Saccharomyces cerevisiae
Cryptococcus neoformans
Salmonella enterica


title: Illumina NovaSeq 6000 (Setaria viridis)

status: Public on Feb 12 2023

organism: Setaria viridis


title: Illumina HiSeq 2500 (Expression vector lentiGuide-Puro)

status: Public on Feb 06 2023

organism: Expression vector lentiGuide-Puro


title: Illumina NextSeq 500 (Limosilactobacillus reuteri)

organism: Limosilactobacillus reuteri


title: Illumina NovaSeq 6000 (Gossypium bickii)

organism: Gossypium bickii


title: Illumina NextSeq 500 (Lactiplantibacillus plantarum; Limosilactobacillus reuteri)

organism:
Lactiplantibacillus plantarum
Limosilactobacillus reuteri


title: NanoString Custom Code Set

city: Pullman

first: Michael

middle: Paul

last: Phelps

state: WA

address: 100 Dairy Rd

department: Animal Sciences

institute: Washington State University

organism: Oncorhynchus mykiss

manufacture_protocol: Nanostring


title: RT-PCR of fetal brain and placenta jz

city: Cambridge

first: Jorge

last: Lopez-Tello

state: Please Select

address: Centre for trophoblast research, Dept Physiology, Development and  Neuroscience, DOWNING ST

country: United Kingdom

institute: University of Cambridge

organism: Mus musculus

description: PCR assay


title: Illumina NovaSeq 6000 (Natrinema sp. J7-1)

organism: Natrinema sp. J7-1


title: Illumina HiSeq 4000 (Gossypium bickii)

status: Public on Feb 05 2023


title: Illumina NovaSeq 6000 (Thalassiosira pseudonana)

status: Public on Feb 04 2023

organism: Thalassiosira pseudonana


title: Illumina NovaSeq 6000 (Folsomia candida)

status: Public on Feb 01 2023

organism: Folsomia candida


title: MGISEQ-2000RS (Toxoplasma gondii)

organism: Toxoplasma gondii


title: GridION (Homo sapiens; Mus musculus)

organism:
Homo sapiens
Mus musculus


title: Illumina HiSeq 3000 (Ustilago maydis)

status: Public on Feb 03 2023

organism: Mycosarcoma maydis


title: Reverse Phase Protein Array (RPPA) - MD Anderson Cancer Center

status: Public on May 25 2019

city: New York

first: Ramon

last: Parsons

state: New York

address: 1425 Madison Ave, L1-15C

department: Oncological Sciences

institute: Icahn school of medicine at Mount Sinai

organism: Homo sapiens


title: NextSeq 1000 (Drosophila melanogaster)

organism: Drosophila melanogaster


title: NextSeq 2000 (Escherichia coli str. K-12 substr. MG1655)


title: Infinium Asian Screening Array-24 v1.0 BeadChip

technology: oligonucleotide beads

description:
ASA-24v1-0_A1.csv_Physical-and-Genetic-Coordinates.txt
hg19