title: NextSeq 550 (Streptococcus oralis)

status: Public on Jul 27 2023

last: GEO

country: USA

organism: Streptococcus oralis

technology: high-throughput sequencing

distribution: virtual


title: Illumina HiSeq 2000 (Ralstonia solanacearum)

status: Public on Jul 31 2023

organism: Ralstonia solanacearum


title: NextSeq 550 (Streptococcus mutans; Streptococcus oralis)

organism:
Streptococcus oralis
Streptococcus mutans


title: Resolve Biosciences Molecular Cartography custom platform (98 genes)

status: Public on Sep 07 2023

city: Milano

first: Renato

last: Ostuni

address: Via Olgettina 58

country: Italy

institute: San Raffaele Telethon Institute for Gene Therapy

organism: Homo sapiens

technology: other

distribution: custom-commercial

manufacture_protocol:
Probe panel for 98 genes designed using Resolve Biosciences proprietary design software, as previously reported (reference paper PMID: 35021063).
Molecular Cartography (100-plex combinatorial single molecule fluorescence in-situ hybridization)


title: Illumina HiSeq 2500 (Phodopus sungorus)

status: Public on Jul 28 2023

organism: Phodopus sungorus


title: Illumina NovaSeq 6000 (Hydrangea macrophylla)

status: Public on Jul 25 2023

organism: Hydrangea macrophylla


title: Ion GeneStudio S5 (Homo sapiens)


title: NextSeq 2000 (Plasmodium falciparum 3D7)

organism: Plasmodium falciparum 3D7


title: Illumina NextSeq 500 (Anopheles culicifacies)

status: Public on Jul 24 2023

organism: Anopheles culicifacies


title: NanoString Human PanCancer Immune Profiling Panel (Custom Codeset)

status: Public on Jul 30 2023

city: MADRID

first: Juan F

last: Garcia

state: MADRID

address: C/ ARTURO SORIA 270

country: Spain

institute: MD ANDERSON CANCER CENTER MADRID

description: PanCancer Immune Profiling Panel with 30 extra custom genes

manufacturer: NanoString Technologies, Inc.; Seattle, WA

manufacture_protocol: See manufacturer's website


title: Illumina MiSeq (Lemna japonica)

organism: Lemna japonica


title: Illumina NovaSeq 6000 (Lemna turionifera)

organism: Lemna turionifera


title: Illumina NovaSeq 6000 (Lemna japonica)


title: Illumina NovaSeq 6000 (Lemna minor)

organism: Lemna minor


title: Illumina MiSeq (Lemna gibba)

organism: Lemna gibba


title: MinION (Wolffia australiana)

organism: Wolffia australiana


title: MGISEQ-2000RS (Homo)

organism: Homo


title: PromethION (Lemna turionifera)


title: Illumina HiSeq 2500 (Wolffia australiana)


title: NextSeq 2000 (Lemna turionifera)


title: Illumina NextSeq 500 (Wolffia australiana)


title: PromethION (Lemna japonica)


title: PromethION (Lemna minor)


title: MGISEQ-2000RS (Neurospora crassa)

organism: Neurospora crassa


title: Illumina NextSeq 500 (Lemna japonica)


title: HiSeq X Ten (Sporisorium scitamineum)

organism: Sporisorium scitamineum


title: Illumina NextSeq 500 (Lemna gibba)


title: DNBSEQ-G400 (Sorghum bicolor)

organism: Sorghum bicolor


title: MinION (Lemna gibba)


title: MinION (Lemna japonica)


title: Illumina HiSeq 2500 (Zymoseptoria pseudotritici)

status: Public on Jul 20 2023

organism: Zymoseptoria pseudotritici


title: Illumina HiSeq 2500 (Zymoseptoria ardabiliae)

organism: Zymoseptoria ardabiliae


title: Illumina NovaSeq 6000 (Ericerus pela)

status: Public on Jul 21 2023

organism: Ericerus pela


title: Illumina NovaSeq 6000 (Camelus bactrianus)

organism: Camelus bactrianus


title: Illumina NovaSeq 6000 (Schizosaccharomyces japonicus)

organism: Schizosaccharomyces japonicus


title: Vizgen's MERSCOPE

city: Munich

first: Karin

middle: A.

