title: NanoString nCounter Human Host Response V1.1 Panel (custom)

status: Public on Jul 31 2024

city: Rixensart

first: Viviane

middle: Jeanne

last: Bechtold

state: Brabant Wallon

address: rue de l'Institut 89

department: Molecular Biology

country: Belgium

institute: GSK

organism: Homo sapiens

technology: spotted oligonucleotide

description: nCounter Human Host Response panel [GPL31975] + custom panel (ANKRD22, BATF2, CALHM6, CEACAM1, DOCK4, EFCAB2, EPSTI1, ETV7, FCGR1B, FOSB, GPR84, IFI44L, MYOF, PARP14, SERPING1, SLAMF8, TNFAIP6, VAMP5, WARS1) + Housekeeping genes + (ABCF1, ALAS1, GUSB, HPRT1, MRPS7, NMT1, NRDE2, OAZ1, PGK1, SDHA, STK11IP, TBP).

distribution: commercial


title: UG 100 (Homo sapiens)

last: GEO

country: USA

technology: high-throughput sequencing

distribution: virtual


title: HiSeq X Ten (Cyanidioschyzon merolae)

status: Public on Jul 30 2024

organism: Cyanidioschyzon merolae


title: Illumina NovaSeq 6000 (Manduca sexta)

organism: Manduca sexta


title: Illumina Novaseq X Plus (Mus musculus)

organism: Mus musculus


title: Illumina HiSeq 2500 (Polybia occidentalis)

status: Public on Jul 29 2024

organism: Polybia occidentalis


title: Illumina NovaSeq X Plus (Mycobacteroides abscessus ATCC 19977)

organism: Mycobacteroides abscessus ATCC 19977


title: NanoString nCounter Flex System Immune Profiling Panel

city: BORDEAUX

first: Estibaliz

last: LAZARO

address: Avenue Magellan

country: France

institute: Bordeaux Hospital University

technology: other

description:
NanoString nCounter Flex System and the nCounter Immune Profiling Panel, designed to probe 730 immune-related genes along with 40 reference controls
PCR assay

distribution: custom-commercial

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: Illumina NovaSeq 6000 (Cricetulus griseus; Homo sapiens; Mus musculus)

organism:
Homo sapiens
Cricetulus griseus
Mus musculus


title: Illumina HiSeq 2500 (Ammophila pubescens)

organism: Ammophila pubescens


title: Illumina NextSeq 500 (Schizosaccharomyces japonicus yFS275)

status: Public on Jul 26 2024

organism: Schizosaccharomyces japonicus yFS275


title: DNBSEQ-G400 (Hordeum vulgare)

status: Public on Jul 25 2024

organism: Hordeum vulgare


title: NextSeq 2000 (Streptococcus mitis)

organism: Streptococcus mitis


title: NextSeq 2000 (Streptococcus mutans)

organism: Streptococcus mutans


title: NextSeq 2000 (Streptococcus mitis; Streptococcus mutans)

organism:
Streptococcus mutans
Streptococcus mitis


title: Illumina NovaSeq X (Suid alphaherpesvirus 1; Sus scrofa)

status: Public on Jul 24 2024

organism:
Sus scrofa
Suid alphaherpesvirus 1


title: Illumina NovaSeq X Plus (Saccharomyces cerevisiae)

organism: Saccharomyces cerevisiae


title: MinION (metagenome)

organism: metagenome


title: Illumina NovaSeq 6000 (Pectobacterium carotovorum subsp. carotovorum)


title: Illumina NovaSeq 6000 (Rattus rattus)

status: Public on Jul 23 2024

organism: Rattus rattus


title: PromethION (Saccharomyces cerevisiae)


title: MGISEQ-2000RS (Mus)

organism: Mus


title: HiSeq X Ten (Cupriavidus nantongensis)

organism: Cupriavidus nantongensis


title: Illumina NovaSeq 6000 (Vibrio cholerae O1 str. C6706)

status: Public on Jul 22 2024

organism: Vibrio cholerae O1 str. C6706


title: DNBSEQ-T7 (Populus alba x Populus glandulosa)

organism: Populus alba x Populus glandulosa


title: Illumina NovaSeq 6000 (Saguinus oedipus)

organism: Saguinus oedipus


title: Illumina NovaSeq 6000 (Semiaphis heraclei)

organism: Semiaphis heraclei


title: Illumina NextSeq 500 (Fusarium graminearum; Schizosaccharomyces japonicus yFS275)

