title: Illumina MiSeq (human oral metagenome)

status: Public on Mar 31 2025

last: GEO

country: USA

organism: human oral metagenome

technology: high-throughput sequencing

distribution: virtual


title: Illumina HiSeq 3000 (Homo)

organism: Homo


title: Illumina NovaSeq X Plus (Haloferax volcanii)

status: Public on Mar 30 2025

organism: Haloferax volcanii


title: Illumina NovaSeq 6000 (Phyllostomus discolor)

status: Public on Mar 27 2025

organism: Phyllostomus discolor


title: MinION (Hepatitis B virus)

organism: Hepatitis B virus


title: NextSeq 2000 (Agrobacterium tumefaciens)

organism: Agrobacterium tumefaciens


title: Illumina NovaSeq 6000 (Acidithiobacillus caldus)

organism: Acidithiobacillus caldus


title: NextSeq 1000 (Caenorhabditis elegans)

status: Public on Mar 26 2025

organism: Caenorhabditis elegans


title: Illumina NovaSeq 6000 (Primula forbesii)

organism: Primula forbesii


title: Agilent-085544 cucumber 4x44K Microarray

city: Verona

first: Anita

last: Zamboni

address: Strada Le Grazie, 15

department: Biotechnology

country: Italy

institute: University of Verona

organism: Cucumis sativus

technology: in situ oligonucleotide

description: Gy14 gynoecious inbred line

distribution: custom-commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina NovaSeq 6000 (Tachysurus ussuriensis)

organism: Tachysurus ussuriensis


title: NextSeq 550 (Patiria miniata)

organism: Patiria miniata


title: Illumina NovaSeq X Plus (Bos taurus)

organism: Bos taurus


title: Illumina MiniSeq (Rattus norvegicus)

organism: Rattus norvegicus


title: Illumina NovaSeq X (Anolis carolinensis)

status: Public on Mar 25 2025

organism: Anolis carolinensis


title: Illumina NovaSeq 6000 (Tetrahymena thermophila)

organism: Tetrahymena thermophila


title: Illumina NovaSeq 6000 (Taxus x media)

organism: Taxus x media


title: Illumina HiSeq 2500 (Arabidopsis halleri subsp. gemmifera)

status: Public on Mar 24 2025

organism: Arabidopsis halleri subsp. gemmifera


title: NextSeq 2000 (Salmo salar)

organism: Salmo salar


title: NextSeq 550 (Caenorhabditis briggsae)

organism: Caenorhabditis briggsae


title: Illumina NovaSeq X Plus (Oryctolagus cuniculus)

status: Public on Mar 21 2025

organism: Oryctolagus cuniculus


title: NanoString Mouse v1.5 -miRNA assay

city: Bengaluru

first: Thimmaiah

last: Govindaraju

state: India

address: Jakkur

department: New Chemistry Unit

country: India

institute: JNCASR

organism: Mus musculus

technology: other

description: nCounter miRNA Expression Assay


title: Illumina NovaSeq 6000 (Etheostoma nigrum)

organism: Etheostoma nigrum


title: Illumina NovaSeq 6000 (Etheostoma flabellare)

organism: Etheostoma flabellare


title: Illumina NovaSeq 6000 (Etheostoma caeruleum)

organism: Etheostoma caeruleum


title: Illumina NovaSeq X Plus (Homo sapiens; Pan troglodytes)

status: Public on Mar 20 2025

organism:
Pan troglodytes
Homo sapiens


title: Illumina NovaSeq X Plus (Pan troglodytes)

organism: Pan troglodytes


title: NextSeq 2000 (Solanum pennellii)

organism: Solanum pennellii


title: Illumina NovaSeq X Plus (Mesocricetus auratus)

organism: Mesocricetus auratus


title: BGISEQ-500 (Vicia faba)

status: Public on Mar 19 2025

organism: Vicia faba


title: Illumina NovaSeq 6000 (Homo sapiens; Macaca mulatta; Pan troglodytes; Pongo abelii)

organism:
Macaca mulatta
Pan troglodytes
Pongo abelii
Homo sapiens


title: Illumina NextSeq 500 (Hepacivirus hominis; Homo sapiens)

organism:
Homo sapiens
Hepacivirus hominis


title: NextSeq 2000 (Drosophila virilis)

organism: Drosophila virilis


title: Illumina NovaSeq 6000 (Bacillus cereus ATCC 14579)

organism: Bacillus cereus ATCC 14579


title: Illumina NovaSeq 6000 (Pseudomonas savastanoi pv. phaseolicola 1448A)


title: Illumina NovaSeq 6000 (Zingiber officinale)

