title: Illumina MiniSeq (Allium cepa)

status: Public on Feb 29 2024

last: GEO

country: USA

organism: Allium cepa

technology: high-throughput sequencing

distribution: virtual


title: NextSeq 2000 (Mnemiopsis leidyi)

organism: Mnemiopsis leidyi


title: Illumina NextSeq 500 (Ephydatia muelleri)

organism: Ephydatia muelleri


title: Illumina HiSeq 4000 (Gallus)

organism: Gallus


title: NextSeq 2000 (Macaca fascicularis)

status: Public on Feb 28 2024

organism: Macaca fascicularis


title: Illumina NovaSeq 6000 (Caulobacter vibrioides NA1000)

organism: Caulobacter vibrioides NA1000


title: NextSeq 2000 (Callithrix jacchus)

organism: Callithrix jacchus


title: NextSeq 1000 (Escherichia coli BW25113)

organism: Escherichia coli BW25113


title: Illumina NovaSeq 6000 (Epimedium pubescens)

organism: Epimedium pubescens


title: Trypanosoma cruzi conserved proteome

city: New Orleans

first: Eric

last: Dumonteil

state: LA

address: 1440 Canal st.

department: Tropical Medicine

institute: Tulane University

organism: Trypanosoma cruzi

technology: spotted peptide or protein

distribution: non-commercial

manufacture_protocol: One copy of each unique 15-mer was synthesized on a C-terminal — BetaAla — Asp spacer in a 20 x 20 µm layout with 10 µm separation.


title: MWG Yeast Microarray YOMWG_15

status: Public on Feb 27 2024

city: Cuernavaca

first: Luis

last: Caspeta

state: Morelos

address: Av Universidad 2001

department: Ingeniería Celular y Biocatálisis

country: Mexico

institute: Instituto de Biotecnología - Universidad Nacional Autónoma de México

organism: Saccharomyces cerevisiae

technology: spotted oligonucleotide

description: Yeast 50-mer oligo library from MWGBiotech Oligo Sets (http:/www.mwgbiotech.com)

manufacturer: DNA Microarrays Unit of the Institute of Cellular Physiology, in the National Autonomous University of Mexico

manufacture_protocol: The microarray YOMWG_15, constructed for the yeast strain S288C, following  the fabrication of GPL18099, but using oligo set for S. cerevisiae.


title: Illumina NovaSeq 6000 (Vitis rotundifolia)

organism: Vitis rotundifolia


title: Illumina NovaSeq 6000 (Novosphingobium aromaticivorans DSM 12444)


title: Illumina HiSeq 2000 (Bacillus cereus)

organism: Bacillus cereus


title: Illumina NextSeq 500 (Arion vulgaris)

status: Public on Feb 26 2024

organism: Arion vulgaris


title: Illumina HiSeq 3000 (Cucumis melo)

status: Public on Feb 23 2024

organism: Cucumis melo


title: Illumina NovaSeq 6000 (Petaurus breviceps)

organism: Petaurus breviceps


title: Illumina NovaSeq 6000 (Pseudochirops cupreus)

organism: Pseudochirops cupreus


title: Agilent-087227 E. coli Gene Expression Microarray (Probe Name version)

city: Braunschweig

first: Mattes

last: Hintmann

address: Rebenring 56

department: Institut für Mikrobiologie

country: Germany

institute: TU Braunschweig

organism: Escherichia coli

technology: in situ oligonucleotide

distribution: custom-commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina NovaSeq 6000 (Distoechurus pennatus)

organism: Distoechurus pennatus


title: Illumina NovaSeq 6000 (Dactylopsila trivirgata)

organism: Dactylopsila trivirgata


title: Illumina NovaSeq 6000 (Tarsipes rostratus)

organism: Tarsipes rostratus


title: Illumina NovaSeq 6000 (Acrobates pygmaeus)

organism: Acrobates pygmaeus


title: Illumina NovaSeq 6000 (Pseudochirops corinnae)

organism: Pseudochirops corinnae


title: Illumina NovaSeq 6000 (Pseudochirops archeri)

organism: Pseudochirops archeri


title: Illumina NovaSeq 6000 (Phalanger gymnotis)

organism: Phalanger gymnotis


title: NanoString nCounter circRNA custom panel

status: Public on Feb 25 2024

city: Amsterdam

first: Silvia

last: D'Ambrosi

address: De Boelelaan 1118

country: Netherlands

institute: Amsterdam UMC

organism: Homo sapiens

technology: other

description: A custom-made panel targeting 78 circRNAs

manufacture_protocol: See manufacturer's website http://www.nanostring.com


title: HiSeq X Ten (Vombatus ursinus)

