title: Agilent-086414 Golden Hamster Expression

status: Public on Apr 30 2023

city: Lyon

first: jean-michel

last: flaman

address: 28 rue Laennec

department: CRCL

country: France

institute: Inserm 1052

organism: Mesocricetus auratus

technology: in situ oligonucleotide

description:
Design with gene symbol from Mesocricetus Auratus genome annotation from ensembl

Arrays of this design have barcodes that begin with 16086414 or 2586414.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

distribution: custom-commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: DNBSEQ-T7 (Oryza sativa)

last: GEO

country: USA

organism: Oryza sativa

technology: high-throughput sequencing

distribution: virtual


title: Agilent-086414 Golden Hamster Expression [PROBE NAME]


title: nCounter Human Glial Profiling Panel

status: Public on May 04 2023

city: Rome

first: Marika

last: Guercio

state: RM

address: Viale di San Paolo, 15

department: Oncohematology

country: Italy

institute: Ospedale Pediatrico Bambino Gesù

organism: Homo sapiens

technology: other

manufacture_protocol: see manufacturer's website


title: Agilent-087164 8x60K i-Motif array [221026 NIH Sri G4126A; condensed version]

city: Frederick

first: Srinath

last: Seshadri

state: MD

address: 1050 Boyle St.

institute: NCI/CCR

description:
Arrays of this design have barcodes that begin with 16087164 or 2587164

The original array has 8 sectors/blocks:
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the condensed ID of replicate probe sequences on the array
All the Probe IDs corresponding to a particular array sequence are included in the platform table


title: Illumina NovaSeq 6000 (Chlamydia trachomatis 434/Bu)

status: Public on Apr 26 2023

organism: Chlamydia trachomatis L2/434/Bu


title: Arraystar NuRNA™ Human Central Metabolism PCR Array

city: Rochester

first: Adebowale

last: Bamidele

state: Minnesota

address: Medicine, 200 First Street SW, Guggenheim 10

department: Medicine

institute: Mayo Clinic

technology: RT-PCR

description: PCR assay


title: Nanostring nCounter Custom Panel_IGS_2022 [n6_vDV1]

city: besancon

first: irène

last: gallais sérézal

address: boulevard stalingrad

institute: CHU Besançon


title: QIAGEN RT² Profiler™PCR Array  Human Apoptosis

status: Public on Apr 25 2023

city: Gothenburg

first: Nishte

last: Rassol

address: Gula stråket 2b

country: Sweden

institute: University of Gothenburg

description: PCR assay

distribution: commercial


title: Illumina NovaSeq 6000 (Pristina leidyi)

organism: Pristina leidyi


title: NanoString nCounter Immunology panel [NS_Immunology_Mm_C2269]

status: Public on Apr 29 2023

city: Silver Spring

first: Sreenivas

last: Gannavaram

address: 10903 New Hampshire Ave

department: DETTD

institute: US FDA

organism: Mus musculus

manufacture_protocol: See manufacturer's website (http:www.nanostring.com)


title: Illumina HiSeq 4000 (Streptococcus sanguinis)

organism: Streptococcus sanguinis


title: DNBSEQ-G400 (Canis lupus familiaris)

status: Public on Apr 21 2023

organism: Canis lupus familiaris


title: Illumina NovaSeq 6000 (Homo sapiens; Human betaherpesvirus 6B; Human gammaherpesvirus 4)

organism:
Homo sapiens
human gammaherpesvirus 4
Human betaherpesvirus 6B


title: Illumina NovaSeq 6000 (Curtobacterium)

organism: Curtobacterium


title: Illumina HiSeq 2000 (Eptatretus atami)

status: Public on Apr 20 2023

organism: Eptatretus atami


title: Illumina HiSeq 1000 (Drosophila simulans)

organism: Drosophila simulans


title: Illumina NovaSeq 6000 (Cereibacter sphaeroides)

status: Public on Apr 19 2023

organism: Cereibacter sphaeroides


title: Illumina HiSeq 2500 (Thermococcus barophilus)

