title: DNBSEQ-G400 (Phaseolus vulgaris)

status: Public on Feb 28 2025

last: GEO

country: USA

organism: Phaseolus vulgaris

technology: high-throughput sequencing

distribution: virtual


title: Illumina HiSeq 1500 (Macaca mulatta)

organism: Macaca mulatta


title: DNBSEQ-T7 (Pyrocoelia pectoralis)

organism: Pyrocoelia pectoralis


title: Illumina NovaSeq 6000 (Botrylloides diegensis)

organism: Botrylloides diegensis


title: Illumina NextSeq 500 (Rickettsia rickettsii str. 'Sheila Smith')


title: Illumina HiSeq 2000 (Leuconostoc mesenteroides)

organism: Leuconostoc mesenteroides


title: Illumina NovaSeq X Plus (Rickettsia rickettsii str. 'Sheila Smith')


title: NextSeq 550 (Coccidioides posadasii)

status: Public on Feb 27 2025

organism: Coccidioides posadasii


title: Illumina NovaSeq 6000 (mouse metagenome)

organism: mouse metagenome


title: Illumina NovaSeq 6000 (fermentation metagenome)

organism: fermentation metagenome


title: Illumina HiSeq 2500 (Coptis chinensis)

organism: Coptis chinensis


title: NextSeq 550 (unidentified)

organism: unidentified


title: Utz Lab ACA Array version prototype

status: Public on Feb 26 2025

city: Stanford

first: Allan

last: Feng

state: CA

address: 269 Campus Dr

department: Imm/Rheum

institute: Stanford School of Medicine

organism: Homo sapiens

technology: spotted peptide or protein

description: Homo sapiens, E.Coli, HEK293 cells

distribution: non-commercial

manufacture_protocol: We conjugated recombinant protein antigens to uniquely barcoded magnetic  beads (MagPlex® Microspheres). 8 ug of each antigen or control antibody was diluted in phosphate buffered saline (PBS) and transferred to 96-well plates. Diluted antigens and control antibodies were conjugated to 1 million carboxylated magnetic beads per ID.


title: Utz Lab CTD Array version prototype

description: Homo sapiens, Goat, Spodoptera frugiperda, Bovine, Escherichia coli, Porcine, Wheat Germ


title: Illumina NovaSeq 6000 (Garra andruzzii)

organism: Garra andruzzii


title: Illumina MiSeq (Ruminiclostridium cellulolyticum)

organism: Ruminiclostridium cellulolyticum


title: Utz Lab Protein Fragment Array

description: Homo sapiens, E.Coli

manufacture_protocol: We conjugated recombinant protein fragment antigens (between 25 and 150 amino acids long) to uniquely barcoded magnetic beads (MagPlex® Microspheres). Each antigen or control  was diluted in phosphate buffered saline (PBS) and transferred to 96-well plates. Diluted antigens and control antibodies were conjugated to 1 million carboxylated magnetic beads per ID.


title: Element AVITI (Macaca mulatta)


title: Illumina NextSeq 500 (Homo sapiens; Simian immunodeficiency virus)

organism:
Homo sapiens
Simian immunodeficiency virus


title: Element AVITI (Gallus gallus)

organism: Gallus gallus


title: Illumina HiSeq 2000 (Latilactobacillus sakei)

organism: Latilactobacillus sakei


title: Illumina NextSeq 500 (Homo sapiens; Human immunodeficiency virus 2)

organism:
Homo sapiens
Human immunodeficiency virus 2


title: Utz Lab ACA Array version 3

description: Homo sapiens, E.Coli, HEK293 cells


title: [Axiom_Clam_Mm1] 60K Affymetrix Axiom HD Genotyping Array

city: Stony Brook

first: Denis

last: Grouzdev

address: 100 Nicolls Rd

institute: Stony Brook University

organism: Mercenaria mercenaria

technology: in situ oligonucleotide

description:
#%chip_type=Axiom_Clam_Mm1
#%genome-species=Axiom_Clam_Mm1.r2
#%genome-version=N/A

distribution: custom-commercial

manufacture_protocol: see manufacturer's web site


title: Illumina NovaSeq 6000 (Aeromonas hydrophila)

organism: Aeromonas hydrophila


title: DNBSEQ-G400 FAST (Mesocricetus auratus)

status: Public on Feb 25 2025

organism: Mesocricetus auratus


title: Illumina NovaSeq X Plus (Saccharomyces cerevisiae S288C)

organism: Saccharomyces cerevisiae S288C


title: NextSeq 2000 (Oryza sativa)

organism: Oryza sativa


title: Illumina NovaSeq 6000 (Clusia rosea)