organism: Vombatus ursinus


title: NanoString Human PanCancer IO360™ Panel and Lymphoma Subtyping Test

city: Santa Monica

first: Simone

last: Filosto

state: California

address: 2400 Broadway

institute: Kite Pharma


title: Illumina NovaSeq 6000 (Thlaspi arvense)

organism: Thlaspi arvense


title: Illumina NovaSeq 6000 (Petauroides volans)

organism: Petauroides volans


title: Illumina NovaSeq 6000 (Macropus fuliginosus)

organism: Macropus fuliginosus


title: Illumina NovaSeq 6000 (Pseudocheirus peregrinus)

organism: Pseudocheirus peregrinus


title: Sequel II (Escherichia phage Lambda)

organism: Escherichia phage Lambda


title: Illumina HiSeq 4000 (Osmia excavata)

organism: Osmia excavata


title: Illumina NovaSeq 6000 (Osmia excavata)


title: DNBSEQ-G50 (Oryza sativa)

status: Public on Feb 22 2024

organism: Oryza sativa


title: Illumina NextSeq 500 (Vibrio campbellii ATCC BAA-1116)

organism: Vibrio campbellii ATCC BAA-1116


title: Illumina NovaSeq 6000 (Macropus giganteus)

organism: Macropus giganteus


title: Illumina HiSeq 4000 (Murid betaherpesvirus 8; Rattus norvegicus)

organism:
Rattus norvegicus
Murid betaherpesvirus 8


title: Ion Torrent S5 (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2)


title: Illumina HiSeq 2500 (Salmonella enterica subsp. enterica serovar Pullorum)

status: Public on Feb 20 2024


title: Illumina HiSeq 2500 (Streptomyces rapamycinicus)

organism: Streptomyces rapamycinicus


title: Illumina NovaSeq 6000 (Avicennia marina)

organism: Avicennia marina


title: Illumina NovaSeq 6000 (Intellagama lesueurii lesueurii)

organism: Intellagama lesueurii lesueurii


title: NextSeq 550 (Capsicum annuum)

status: Public on Feb 19 2024

organism: Capsicum annuum


title: Illumina HiSeq 4000 (Carassius gibelio)

organism: Carassius gibelio


title: Illumina NovaSeq 6000 (Platygyra daedalea)

status: Public on Feb 21 2024

organism: Alveopora daedalea


title: PamGene PTK Array

status: Public on Feb 17 2024

city: Freiburg

first: Robert

last: Zeiser

address: Hugstetter Straße 53

department: Interdisziplinäres Tumorzentrum

institute: University Medical Center Freiburg

organism: Mus musculus

distribution: commercial


title: NanoString nCounter custom mRNA expression panel

city: Toronto

first: Cynthia

last: Hawkins

state: ON

address: 555 University Ave.

department: Pediatric Laboratory Medicine

country: Canada

institute: The Hospital for Sick Children

organism: Homo sapiens

manufacture_protocol: see manufacturer web site


title: NextSeq 1000 (Macaca fascicularis)

status: Public on Feb 16 2024

organism: Macaca fascicularis


title: Illumina NextSeq 500 (Urosaurus ornatus)

organism: Urosaurus ornatus


title: QIAGEN RT2 profiler PCR Array [PARN-013Z]

city: Kashihara

first: Takuto

last: Shimizu

state: Nara

address: 840 Shijo-cho

department: Department of Urology

country: Japan

institute: Nara Medical University

organism: Rattus norvegicus

technology: RT-PCR

description: PCR assay panel

manufacture_protocol: see manufacturer's website


title: QIAGEN RT2 profiler PCR Array [PARN-120Z]

description: PCR assay panel


title: Illumina NextSeq 500 (Urosaurus graciosus; Urosaurus ornatus)

organism:
Urosaurus graciosus
Urosaurus ornatus


title: NextSeq 1000 (Gorilla gorilla)

organism: Gorilla gorilla


title: Illumina NextSeq 500 (Urosaurus graciosus)

organism: Urosaurus graciosus


title: Illumina HiSeq 2500 (Cimex lectularius)

organism: Cimex lectularius


title: Illumina NovaSeq 6000 (Oikopleura dioica)

organism: Oikopleura dioica


title: Illumina NovaSeq 6000 (Mus musculus x Rattus norvegicus)

organism: Mus musculus x Rattus norvegicus


title: Illumina NextSeq 500 (Aspergillus wentii)

status: Public on Feb 15 2024

organism: Aspergillus wentii


title: DNBSEQ-G400 (Nakaseomyces glabratus)

organism: Nakaseomyces glabratus


title: RT² ProfilerPCR Array for Dog Mesenchymal Stem Cells

city: Zagreb

first: Marina

last: Prišlin

address: Savska cesta 148

department: Virology Department

country: Croatia

institute: Croatian Veterinary Institute

organism: Canis lupus familiaris

description: RT-qPCR array panel


title: Illumina NextSeq 500 (Penicillium expansum)

