title: Illumina NovaSeq X Plus (Mus musculus; Mus musculus castaneus)

status: Public on Jan 31 2025

last: GEO

country: USA

organism:
Mus musculus
Mus musculus castaneus

technology: high-throughput sequencing

distribution: virtual


title: Illumina NovaSeq X Plus (Canis lupus familiaris)

status: Public on Jan 30 2025

organism: Canis lupus familiaris


title: Illumina NovaSeq 6000 (Pseudomonas lurida)

organism: Pseudomonas lurida


title: Illumina NextSeq 500 (Amaranthus hypochondriacus)

status: Public on Jan 29 2025

organism: Amaranthus hypochondriacus


title: Mouse brain MERFISH

city: St. Louis

first: Mati

middle: Tesfaye

last: Nemera

state: Missouri

address: 660 S Euclid Ave

department: Neuroscience

institute: Washington University in St. Louis School of Medicine

organism: synthetic construct

technology: other

distribution: custom-commercial

manufacture_protocol: MERFISH probe library was constructed through Vizgen, according to their pipeline.


title: Illumina NextSeq 500 (Amaranthus hybridus)

organism: Amaranthus hybridus


title: Illumina NovaSeq 6000 (Glossina morsitans morsitans)

organism: Glossina morsitans morsitans


title: Spatial Genomics GenePS: Human

status: Public on Jan 28 2025

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Homo sapiens

distribution: commercial


title: HiSeq X Ten (Erwinia amylovora)

organism: Erwinia amylovora


title: Illumina NovaSeq 6000 (Solanum lycopersicoides)

organism: Solanum lycopersicoides


title: Illumina NovaSeq 6000 (Solanum pimpinellifolium)

organism: Solanum pimpinellifolium


title: Illumina NovaSeq 6000 (Solanum chilense)

organism: Solanum chilense


title: Illumina MiSeq (bioreactor sludge metagenome)

organism: bioreactor sludge metagenome


title: Illumina NovaSeq 6000 (Solanum lycopersicum var. cerasiforme)

organism: Solanum lycopersicum var. cerasiforme


title: Illumina NovaSeq 6000 (Atta sexdens)

status: Public on Jan 27 2025

organism: Atta sexdens


title: Illumina NovaSeq 6000 (Pseudotaxus chienii)

organism: Pseudotaxus chienii


title: Illumina NovaSeq 6000 (Angelica pubescens)

organism: Angelica pubescens


title: Illumina NovaSeq 6000 (Adoxophyes honmai)

status: Public on Jan 26 2025

organism: Adoxophyes honmai


title: Illumina NextSeq 500 (Sus scrofa domesticus)

organism: Sus scrofa domesticus


title: Illumina NextSeq 500 (Mycosarcoma maydis)

organism: Mycosarcoma maydis


title: NextSeq 550 (Coprinopsis cinerea AmutBmut pab1-1)

status: Public on Jan 23 2025

organism: Coprinopsis cinerea AmutBmut pab1-1


title: DNBSEQ-T7 (Trichophyton mentagrophytes)

status: Public on Jan 24 2025

organism: Trichophyton mentagrophytes


title: MinION (Hepatitis delta virus)

organism: Hepatitis delta virus


title: Illumina NovaSeq 6000 (Cnephaeus serotinus)

organism: Cnephaeus serotinus


title: Illumina HiSeq 2000 (Candidozyma auris)

organism: Candidozyma auris


title: Illumina NovaSeq 6000 (Naegleria gruberi)

organism: Naegleria gruberi


title: NanoString nCounter Mouse Glial Profiling Panel (with customized probes)

status: Public on Jan 22 2025

city: Stockholm

first: Keying

last: Zhu

state: -- select state --

address: L8:04, Center for Molecular Medicine, Karolinska University Hospital

country: Sweden

institute: Karolinska Institutet

organism: Mus musculus


title: DNBSEQ-G400 (Olea europaea)

organism: Olea europaea


title: NextSeq 2000 (Mycobacteroides abscessus)

status: Public on Jan 21 2025

organism: Mycobacteroides abscessus


title: Illumina NovaSeq X Plus (Malus domestica)

organism: Malus domestica


title: Illumina NextSeq 500 (Homo sapiens; Influenza A virus (A/Guangdong-Maonan/51/2009(H1N1)))

organism:
Homo sapiens
Influenza A virus (A/Guangdong-Maonan/51/2009(H1N1))


title: Illumina NextSeq 500 (Picea abies)

organism: Picea abies


title: Illumina NovaSeq 6000 (Aspergillus terreus)

organism: Aspergillus terreus


title: Illumina NextSeq 500 (Argiope bruennichi)

organism: Argiope bruennichi


title: 3D-Gene® Human custom miRNA chip for PBca

city: Kanagawa

first: Satoko

last: Takizawa

state: Kamakura

country: Japan

institute: Toray Industries, Inc.

