title: Illumina NovaSeq X Plus (Acinetobacter baumannii)

status: Public on Aug 29 2024

last: GEO

country: USA

organism: Acinetobacter baumannii

technology: high-throughput sequencing

distribution: virtual


title: HiSeq X Ten (Acanthamoeba castellanii)

status: Public on Aug 30 2024

organism: Acanthamoeba castellanii


title: Illumina HiSeq 4000 (Acetivibrio thermocellus DSM 1313)

organism: Acetivibrio thermocellus DSM 1313


title: Illumina HiSeq 2500 (Strongylocentrotus droebachiensis)

organism: Strongylocentrotus droebachiensis


title: DNBSEQ-G400 (Lipomyces starkeyi NRRL Y-11557)

organism: Lipomyces starkeyi NRRL Y-11557


title: Sciencell Genequery Neural Transmission and Membrane Trafficking qPCR Array

city: Sioux Falls

first: Paola

middle: Drapkin

last: Vermeer

state: SD

address: 2301 East 60th street north

department: Cancer Biology and Immunotherapies Group

institute: Sanford Research

organism: Mus

technology: RT-PCR

description: qPCR assay

distribution: custom-commercial


title: Illumina HiSeq 2000 (Magnolia obovata)

status: Public on Aug 28 2024

organism: Magnolia obovata


title: Illumina NovaSeq 6000 (Luffa aegyptiaca)

organism: Luffa aegyptiaca


title: Illumina NovaSeq 6000 (Fundulus heteroclitus)

organism: Fundulus heteroclitus


title: Illumina NovaSeq X (Zea mays subsp. mays)

organism: Zea mays subsp. mays


title: Illumina HiSeq 2000 (Aconitum japonicum)

organism: Aconitum japonicum


title: Illumina NovaSeq X Plus (Gallus gallus)

organism: Gallus gallus


title: NextSeq 550 (Mycolicibacterium smegmatis)

organism: Mycolicibacterium smegmatis


title: NextSeq 1000 (Vibrio cholerae C6706)

status: Public on Aug 27 2024

organism: Vibrio cholerae C6706


title: Illumina NovaSeq 6000 (Carollia perspicillata)

organism: Carollia perspicillata


title: Mouse 80 Antigens Protein array

city: Dallas

first: Chengsong

last: Zhu

state: TX

address: 5323 Harry Hines Blvd

department: Immunology

institute: UT Southwestern Medical Center

technology: antibody

distribution: non-commercial

manufacturer: Microarray & Immune Phenotyping Core Facility of University of Texas Southwestern Medical Center


title: NextSeq 1000 (Trypanosoma brucei)

status: Public on Aug 26 2024

organism: Trypanosoma brucei


title: Illumina NovaSeq 6000 (Yellow fever virus)

status: Public on Aug 23 2024

organism: Yellow fever virus


title: Geochip 5.0

city: Fuzhou

first: Zhenyue

last: Lin

address: Minjiang university

country: China

institute: Minjiang university

organism:
Bacteria
Archaea
Eukaryota
Viruses

technology: spotted oligonucleotide

manufacture_protocol: see manufacturer's web site


title: Illumina NovaSeq X Plus (Macaca fascicularis)

organism: Macaca fascicularis


title: NextSeq 1000 (Caulobacter vibrioides CB15)

organism: Caulobacter vibrioides CB15


title: Illumina NovaSeq X Plus (Spinacia oleracea)

status: Public on Aug 22 2024

organism: Spinacia oleracea


title: HiSeq X Ten (Pseudomonas putida)

organism: Pseudomonas putida


title: Illumina NovaSeq 6000 (Delphinapterus leucas)

organism: Delphinapterus leucas


title: Illumina NovaSeq 6000 (Homo sapiens; Macaca fascicularis)

organism:
Macaca fascicularis
Homo sapiens


title: Illumina NovaSeq X Plus (Marchantia polymorpha)

organism: Marchantia polymorpha


title: Illumina NovaSeq 6000 (Chara braunii)

status: Public on Aug 20 2024

organism: Chara braunii


title: DNBSEQ-G50 (Macaca fascicularis)