status: Public on Feb 21 2025

organism: Clusia rosea


title: Element AVITI (Drosophila melanogaster)

organism: Drosophila melanogaster


title: Illumina NovaSeq 6000 (Lactobacillus)

organism: Lactobacillus


title: NextSeq 2000 (Enterococcus faecalis OG1RF)

organism: Enterococcus faecalis OG1RF


title: PacBio RS (Bos taurus)

status: Public on Feb 22 2025

organism: Bos taurus


title: Illumina NovaSeq X Plus (Micropterus salmoides)

status: Public on Feb 20 2025

organism: Micropterus salmoides


title: NextSeq 2000 (Cochliomyia hominivorax)

organism: Cochliomyia hominivorax


title: Illumina NovaSeq X Plus (Novosphingobium aromaticivorans DSM 12444)


title: Illumina NovaSeq 6000 (Escherichia coli J53)

organism: Escherichia coli J53


title: Illumina NovaSeq 6000 (Clusia multiflora)

organism: Clusia multiflora


title: Utz Lab CTD Array version 3

organism: Homo sapiens


title: ISMMS-Human 1.3k [SOMAscan Assay v 1.3k]

status: Public on Feb 19 2025

city: New York

first: Joseph

last: Castellano

state: NY

address: 1425 Madison Avenue

department: Neuroscience

institute: Icahn School of Medicine at Mount Sinai


title: Illumina NextSeq 500 (Guillardia theta)

organism: Guillardia theta


title: PrimeScript RT-PCR Kit (RR014B, Takara).

city: Guangzhou

first: Liu

last: Rui

state: Guangdong

address: 651 Dongfeng East Road

country: China

institute: Sun Yat-sen University Cancer Center

technology: RT-PCR

description: PCR assay

manufacture_protocol: see manufacturer's website


title: Sequel IIe (Lumbricus rubellus)

organism: Lumbricus rubellus


title: Illumina NextSeq 500 (Bigelowiella natans)

organism: Bigelowiella natans


title: Illumina NovaSeq X Plus (Capsicum annuum)

organism: Capsicum annuum


title: Illumina NovaSeq 6000 (Arachis hypogaea)

status: Public on Feb 18 2025

organism: Arachis hypogaea


title: Illumina HiSeq 2000 (Nonomuraea gerenzanensis)

organism: Nonomuraea gerenzanensis


title: Illumina NovaSeq 6000 (Eublepharis macularius)

organism: Eublepharis macularius


title: Illumina NovaSeq X (Meloidogyne incognita; Solanum lycopersicum)

organism:
Solanum lycopersicum
Meloidogyne incognita


title: Illumina NovaSeq 6000 (Danio rerio; Mycobacterium marinum)

status: Public on Feb 15 2025

organism:
Mycobacterium marinum
Danio rerio


title: Illumina NovaSeq X Plus (Actinobacillus pleuropneumoniae serovar 1 str. 4074)

status: Public on Feb 17 2025


title: Illumina HiSeq 4000 (Cryptococcus gattii)

status: Public on Feb 14 2025

organism: Cryptococcus gattii


title: NextSeq 2000 (Glycine max)

organism: Glycine max


title: Illumina HiSeq 2000 (Haematococcus lacustris)

organism: Haematococcus lacustris


title: PromethION (Salix brachista)

organism: Salix brachista


title: MGISEQ-2000RS (Bos frontalis)

organism: Bos frontalis


title: Illumina NextSeq 500 (Oculina patagonica)

status: Public on Feb 13 2025

organism: Oculina patagonica


title: NextSeq 2000 (Artemia franciscana)

organism: Artemia franciscana


title: Illumina NovaSeq 6000 (Erwinia amylovora)

organism: Erwinia amylovora


title: Illumina NovaSeq 6000 (Saccharomyces cerevisiae BY4743)

organism: Saccharomyces cerevisiae BY4743


title: Illumina HiSeq 4000 (Shewanella oneidensis MR-1)

status: Public on Feb 12 2025

organism: Shewanella oneidensis MR-1


title: NextSeq 550 (Populus balsamifera)

organism: Populus balsamifera


title: NextSeq 550 (Homo sapiens; Pneumocystis jirovecii RU7)

status: Public on Feb 11 2025

organism:
Homo sapiens
Pneumocystis jirovecii RU7


title: NextSeq 550 (Populus trichocarpa)

organism: Populus trichocarpa


title: Hu_TregsPlus (Pesenacker)

city: London

first: Anne

middle: M

last: Pesenacker

state: England

address: Pears Building, UCL Institute of Immunity and Transplantation, Rowland Hill Street