organism: Homo sapiens

technology: spotted oligonucleotide

description:
This custom array is a subtype of GPL29077, microarray for human comprehensive miRNAs. A series of oligonucleotide probes are spotted on the array.
Each platform includes 24 plex, 7200 spots.
Each plex includes 300 probe spots, which are triplicated.

manufacture_protocol: According to GPL29077


title: Illumina NovaSeq 6000 (Solanum pennellii)

organism: Solanum pennellii


title: Immune Monitoring 14-Plex Human ProcartaPlex™ Panel

status: Public on Jan 20 2025

city: Palo Alto

first: Lorinda

last: Chung

address: 1000 Welch Road

institute: Stanford University

technology: spotted peptide or protein


title: Illumina HiSeq 3000 (Laccaria bicolor; Populus tremula x Populus alba)

organism:
Laccaria bicolor
Populus tremula x Populus alba


title: Illumina NovaSeq 6000 (Vibrio parahaemolyticus)

status: Public on Jan 19 2025

organism: Vibrio parahaemolyticus


title: Immune Monitoring 65-Plex Human ProcartaPlex™ Panel


title: NextSeq 2000 (Tupaia belangeri)

organism: Tupaia belangeri


title: NextSeq 2000 (Vibrio cholerae C6706)

organism: Vibrio cholerae C6706


title: TaqMan Array Human Inflammation 96-well Plate (REF. 4418851, Applied Biosystems, USA)

status: Public on Jan 17 2025

city: Pecs

first: Hairui

last: Ou

address: Rokus

country: Hungary

institute: University of Pecs

technology: RT-PCR

description: PCR assay

manufacture_protocol: see manufacturer's website


title: Illumina NovaSeq X Plus (Solanum pimpinellifolium)

organism: Solanum pimpinellifolium


title: TaqMan Array Human Cytokine Network 96-well Plate (REF. 4418901, Applied Biosystems, USA)

description: PCR assay


title: Illumina NovaSeq X Plus (Mycobacterium tuberculosis CDC1551)

organism: Mycobacterium tuberculosis CDC1551


title: Illumina NovaSeq 6000 (Cycas panzhihuaensis)

status: Public on Jan 16 2025

organism: Cycas panzhihuaensis


title: Illumina NovaSeq 6000 (Brucella melitensis M5-90)

organism: Brucella melitensis M5-90


title: NextSeq 550 (Saccharomyces cerevisiae S288C)

organism: Saccharomyces cerevisiae S288C


title: Illumina NovaSeq 6000 (Gnetum montanum)

organism: Gnetum montanum


title: Illumina NovaSeq 6000 (Ginkgo biloba)

organism: Ginkgo biloba


title: NanoString nCounter Mouse Host Response V1.0 Panel

city: Honolulu

first: Sladjana

last: Prisic

state: HI

address: 1800 East-West Rd

institute: University of Hawaii

organism: Mus musculus

technology: in situ oligonucleotide

manufacture_protocol: NanoString


title: Zhu Lab Human TF Arrays 1.7K v1.0

status: Public on Jan 15 2025

city: Philadelphia

first: Yijing

last: Su

state: PA

address: Levy 326

department: Department of Oral Medicine

institute: University of Pennsylvania

manufacture_protocol: A transcription factor (TF) protein microarray that contains approximately 1,700 recombinant human full-length transcription factor and cofactor proteins expressed and purified from yeast


title: MGISEQ-2000RS (Penicillium oxalicum)

organism: Penicillium oxalicum


title: Custom nCounter Human Immune System Panel

city: Oullins-Pierre-Bénite

first: Marion

last: Debombourg

address: 165 chemindu grand revoyet

country: France

institute: biomerieux

manufacture_protocol: see Nanostring website


title: Illumina MiSeq (Escherichia coli str. K-12 substr. DH10B)


title: Illumina NovaSeq X (Leishmania braziliensis)

organism: Leishmania braziliensis


title: Illumina MiSeq (Bacillus subtilis subsp. subtilis)