status: Public on Feb 14 2024

organism: Penicillium expansum


title: Illumina MiSeq (Oikopleura dioica)


title: Nanostring nCounter Alzheimer's Disease Panel

city: Los Angeles

first: Constanza

middle: J

last: Cortes

address: 3715 McClintock Ave

institute: University of Southern California

description: nCounter® Analysis Systems for Biomarker Validation and Biomarker Development


title: Illumina HiSeq 2000 (Citrus x latifolia)

organism: Citrus x latifolia


title: Illumina NovaSeq 6000 (Phoenix dactylifera)

organism: Phoenix dactylifera


title: DNBSEQ-G400 (Brassica oleracea var. italica)

status: Public on Feb 13 2024

organism: Brassica oleracea var. italica


title: Illumina HiSeq 2000 (Citrus x aurantiifolia)

organism: Citrus x aurantiifolia


title: Illumina NovaSeq 6000 (Lactococcus lactis)

organism: Lactococcus lactis


title: Illumina HiSeq 4000 (Limulus polyphemus)

organism: Limulus polyphemus


title: NextSeq 550 (Limulus polyphemus)


title: Illumina NovaSeq 6000 (Citrobacter freundii)

organism: Citrobacter freundii


title: PromethION (Solanum nigrum)

status: Public on Feb 12 2024

organism: Solanum nigrum


title: Illumina NextSeq 500 (Mammaliicoccus sciuri)

status: Public on Feb 09 2024

organism: Mammaliicoccus sciuri


title: PromethION (Saccharomyces cerevisiae S288C)

status: Public on Feb 10 2024

organism: Saccharomyces cerevisiae S288C


title: Illumina NovaSeq 6000 (Culex pipiens pallens)

organism: Culex pipiens pallens


title: Illumina HiSeq 2500 (Microcystis aeruginosa)

organism: Microcystis aeruginosa


title: Illumina NextSeq 500 (Kluyveromyces lactis; Saccharomyces cerevisiae)

status: Public on Feb 08 2024

organism:
Saccharomyces cerevisiae
Kluyveromyces lactis


title: Illumina HiSeq 4000 (Pinus densiflora)

organism: Pinus densiflora


title: HiSeq X Ten (Bifidobacterium animalis subsp. lactis)

organism: Bifidobacterium animalis subsp. lactis


title: Illumina NovaSeq 6000 (Lens culinaris)

organism: Lens culinaris


title: HiSeq X Ten (Lactobacillus acidophilus)

organism: Lactobacillus acidophilus


title: NanoString nCounter squid NFκB innate immunity

city: Hayes

first: Alexandrea

middle: (Lexi)

last: Duscher

state: VA

address: 1730 Sawgrass Pointe Dr

institute: University of Florida

organism: Euprymna scolopes

manufacture_protocol: NanoString Technologies


title: [Clariom_D_Human] Affymetrix Human Clariom D Assay (custom GENECODEG annotation)

status: Public on Feb 07 2024

city: MILAN

first: Luca

last: Agnelli

address: Venezian 1

department: Department of Advanced Diagnostics

country: Italy

institute: IRCCS Istituto Nazionale dei Tumori

organism: Homo sapiens

description: A custom annotation pipeline was applied that combined GENCODE v25 (Ensembl v87) annotations with the CDF (Chip Definition File) version 24 for gene annotations freely available at http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/24.0.0/gencodeg.asp, in order to withdraw probes that map to regions where ambiguous detection due to transcript overlap might occur, as described in Todoerti K et al,  Methods Mol Biol. 2021;2348:45-53.

manufacture_protocol: See manufacturer's website


title: Illumina NovaSeq 6000 (Musculus)

status: Public on Feb 27 2024

organism: Musculus


title: Illumina MiSeq (food metagenome)

organism: food metagenome


title: Illumina HiSeq 4000 (Pneumocystis murina)

status: Public on Feb 06 2024

organism: Pneumocystis murina


title: Illumina NovaSeq 6000 (Rhodobacter capsulatus SB 1003)

organism: Rhodobacter capsulatus SB 1003


title: Illumina NovaSeq 6000 (Pseudomonas syringae pv. syringae)

status: Public on Feb 05 2024

organism: Pseudomonas syringae pv. syringae


title: BioMark Single Cell qPCR

status: Public on Feb 01 2024

city: La Jolla

first: Luc

last: Teyton

state: CA

address: 10550 North Torrey Pines Road

department: Immunology and Microbiology

institute: Scripps Research

organism: Mus musculus

description: PCR assay


title: BIO-RAD C1000 Dx Thermal Cycler with CFX DX ORM Real-Time PCR System.