department: Div Infection and Immunity

country: United Kingdom

institute: UCL

organism: Homo sapiens

technology: other

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: Illumina HiSeq 2500 (Streptomyces peucetius)

organism: Streptomyces peucetius


title: Illumina NovaSeq 6000 (Salix brachista)


title: Illumina NextSeq 500 (Felis catus)

organism: Felis catus


title: Illumina NovaSeq 6000 (Lemna aequinoctialis)

organism: Lemna aequinoctialis


title: Illumina NovaSeq 6000 (Culter alburnus)

organism: Culter alburnus


title: Illumina NovaSeq 6000 (Escherichia phage vB_EcoM_Goslar)

organism: Escherichia phage vB_EcoM_Goslar


title: Illumina NovaSeq X Plus (Phocoena phocoena)

status: Public on Feb 10 2025

organism: Phocoena phocoena


title: Illumina MiSeq (Xenorhabdus szentirmaii)

organism: Xenorhabdus szentirmaii


title: Illumina NovaSeq 6000 (Ecsenius pulcher)

organism: Ecsenius pulcher


title: Illumina NovaSeq 6000 (Allium mongolicum)

organism: Allium mongolicum


title: NanoString nCounter custom mRNA expression platform

city: Bellinzona

first: Luciano

last: Cascione

state: Ticino

address: Via Chiesa 5

department: Lymphoma & Genomics Research Program

country: Switzerland

institute: IOR

manufacture_protocol: See manufacturer's web site


title: Illumina NovaSeq 6000 (Hemicentrotus pulcherrimus)

organism: Hemicentrotus pulcherrimus


title: Illumina NovaSeq X (Cryptocercus punctulatus)

organism: Cryptocercus punctulatus


title: DNBSEQ-T7 (Scylla paramamosain)

status: Public on Feb 09 2025

organism: Scylla paramamosain


title: HiSeq X Ten (Monopterus albus)

organism: Monopterus albus


title: Illumina NovaSeq X Plus (Macaca nemestrina)

organism: Macaca nemestrina


title: DNBSEQ-G400 FAST (Homo sapiens)


title: Illumina NovaSeq 6000 (Homo sapiens/Rattus norvegicus xenograft)

status: Public on Feb 07 2025


title: Illumina HiSeq 4000 (Dolichospermum flos-aquae)

organism: Dolichospermum flos-aquae


title: MinION (mixed DNA library)

status: Public on Feb 06 2025

organism: mixed DNA library


title: Illumina NextSeq 500 (Clytia hemisphaerica)

organism: Clytia hemisphaerica


title: NanoString nCounter Human Host Response V1.0 Panel

city: Brighton

first: Sarah

last: Unterberger

address: Biology Road

institute: BSMS

organism: Homo sapiens

manufacture_protocol: Host Response | NanoString


title: NextSeq 2000 (Pocillopora acuta)

organism: Pocillopora acuta


title: NextSeq 2000 (Astroides calycularis)

organism: Astroides calycularis


title: NextSeq 2000 (Clytia hemisphaerica)


title: Agilent-085589 GenetiSure Cyto CGH Microarray 4x180K  G5983B G5983A

city: Palo Alto

last: Agilent Technologies

institute: Agilent Technologies

description:
Constitutional CMA version 1

Arrays of this design have barcodes that begin with 16085589 or 2585589

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

distribution: commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: DNBSEQ-G50 (Clytia hemisphaerica)


title: NextSeq 2000 (Artibeus jamaicensis)

status: Public on Feb 05 2025

organism: Artibeus jamaicensis


title: Human miRCURY LNA miRNA Focus PCR Inflammation Panel

city: Marseille

first: Lourdes

last: Mounien

address: 27 Boulevard Jean Moulin

country: France

institute: Aix Marseille University


title: [Clariom_S_Human] Affymetrix Clariom S Assay [gene level]

city: Linkoping

first: Sallam Hasan Saleem Abdallah

last: Abdallah

state: SWEDEN

address: Linköping

country: Sweden

institute: Linköping University

manufacture_protocol: See manufacturer's website.


title: DNBSEQ-G50 (Astroides calycularis)


title: PromethION (Caenorhabditis elegans)

organism: Caenorhabditis elegans


title: DNBSEQ-T7 (Hordeum vulgare)

organism: Hordeum vulgare


title: Illumina NovaSeq X Plus (Citrullus lanatus)

organism: Citrullus lanatus


title: PromethION (Citrullus lanatus)


title: [RAE230A] Affymetrix Rat Expression Set 230 [CDF: Brainarray Entrez Gene version 25.0]

city: Ann Arbor

first: Megan

middle: Hastings

last: Hagenauer

state: Michigan

address: 109 Zina Pitcher Pl.

