title: Agilent-067065 Clostridium difficile R20291 [Probe Name Version]

status: Public on Nov 30 2023

city: Tainan

first: JunJia

last: Gong

address: University Rd, No. 1

department: Institute of Basic Medical Sciences

country: Taiwan

institute: National Cheng Kung University

organism: Clostridioides difficile

technology: in situ oligonucleotide

distribution: custom-commercial

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/ .


title: Agilent-067065 Clostridium difficile R20291 [Feature Number Version]


title: Illumina NovaSeq 6000 (Avena sativa)

last: GEO

country: USA

organism: Avena sativa

technology: high-throughput sequencing

distribution: virtual


title: Illumina NovaSeq 6000 (Eriobotrya japonica)

organism: Eriobotrya japonica


title: Illumina NovaSeq 6000 (Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841)


title: Illumina NovaSeq 6000 (Acinetobacter baumannii ACICU)

organism: Acinetobacter baumannii ACICU


title: BGISEQ-500 (Rhodotorula mucilaginosa)

status: Public on Nov 29 2023

organism: Rhodotorula mucilaginosa


title: Illumina NovaSeq 6000 (Talaromyces marneffei)

organism: Talaromyces marneffei


title: MGISEQ-2000RS (Monascus purpureus)

organism: Monascus purpureus


title: Illumina NovaSeq 6000 (Homo sapiens; Sus scrofa)

organism:
Homo sapiens
Sus scrofa


title: DNBSEQ-T7 (Oryctolagus cuniculus)

organism: Oryctolagus cuniculus


title: Illumina HiSeq 4000 (Medicago truncatula)

status: Public on Nov 28 2023

organism: Medicago truncatula


title: Illumina HiSeq 4000 (Mycobacterium marinum)

organism: Mycobacterium marinum


title: Illumina NovaSeq 6000 (Escherichia coli str. K-12 substr. W3110)

status: Public on Nov 27 2023


title: BGISEQ-500 (Arctium lappa)

organism: Arctium lappa


title: Illumina HiSeq 2500 (Nitrososphaera viennensis EN76)

organism: Nitrososphaera viennensis EN76


title: Illumina NovaSeq 6000 (Ruditapes philippinarum)

organism: Ruditapes philippinarum


title: Sequel II (Macaca fascicularis)

organism: Macaca fascicularis


title: Illumina NovaSeq 6000 (Juglans nigra)

organism: Juglans nigra


title: DNBSEQ-T7 (Nicotiana tabacum)

status: Public on Nov 26 2023

organism: Nicotiana tabacum


title: Illumina HiSeq 2500 (Hoolock leuconedys)

organism: Hoolock leuconedys


title: Illumina HiSeq 4000 (Haloferax volcanii DS2)

status: Public on Nov 24 2023

organism: Haloferax volcanii DS2


title: MGISEQ-2000RS (Oryza sativa)

status: Public on Nov 23 2023

organism: Oryza sativa


title: Illumina NovaSeq 6000 (Argopecten irradians irradians)

organism: Argopecten irradians irradians


title: Sequel II (Amphidinium carterae)

status: Public on Nov 25 2023

organism: Amphidinium carterae


title: Illumina NovaSeq 6000 (Artemia parthenogenetica)

status: Public on Nov 22 2023

organism: Artemia parthenogenetic lineage


title: NextSeq 2000 (blank sample)

organism: blank sample


title: Illumina HiSeq 2000 (Abies koreana)

status: Public on Nov 21 2023

organism: Abies koreana


title: Illumina NovaSeq 6000 (Muscidifurax zaraptor)

organism: Muscidifurax zaraptor


title: Illumina HiSeq 2000 (Hoolock leuconedys)


title: Illumina NovaSeq 6000 (Trachinotus carolinus)

status: Public on Nov 20 2023

organism: Trachinotus carolinus


title: IPLEX VeridoseCore SNP panel microarray

city: Cape Coast

first: Nicholas

middle: Ekow

last: Thomford

state: Central

address: PMB, University of Cape Coast School of Medical Sciences, Coast Coast, Ghana