organism:
Fusarium graminearum
Schizosaccharomyces japonicus yFS275


title: Illumina NovaSeq 6000 (Peromyscus maniculatus; Peromyscus polionotus)

status: Public on Jul 21 2024

organism:
Peromyscus maniculatus
Peromyscus polionotus


title: Illumina NovaSeq 6000 (Vibrio cholerae C6706)

status: Public on Jul 20 2024

organism: Vibrio cholerae C6706


title: Illumina NovaSeq 6000 (Vibrio cholerae O1 biovar El Tor)

status: Public on Jul 19 2024

organism: Vibrio cholerae O1 biovar El Tor


title: DNBSEQ-T7 (Arabidopsis)

organism: Arabidopsis


title: Sequel IIe (synthetic construct)

organism: synthetic construct


title: The NanoString Neuropathology Profiling panel

city: Duarte

first: Yate-Ching

last: Yuan

state: CA

address: 1500 East Duarte

institute: City of Hope

organism: Homo sapiens


title: NextSeq 2000 (Macaca nemestrina)

organism: Macaca nemestrina


title: [Clariom430_2] Affymetrix Mouse Genome 430 2.0 Arraz [CDF: Brainarray Mouse4302_Mm_ENTREZG_25.0.0]

city: Mannheim

first: Carolina

last: Delatorre

address: Theodor-Kutzer-Ufer 1-3

country: Germany

institute: University Heidelberg

technology: in situ oligonucleotide

manufacture_protocol: This is identical to GPL29970 but a custom CDF environment was used to extract data [Brainarray Version 25, Mouse4302_Mm_ENTREZG]. CDF and other files can be downloaded at: (see web link below).


title: Illumina NovaSeq 6000 (Burkholderia gladioli)

organism: Burkholderia gladioli


title: [Clariom_S_Human] Affymetrix Clariom S Assay, Human [CDF: Brainarray ClariomSHuman_Hs_ENTREZG_25.0.0]

manufacture_protocol: This is identical to GPL33245 but a custom CDF environment was used to extract data [Brainarray Version 25, ClariomSHuman_Hs_ENTREZG]. CDF and other files can be downloaded at: (see web link below)."


title: Illumina NovaSeq 6000 (Anopheles dirus)

status: Public on Jul 17 2024

organism: Anopheles dirus


title: MGISEQ-2000RS (Ovis aries)

organism: Ovis aries


title: SBD_Mouse_2_codeset (94 genes)

status: Public on Jul 18 2024

city: San Francisco

first: Cristal

last: Yee

address: 35 Medical Center Way, 923A

department: Orthopaedic Surgery Department

institute: UNIVERSITY OF CALIFORNIA, SAN FRANCISCO

organism: Mus musculus


title: Illumina NextSeq 500 (Rhodanobacter sp.)

organism: Rhodanobacter sp.


title: Nanostring nCounter Mouse FLEX

city: Paris

first: Jennifer

last: Wong

address: 12 rue lhomond

institute: Institue Curie

manufacture_protocol: see manufacturer's website


title: Illumina NextSeq 500 (Acidovorax sp.; Rhodanobacter sp.)

organism:
Acidovorax sp.
Rhodanobacter sp.


title: Illumina NextSeq 500 (Acidovorax sp.)

organism: Acidovorax sp.


title: [MTA-1_0] Affymetrix Mouse Transcriptome Array 1.0 [CDF: Brainarray mta10_Mm_ENSG_20.0.0]

relation: Alternative to: GPL20258 (Affymetrix Transcript (gene) CDF Version)


title: Illumina NovaSeq 6000 (Lupinus angustifolius)

organism: Lupinus angustifolius


title: Illumina NovaSeq 6000 (Campylobacter jejuni subsp. jejuni)

organism: Campylobacter jejuni subsp. jejuni


title: NextSeq 550 (Homo sapiens; synthetic construct)

organism:
Homo sapiens
synthetic construct


title: HiSeq X Ten (Hordeum vulgare)

status: Public on Jul 16 2024

organism: Hordeum vulgare


title: NextSeq 1000 (Homo sapiens; synthetic construct)


title: Nanostring Human nCounter DCIS custom codeset

city: Houston

first: Justin

state: TX

address: 1155 Pressler St

institute: MD Anderson Cancer Center

description:
A custom codeset consisting of 53 genes-of-interest plus 5 housekeeping genes commonly identified from public available DCIS gene expression datasets and correlated with recurrence events using Kessler's breast cancer dataset
NanoString nCounter

manufacture_protocol: See manufacturer's web site


title: PromethION (Drosophila melanogaster)

organism: Drosophila melanogaster


title: NanoString nCounter Mouse+HBV viral biosynthesis and liver pathology 90 1.0

city: Chicago

first: Mark

last: Maienschein-Cline

state: IL

address: 900 S Ashland Ave, Rm 1058, M/C 937

department: Research Resources Center

institute: University of Illinois at Chicago

organism:
Mus musculus
Hepatitis B virus

manufacture_protocol: Custom built Nanostring probe set designed specifically to look at HBV RNA and genes relevant to viral biosynthesis and liver pathology. See manufacturer's website for more details (http://www.nanostring.com).


