title: Illumina HiSeq 4000 ([Ruminococcus] torques VIII-239)

status: Public on Mar 31 2024

last: GEO

country: USA

organism: [Ruminococcus] torques VIII-239

technology: high-throughput sequencing

distribution: virtual


title: Sequel II (Ovis aries)

status: Public on Mar 29 2024

organism: Ovis aries


title: PromethION (Ovis aries)


title: Illumina HiSeq 2500 (Pichia kudriavzevii)

organism: Pichia kudriavzevii


title: PIADC Mod5 Bovine ISG and Adaptive Immunity Gene RT-qPCR Panels

status: Public on Mar 30 2024

city: Rockville

first: Fayna

last: Diaz San Segundo

state: MD

address: 5601 Fisher Ln

department: NIAID-DMID-OBRRTR

institute: NIH

organism: Bos taurus

technology: RT-PCR

description: PCR assay

manufacture_protocol: see manufacturer's website


title: Illumina NovaSeq 6000 (Eptesicus fuscus)

status: Public on Mar 28 2024

organism: Eptesicus fuscus


title: Illumina NovaSeq 6000 (Acanthamoeba castellanii)

organism: Acanthamoeba castellanii


title: NextSeq 550 (Xylanibacter ruminicola)

organism: Xylanibacter ruminicola


title: DNBSEQ-G50 (Saccharomyces cerevisiae)

organism: Saccharomyces cerevisiae


title: Illumina NextSeq 500 (Homo sapiens; Pan troglodytes)

status: Public on Mar 27 2024

organism:
Pan troglodytes
Homo sapiens


title: Illumina NovaSeq 6000 (Mandarin fish ranavirus)

status: Public on Mar 26 2024

organism: Mandarin fish ranavirus


title: Illumina NovaSeq 6000 (Segatella bryantii)

organism: Segatella bryantii


title: Illumina NovaSeq 6000 (Xylanibacter ruminicola)


title: NextSeq 2000 (Caulobacter sp. Root343)

organism: Caulobacter sp. Root343


title: DNBSEQ-T7 (Bradyrhizobium diazoefficiens USDA 110)

organism: Bradyrhizobium diazoefficiens USDA 110


title: NextSeq 2000 (Trypanosoma brucei)

organism: Trypanosoma brucei


title: PromethION (Solanum dulcamara)

status: Public on Mar 25 2024

organism: Solanum dulcamara


title: Illumina NovaSeq 6000 (Homo sapiens; Pseudomonas aeruginosa)

organism:
Pseudomonas aeruginosa
Homo sapiens


title: nCounter Human AutoImmune Profiling Panel

city: Nantes

first: Frédéric

last: Ebstein

address: IRS-UN - 8 quai Moncousu - BP 70721

department: L'unité de recherche de l'institut du thorax, Inserm UMR 1087

country: France

institute: French Institute of Health and Medical Research (Inserm)

organism: Homo sapiens

technology: other

distribution: custom-commercial


title: Illumina NextSeq 500 (Escherichia coli O157:H7)

status: Public on Mar 21 2024

organism: Escherichia coli O157:H7


title: HiSeq X Ten (Pantherophis guttatus)

organism: Pantherophis guttatus


title: Illumina NovaSeq 6000 (Pantherophis guttatus)


title: Illumina NextSeq 500 (Streptococcus agalactiae NEM316)

organism: Streptococcus agalactiae NEM316


title: NextSeq 2000 (Cryptosporidium parvum)

organism: Cryptosporidium parvum


title: Breast Cancer Custom NanoString Panel

status: Public on Mar 20 2024

city: Chicago

first: Olufunmilayo

middle: I

last: Olopade

state: IL

address: 900 E. 57th Street

institute: University of Chicago

manufacture_protocol: See manufacturer's web site.


title: nCounter Canine IO Panel with 30 probe PanelPlus

city: Berlin

first: Alexander

middle: F. H.

last: Haake

address: Robert-von-Ostertag-Straße 15

department: Department of Veterinary Medicine

country: Germany

institute: Freie Universität Berlin

organism: Canis lupus familiaris

description: NS_CanineIO_v1.0+PLS_FUBerlin_CanIO_C9149; n6_vDV1

manufacture_protocol:
direct mRNA hybridisation panel

https://nanostring.com/products/ncounter-assays-panels/oncology/canine-io/


title: [NIAID/LISB]-Mouse

city: Bethesda

first: Matthew

middle: James

last: Marino

address: 9000 Rockville Pike

department: NIAID

organism: Mus musculus


title: MinION (metagenomes)

organism: metagenomes


title: Illumina NovaSeq 6000 (Huso dauricus x Acipenser schrenckii)