department: Dept. of Med. Biochem.,SMS, CoHAS,

country: Ghana

institute: University of Cape Coast, Ghana

organism: Homo sapiens

technology: other

description: MassArrayiPLEX genotyping assay using the iPLEX Gold genotyping kit


title: Illumina NovaSeq 6000 (Leporidae)

organism: Leporidae


title: HiSeq X Five (Mus musculus)

organism: Mus musculus


title: HiSeq X Ten (Vitis x labruscana x Vitis vinifera)

status: Public on Nov 16 2023

organism: Vitis x labruscana x Vitis vinifera


title: Illumina NextSeq 500 (Serratia plymuthica)

organism: Serratia plymuthica


title: Illumina NextSeq 500 (Argyrosomus regius)

status: Public on Nov 15 2023

organism: Argyrosomus regius


title: Resolve Biosciences Molecular Cartography Human custom platform (100 genes)

city: Heidelberg

first: Konstantin

last: Okonechnikov

state: Germany

address: Im Neuenheimer Feld 280

department: Pediatric Neurooncology

country: Germany

institute: German Cancer Research Center

description: Molecular Cartography (100-plex combinatorial single molecule fluorescence in-situ hybridization)

manufacture_protocol: Probe panel for 100 genes designed using Resolve Biosciences proprietary design software, as previously reported (reference paper PMID: 35021063).


title: NextSeq 1000 (Vibrio cholerae)

status: Public on Nov 14 2023

organism: Vibrio cholerae


title: Illumina HiSeq 4000 (Eptatretus burgeri)

status: Public on Nov 13 2023

organism: Eptatretus burgeri


title: NextSeq 2000 (Homo sapiens; Saccharomyces cerevisiae)

organism:
Saccharomyces cerevisiae
Homo sapiens


title: Illumina HiSeq 2000 (Pseudomonas syringae pv. actinidiae str. Shaanxi_M228)

status: Public on Nov 09 2023


title: NextSeq 2000 (Streptococcus salivarius K12)

organism: Streptococcus salivarius K12


title: RT2 profiler PCR Array Mouse osteogenic gene

city: Baltimore

first: jiekang

last: wang

state: MD

address: 365 homeland Southway unit 3A

institute: Johns Hopkins University

technology: RT-PCR

description: The Mouse osteogenesis RT² Profiler PCR Array profiles the expression of 84 key genes involved in brain micro-vessel treatment. In this experiment, we established an ex vivo cerebral microvascular model and treated it with PDGF-BB. There are two samples: one is the control group, and the other is the PDGF-BB treated group.

manufacture_protocol: see manufacturer's website


title: NextSeq 2000 (Saccharomyces cerevisiae BY4741)

status: Public on Nov 17 2023

organism: Saccharomyces cerevisiae BY4741


title: Illumina HiSeq 2000 (Pseudomonas syringae pv. tomato str. DC3000)


title: nCounter® Human Glial Profiling Panel

city: Hillsboro

first: Meredith

middle: A

last: Kelleher

address: 505 NW 185th Avenue

department: Division of Reproductive and Developmental Sciences

institute: Oregon National Primate Research Center/ Oregon Health and Science University

description:
mRNA. NanoString's patented molecular barcodes provide a true digital detection technology capable of highly multiplexed analysis. CodeSet chemistry uses a Reporter CodeSet and a Capture ProbeSet to bind to the target. Excess probes are removed, and hybridized probes bind to the cartridge. The target-probe complexes are immobilized and aligned on the cartridge, and the barcodes are counted on nCounter® systems.
https://nanostring.com/products/ncounter-assays-panels/neuroscience/glial-profiling/


title: TaqMan Array Human MicroRNA A+B Cards Set v3.0

city: Hannover

first: Ke

last: Xiao

address: Carl-Neuberg-Straße 1

department: IMTTS

institute: Medizinische Hochschule Hannover (MHH)

description: miRNAs PCR assay


title: nCounter® Human Neuroinflammation Panel

description:
mRNA. NanoString's patented molecular barcodes provide a true digital detection technology capable of highly multiplexed analysis. CodeSet chemistry uses a Reporter CodeSet and a Capture ProbeSet to bind to the target. Excess probes are removed, and hybridized probes bind to the cartridge. The target-probe complexes are immobilized and aligned on the cartridge, and the barcodes are counted on nCounter® systems.
(https://nanostring.com/products/ncounter-assays-panels/neuroscience/neuroinflammation/)


title: LAM Antigens Array

status: Public on Nov 08 2023

city: Bronx

first: Jacqueline

middle: M.

