title: Illumina NovaSeq 6000 (Inocutis levis)

status: Public on Oct 31 2024

last: GEO

country: USA

organism: Inocutis levis

technology: high-throughput sequencing

distribution: virtual


title: Illumina NovaSeq 6000 (Cupriavidus necator H16)

organism: Cupriavidus necator H16


title: DNBSEQ-G50 (Bos taurus)

status: Public on Oct 30 2024

organism: Bos taurus


title: Illumina MiSeq (Harpegnathos saltator)

status: Public on Oct 28 2024

organism: Harpegnathos saltator


title: NextSeq 550 (Drosophila simulans)

status: Public on Oct 29 2024

organism: Drosophila simulans


title: Illumina NovaSeq 6000 (Vigna unguiculata)

organism: Vigna unguiculata


title: Illumina NovaSeq X Plus (Enterococcus faecalis)

organism: Enterococcus faecalis


title: Illumina HiSeq 2500 (Homo sapiens; Mus)

organism:
Homo sapiens
Mus


title: NextSeq 2000 (Clostridioides difficile 630)

organism: Clostridioides difficile 630


title: Illumina NovaSeq X Plus (Petromyzon marinus)

organism: Petromyzon marinus


title: Illumina NovaSeq 6000 (Homo sapiens; Macaca fascicularis; Macaca mulatta; Pongo abelii)

organism:
Macaca fascicularis
Macaca mulatta
Pongo abelii
Homo sapiens


title: NextSeq 1000 (Macaca fascicularis; Macaca mulatta; Pongo abelii)

organism:
Macaca fascicularis
Macaca mulatta
Pongo abelii


title: NextSeq 1000 (Escherichia phage Lambda)

organism: Escherichia phage Lambda


title: NextSeq 550 (Drosophila simulans x Drosophila sechellia)


title: Illumina NovaSeq 6000 (Pseudomonas protegens)

organism: Pseudomonas protegens


title: TaqMan™ OpenArray™ Human Advanced MicroRNA Panel, QuantStudio™ 12K Flex

city: Brescia

first: Stefano

last: Calza

state: Brescia

address: Viale Europa 11

department: DMMT

country: Italy

institute: University of Brescia

organism: Homo sapiens

technology: RT-PCR

description:
qPCR assay
The expression profile of a panel of 754 miRNAs was performed with RT-qPCR carried out on a QuantStudio 12K Flex (Applied Biosystems) using the TaqMan OpenArray miRNA panel.

manufacture_protocol: see manufacturer's website


title: NextSeq 1000 (Homo sapiens; Macaca fascicularis; Macaca mulatta; Pongo abelii)


title: NextSeq 2000 (Galleria mellonella)

organism: Galleria mellonella


title: Illumina NovaSeq 6000 (Neolamprologus brichardi)

organism: Neolamprologus brichardi


title: Illumina NovaSeq 6000 (Shuja horei)

organism: Shuja horei


title: Illumina NovaSeq 6000 (Simochromis diagramma)

organism: Simochromis diagramma


title: Illumina NovaSeq 6000 (Benthochromis horii)

organism: Benthochromis horii


title: Illumina NovaSeq 6000 (Cyphotilapia frontosa)

organism: Cyphotilapia frontosa


title: Illumina NovaSeq 6000 (Bathybates ferox)

organism: Bathybates ferox


title: Illumina NovaSeq 6000 (Haplotaxodon microlepis)

organism: Haplotaxodon microlepis


title: Illumina HiSeq 2500 (Gracilariopsis lemaneiformis)

organism: Gracilariopsis lemaneiformis


title: Illumina NovaSeq 6000 (Triglachromis otostigma)

organism: Triglachromis otostigma


title: Illumina NovaSeq 6000 (Trematocara zebra)

organism: Trematocara zebra


title: Illumina NovaSeq 6000 (Limnotilapia dardennii)

organism: Limnotilapia dardennii


title: Illumina NovaSeq 6000 (Xenotilapia spiloptera)

organism: Xenotilapia spiloptera


title: Illumina NovaSeq 6000 (Boulengerochromis microlepis)

organism: Boulengerochromis microlepis


title: Illumina NovaSeq X Plus (Harpegnathos saltator)

organism: Harpegnathos saltator


title: Illumina NovaSeq 6000 (Perissodus microlepis)

organism: Perissodus microlepis


title: Illumina NovaSeq 6000 (Cyprichromis coloratus)

organism: Cyprichromis coloratus


title: Illumina NovaSeq 6000 (Neolamprologus brevis)

organism: Neolamprologus brevis


title: Illumina NovaSeq 6000 (Julidochromis ornatus)