title: Qiagen RT² Profiler PCR Array for Human Cytokines & Chemokines

city: Geesthacht

first: Krathika

last: Bhat

address: Max-Planck-Str. 1

country: Germany

institute: Helmholtz Zentrum Hereon

organism: Homo sapiens

description:
qPCR array
RT² Profiler™ PCR Array for Human Cytokines & Chemokines

manufacture_protocol: see manufacturer's website


title: IFC UNAM Mouse 22K v1

city: Guadalajara

first: Ana

middle: Soledad

last: Sandoval-Rodriguez

state: Jalisco

address: Sierra Mojada 950

department: Molecular Biology and Genomics

country: Mexico

institute: University of Guadalajara

organism: Mus musculus

manufacturer: Unidad de Microarreglos, IFC UNAM, México

manufacture_protocol:
1. The Mouse 65-mer oligo library from Sigma-Genosys oligo sets was used. It contains 22,000 gene specific oligonucleotide probes representing the 70% of mouse genome.
2. Oligo library was resuspended to 50µM in Micro Spotting solution (ArrayIt Brand Products.).
3. SuperAmine coated slides 25x75 mm (TeleChem International INC) were printed using SDDC robot (Virtek) with 48 pins (Y= 12 meta rows; X= 4 meta columns; Y1= 22 rows; X1= 22 columns; with a dot spacing of Y1= 190 micron and X1= 190 microns). Fixed at 80°C for 4 hours.
4. For pre-hybridization the slides were re-hydrated with water vapor at 60°C, and fixed with two cycles of UV light (1200J). After boiling for two minutes at 92°C, slides were washed with 95% ethanol for one minute and prehybridzed in 5X SSC, 0.1% SDS and 1% BSA for one hour at 42°C.


title: NextSeq 550 (Pseudomonas putida)


title: Illumina NovaSeq X Plus (Porphyromonas gingivalis)

organism: Porphyromonas gingivalis


title: NextSeq 550 (Triticum aestivum)

status: Public on Aug 19 2024

organism: Triticum aestivum


title: Illumina NovaSeq 6000 (Sesbania grandiflora)

organism: Sesbania grandiflora


title: Illumina NovaSeq X (Trachinotus blochii)

status: Public on Aug 21 2024

organism: Trachinotus blochii


title: Illumina NovaSeq X (Gallus gallus)

status: Public on Aug 17 2024

organism: Gallus gallus


title: HiSeq X Five (Drosophila melanogaster)

organism: Drosophila melanogaster


title: NextSeq 1000 (Cloning vector pUC19)

organism: Cloning vector pUC19


title: Illumina MiSeq (Salmonella enterica subsp. enterica serovar Typhi)


title: Nanostring custom nCounter platform

city: Toronto

first: Gabor

last: Kovacs

state: Ontario

address: 60 Leonard Ave, Room 6KD414

country: Canada

institute: University of Toronto

technology: other


title: Agilent-084825 Bos taurus_ensembl_201704 Microarray (Feature number version)

status: Public on Aug 18 2024

city: Miyazaki

first: Shoichi

last: Wakitani

address: 1-1 Gakuenkibanadai-nishi

department: Faculty of Agriculture

country: Japan

institute: University of Miyazaki

organism: Bos taurus

technology: in situ oligonucleotide

description:
Bos taurus GE Array; bosTau6:UMD_3.1:Nov2009

Arrays of this design have barcodes that begin with 16084825 or 2584825.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Target Sequence Source:  ensembl88 cdna and ncRNA transcripts
Gene expression array
Product Name :G4858A#84825 (Agilent)

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Agilent-085739 50007725_QG 085738 Quercus glauca

status: Public on Aug 16 2024

city: Fukuoka

first: Akiko

last: Satake

address: Motooka 744

institute: Kyushu University

organism: Quercus glauca

description:
Arrays of this design have barcodes that begin with 16085739 or 2585739.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-085738 50007725_LE 085737 Lithocarpus edulis

organism: Lithocarpus edulis

description:
Arrays of this design have barcodes that begin with 16085738 or 2585738.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NovaSeq X Plus (Taeniopygia guttata)

status: Public on Aug 15 2024

organism: Taeniopygia guttata


title: Gonococcal antigens microarray

city: Manchester

first: Fidel

last: Ramirez Bencomo

state: England

address: Michael Smith Building

department: FBMH/SBS/EIGen

country: United Kingdom

institute: The University of Manchester

organism: Neisseria gonorrhoeae

technology: spotted peptide or protein

manufacture_protocol: Purified recombinant proteins were diluted to a final concentration of 0.5 mg/ml combined with JetStar printing buffer (in a 1:1 ratio), which has been optimised to produce high-quality features. Each drop dispensed by an Arrayjet microarrayer is 100pL. A deposition volume of 400pL (4 drops per spot) was printed onto a 16-pad ONCYTE SuperNOVA (Grace Bio-Labs) nitrocellulose slide ) using the non-contact printer Arrayjet Marathon (Arrayjet, Edinburgh, UK). The process was carried out at around 55% relative humidity (RH) and 10°C. The temperature for printing was changed from 18°C to 10°C to maintain the stability of the samples. Each protein was printed in 5 replicates on each microarray. The printed slides were incubated in the arrayer at 10°C overnight and stored at 4°C.  The samples were combined with JetStar™ printing buffer (in a 1:1 ratio) which has been optimised to produce high quality features.  University of Manchester provided all relevant information in relation to storage and handling of the samples including materials safety data sheet (MSDS) if applicable.