status: Public on Feb 04 2024

city: Iksan

first: Sujeevan

last: Rajendran

address: Muwang-ro

country: Sri Lanka

institute: Wonkwang University

organism: Solanum lycopersicum

description:
DHF-04580
Real-Time PCR Detection Systems


title: Illumina NovaSeq 6000 (Parascaris univalens)

organism: Parascaris univalens


title: Illumina NovaSeq 6000 (Malassezia globosa)

organism: Malassezia globosa


title: NextSeq 2000 (Mus musculus; Salmonella enterica)

organism:
Mus musculus
Salmonella enterica


title: NanoString nCounter human fibrosis panel [NS_HS_FIBROSIS_V2.0 or V2.1]

status: Public on Jan 23 2022

city: Saint-Priest-en-Jarez

first: Robin

last: Caire

address: 10 rue de la Marandière

department: Biology

country: France

institute: Université Jean Monnnet Saint-Etienne


title: Resolve Biosciences Molecular Cartography custom platform (94 genes)

city: Leuven

first: Elia

last: Micoli

address: Herestraat 49

department: VIB - Center for Brain and Disease Research

country: Belgium

institute: VIB - KU Leuven

organism: Mus

manufacture_protocol: Probe panel for 94 genes designed using Resolve Biosciences proprietary design software, as reported in table S4 of the manuscript .  Molecular Cartography (100-plex combinatorial single molecule fluorescence in-situ hybridization)


title: GeoMx human immuno-oncology protein panels

city: Dallas

first: Yujin

last: Hoshida

state: TX

address: 5323 Harry Hines Blvd

institute: University of Texas Southwestern Medical Center


status: Public on Oct 14 2013

city: Plainsboro

first: Yong

last: Wei

state: NJ

address: LTL227 Wathington Road

department: Molecular Biology

institute: Princeton University

organism:
Caenorhabditis elegans
Drosophila melanogaster
Danio rerio
Homo sapiens
Mus musculus
Rattus norvegicus

manufacture_protocol: NCode Multi-species miRNA Microarray Probe Set v2.0 were custom printed by a colleague onto Corning slides.


title: University of Cambridge/Illumina Sentrix Mouse-6 Expression BeadChip v1

status: Public on Jun 30 2009

city: Darlinghurst

first: Leonard

last: Goldstein

address: 384 Victoria St

country: Australia

institute: Garvan Institute of Medical Research

technology: oligonucleotide beads

description:
Data table column 'Refseq_id' lists all Refseq_ids assigned to a given probe based on improved annotations described at http://www.compbio.group.cam.ac.uk/Resources/Annotation/index.html.
Data table column 'Refseq_id_used' reports a unique representative Refseq ID per probe (required for one aspect of the analysis of GEO Series GSE15057).


title: University of Cambridge/Bead-based microRNA profiling platform version 4

manufacture_protocol: The expression of 318 unique murine miRNAs was determined using a bead-based flow-cytometric profiling platform as described previously (Lu et al. Nature 2005, Blenkiron et al. Genome Biology 2007). The platform was adapted to include 334 probes for 318 unique murine miRNAs based on the miRNA repository miRBase 9.1 as well as probes for six artificial control RNAs. In brief, oligonucleotide capture probes complementary to the miRNAs of interest were conjugated to colour coded polystyrene beads (xMAP beads, Luminex Corporation, Austin, TX, USA) allowing the simultaneous detection of 90 different target miRNAs.


title: Illumina HiSeq 2500 (Pneumocystis carinii)

last: GEO

organism: Pneumocystis carinii


title: Illumina MiSeq (human blood metagenome)

organism: human blood metagenome


title: Illumina NovaSeq 6000 (Solanum habrochaites)

status: Public on Feb 02 2024

organism: Solanum habrochaites


title: Bead-based microRNA profiling platform version 3

status: Public on Oct 08 2007

description:
Capture oligonucleotides were crosslinked to uniquely coloured Luminex xMap beads, which serve as discriminator of probe identity. This platform includes 359 probes (310 unique microRNA probes and 6 unique control probes), designed based on the microRNA registry Rfam 7.
Keywords = bead
Keywords = Luminex
Keywords = oligonucleotide
Keywords = miRNA
Keywords = microRNA

first: Eric

middle: A

last: Miska

manufacture_protocol: other


title: Illumina NovaSeq 6000 (Pseudocheirus occidentalis)

status: Public on Feb 23 2024

organism: Pseudocheirus occidentalis


title: QIAGEN RT2 profiler PCR Array [PARN-028Z]

status: Public on Feb 17 2024

organism: Rattus norvegicus

description: PCR assay panel