department: Michigan Neuroscience Institute (MNI)

institute: University of Michigan

organism: Rattus norvegicus

manufacture_protocol: See manufacturer's website (www.affymetrix.com).


title: NextSeq 2000 (Lemna japonica)

status: Public on Feb 04 2025

organism: Lemna japonica


title: Illumina NovaSeq 6000 (Candida albicans; Enterococcus faecalis)

organism:
Enterococcus faecalis
Candida albicans


title: NextSeq 2000 (Candida albicans; Enterococcus faecalis; Mus musculus)

organism:
Enterococcus faecalis
Candida albicans
Mus musculus


title: Illumina NovaSeq 6000 (Candida albicans; Mus musculus)

organism:
Candida albicans
Mus musculus


title: Illumina NovaSeq 6000 (Candida albicans; Enterococcus faecalis; Mus musculus)


title: NextSeq 2000 (Lemna minor)

organism: Lemna minor


title: Illumina HiSeq 1500 (Bos grunniens)

organism: Bos grunniens


title: Illumina NovaSeq 6000 (Fusobacterium nucleatum subsp. nucleatum ATCC 25586; Mus musculus)

organism:
Mus musculus
Fusobacterium nucleatum subsp. nucleatum ATCC 25586


title: Illumina NovaSeq 6000 (Enterococcus faecalis; Mus musculus)

organism:
Enterococcus faecalis
Mus musculus


title: NextSeq 550 (Aliivibrio fischeri)

status: Public on Feb 03 2025

organism: Aliivibrio fischeri


title: Illumina NextSeq 500 (Taenia solium)

status: Public on Feb 02 2025

organism: Taenia solium


title: Element AVITI (Saccharomyces cerevisiae)

organism: Saccharomyces cerevisiae


title: Illumina NovaSeq 6000 (Salmo trutta)

organism: Salmo trutta


title: Illumina HiSeq 2000 (Synechococcus elongatus)

status: Public on Feb 01 2025

organism: Synechococcus elongatus


title: DNBSEQ-G50 (Pocillopora acuta)

organism: Pocillopora acuta


title: Agilent-063245 E. coli Custom 8x15K array (Probe name version)

city: Sao Paulo

first: Carlos

middle: Alberto

last: Moreira-Filho

state: SP

address: Av. Dr. Eneas Carvalho de Aguiar 647

department: Departments of Pediatrics

country: Brazil

institute: Faculdade de Medicina da Universidade de Sao Paulo

organism:
Escherichia coli O157:H7 str. EDL933
Escherichia coli CFT073
Escherichia coli O157:H7 str. Sakai
Escherichia coli str. K-12 substr. MG1655
Shigella flexneri 5a str. M90T

description: plasmid pWR501 from Shigella flexneri 5a str. M90T


title: NanoString nCounter SPRINT Profiler Mouse Immunology [NS_Immunology_Mm_C2269]

status: Public on Jul 30 2023

city: Novosibirsk

first: Roman

middle: Yurievich

last: Perik-Zavodskii

state: Novosibirsk region

address: Yadrincevskaya 14

country: Russia

institute: "Research Institute of Fundamental and Clinical Immunology" (RIFCI)

organism: Mus musculus

description:
Nucleic acid fluorescence barcoding and automated fluorescence microscopy.
NS_Immunology_Mm_C2269


title: Universal protein binding microarray (PBM) 8x60k (Bulyk lab design; AMADID #030236)

city: Boston

first: Martha

middle: L.

last: Bulyk

state: MA

address: 77 Avenue Louis Pasteur, Rm 468

department: Division of Genetics

institute: Brigham and Women's Hospital

organism: synthetic construct

manufacture_protocol: In situ oligosynthesized array with synthetic sequences that cover all possible 10-mers (Berger et al., Nature Biotechnology 2006). AMADID #030236


title: Mouse BioMark-qRTPCR

city: Albuquerque

first: Rajanikanth

last: Vadigepalli

state: PA

address: 1 University of New Mexico

institute: University of New Mexico

description:
High-dimensional analysis of single neurosphere molecular states reveals an ethanol-mediated shift in distribution along maturation trajectories
PCR assay


title: Nanostring nCounter Elements TagSets

city: Kensington

first: Irina

last: Voineagu

state: NSW

address: High St

department: Biotechnology and Biomolecular Sciences

country: Australia

institute: The University of New South Wales

organism: Homo sapiens