last: Ziegler

address: Biedersteiner Str. 29

country: Germany

institute: Technical University of Munich

organism: Mus musculus

manufacture_protocol: MERFISH data were generated on the MERSCOPE Platform, services provided by Vizgen, Inc.


title: Illumina NovaSeq 6000 (Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S)

status: Public on Jul 26 2023


title: Illumina NextSeq 500 (Lemna minor)


title: Illumina MiSeq (Lachancea kluyveri)

status: Public on Jul 18 2023

organism: Lachancea kluyveri


title: Illumina HiSeq 2500 (Lachancea kluyveri)


title: Illumina HiSeq 2500 (Tenodera angustipennis)

organism: Tenodera angustipennis


title: Illumina HiSeq 2500 (Chordodes fukuii)

organism: Chordodes fukuii


title: Qiagen Human Inflammatory Response & Autoimmunity, RT-PCR Array

status: Public on Jul 19 2023

city: Milan

first: Irma

last: Saulle

address: G.B. Grassi 74

institute: University of Milan

organism: Homo sapiens

technology: RT-PCR

description:
PCR assay
Human serum and plasma

manufacture_protocol: see manufacturer's website


title: Illumina NovaSeq 6000 (Perca fluviatilis)

organism: Perca fluviatilis


title: Illumina NovaSeq 6000 (Leptinotarsa decemlineata)

organism: Leptinotarsa decemlineata


title: NextSeq 550 (Fusarium fujikuroi)

organism: Fusarium fujikuroi


title: Illumina NovaSeq 6000 (Ostreococcus tauri)

status: Public on Jul 17 2023

organism: Ostreococcus tauri


title: Illumina HiSeq 4000 (Aethionema arabicum)

status: Public on Jul 13 2023

organism: Aethionema arabicum


title: Illumina NovaSeq 6000 (Didelphis marsupialis)

status: Public on Jul 12 2023

organism: Didelphis marsupialis


title: Illumina NovaSeq 6000 (Peromyscus maniculatus)

organism: Peromyscus maniculatus


title: NextSeq 2000 (Heterocephalus glaber)

organism: Heterocephalus glaber


title: Illumina NovaSeq 6000 (Rhabdomys pumilio)

organism: Rhabdomys pumilio


title: Illumina NovaSeq 6000 (Fukomys damarensis)

organism: Fukomys damarensis


title: Illumina NovaSeq 6000 (Aliivibrio fischeri)

organism: Aliivibrio fischeri


title: Illumina NextSeq 500 (Roseburia intestinalis)

organism: Roseburia intestinalis


title: Illumina NextSeq 500 (Subdoligranulum variabile)

organism: Subdoligranulum variabile


title: Illumina NovaSeq 6000 (Anolis sagrei)

organism: Anolis sagrei


title: NextSeq 550 (Cryptococcus neoformans)

organism: Cryptococcus neoformans


title: Illumina NextSeq 500 (Bacteroides xylanisolvens)

organism: Bacteroides xylanisolvens


title: Illumina NovaSeq 6000 (Chionographis japonica; Secale cereale)

status: Public on Jul 11 2023

organism:
Secale cereale
Chionographis japonica


title: MGISEQ-2000RS (Capra hircus)

organism: Capra hircus


title: NextSeq 2000 (Fukomys damarensis)


title: GMAP-UTS520601 array

city: Saskatoon

first: Franco

middle: J

last: Vizeacoumar

state: Saskatchewan

address: 4D40 Health Sciences Building, 107 Wiggins Road

department: Oncology

country: Canada

institute: University of Saskatchewan

organism: Homo sapiens

technology: in situ oligonucleotide


title: nCounter NanoString NanoClassifier Gene Set

city: Amsterdam

first: Arezo

last: Torang

address: Meibergdreef 9

country: Netherlands

institute: Amsterdam UMC

distribution: non-commercial

manufacture_protocol: See manufacturer's website (www.nanostring.com)


title: Illumina HiSeq 2000 (Mus musculus; Streptococcus pyogenes NZ131)

status: Public on Jul 10 2023

organism:
Mus musculus
Streptococcus pyogenes NZ131


title: Illumina HiSeq 2000 (Streptococcus pyogenes NZ131)

organism: Streptococcus pyogenes NZ131


title: Nanostring nCounter human Custom Panel for 469 mRNA targets

status: Public on Jul 07 2023

city: Memphis

first: Jeremy

middle: Chase

last: Crawford

state: TN

address: MS 221, 262 Danny Thomas Place

department: Department of Host-Microbe Interactions

institute: St. Jude Children's Research Hospital

manufacture_protocol: See manufacturer's website.