status: Public on Jan 14 2025

organism: Bacillus subtilis subsp. subtilis


title: Illumina NovaSeq X Plus (Chlamydomonas reinhardtii)

organism: Chlamydomonas reinhardtii


title: Illumina NovaSeq X Plus (Neurospora crassa)

organism: Neurospora crassa


title: Illumina NovaSeq 6000 (Atta cephalotes)

organism: Atta cephalotes


title: Illumina NovaSeq 6000 (Homo sapiens; Human rhinovirus 1A)

status: Public on Jan 13 2025

organism:
Homo sapiens
Human rhinovirus 1A


title: MGISEQ-2000RS (Oryctolagus cuniculus)

organism: Oryctolagus cuniculus


title: Illumina NovaSeq X Plus (Mycobacteroides abscessus)

status: Public on Jan 10 2025

organism: Mycobacteroides abscessus


title: Illumina NovaSeq X Plus (Hyacinthus orientalis)

organism: Hyacinthus orientalis


title: Illumina HiSeq 4000 (Pisum sativum)

organism: Lathyrus oleraceus


title: Element AVITI (Apis mellifera)

organism: Apis mellifera


title: Illumina NovaSeq 6000 (Colon)

status: Public on Jan 09 2025

organism: Colon


title: Illumina MiSeq (Oceanobacillus iheyensis)

organism: Oceanobacillus iheyensis


title: BGISEQ-500 (Larimichthys polyactis)

organism: Larimichthys polyactis


title: Illumina NovaSeq X Plus (Rhodotorula toruloides)

organism: Rhodotorula toruloides


title: Illumina NovaSeq 6000 (Pinus tabuliformis)

organism: Pinus tabuliformis


title: Illumina NovaSeq 6000 (Proteus anguinus)

organism: Proteus anguinus


title: Illumina NovaSeq 6000 (Trametes versicolor)

organism: Trametes versicolor


title: Illumina NovaSeq 6000 (HIV-1 group M; Homo sapiens)

status: Public on Jan 08 2025

organism:
Homo sapiens
HIV-1 group M


title: Illumina NovaSeq 6000 (Nyctanthes arbor-tristis)

organism: Nyctanthes arbor-tristis


title: Custom nCounter Human Immune System Panel II

organism: Homo sapiens


title: Agilent-033703 Arabidopsis Whole Genome 1M tiling

city: Freiburg im Breisgau

first: Thomas

last: Laux

address: Schänzlestr. 1

department: Institut für Biologie III

country: Germany

institute: Albert-Ludwigs-Universität Freiburg

organism: Arabidopsis thaliana

description:
125bp tiling on TIAR 10 for chr1-5 and chrM&C. Every 2nd probe of these probes are reverse complemented.

Arrays of this design have barcodes that begin with 16033703 or 2533703.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: DNBSEQ-T7 (Klebsiella pneumoniae)

organism: Klebsiella pneumoniae


title: Illumina HiSeq 4000 (Klebsiella pneumoniae)


title: Illumina NovaSeq 6000 (Mycoplasmopsis bovis HB0801)

organism: Mycoplasmopsis bovis HB0801


title: Illumina NovaSeq 6000 (Pseudomonas syringae pv. actinidiae)

status: Public on Jan 07 2025

organism: Pseudomonas syringae pv. actinidiae


title: NextSeq 2000 (Neurospora crassa)

organism: Neurospora crassa


title: Illumina NovaSeq X (Homo sapiens; Mus musculus)

status: Public on Jan 06 2025

organism:
Homo sapiens
Mus musculus


title: Illumina NovaSeq 6000 (Populus yunnanensis)

organism: Populus yunnanensis


title: Illumina NovaSeq X Plus (Geobacter sulfurreducens)

organism: Geobacter sulfurreducens


title: Illumina NovaSeq X Plus (Riemerella anatipestifer)

organism: Riemerella anatipestifer


title: Illumina NovaSeq 6000 (Trichoderma cf. simile)

status: Public on Jan 05 2025

organism: Trichoderma cf. simile


title: Illumina NovaSeq 6000 (Populus simonii x Populus nigra)

organism: Populus x xiaohei


title: Illumina HiSeq 3000 (Stylosanthes guianensis)

status: Public on Jan 04 2025

organism: Stylosanthes guianensis


title: BGISEQ-500 (Larimichthys)

organism: Larimichthys


title: Illumina HiSeq 1500 (Eptesicus fuscus)