organism: Julidochromis ornatus


title: Illumina NovaSeq 6000 (Tropheus moorii)

organism: Tropheus moorii


title: Illumina NovaSeq 6000 (Callochromis pleurospilus)

organism: Callochromis pleurospilus


title: Illumina NovaSeq 6000 (Telmatochromis vittatus)

organism: Telmatochromis vittatus


title: Illumina NovaSeq 6000 (Eretmodus cyanostictus)

organism: Eretmodus cyanostictus


title: NextSeq 550 (Drosophila sechellia)

organism: Drosophila sechellia


title: Illumina NovaSeq 6000 (Lepidiolamprologus attenuatus)

organism: Lepidiolamprologus attenuatus


title: Illumina NovaSeq 6000 (Salsola tragus)

status: Public on Oct 25 2024

organism: Salsola tragus


title: Illumina HiSeq 2000 (Yersinia pseudotuberculosis)

organism: Yersinia pseudotuberculosis


title: Illumina NovaSeq 6000 (Tolypocladium ophioglossoides)

status: Public on Oct 24 2024

organism: Tolypocladium ophioglossoides


title: DNBSEQ-G400 (Nostoc sp. PCC 7120 = FACHB-418)

status: Public on Oct 27 2024

organism: Nostoc sp. PCC 7120 = FACHB-418


title: Illumina HiSeq 4000 (Mactra quadrangularis)

organism: Mactra quadrangularis


title: NextSeq 2000 (Hordeum vulgare)

status: Public on Oct 26 2024

organism: Hordeum vulgare


title: NanoString nCounter Elements custom Asthma

status: Public on Oct 23 2024

city: VANCOUVER

first: Daniel

last: He

state: BC

address: 1081 Burrard St Room 166

country: Canada

institute: University Of British Columbia

organism: Homo sapiens

technology: other

description: Multiplex nucleic acid hybridization to measure RNA expression

distribution: custom-commercial

manufacture_protocol: Nanostring


title: NextSeq 2000 (Severe acute respiratory syndrome coronavirus 2)


title: Lewis-Sigler Institute Saccharomyces cerevisiae 10.0K [AY7]

city: Guildford

first: André

middle: P.

last: Gerber

state: Surrey

address: Stag Hill Campus

department: Microbial Sciences

country: United Kingdom

institute: University of Surrey

organism: Saccharomyces cerevisiae

technology: spotted DNA/cDNA

description: no annotation provided

distribution: non-commercial

manufacturer: Lewis-Sigler Institute Microarray Facility

manufacture_protocol: see manufacturer's web site


title: Lewis-Sigler Institute Saccharomyces cerevisiae 9.6K [AY5]

description: Data submitted by Yoav Arava


title: Illumina NovaSeq X Plus (Homo sapiens; Mus musculus)

status: Public on Oct 22 2024

organism:
Homo sapiens
Mus musculus


title: Illumina NovaSeq 6000 (Photorhabdus laumondii subsp. laumondii TTO1)


title: NextSeq 2000 (Nostoc sp. PCC 7120 = FACHB-418)


title: Illumina NovaSeq X Plus (Mucor circinelloides)

status: Public on Oct 21 2024

organism: Mucor circinelloides


title: Illumina NovaSeq X Plus (Zea mays)

organism: Zea mays


title: Illumina NovaSeq 6000 (Solea senegalensis)

status: Public on Oct 17 2024

organism: Solea senegalensis


title: Sequel II (Pan troglodytes)

organism: Pan troglodytes


title: Illumina NovaSeq 6000 (Lepidiolamprologus elongatus)

organism: Lepidiolamprologus elongatus


title: Nimblegen 080303 MacetC2A EXPx4

status: Public on Oct 18 2024

city: Lincoln

first: Nicole

last: Buan

state: NE

address: 1901 Vine St N200 Beadle N200 Beadle

department: Biochemistry

institute: University of Nebraska-Lincoln

organism: Methanosarcina acetivorans C2A

technology: in situ oligonucleotide

description:
cat# A7240-00-01
Expr 4x72K arr Del-Microarrays for Expression
Submitter states that the NDF file for this array was lost.