status: Public on Mar 17 2025

organism: Zingiber officinale


title: Illumina NovaSeq 6000 (Candida albicans SC5314; Klebsiella pneumoniae 700603)

organism:
Candida albicans SC5314
Klebsiella pneumoniae 700603


title: Illumina NovaSeq 6000 (Klebsiella pneumoniae 700603)

organism: Klebsiella pneumoniae 700603


title: Illumina NovaSeq 6000 (Paraphaeosphaeria sporulosa)

status: Public on Mar 14 2025

organism: Paraphaeosphaeria sporulosa


title: Illumina NovaSeq 6000 (Drosophila teissieri)

organism: Drosophila teissieri


title: NanoString Custom nCounter Metabolic Flux

status: Public on Mar 13 2025

city: Nashville

first: Jamey

middle: Dale

last: Young

state: Tennessee

address: 2414 Highland Ave

department: Chemical and Biomolecular Engineering

institute: Vanderbilt University

organism: Mus musculus

manufacture_protocol: See manufacturer's web site.


title: Illumina NovaSeq 6000 (Helianthemum marifolium subsp. marifolium)


title: Illumina NextSeq 500 (Neocallimastix lanati (nom. inval.); Pseudoramibacter alactolyticus)

organism:
Pseudoramibacter alactolyticus
Neocallimastix lanati (nom. inval.)


title: Illumina NovaSeq 6000 (Drosophila santomea)

organism: Drosophila santomea


title: Illumina NovaSeq 6000 (Alteromonas macleodii; Thalassiosira pseudonana)

organism:
Alteromonas macleodii
Thalassiosira pseudonana


title: Illumina NovaSeq X (Cryptococcus neoformans)

organism: Cryptococcus neoformans


title: Illumina MiSeq (Bat coronavirus)

organism: Bat coronavirus


title: NextSeq 2000 (Acinetobacter baumannii AB0057)

status: Public on Mar 12 2025

organism: Acinetobacter baumannii AB0057


title: Illumina NextSeq 500 (Erwinia amylovora)

organism: Erwinia amylovora


title: Illumina NovaSeq 6000 (Helianthemum origanifolium)

organism: Helianthemum origanifolium


title: Illumina NovaSeq 6000 (Helianthemum marifolium subsp. molle)

organism: Helianthemum marifolium subsp. molle


title: Illumina NextSeq 500 (Megasphaera elsdenii; Neocallimastix lanati (nom. inval.))

organism:
Megasphaera elsdenii
Neocallimastix lanati (nom. inval.)


title: Illumina NovaSeq 6000 (Oreochromis)

status: Public on Mar 11 2025

organism: Oreochromis


title: Illumina NovaSeq 6000 (Helianthemum marifolium subsp. andalusicum)


title: Illumina NextSeq 500 (Pseudoramibacter alactolyticus)

organism: Pseudoramibacter alactolyticus


title: Illumina NextSeq 500 (Megasphaera elsdenii)

organism: Megasphaera elsdenii


title: Illumina NovaSeq 6000 (Etheostoma blennioides)

organism: Etheostoma blennioides


title: Illumina NovaSeq 6000 (Morone saxatilis)

status: Public on Mar 10 2025

organism: Morone saxatilis


title: Illumina NovaSeq X Plus (Thalassiosira pseudonana)

organism: Thalassiosira pseudonana


title: Illumina NovaSeq X Plus (Human respiratory syncytial virus A strain Long; Mus musculus)

organism:
Mus musculus
Human respiratory syncytial virus A strain Long


title: Illumina NovaSeq X Plus (Pseudomonas donghuensis)

organism: Pseudomonas donghuensis


title: Illumina NovaSeq 6000 ([Candida] boidinii)

organism: [Candida] boidinii


title: NextSeq 1000 (Escherichia coli O157:H7 str. Sakai)

status: Public on Mar 06 2025

organism: Escherichia coli O157:H7 str. Sakai


title: Illumina NovaSeq 6000 (Channa argus)

organism: Channa argus


title: DNBSEQ-T7 (Anolis carolinensis)

status: Public on Mar 07 2025

organism: Anolis carolinensis


title: Illumina NovaSeq 6000 (Ceratopteris richardii)

organism: Ceratopteris richardii


title: Illumina NovaSeq 6000 (Novosphingobium aromaticivorans)

organism: Novosphingobium aromaticivorans


title: BGISEQ-500 (Salmo salar)