status: Public on Mar 19 2024

organism: Huso dauricus x Acipenser schrenckii


title: AB 5500xl Genetic Analyzer (Pseudomonas sp. OST1909)

organism: Pseudomonas sp. OST1909


title: Illumina NovaSeq 6000 (Eonycteris spelaea)

organism: Eonycteris spelaea


title: MGISEQ-2000RS (Bradyrhizobium diazoefficiens USDA 110)


title: NextSeq 2000 (Equus caballus)

organism: Equus caballus


title: Illumina NextSeq 500 (Spizellomyces punctatus)

status: Public on Mar 18 2024

organism: Spizellomyces punctatus


title: Illumina NextSeq 500 (Naegleria gruberi)

organism: Naegleria gruberi


title: Illumina NovaSeq X Plus (Rattus norvegicus)

organism: Rattus norvegicus


title: Illumina NextSeq 500 (Acanthamoeba castellanii)

organism: Acanthamoeba castellanii


title: Illumina NovaSeq 6000 (Populus)

status: Public on Mar 15 2024

organism: Populus


title: Illumina NovaSeq X Plus (Schmidtea mediterranea)

organism: Schmidtea mediterranea


title: Illumina NovaSeq 6000 (Staphylococcus epidermidis ATCC 12228)

status: Public on Mar 14 2024

organism: Staphylococcus epidermidis ATCC 12228


title: PacBio RS II (Morus alba)

organism: Morus alba


title: NextSeq 2000 (Sorghum bicolor)

organism: Sorghum bicolor


title: Illumina NovaSeq 6000 (Morus alba)


title: Illumina NextSeq 500 (human gammaherpesvirus 4)

status: Public on Mar 22 2024

organism: human gammaherpesvirus 4


title: NanoString mouse Pancancer immune panel with custom code set [NS_Mm_CancerImm_C3400+PLS_Fairc_Mm_fib_C5313]

city: cleveland

first: Hidetoshi

last: Tsuda

state: ohio

address: 9500 euclid ave

institute: cleveland clinic

distribution: commercial

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: Illumina NovaSeq 6000 (Bufo gargarizans)

status: Public on Mar 13 2024

organism: Bufo gargarizans


title: Illumina NovaSeq 6000 (Yucca flaccida)

organism: Yucca flaccida


title: Illumina NovaSeq 6000 (Caulobacter vibrioides; Escherichia coli K-12)

organism:
Escherichia coli K-12
Caulobacter vibrioides


title: NanoString GeoMx Cancer Transcriptome Atlas Human RNA

status: Public on Mar 11 2024

city: Lund

first: Martin

last: Lauss

address: Barngatan 2B

department: Dept of Oncology

country: Sweden

institute: Lund University

organism: Homo sapiens

manufacture_protocol: See manufacturer's website


title: PacBio RS (synthetic construct)

organism: synthetic construct


title: Schizosaccharomyces pombe orf 3.1.1 array

city: London

first: Shaimaa

last: Hassan

address: Gower Street, Darwin Building London

department: Bioscience

country: United Kingdom

institute: UCL

organism: Schizosaccharomyces pombe

technology: spotted oligonucleotide

distribution: non-commercial

manufacture_protocol: Array elements were generated for the annotated S. pombe genome using PCR and specific primer pairs. Primers, chosen to ensure unique amplification, varied in length, melting temperatures, and GC contents. Amplicons, containing exclusively exon sequences, were verified against the genome to avoid significant similarity with other sequences. Additionally, various genomic features including mitochondrial genes, pseudogenes, and RNA genes, totaling 5269 elements, were also amplified. Control elements from B. subtilis were included. The PCR process involved two rounds, utilizing gene-specific primers and a universal sequence, with products verified for consistency. Post-PCR, the products underwent filtration, arraying, and storage, with duplicate spots printed per slide for robust measurements. Quality control was conducted through hybridization tests.


title: Illumina NovaSeq 6000 (Trachemys scripta)

organism: Trachemys scripta


title: Illumina NextSeq 500 (Clostridium senegalense)

organism: Clostridium senegalense


title: Element AVITI (Homo sapiens)

status: Public on Mar 12 2024


title: NextSeq 550 (Rhodococcus jostii)

organism: Rhodococcus jostii


title: Illumina HiSeq 4000 (Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150)

status: Public on Mar 08 2024


title: Illumina HiSeq 4000 (Salmonella enterica subsp. enterica serovar Typhi str. Ty2)


title: Illumina HiSeq 4000 (Salmonella enterica subsp. enterica serovar Typhimurium str. D23580)


title: Illumina HiSeq 4000 (Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74)


title: Illumina NovaSeq 6000 (Ceratotherium simum simum)

status: Public on Mar 06 2024

organism: Ceratotherium simum simum


title: HiSeq X Ten (Escherichia coli J53; Salmonella enterica)

status: Public on Mar 07 2024

organism:
Salmonella enterica
Escherichia coli J53


title: Pyromark MD Pyrosequencing

city: Santa Cruz

first: Audrie

last: Lin

state: CA

address: METX, 1156 High St.