status: Public on Apr 18 2023

organism: Thermococcus barophilus


title: Fullmoon Cytokine Profiling Antibody Array

status: Public on Apr 17 2023

city: Daegu

first: Soo hyun

last: Kang

address: 2177 Dalgubeol-daero

country: South Korea

institute: kyungpook university

technology: antibody


title: Neisseria meningitidis Protein Microarray (Recombinant)

status: Public on Apr 14 2023

city: Siena

first: Erika

last: Bartolini

state: Italy

address: Via Fiorentina 1

department: AIMB

institute: GSK Vaccines

organism: Neisseria meningitidis

technology: spotted peptide or protein

description: spotted microarray containing purified recombinant proteins

distribution: non-commercial

manufacturer: Molecular Biology and Bacteriology lab, GSK, Siena

manufacture_protocol: Purified recombinant protein were diluted at final concentration of 0.5 mg/ml in 40% glycerol and transferred into 384-well plates. Two droplets of 0.1 nL protein solution was deposited per spot on nitrocellulose-coated slides (FAST slides, Maine Manufacturing) using the non-contact printer Marathon Argus Spotter (Arrayjet). Printing was performed in a cabinet with controlled humidity and temperature (50-55% and 18°C, respectively). Each protein was printed in replicates on each slide. Printed protein microarrays were kept at room temperature for 5 hours, dried under a stream of nitrogen and store at 4°C.


title: NextSeq 2000 (Saccharomyces cerevisiae W303)

organism: Saccharomyces cerevisiae W303


title: NextSeq 2000 (Mycobacterium canettii)

status: Public on Apr 13 2023

organism: Mycobacterium canetti


title: BGISEQ-500 (Pseudomonas putida)

organism: Pseudomonas putida


title: NextSeq 2000 (Mycobacterium tuberculosis)

organism: Mycobacterium tuberculosis


title: Illumina NovaSeq 6000 (Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759)


title: Illumina NovaSeq 6000 (Phalaenopsis amabilis)

organism: Phalaenopsis amabilis


title: DNBSEQ-G400 (Toxoplasma gondii)

status: Public on Apr 12 2023

organism: Toxoplasma gondii


title: Illumina NextSeq 500 (Methanosarcina acetivorans C2A)

organism: Methanosarcina acetivorans C2A


title: Illumina NovaSeq 6000 (Peromyscus californicus)

organism: Peromyscus californicus


title: Illumina NovaSeq 6000 (Fusarium graminearum PH-1)

organism: Fusarium graminearum PH-1


title: DNBSEQ-G400 (Bubalus bubalis)

organism: Bubalus bubalis


title: Illumina HiSeq 4000 (Homo sapiens; Toxoplasma gondii)

organism:
Toxoplasma gondii
Homo sapiens


title: Illumina NovaSeq 6000 (Xanthomonas albilineans)

organism: Xanthomonas albilineans


title: Illumina NovaSeq 6000 (Lactobacillus kefiranofaciens; Lentilactobacillus kefiri)

organism:
Lentilactobacillus kefiri
Lactobacillus kefiranofaciens


title: Illumina HiSeq 2500 (Homo sapiens; synthetic construct)

organism:
Homo sapiens
synthetic construct


title: Illumina HiSeq 2500 (Trichoderma asperellum)

organism: Trichoderma asperellum


title: NanoString Human Autoimmune Profiling Panel and spike in Coronavirus Panel Plus probe sets

city: Cleveland

first: Christine

last: McDonald

state: Ohio

address: 9500 Euclid Avenue

department: Inflammation & Immunity

institute: Cleveland Clinic

organism: Homo sapiens


title: DNBSEQ-T7 (Daucus carota)

organism: Daucus carota


title: Coxiella burnetii Antigen Microarray 12

status: Public on Apr 11 2023

city: Irvine

first: Sharon

last: Jan

state: CA

address: 812 Medical Plaza Dr Rm 387 Med Surge II

department: Physiology & Biophysics

institute: UC Irvine

organism: Coxiella burnetii


title: NanoString Human nCounter PanCancer IO 360 Panel

city: Bangkok

first: Umaporn

last: Limothai

state: Thailand

address: 1873 Rama IV Rd, Pathum Wan, Pathum Wan District, Faculty of Medicine, Chulalongkorn University

country: Thailand

institute: Chulalongkorn University, Faculty of Medicine

manufacture_protocol: See manufacturer's website (www.nanostring.com).