last: Achkar

address: 1300 Morris Park Avenue

institute: Albert Einstein College of Medicine

organism: synthetic construct

technology: spotted peptide or protein

description: Synthetic antigens coupled to bovine serum albumin, Subarray 30 and Subarray 61

distribution: non-commercial

manufacturer: Todd Lowary, University of Alberta and Engineering Arts Tempe Arizona

manufacture_protocol: Microarray slides were printed at Engineering Arts LLC (Phoenix, AZ). BSA conjugates were noncontact printed on Schott type E slides (Schott North America, Inc., Elmsford, NY) using an Engineering Arts au301 Rainmaker microarray printer and dispensed at 100 ?g/mL in buffer (1:10 phosphate-buffered saline plus 0.005% vol/vol Triton X-100). Antigens were dispensed at 360 pL per spot to produce 140- to 160-?m diameter spots in triplicate. Relative humidity was maintained at 65%; slides were subjected to white light for 100% inline drop inspection. Printing was carried out in a HEPA-filtered environment at room temperature. Printed slides were stored at ?20 °C until use. Each slide contains 24 identical array containing 30 components printed in duplicate.


title: Bio-Rad Lentinula edodes RT-PCR Detection System

city: wuhan

first: jiaxin

last: song

state: Hubei

address: No. 1, Shizishan Street, Hongshan District, Wuhan City, Hubei Province

department: College of Plant Science & Technology

country: China

institute: Huazhong Agricultural University

organism: Lentinula edodes

description:
Please note that Gene_ID (included in the SPOT_ID column) is derived from the annotation of the GFF3 file of this database
https://genome.jgi.doe.gov/portal/Lentinedodes1/Lentinedodes1.download.html [February 2019]
The genome sequence and gene prediction of Lentinula edodes W1-26 were not determined by the JGI, but were downloaded from ShiitakeGDB and have been published (PubMed: 27500531).
Please note that this copy of the genome is not maintained by the author and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins. The downloaded GFF3 file contained alternative models on a locus tagged with ".t2", ".t3", ".t4", and so on. We created the FilteredModels track so as to represent only non-overlapping genes, and the GeneCatalog was built based on the FilteredModels. Moreover, we discarded gene models having internal stops and transposable element-derived genes. As a result, 12,538 gene models were finally presented. All gene models before filtering can be found in ExternalModels track.


title: NanoString Human V3 miRNA assay

city: Oslo

first: Leonardo

middle: A.

last: Meza-Zepeda

address: Ullernchausseen 70

department: Department of Tumor Biology

country: Norway

institute: Oslo University Hospital


title: Illumina NovaSeq 6000 (Fusarium verticillioides)

organism: Fusarium verticillioides


title: RT² Profiler PCR Array Human Liver IFN-I response (custom)

city: Maisons-Alfort

first: Virginie

last: Doceul

address: 7 avenue du Général de Gaulle

country: France

institute: UMR VIROLOGIE INRAE-ANSES-ENVA

description:
Custom RT² Profiler? PCR Array designed to assess the expression of IFN-regulated genes in the liver
Qiagen RT² Profiler panel of PCR assays.

manufacture_protocol: See manufacturer's website


title: RT² Profiler PCR Array Swine IFN response (custom)

organism: Sus scrofa

description:
Customized Swine Type I Interferon Response PCR array designed to study the expression of 89 porcine genes involved in the IFN response
Qiagen RT² Profiler panel of PCR assays.