manufacture_protocol: see website


title: Illumina NovaSeq 6000 (Epinephelus fuscoguttatus)

organism: Epinephelus fuscoguttatus


title: Illumina HiSeq 4000 (Roseovarius tolerans)

status: Public on Oct 16 2024

organism: Roseovarius tolerans


title: Illumina NovaSeq 6000 (Bovidae)

organism: Bovidae


title: Illumina NovaSeq 6000 (Paraspadella gotoi)

status: Public on Oct 15 2024

organism: Paraspadella gotoi


title: NextSeq 550 (Mustela putorius furo)

organism: Mustela putorius furo


title: Illumina NextSeq 500 (Burkholderia thailandensis)

organism: Burkholderia thailandensis


title: Illumina NovaSeq X (Paraspadella gotoi)


title: Illumina NextSeq 500 (Pinus contorta var. latifolia)

organism: Pinus contorta var. latifolia


title: Illumina NextSeq 500 (Pinus banksiana)

organism: Pinus banksiana


title: Illumina HiSeq 1000 (Scatophagus argus)

organism: Scatophagus argus


title: Illumina NovaSeq 6000 (Campeiostachys nutans)

status: Public on Oct 14 2024

organism: Campeiostachys nutans


title: Illumina HiSeq 4000 (Coccidioides posadasii str. Silveira)

organism: Coccidioides posadasii str. Silveira


title: Illumina NovaSeq 6000 (Fusarium oxysporum)

organism: Fusarium oxysporum


title: NextSeq 2000 (Coccidioides posadasii str. Silveira)


title: Illumina NovaSeq 6000 (Coccidioides posadasii str. Silveira)


title: Illumina HiSeq 2500 (Trichomonas vaginalis)

organism: Trichomonas vaginalis


title: NanoString nCounter Mouse Metabolic Pathways Gene Expression Panel [NS_Mm_Metabolism_v1.0]

status: Public on Oct 11 2024

city: Atlanta

first: Jennifer

middle: Q.

last: Kwong

state: GA

address: 1750 Haygood Dr. NE N423

institute: Emory University School of Medicine

organism: Mus musculus


title: NanoString Mouse nCounter Panel (NS_Mm_Glial_v1.0) [Gene name version]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: Illumina NovaSeq X Plus (Enterococcus faecalis OG1RF)

organism: Enterococcus faecalis OG1RF


title: Illumina HiSeq 2500 (Sporisorium scitamineum)

organism: Sporisorium scitamineum


title: HiSeq X Five (Hakea laurina)

status: Public on Oct 10 2024

organism: Hakea laurina


title: Illumina NovaSeq 6000 (Staphylococcus aureus; Staphylococcus epidermidis)

organism:
Staphylococcus aureus
Staphylococcus epidermidis


title: Illumina NovaSeq 6000 (Mycobacterium tuberculosis H37Ra)

organism: Mycobacterium tuberculosis H37Ra


title: Illumina NovaSeq 6000 (Anguilla japonica)

status: Public on Oct 09 2024

organism: Anguilla japonica


title: Herbivorax saccincola A7 biomass degradation-related genes using Bio-Rad CFX96 Touch Real-Time PCR Detection System

city: Tsukuba

first: Sirilak

last: Baramee

state: Ibaraki

address: 1-1 Ohwashi

country: Japan

institute: Japan International Research Center for Agricultural Sciences

organism: Acetivibrio saccincola

description: PCR assay


title: Illumina NovaSeq 6000 (Inovirus M13)

status: Public on Oct 08 2024

organism: Inovirus M13


title: Illumina HiSeq 4000 (Lumnitzera littorea)

status: Public on Oct 13 2024

organism: Lumnitzera littorea


title: NextSeq 550 (Chlamydia trachomatis)

status: Public on Oct 04 2024

organism: Chlamydia trachomatis


title: Illumina NovaSeq 6000 (Coregonus baicalensis)

status: Public on Oct 05 2024

organism: Coregonus baicalensis


title: Illumina NovaSeq 6000 (Syngnathus scovelli)

organism: Syngnathus scovelli


title: Illumina NovaSeq 6000 (Streptococcus salivarius)

organism: Streptococcus salivarius


title: Agilent-025384 Xq28_2009 [Feature Number version]

organism: Homo sapiens

description:
Arrays of this design have barcodes that begin with 16025384 or 2525384.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

distribution: commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina NovaSeq 6000 (Hyphomicrobium denitrificans)

status: Public on Oct 07 2024

organism: Hyphomicrobium denitrificans


title: Illumina HiSeq 2000 (Ophiomastix wendtii)

organism: Ophiomastix wendtii


title: BGISEQ-500 (Lactuca sativa)

organism: Lactuca sativa


title: Illumina NovaSeq 6000 (Sphingomonas sp. DBB INV C78)

organism: Sphingomonas sp. DBB INV C78


title: Illumina NovaSeq X (Helicobacter pylori PMSS1)

status: Public on Oct 03 2024

organism: Helicobacter pylori PMSS1


title: NextSeq 2000 (Legionella pneumophila)

organism: Legionella pneumophila


title: Illumina NovaSeq X (Fraxinus excelsior)