title: Illumina NovaSeq 6000 (Fusarium sp.; Sanghuangporus vaninii)

organism:
Fusarium sp.
Sanghuangporus vaninii


title: Illumina MiSeq (Yersinia pseudotuberculosis YPIII)

organism: Yersinia pseudotuberculosis YPIII


title: Illumina NovaSeq 6000 (Laodelphax striatellus)

status: Public on Jul 15 2024

organism: Laodelphax striatellus


title: NextSeq 1000 (Klebsiella pneumoniae)

organism: Klebsiella pneumoniae


title: Illumina NovaSeq X (Hermetia illucens)

status: Public on Jul 14 2024

organism: Hermetia illucens


title: Illumina NovaSeq 6000 (Sanghuangporus vaninii)

organism: Sanghuangporus vaninii


title: NextSeq 550 (Legionella longbeachae NSW150)

organism: Legionella longbeachae NSW150


title: Phalanx Human miRNA OneArray v7.2 [HmiOAv7.2]

status: Public on Jul 13 2024

city: Taipei

first: Lie-Fen

last: Shyur

address: No. 128, Sec. 2, Academia Road

country: Taiwan

institute: Academia Sinica

organism: Homo sapiens

manufacture_protocol: See http://www.phalanxbiotech.com/


title: PacBio RS (Mus musculus)

organism: Mus musculus


title: DNBSEQ-T7 (Escherichia coli)

status: Public on Jul 12 2024

organism: Escherichia coli


title: Illumina NovaSeq 6000 (Cereibacter sphaeroides 2.4.1)

status: Public on Jul 10 2024

organism: Cereibacter sphaeroides 2.4.1


title: Illumina NextSeq 500 (Nocardia terpenica)

organism: Nocardia terpenica


title: Qiagen Human Primary Cilia RT2 Profiler PCR Array

status: Public on Jul 11 2024

city: Edinburgh

first: Stuart

last: Forbes

address: 5 Little France Drive

department: Centre for Regenerative Medicine

country: United Kingdom

institute: The University of Edinburgh

technology: RT-PCR

description:
PCR assay
Note: see under 'Primary Cilia' at https://geneglobe.qiagen.com/us/product-groups/rt2-profiler-pcr-arrays


title: Illumina NextSeq 500 (Streptococcus dysgalactiae subsp. equisimilis)


title: Illumina NovaSeq 6000 (Lactobacillus johnsonii)

status: Public on Jul 09 2024

organism: Lactobacillus johnsonii


title: Illumina NovaSeq X (Danio rerio)

organism: Danio rerio


title: Illumina HiSeq 3000 (Bombus impatiens)

organism: Bombus impatiens


title: MinION (Escherichia coli str. K-12 substr. MG1655)

status: Public on Jul 05 2024


title: Illumina NovaSeq 6000 (Python bivittatus)

organism: Python bivittatus


title: PromethION (Toxoplasma gondii)

organism: Toxoplasma gondii


title: NextSeq 550 (Nematostella vectensis)

organism: Nematostella vectensis


title: Sequel IIe (Homo sapiens)


title: Illumina NovaSeq 6000 (Auricularia auricula-judae)

organism: Auricularia auricula-judae


title: Illumina NovaSeq X (Ictalurus punctatus)

status: Public on Jul 02 2024

organism: Ictalurus punctatus


title: Nanostring RNA flow panel

city: Boston

first: Brendan

middle: Michael

last: Smalec

state: MA

address: 77 Avenue Louis Pasteur, Rm 356

department: Genetics

institute: Harvard Medical School


title: Illumina NovaSeq X Plus (Astyanax mexicanus)

status: Public on Jul 08 2024

organism: Astyanax mexicanus


title: DNBSEQ-T7 (Triticum aestivum)

organism: Triticum aestivum


title: Illumina NovaSeq 6000 (Prunus incisa)

status: Public on Jul 07 2024

organism: Prunus incisa


title: Illumina NovaSeq 6000 (Plasmodium knowlesi)