department: Microbiology and Environmental Toxicology

institute: University of California, Santa Cruz

manufacture_protocol: see manufacturer's web site


title: NextSeq 550 (Enterobacter sp. BIDMC93)

organism: Enterobacter sp. BIDMC93


title: NextSeq 550 (Enterobacter cloacae)

organism: Enterobacter cloacae


title: Illumina NovaSeq 6000 (Allium cepa)

organism: Allium cepa


title: Illumina NovaSeq X (Mus musculus)

status: Public on Mar 23 2024

organism: Mus musculus


title: DNBSEQ-G400 (Setaria viridis)

status: Public on Mar 05 2024

organism: Setaria viridis


title: Agilent-085218 Surrey_OGT_v2_2017 084542 [Probe Name version]

status: Public on Mar 09 2024

city: Guildford

first: Simon

last: Archer

address: Stag Hill

institute: University of Surrey

technology: in situ oligonucleotide

description:
Original 2009 4x44k probes comprising standard Agilent probes and Per related transcripts custom probes PLUS lncRNA targeting probes (LNCipedia 2016) and Per3 related exon junctions - high signal probes

Arrays of this design have barcodes that begin with 16085218 or 2585218.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Names.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: DNBSEQ-G400 (Oryza sativa)

organism: Oryza sativa


title: MinION (Brucella abortus 2308)

status: Public on Mar 04 2024

organism: Brucella abortus 2308


title: NextSeq 2000 (Chlamydomonas reinhardtii)

organism: Chlamydomonas reinhardtii


title: Mycobacterium leprae Agilent Microarray Gene Expression 8x15K Arrays AMADID: 84765

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

country: India

institute: Genotypic Technology

organism: Mycobacterium leprae


title: MinION (Caulobacter vibrioides NA1000)

organism: Caulobacter vibrioides NA1000


title: MGISEQ-2000RS (Phytophthora sojae)

status: Public on Mar 03 2024

organism: Phytophthora sojae


title: CDI  LABS HUMAN PROTEOME MICROARRAY v4.0

status: Public on Mar 02 2024

city: Foshan

first: He

middle: Yan

last: Bin

state: GUANGDONG

address: Sino-European Center A, 2 Lingnan Avenue South, Shunde, Foshan, Guangdong, China

country: China

institute: BCBIO

organism: Homo sapiens

technology: spotted peptide or protein

manufacture_protocol:
Protein encoding open reading fromes(ORFs) were obtoined from public ORF librories or independently synthesized by the lobs of HengZhu & Seth Backshaw at Johns Hopkins University.
Using Gateway cloningin E. coli, individual ORF DNA sequences were shuttled into a yeast high-copy expression vector (pEGH-A) that produces N-terminal GST-fusion proteins.
Protein-encoding vectors were rescued from E.coli and used to transform S.cerevisiae yeast. Yeast were grown on plates to select individual transformed clones.
Successfully transformed yeast clones were bideirectionally sequenced to confirm correct ORF insertion and expected protein identity.Clones failing sequence QC were resynthesized.
To produce proteins, sequence-confirmed yeast clones are grown,lysed,and harvested.0.1% Triton buffers remove lipids. GST-fusion proteins are purified via GST-binding agarose beads.
For each protein production lot,random wells are run on gels to confirm purity and expected molecular weight. Plates with a protein sample failing gel QC remade.
The prolein production lot is aliquoted and frozen. Each protein lot can produce around 14000 HuProt TM arrays. Arravs are printed in batches of 600 on nitrocellulose sides using Arrayjet printers.
Two slides from each batch are stained with anti-GST; >95% of spots must be GST+ for the array batch to pass QC. This confirms round-trip success of GST-fusion libranry synthesis & printing.


title: Utz Lab ACA Array version 2

city: Stanford

first: Allan

last: Feng

address: 269 Campus Dr

department: Imm/Rheum

institute: Stanford School of Medicine

organism:
Escherichia coli
Homo sapiens

description: Homo sapiens, E.Coli, HEK293 cells

manufacture_protocol: We conjugated recombinant protein antigens to uniquely barcoded magnetic  beads (MagPlex® Microspheres). 8 ug of each antigen or control antibody was diluted in phosphate buffered saline (PBS) and transferred to 96-well plates. Diluted antigens and control antibodies were conjugated to 1 million carboxylated magnetic beads per ID.