title: Illumina NovaSeq 6000 (Wahlenbergia ceracea)

organism: Wahlenbergia ceracea


title: Illumina NextSeq 500 (marine plankton environmental sample)

status: Public on Aug 14 2024

organism: marine plankton environmental sample


title: nCounter Human v3 miRNA Expression Assay

city: Barretos

first: Rhafaela

middle: Lima

last: Causin

state: SP

address: Antenor Duarte Villela, 1331

department: Molecular Oncology Research Center

country: Brazil

institute: Barretos Cancer Hospital


title: Nanostring nCounter Autoimmune Profiling Panel (NS_HS_AI_PRO_V1.1)

status: Public on Aug 13 2024

city: Cottingham

first: Simon

last: Hart

state: East Yorkshire

address: Castle Hill Hospital

department: Respiratory Research Group

institute: Hull York Medical School/ University of Hull

manufacture_protocol: See NanoString website


title: Illumina NovaSeq X (Lachancea fermentati)

status: Public on Aug 07 2024

organism: Lachancea fermentati


title: NextSeq 2000 (Tachycineta bicolor)

status: Public on Aug 11 2024

organism: Tachycineta bicolor


title: Illumina NovaSeq 6000 (Sinapis alba)

status: Public on Aug 09 2024

organism: Sinapis alba


title: Illumina NovaSeq X (Lachancea waltii)

organism: Lachancea waltii


title: NextSeq 1000 (Xenopus laevis)

organism: Xenopus laevis


title: Illumina NextSeq 500 (Vibrio cholerae C6706)

organism: Vibrio cholerae C6706


title: Illumina NovaSeq 6000 (Tenrec ecaudatus)

organism: Tenrec ecaudatus


title: Illumina HiSeq 2000 (Malus spectabilis)

status: Public on Aug 06 2024

organism: Malus spectabilis


title: NanoString nCounter Banff Human Organ Transplant (B-HOT) Panel

status: Public on Aug 08 2024

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Homo sapiens

description: profiles 770 genes across 37 pathways

manufacture_protocol: NanoString Technologies, Nanostring nCounter System (Nanostring Technologies, Seattle, WA)


title: Illumina NovaSeq 6000 (soil metagenome)

organism: soil metagenome


title: Illumina NovaSeq 6000 (Amycolatopsis balhimycina)

organism: Amycolatopsis balhimycina


title: Illumina HiSeq 4000 (Drosophila kikkawai)

organism: Drosophila kikkawai


title: Illumina HiSeq 2500 (Drosophila ficusphila)

organism: Drosophila ficusphila


title: NextSeq 2000 (Lachancea fermentati)


title: Illumina HiSeq 4000 (Drosophila ananassae)

organism: Drosophila ananassae


title: Illumina HiSeq 4000 (Drosophila biarmipes)

organism: Drosophila biarmipes


title: Illumina HiSeq 2500 (Drosophila elegans)

organism: Drosophila elegans


title: Illumina HiSeq 2500 (Drosophila bipectinata)

organism: Drosophila bipectinata


title: NextSeq 2000 (Lachancea waltii)


title: Illumina HiSeq 2500 (Drosophila biarmipes)


title: Illumina HiSeq 2500 (Drosophila takahashii)

organism: Drosophila takahashii


title: Illumina HiSeq 4000 (Drosophila bipectinata)


title: Illumina HiSeq 2500 (Drosophila kikkawai)


title: Illumina HiSeq 3000 (Drosophila elegans)


title: Illumina NovaSeq X (Drosophila melanogaster)

status: Public on Aug 12 2024

organism: Drosophila melanogaster


title: Illumina HiSeq 4000 (Drosophila yakuba)

organism: Drosophila yakuba


title: Illumina HiSeq 4000 (Drosophila elegans)


title: Illumina HiSeq 3000 (Drosophila yakuba)


title: Illumina HiSeq 3000 (Drosophila bipectinata)


title: Illumina HiSeq 4000 (Drosophila takahashii)


title: Illumina HiSeq 3000 (Drosophila ananassae)


title: Illumina HiSeq 4000 (Drosophila ficusphila)


title: Illumina HiSeq 3000 (Drosophila simulans)

organism: Drosophila simulans


title: Illumina HiSeq 3000 (Drosophila ficusphila)