status: Public on Jan 02 2025

organism: Eptesicus fuscus


title: Illumina NovaSeq 6000 (Streptococcus anginosus)

status: Public on Jan 03 2025

organism: Streptococcus anginosus


title: Illumina HiSeq 2000 (human feces metagenome)

organism: human feces metagenome


title: Illumina NovaSeq X (Oryzias latipes)

status: Public on Jan 01 2025

organism: Oryzias latipes


title: HiSeq X Five (Rattus norvegicus)

organism: Rattus norvegicus


title: Nanostring nCounter Human Immunology V2 panel (NS_IMMUNOLOGY_V2_2328)

city: Bengaluru

first: Sudarson

last: Sundarrajan

address: Sri Shankara Research Centre 1st Cross, RM hospital, Shankara Matt Premises, Shankarapuram, Basavanagudi

department: Molecular Biology

country: India

institute: Cancyte Technologies Private Limited

organism: Homo sapiens


title: Illumina NovaSeq 6000 (Amorphophallus albus)

organism: Amorphophallus albus


title: NanoString Human Immunology v2 +  PLS_NS_Coronavirus_v1 Code Set (NS_Immunology_v2_C2328+PLS_NS_Coronavirus_v1.0)

city: Leuven

first: Johan

last: Van Weyenbergh

address: Herestraat 49

department: DMIT

country: Belgium

institute: KU Leuven

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: SOMAscan human proteomic assay [SOMAscan version 4.1]

status: Public on Sep 26 2022

city: Detroit

first: Adi

last: Tarca

state: MI

address: 3990 John R. St, 4 Brush South

institute: Wayne State University

manufacture_protocol: See manufacturer's website (somalogic.com).


title: SOMAscan human proteomic assay

status: Public on May 09 2020


title: Illumina NovaSeq 6000 (Homo sapiens; Mus)

organism:
Homo sapiens
Mus


title: Illumina NovaSeq 6000 (Populus davidiana)

organism: Populus davidiana


title: Pyrobaculum aerophilum full-genome spotted PCR fragment microarray

status: Public on Apr 23 2008

city: Santa Cruz

first: Todd

middle: Michael

last: Lowe

state: CA

address: 1156 High Street / MS: SOE-2

department: Biomolecular Engineering

institute: University of California, Santa Cruz

organism: Pyrobaculum aerophilum str. IM2

technology: spotted DNA/cDNA

description: Arrays were printed by double-tapping 16-pins on each individual slide, producing a 32 blocks of 24 rows by 24 columns of spots.

distribution: non-commercial

middle: M

first: Aaron

last: Cozen

manufacture_protocol: The Pyrobaculum aerophilum (Pae) microarray was designed to assay the expression levels of all predicted protein coding and RNA genes. These number 2350 "high confidence" protein gene predictions, 250 "low confidence" gene predictions (AORFs), and 102 RNA genes (transfer RNAs, ribosomal RNAs, small RNAs).  The array was constructed by designing oligonucleotide primers to span the most unique portions of each protein coding gene, averaging 350 nucleotides in length.  A custom Perl program was written to pick primers with the most desirable thermodynamic conditions possible for each gene using the Whitehead Institute's Primer3 program (version 3.09) as its core analysis engine.  In addition, all "intergenic" regions of 60 nucleotides or larger are represented on the array. Primers for intergenic regions and RNAs were designed to cover the entire target region. The polymerase chain reaction was performed on 100 µl reactions with 1µM of each primer, 2mM MgCl2, 1.0 mM dNTPs, 1.75 U Amplitaq DNA polymerase, 1x Amplitaq buffer, and 20ng genomic DNA for 30 cycles (94°C 30 sec, 50°C 1 min., 72°C 2 min.) to generate DNA fragments. All PCR products were checked by agarose gel electrophoresis, and failures were repeated or new primers designed. Each PCR amplicon was spotted on Corning UltraGAP II glass slides in duplicate by two separate print pins, so that each measured feature is represented at four separate locations on the microarray.  Arrays were printed using a "bullet train" robotic spotter constructed at UC Santa Cruz using the MGuide Version 2.0 manual (http://cmgm.stanford.edu/pbrown/mguide/index.html).   Arrays were printed with 16-pins, using the ver. 1.8.8 ArrayMaker software.


title: Illumina Human Whole-Genome DASL HT

status: Public on Apr 01 2012

technology: oligonucleotide beads