title: Neisseria meningitidis Protein Microarray (OMV)

organism: Neisseria meningitidis

description: spotted microarray containing OMV (E.coli outer membrane vesicles)

manufacture_protocol: Purified recombinant proteins were diluted at final concentration of 0.5 mg/ml in 40% glycerol. Recombinant E. coli GMMA and OMV from NZ98/254  were prepared at 1 mg/ml in 20% glycerol and then serially diluted in 20% glycerol (step-2 dilutions).  Samples were transferred into 384-well plates. Two droplets of 0.1 nL protein solution was deposited per spot on nitrocellulose-coated slides (FAST slides, Maine Manufacturing) using the non-contact printer Marathon Argus Spotter (Arrayjet). Printing was performed in a cabinet with controlled humidity and temperature (50-55% and 18°C, respectively). Each protein was printed in replicates on each slide. Printed protein microarrays were kept at room temperature for 5 hours, dried under a stream of nitrogen and store at 4°C. Only the highest concentration of the vesicles was included in the final dataset.


title: Illumina NovaSeq 6000 (Oryza sativa; Pyricularia oryzae)

status: Public on Apr 10 2023

organism:
Oryza sativa
Pyricularia oryzae


title: Illumina NovaSeq 6000 (Odontobutis potamophila)

organism: Odontobutis potamophilus


title: Illumina HiSeq 2000 (Trichoderma harzianum)

status: Public on Apr 07 2023

organism: Trichoderma harzianum


title: Illumina NovaSeq 6000 (Solenopsis invicta)

organism: Solenopsis invicta


title: Illumina HiSeq 3000 (Prunus avium)

organism: Prunus avium


title: Illumina NovaSeq 6000 (Apocynum venetum)

status: Public on Apr 08 2023

organism: Apocynum venetum


title: DNBSEQ-G400 (Ciona intestinalis)

organism: Ciona intestinalis


title: Ion GeneStudio S5 plus (Mus musculus)

organism: Mus musculus


title: NextSeq 2000 (Brucella ovis)

status: Public on Apr 06 2023

organism: Brucella ovis


title: Illumina NovaSeq 6000 (Crocosphaera watsonii WH 8501)

status: Public on Apr 05 2023

organism: Crocosphaera watsonii WH 8501


title: Illumina MiniSeq (Homo sapiens; Pseudomonas aeruginosa)

status: Public on Apr 04 2023

organism:
Pseudomonas aeruginosa
Homo sapiens


title: Nanostring nCounter Metabolic Pathways Panel (NS_HS_METABOLISM_V1.0)

city: Swansea

first: Benjamin

middle: James

last: Jenkins

address: Singleton Park

country: United Kingdom

institute: Swansea University

manufacture_protocol: Sample RNA is hybridised with target-specific capture and reporter probes in order to create a library of unique target-probe complexes. Each target is labelled with a specific molecular barcode, which can then be detected and counted using an automated fluorescence microscope. Detection and scanning were performed by the nCounter® SPRINT Profiler analysis system


title: Illumina NovaSeq 6000 (Phyllostachys edulis)

organism: Phyllostachys edulis


title: Illumina HiSeq 2500 (Streptomyces xinghaiensis)

organism: Streptomyces xinghaiensis


title: Illumina NovaSeq 6000 (Tupaia chinensis)

status: Public on Apr 02 2023

organism: Tupaia chinensis


title: Illumina NextSeq 500 (Haloferax volcanii DS2)

status: Public on Apr 03 2023

organism: Haloferax volcanii DS2


title: Raybio Quantibody Rat Inflammation Array 1 (QAR-INF-1)