status: Public on Oct 02 2024

organism: Fraxinus excelsior


title: Illumina NovaSeq 6000 (Haloferax mediterranei ATCC 33500)

organism: Haloferax mediterranei ATCC 33500


title: DNBSEQ-T7 (Curvularia clavata)

organism: Curvularia clavata


title: Hertzog Human Interferon-Stimulated Gene PCR Assay Panel

status: Public on Oct 01 2024

city: Melbourne

first: Jamie

last: Gearing

address: 27-31 Wright St

country: Australia

institute: Hudson Institute of Medical Research

description: PCR assay


title: NextSeq 2000 (Solanum lycopersicum)

organism: Solanum lycopersicum


title: HiSeq X Ten (Homo sapiens; Human betaherpesvirus 5)

organism:
Homo sapiens
Human betaherpesvirus 5


title: MWG Escherichia coli BL21(DE3) Array

city: Cuernavaca

first: Alfredo

last: Martínez

state: Morelos

address: Av. Universidad 2001, Col. Chamilpa

department: Departamento de Ingeniería Celular y Biocatálisis

country: Mexico

institute: Instituto de Biotecnología, Universidad Nacional Autónoma de México

organism: Escherichia coli BL21(DE3)

technology: spotted oligonucleotide


title: Nanostring nCounter PanCancer Immune Profiling Panel

city: Parkville

first: Alesha

middle: A

last: Thai

state: VIC

address: Department of Medical Oncology, 305 Grattan St

institute: Peter MacCallum Cancer Centre

manufacture_protocol: Three specifically-designed unique oligonucleotides constitute the heart of each nCounter probe. Based on the target gene sequence, two 50mer DNA oligos are designed to complement opposite ends of a unique 100 bp stretch of the gene. Attached immediately adjacent to one 50mer oligo is an additional DNA oligo sequence, known as the backbone, that anneals to a complementary RNA molecular barcode. Individual segments of the RNA oligo are labeled with specific fluorophores arranged in various specific linear orders to create a unique code for each gene of interest (Geiss). This DNA-RNA hybrid molecule constitutes the reporter half of the probe pair. The second half of the two-part probe consists of the second gene-specific sequence taken from the adjacent end of the 100 bp target sequence, forming the capture probe (Geiss).    Hybridization of the reporter and capture probes to the target RNA creates a tripartite structure identified by the specific fluorescent signal of the reporter probe, which can also be used for quantifying each transcript.


title: Illumina NovaSeq X Plus (Pseudomonas aeruginosa)

organism: Pseudomonas aeruginosa


title: Illumina NextSeq 500 (Leptospira interrogans)

organism: Leptospira interrogans


title: NextSeq 2000 (Leptospira interrogans)


title: UGA - BMB - Adams Lab, P. furiosus, 2192 ORFs x 3 Copies, Version 1

status: Public on May 25 2007

city: Athens

first: Michael

middle: W. W.

last: Adams

address: 120 East Green St.

department: Molecular Biology and Biochemistry

institute: University of Georgia

organism: Pyrococcus furiosus DSM 3638

description: Glass slide, see protocol above.

first: Gerrit

middle: J

last: Schut

first: Scott

middle: D

last: Hamilton-Brehm

first: Farris

middle: L

last: Poole

middle: W

manufacture_protocol:
Each of the known 2192 ORFs in P. furiosus were amplified individually by PCR. Primers were selected to produce full-length PCR products. In case of large ORFs >2 kb PCR primers were designed to yield a PCR product around 1 kb. Expected PCR products with high homology to more than one locus were replace by a 50-mer specific oligo. Oligos were purchased from MWG Biotech (High Point, NC) in a 96-well format. Aliquots of the primers were used in 96-well format PCR reactions. PCR products were verified by gel electrophoreses. PCR products were subsequently purified using a 96-well PCR purification kit (Stratagene). Eluted DNA was mixed with 50% DMSO to minimize evaporation during arraying.
The probes (PCR products) were be spotted onto amino silane coated glass slides (Asper or PerkinElmer) and cross-linked to the slides by UV irradiation. The microarrays were made in house at the UGA using a robotic slide printer (Omnigrid, GeneMachines) with Stealth SMP3 pins (Telechem). Arrays were spotted in triplicate in 8 subarrays (4 x 2), 19 x 19 spots with a 225 um spacing.


title: Illumina HiSeq 4000 (Haloferax mediterranei ATCC 33500)


title: Illumina NovaSeq 6000 (Petrochromis orthognathus)

status: Public on Oct 28 2024

organism: Petrochromis orthognathus


title: Illumina NovaSeq X Plus (Oryzias latipes)

organism: Oryzias latipes