title: Illumina HiSeq 3000 (Drosophila kikkawai)


title: Illumina HiSeq 3000 (Drosophila takahashii)


title: Illumina HiSeq 3000 (Drosophila biarmipes)


title: Illumina NovaSeq 6000 (Hymenopellis raphanipes)

status: Public on Aug 04 2024

organism: Hymenopellis raphanipes


title: Illumina HiSeq 2500 (Homo sapiens; Human respirovirus 3)

status: Public on Aug 05 2024

organism:
Homo sapiens
Human respirovirus 3


title: Illumina HiSeq 4000 (Drosophila eugracilis)

organism: Drosophila eugracilis


title: Illumina HiSeq 3000 (Drosophila eugracilis)


title: NextSeq 550 (Saccharomyces cerevisiae BY4741)

status: Public on Aug 02 2024

organism: Saccharomyces cerevisiae BY4741


title: Illumina NovaSeq X Plus (Orbilia oligospora)

organism: Orbilia oligospora


title: Illumina HiSeq 3000 (Anolis carolinensis)

status: Public on Aug 01 2024

organism: Anolis carolinensis


title: HiSeq X Ten (Morone saxatilis)

organism: Morone saxatilis


title: MinION (Phodopus sungorus)

organism: Phodopus sungorus


title: GridION (Phodopus sungorus)


title: Illumina NovaSeq 6000 (Melopsittacus undulatus)

organism: Melopsittacus undulatus


title: Illumina NovaSeq 6000 (Penaeus japonicus)

organism: Penaeus japonicus


title: NanoString GeoMx Human Immuno-oncology Protein Digital Spatial Profiling (DSP) Platform

city: Brisbane

first: Habib

last: Sadeghirad

state: Queensland

address: 37 Kent St, Woolloongabba, 37 Kent St, Woolloongabba

country: Australia

institute: The University of Queensland

organism: Homo sapiens

distribution: commercial

manufacture_protocol: More information is available at nanostring.com


title: Illumina NovaSeq 6000 (Salvelinus fontinalis)

organism: Salvelinus fontinalis


title: Qiagen miRCURY LNA miRNA miRNome PCR Panel

city: Hong Kong

first: Ho Yin Edwin

last: Chan

department: School of Life Sciences

country: Hong Kong

institute: The Chinese University of Hong Kong

description:
PCR assay
Human panel I+II, V5, miRCURY LNA miRNA miRNome PCR Panel


title: NS_Hs_NeuroPath_v1.0+PLS

status: Public on Jul 31 2024

city: San Diego

first: Maria

middle: Cecilia

last: Marcondes

state: CA

address: 3525 John Hopkins Ct. #200

institute: San Diego Biomedical Research Institute

manufacture_protocol: nCounter Analysis System/ nSolver and Rosalind Platforms were used as indicated by the manufacturer.


title: NanoString GeoMx Human Whole Transcriptome Atlas Hs_R_NGS_WTA_v1.0 [do not use this platform, see NOTE below]

status: Public on Jul 30 2024

city: brisbane

first: Arutha

last: Kulasinghe

address: 37 kent st

institute: University of Queensland

description:
GeoMx Digital Spatial Profiler

*** IMPORTANT NOTE ***:
For NanoString GeoMx Digital Spatial Profiling studies with raw data in FASTQ format, please submit your study using GEO's high throughput sequence data submission instructions at: https://www.ncbi.nlm.nih.gov/geo/info/seq.html


title: NanoString GeoMx Human Whole Transcriptome Atlas [do not use this platform, see NOTE below]

status: Public on Sep 26 2023

city: Hefei

first: Cheng

last: Sun

state: Anhui

address: 17, Lujiang Road

department: the First Affiliated Hospital of USTC

institute: University of Science and Technology of China

description:
Human RNA for Illumina Systems.
RNA Probe set that targets 18,000+ transcripts for human protein-coding genes plus ERCC negative controls to profile the whole transcriptome. Excludes uninformative high expressing targets such as ribosomal subunits. Includes RNA probes designed for Illumina NGS readout with the Seq Code library prep.

*** IMPORTANT NOTE ***:
For NanoString GeoMx Digital Spatial Profiling studies with raw data in FASTQ format, please submit your study using GEO's high throughput sequence data submission instructions at: https://www.ncbi.nlm.nih.gov/geo/info/seq.html

manufacture_protocol: See NanoString web site.


title: Mouse Oparray Version 4 (GalFile: Maus_OpArray.gal)

status: Public on Aug 07 2014

city: Regensburg

first: Xin

last: Lu

address: Universitätsstraße 31

institute: University of Regensburg

organism: Mus musculus

manufacture_protocol: See manufacturer website