city: Xinxiang

first: Han

last: Li

address: 601 Jinsui Road, Hongqi District, Xinxiang City, Henan Province

country: China

institute: Xinxiang Medical University

organism: Rattus norvegicus


title: Nanostring nCounter Autoimmune Profiling Panel (NS_HS_AI_PRO_V1.1)

organism: Homo sapiens


title: Illumina NovaSeq 6000 (Entamoeba histolytica)

organism: Entamoeba histolytica


title: Illumina HiSeq 2500 (Vaccinia virus)

organism: Orthopoxvirus vaccinia


title: Illumina HiSeq 3000 (Xenopus tropicalis)

status: Public on Apr 01 2023

organism: Xenopus tropicalis


title: Illumina NovaSeq 6000 (Zeugodacus cucurbitae)

organism: Zeugodacus cucurbitae


title: Illumina NovaSeq 6000 (Ceratitis capitata)

organism: Ceratitis capitata


title: Agilent-049286 Ath_8x60K_exp_validated [PROBE NAME]

status: Public on Oct 06 2017

city: Erlangen

first: Weber

last: Simone

state: Bavaria

address: Ulmenweg 18

country: Germany

organism: Arabidopsis thaliana

description: The provided SEQUENCE is only a subset of at least 30 nucleotides of the sequence in the design (this is a kind of copy protection).


title: Agilent-026062 Msmeg_v1 (Feature Number version)

status: Public on Jul 01 2011

organism: Mycolicibacterium smegmatis MC2 155

description:
version 1, Msmeg genome NCBI

Arrays of this design have barcodes that begin with 16026062 or 2526062.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-069270 Sus scrofa array (Probe name version)

city: Orient Point

first: James

middle: Jiangtao

last: Zhu

state: NY

department: Plum Island Animal Disease Center

institute: USDA-ARS

organism: Sus scrofa

technology: spotted oligonucleotide

manufacture_protocol: manufacturer's web site


title: LGTC Rat Compugen 4.5K long oligo array v1.0

status: Public on Aug 31 2006

city: Rotterdam

first: Jasper

last: Saris

state: Zuid holland

address: Dr. Molewaterplein 50

country: Netherlands

institute: Erasmus Medical Center

description: This set includes 4800 oligonucleotides, mostly 65-mers, designed based upon representative sequences in build xxx of the rat UniGene database.

manufacturer: LGTC - LUMC Genome Technology Center, The Netherlands

first: J

last: Den Dunnen

first: P

middle: A

last: 't Hoen

manufacture_protocol: as described in LGTC manual


title: Agilent-026062 Msmeg_v1 (Probe Name version)


title: Illumina NovaSeq 6000 (Bactrocera dorsalis)

last: GEO

organism: Bactrocera dorsalis


title: Barley_array_v35-01

status: Public on Apr 29 2009

organism: Hordeum vulgare

description:
Product: Number G2519F
Design ID: 017060
Slide Format: 4 x 44K
Features / Microarray: 440000  Genes / Microarray: ~40,000 (41.196)
Content Source: Harvest database
Manufacturing Process: In situ oligo synthesis
Slide Dimensions: 1 x 3" (25 x 75 mm)
Probe Type: In situ
Probe Length: 60 bases
Probe Orientation: Sense
Feature Size: 4 x 44K = ~65 microns
Based on sequence information of 444.652 ESTs (february 2007; http://harvest-web.org/) a 44K 60mer Agilent oligoarray was designed. To this end all 28.001 consensus sequences and ca. 13.000 selected singletons were chosen to derive a specific set of oligos using the web-based earray-tool from Agilent (http://earray.chem.agilent.com/earray/). The respective Singletons were considered if they had a significant blast hit in rice and/or A. thaliana (E-Value >-10). After verifying the quality of the oligos barley -oligoarray (gerste_array_v35-01) was created comprising 41196 60mers. 2607 genes were randomly selected and spotted twice.

first: Patrick

last: Schäfer

first: Jörn

last: Pons-Kühnemann

first: Karl-Heinz

last: Kogel

first: Uwe

last: Sonnewald

last: Scholz

first: Sophia

manufacture_protocol:
See the manufacturer's website
http://www.agilent.com/