title: Utz Lab CTD Array version 2

organism:
Escherichia coli
Triticum aestivum
Spodoptera frugiperda
Homo sapiens
Sus scrofa
Bos taurus
Capra hircus


title: MinION (Trichomonas vaginalis)

organism: Trichomonas vaginalis


title: MinION (Tritrichomonas foetus)

organism: Tritrichomonas foetus


title: MinION (Naegleria gruberi)

organism: Naegleria gruberi


title: MinION (Giardia muris)

organism: Giardia muris


title: BCBIO HUMAN CUSTOM PROTEOME MICROARRAY

manufacturer: BCBIO (Guangzhou BCBIO Biotechnology Co., Ltd.)

manufacture_protocol:
Protein encoding open reading fromes(ORFs) were obtoined from public ORF librories or independently synthesized by the lobs of HengZhu & Seth Backshaw at Johns Hopkins University.
Using Gateway cloningin E. coli, individual ORF DNA sequences were shuttled into a yeast high-copy expression vector (pEGH-A) that produces N-terminal GST-fusion proteins.
Protein-encoding vectors were rescued from E.coli and used to transform S.cerevisiae yeast. Yeast were grown on plates to select individual transformed clones.
Successfully transformed yeast clones were bideirectionally sequenced to confirm correct ORF insertion and expected protein identity.Clones failing sequence QC were resynthesized.
To produce proteins, sequence-confirmed yeast clones are grown,lysed,and harvested.0.1% Triton buffers remove lipids. GST-fusion proteins are purified via GST-binding agarose beads.
For each protein production lot,random wells are run on gels to confirm purity and expected molecular weight. Plates with a protein sample failing gel QC remade.
The prolein production lot is aliquoted and frozen. Arravs are printed on nitrocellulose sides using Arrayjet printers.
Two slides from each batch are stained with anti-GST; >95% of spots must be GST+ for the array batch to pass QC. This confirms round-trip success of GST-fusion libranry synthesis & printing.


title: Illumina NovaSeq 6000 (Lasiodiplodia iranensis)

status: Public on Mar 01 2024

organism: Lasiodiplodia iranensis


title: MinION (Entamoeba histolytica)

organism: Entamoeba histolytica


title: Illumina MiniSeq (Salmonella enterica subsp. enterica serovar Newport)


title: Sequel (human metagenome)

organism: human metagenome


title: NimbleGen Mouse 12x135K array [100718_MM9_EXP]

status: Public on Dec 21 2018

city: Xi'an

first: Jing

last: Li

state: Shaanxi

address: 157 Xi Wu Road

department: Dermatology

institute: Northwest Hospital, Xi'an Jiaotong University

organism: Mus musculus

manufacture_protocol: See manufacturer's website at http://www.nimblegen.com/.


title: Agilent-043017 QBiC 8 x 60k E.coli K-12 Expression Ver.1

status: Public on Sep 16 2014

city: Suita

first: Chikara

last: Furusawa

state: Osaka

address: 6-2-3 Furuedai

department: Quantitative Biology Center (QBiC)

country: Japan

institute: RIKEN

organism: Escherichia coli


title: Illumina NextSeq 500 (Ctenopharyngodon idella)

status: Public on Mar 18 2024

organism: Ctenopharyngodon idella


title: Illumina NovaSeq X Plus (Mus musculus)

status: Public on Mar 10 2024


title: Illumina NovaSeq X Plus (Homo sapiens)


title: [Clariom_S_Human] Affymetrix Clariom S Assay, Human (Includes Pico Assay)

status: Public on Apr 27 2017

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

description:
This platform supports submissions for:
Clariom S Assay:
https://www.thermofisher.com/order/catalog/product/902926
Clariom S Pico Assay
https://www.thermofisher.com/order/catalog/product/902928

Annotations:
#%lib_set_version=r1
#%genome-species=Homo sapiens
#%genome-version=hg38
#%genome-version-ucsc=hg38
#%genome-version-ncbi=GRCh38
#%genome-version-create_date=2013-12-00
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-species=Homo sapiens
#%genome-lifted_from-version-ucsc=hg38
#%genome-lifted_from-version-ncbi=GRCh38
#%netaffx-annotation-date=2016-06-03
#%netaffx-annotation-netaffx-build=36

relation: Alternative to: GPL26070 (Alternative CDF [ClariomSHuman_Hs_ENTREZG_22.0.0])

relation: Alternative to: GPL30033 (Alternative CDF [ClariomSHuman_Hs_ENSG_24.0.0])

relation: Alternative to: GPL32050 (Alternative CDF [ClariomSHuman_Hs_ENSG_25.0.0])


title: Illumina NovaSeq X (Homo sapiens)

last: GEO