organism: Plasmodium knowlesi


title: Illumina HiSeq 1000 (Pseudomonas aeruginosa PAO1)

organism: Pseudomonas aeruginosa PAO1


title: Illumina NovaSeq 6000 (Trachemys scripta elegans)

status: Public on Jul 01 2024

organism: Trachemys scripta elegans


title: Illumina NovaSeq 6000 (Capsella grandiflora x Capsella rubella)

organism: Capsella grandiflora x Capsella rubella


title: Ion Torrent S5 (synthetic construct)

organism: synthetic construct


title: NextSeq 2000 (Streptococcus sanguinis)

organism: Streptococcus sanguinis


title: Illumina NextSeq 500 (Leptospira interrogans serovar Manilae)

organism: Leptospira interrogans serovar Manilae


title: [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [Entrez 22.0.0]

city: Riyadh

first: Abderrezak

last: Bouchama

address: Ahmad Ibn Hanbal Street, Ar Rimayah

department: Experimental Medicine

country: Saudi Arabia

institute: KAIMRC

organism: Homo sapiens

description: HG-U 133 Plus 2.0 arrays based on Entrez genes, which remaps every probe in the array, re-aligning to the sequences of the latest genome assembly. Specifically, we used three libraries of version 22, namely HG-U 133 Plus 2.0 Entrez gcdf, HG-U 133 Plus 2.0 Entrez gprobe, and HG-U 133 Plus 2.0 Entrez gdb (2) from http://mbni.org/customcdf/22.0.0.

manufacture_protocol: see manufacturer's web site


title: Illumina NovaSeq X Plus (synthetic construct)


title: nCounter Custom Panel

city: Barcelona

first: Lara

last: Nonell

address: C/ NATZARET, 115-117

department: VHIOinformatics

country: Spain

institute: Vall d'Hebron Institute of Oncology (VHIO)


title: Illumina HiSeq 2500 (Phoxinus septimaniae)

organism: Phoxinus septimaniae


title: Illumina HiSeq 2500 (Cnaphalocrocis medinalis)

organism: Cnaphalocrocis medinalis


title: Illumina NovaSeq X (Mesocricetus auratus)

status: Public on Jul 04 2024

organism: Mesocricetus auratus


title: Illumina NovaSeq X Plus (Pseudomonas aeruginosa PAO1)

status: Public on Jul 03 2024


title: Illumina NovaSeq X Plus (Escherichia coli)

organism: Escherichia coli


title: GeoMx Human Whole Transcriptome Atlas [do not use this platform, see NOTE below]

status: Public on Apr 25 2022

city: London

first: Rober

last: Abdo

state: ON

address: 1151 Richmond St

department: Pathology

country: Canada

institute: The University of Western Ontario

description:
GeoMx Digital Spatial Profiler

*** IMPORTANT NOTE ***:
For NanoString GeoMx Digital Spatial Profiling studies with raw data in FASTQ format, please submit your study using GEO's high throughput sequence data submission instructions at: https://www.ncbi.nlm.nih.gov/geo/info/seq.html


title: [Clariom_D_Human] Affymetrix Human Clariom D Assay [GC_Miami_CD_Brain_CDF_cv_0.3_i_8_Grch38_gencode43]

city: Stirling

first: James

last: Timmons

address: Bridge of Allan

institute: Augur Precision Medicine LTD

description: GC_Miami_CD_Brain_CDF_cv_0.3_i_8_Grch38_gencode43_transcript,binary

manufacture_protocol: See manufacturers website


title: NanoString nCounter Mouse AD panel v1.0

city: Baltimore

first: Supriyo

last: De

state: Maryland

address: 251 Bayview Blvd

department: Laboratory of Genetics and Genomics

institute: NIA-IRP, NIH

organism: Mus musculus

description:
The NanoString technology uses fluorescent barcodes bound to nucleotide probes 100 nucleotides in length that are complementary to target mRNA molecules.
NS_Mm_AD30_v1.1


title: [MTA-1_0] Affymetrix Mouse Transcriptome Array 1.0 [GC_Murine_ClariomD_cv_0.25_i_14_GRCm39_gencode_m32 CDF version]


title: Illumina HiSeq 3000 (Equus caballus)

organism: Equus caballus


title: NanoString nCounter Mouse Metabolic Pathways Panel

description:
The NanoString technology uses fluorescent barcodes bound to nucleotide probes 100 nucleotides in length that are complementary to target mRNA molecules.
NS_Mm_Metabolism_v1.0