title: DNBSEQ-T7 (Pinctada fucata)

organism: Pinctada fucata


title: Illumina NovaSeq 6000 (Ciona robusta)

organism: Ciona robusta


title: DNBSEQ-T7 (Caenorhabditis elegans)

organism: Caenorhabditis elegans


title: Fluidigm BioMark HD

status: Public on Jul 06 2023

city: La Jolla

first: Luc

last: Teyton

state: CA

address: 10550 North Torrey Pines Road

department: Immunology and Microbiology

institute: Scripps Research

description: Fluidigm BioMark multiplex single cell qPCR utilizing the Dynamic Array 96x96


title: Illumina NovaSeq 6000 (Acinetobacter baumannii; Lacticaseibacillus rhamnosus)

organism:
Acinetobacter baumannii
Lacticaseibacillus rhamnosus


title: Illumina HiSeq 2000 (Plenodomus lingam)

status: Public on Jul 05 2023

organism: Plenodomus lingam


title: Illumina NovaSeq 6000 (Cerrena unicolor)

organism: Cerrena unicolor


title: Illumina HiSeq 4000 (Micropterus salmoides)

status: Public on Jul 03 2023

organism: Micropterus salmoides


title: Illumina HiSeq 2500 (Bos indicus x Bos taurus)

organism: Bos indicus x Bos taurus


title: Illumina HiSeq 4000 (Arabidopsis)

organism: Arabidopsis


title: Illumina NovaSeq 6000 (Bifidobacterium breve)

organism: Bifidobacterium breve


title: nCounter® NanoString Tumor Signaling 360™ Panel

distribution: commercial


title: NextSeq 2000 (Mus musculus; Rattus norvegicus)

organism:
Mus musculus
Rattus norvegicus


title: NextSeq 2000 (Pseudomonas aeruginosa PA14)

organism: Pseudomonas aeruginosa PA14


title: Agilent-045341 ATH_chlpl_8x60K_Nov2012

city: London

first: Guy

last: Hanke

address: Mile End

department: School of Biological and Behavioural Sciences

country: United Kingdom

institute: Queen Mary University of London

organism: Arabidopsis thaliana

description:
Arrays of this design have barcodes that begin with 16045341 or 2545341.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: PromethION (Rattus norvegicus)

organism: Rattus norvegicus


title: RT² Profiler PCR Array Mouse Fibrosis

city: San Diego

first: Tiziano

last: Pramparo

address: 3611 Valley Centre Drive

department: R&D

institute: Travere

organism: Mus musculus

description:
PCR assay
The Mouse Fibrosis RT² Profiler PCR Array profiles the expression of 84 key genes involved in dysregulated tissue remodeling during the repair and healing of wounds. Wound healing consists of  three phases: inflammation, granulation and tissue remodeling. During tissue remodeling, apoptosis removes myofibroblasts, and the deposited extracellular matrix (ECM) is remodeled to resemble the original tissue. Fibrosis occurs when inappropriate tissue remodeling results in excess ECM deposition due to inappropriate survival of myofibroblasts or lack of ECM proteolytic degradation. The inflammation and enhanced TGFß signaling often present in fibrotic tissues causes cells to differentiate into myofibroblasts via epithelial-to mesenchymal transition (EMT). On the other side of the spectrum, chronic wounds feature dysregulated tissue remodeling with enhanced ECM degradation. This array contains genes encoding ECM remodeling enzymes, TGFß signaling molecules and inflammatory cytokines, as well as additional genes important for fibrosis. Using real-time PCR, you can easily and reliably analyze the expression of a focused panel of genes involved in fibrosis and chronic wounds with this array.


title: Illumina HiSeq 4000 (Camellia reticulata)

organism: Camellia reticulata


title: Illumina HiSeq 2000 (Nicotiana benthamiana; Verticillium dahliae)

organism:
Nicotiana benthamiana
Verticillium dahliae