title: Illumina NovaSeq 6000 (Suricata suricatta)

status: Public on Nov 11 2023

organism: Suricata suricatta


title: Illumina NovaSeq 6000 (Tilapia)

organism: Tilapia


title: Illumina NovaSeq 6000 (Actinidia arguta)

organism: Actinidia arguta


title: NextSeq 1000 (Escherichia coli)

status: Public on Nov 07 2023

organism: Escherichia coli


title: Illumina NovaSeq 6000 (Gallus gallus; Mus musculus)

organism:
Gallus gallus
Mus musculus


title: RT² Profiler PCR Array Human Type I Interferon Response (custom)

organism: Homo sapiens

description:
Human Type I Interferon Response PCR array customised to include the selected human housekeeipng genes
Qiagen RT² Profiler panel of PCR assays.


title: Illumina NovaSeq 6000 (Coriandrum sativum)

status: Public on Nov 06 2023

organism: Coriandrum sativum


title: BioRad luminex (48plex human)

city: Nanjing

first: Ying

last: Wang

address: Guangzhou Road

institute: NanJing Medical University

distribution: commercial


title: Illumina HiSeq 2000 (Ligilactobacillus murinus)

organism: Ligilactobacillus murinus


title: DNBSEQ-G400 (Escherichia coli)


title: DNBSEQ-T7 (Macaca mulatta)

status: Public on Nov 03 2023

organism: Macaca mulatta


title: NextSeq 2000 (Eimeria maxima)

status: Public on Nov 05 2023

organism: Eimeria maxima


title: Agilent-084881 salmon microarray

status: Public on Nov 02 2023

city: ÅS

first: Gerrit

last: Timmerhaus

address: Osloveien 1

institute: Nofima AS

organism: Salmo salar

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina NovaSeq 6000 (archaeon)

organism: archaeon


title: Illumina NovaSeq 6000 (Cuniculiplasma divulgatum)

organism: Cuniculiplasma divulgatum


title: Illumina NovaSeq 6000 (Crassostrea angulata)

organism: Magallana angulata


title: Illumina NovaSeq 6000 (Amphiprion ocellaris)

status: Public on Nov 01 2023

organism: Amphiprion ocellaris


title: Illumina NovaSeq 6000 (Batrachochytrium dendrobatidis)

organism: Batrachochytrium dendrobatidis


title: Agilent-086551 Arraystar Rat circRNA Epitranscriptomic microarray

status: Public on Dec 25 2020

city: Rockville

first: Panos

last: Pan

address: 9430 Key West Avenue

institute: Arraystar Inc.

organism: Rattus norvegicus

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Arraystar Rat m6A Single Nucleotide Resolution V1 Microarray

status: Public on Apr 14 2020


title: Arraystar Mouse m6A Single Nucleotide Resolution V1 Microarray

organism: Mus musculus


title: Agilent-085983 Arraystar Mouse lncRNA V4 microarray

status: Public on Jul 26 2019


title: Complete Genomics (synthetic construct)

organism: synthetic construct


title: Agilent-085982 Arraystar human lncRNA V5 microarray


title: Agilent-085985 Arraystar Rat lncRNA V3 microarray


title: Arraystar Rat Epitranscriptomic microarray

status: Public on Dec 11 2018


title: Arraystar Mouse circRNA Epitranscriptomic microarray (Agilent-085868)

status: Public on Jan 18 2019


title: Agilent-085753 Arraystar Human Epitranscriptomic microarray

status: Public on Nov 02 2018


title: Arraystar Human m6A Single Nucleotide Resolution V1 Microarray


title: Agilent-085775 Arraystar Human circRNA Epitranscriptomic microarray


title: Arraystar Mouse SuperEnhancer microarray

status: Public on Feb 08 2018


title: Arraystar Human SuperEnhancer microarray (Agilent-085154)


title: Arraystar Mouse Epitranscriptomic microarray [Agilent-085754]


title: PromethION (Amphidinium carterae)

organism: Amphidinium carterae


title: Illumina HiSeq 2000 (Pseudomonas syringae pv. syringae B728a)

status: Public on Nov 09 2023

organism: Pseudomonas syringae pv. syringae B728a