organism: Salmo salar


title: 5K BAC CGH array - hg18 liftover hg38

city: paris

first: Elodie

last: chapeaublanc

address: 26 rue d'ulm

department: UMR 144

country: France

institute: Institut Curie

organism: Homo sapiens

technology: spotted DNA/cDNA

manufacture_protocol:
The IntegraChipTM microarray was designed by the CIT-CGH consortium (Olivier Delattre Laboratory, Curie Institute, Paris; Charles Theillet Laboratory, CRLC Val d'Aurelle, Montpellier; Stanislas du Manoir Laboratory, IGBMC, Strasbourg) and the company IntegraGenTM (http://www.integragen.com).
Bacterial artificial chromosome (BAC) clones were chosen to obtain a systematic coverage of the genome, and detailed coverage of regions containing genes previously implicated in carcinogenesis. The median gap between two successive clones is 600 kb. Four replicate spots were deposited on the slides. For each sample, 500-600 ng of sonicated DNA was labelled by Random-Priming (Bioprime Labelling kit, Invitrogen, Carlsberg, CA, USA) according to the suppliers\x{2019} instructions, but for 18h. For tumour DNA, final concentrations of nucleotides were 0.02 mM of dCTP-Cy5 (Amersham Biosciences), 0.1 mM of dATP, dGTP, dTTP and 0.025 mM dCTP. For control DNA, 0.04 dCTP-Cy3 (Amersham Biosciences), 0.2 mM of dATP, dGTP, dTTP and 0.05 mM dCTP. Labelled DNAs were purified using MicroSpin-G50 columns (Amersham Biosciences). COT Human DNA (70 \x{03bc}g, Roche Diagnostics) and Salmon Testes DNA (30 \x{03bc}g, Sigma Chemical Co.) were added to the mixed tumour and reference DNAs. They were subsequently concentrated using a microcon YM-30 (Millipore) and resuspended to obtain 200 \x{03bc}l of hybridization solution (final concentration: 50% formamide, 0.8 x SCC, 10% W/V dextran sulfate, 2% SDS, pH=7). Finally, the probes were pre-annealed for 3 hours at 37°C. Every step was carried out in the HS 4800 hybridization station (Tecan). Slide pre-treatment included rinsing with 2 x SSC, 0.1% SDS at 30 °C for 30s, 2 x SSC at 30 °C for 30s and drying. After probe injection, hybridization was performed for 68h at 37°C under low agitation. Four post-hybridization washes were carried out: 50% formamide, 2 x SSC, 0.1% SDS at 45 °C for 37 s, 4 times; 2 x SSC, 0.1% SDS at 45 °C for 37 sec, 4 times; 4 x SSC, 0.1 Tween 20 at 45 °C for 37 sec, 4 times; slides were finally nitrogen dried and scanned using a ScanArray 4000 (Packard Bioscience). Images were quantified using UCSF Spot 2.1cc (Jain et al., 2002).


title: Illumina NovaSeq 6000 (Nostoc sp. PCC 7120 = FACHB-418)

status: Public on Mar 04 2025

organism: Nostoc sp. PCC 7120 = FACHB-418


title: Illumina NovaSeq X Plus (Ixodes ricinus)

status: Public on Mar 05 2025

organism: Ixodes ricinus


title: PromethION (Human immunodeficiency virus)

organism: Human immunodeficiency virus


title: Illumina HiSeq 2500 (Magallana gigas)

organism: Magallana gigas


title: Illumina NovaSeq 6000 (Naumovozyma castellii)

organism: Naumovozyma castellii


title: NextSeq 2000 (Naumovozyma castellii)


title: Illumina NovaSeq X (Callithrix jacchus)

organism: Callithrix jacchus


title: Sequel II (Acipenser transmontanus)

organism: Acipenser transmontanus


title: Illumina NovaSeq 6000 (Morone chrysops)

organism: Morone chrysops


title: Illumina NextSeq 500 (Streptomyces sp. Je 1-4 4N24)

organism: Streptomyces sp. Je 1-4 4N24


title: Illumina NovaSeq X Plus (Ictalurus furcatus)

status: Public on Mar 03 2025

organism: Ictalurus furcatus


title: DNBSEQ-T7 (Eumeta variegata)

status: Public on Mar 02 2025

organism: Eumeta variegata


title: Human/Rat Placenta & Trophoblast-50 Nucleos(t)ide Homeostasis Maintaining Genes v1.0

status: Public on Mar 08 2025

city: Hradec Kralove

first: Mohammed

last: Ali

address: Čechova 722/2, 50002 Hradec Králové 2

department: pharmacology and Toxicology

country: Czech Republic

institute: Charles university

organism:
Homo sapiens
Rattus norvegicus

technology: RT-PCR

description:
TaqMan qPCR assay
Charles Univ-Faculty of Pharmacy-Placenta Team

manufacture_protocol: see manufacturer's website


title: Illumina NovaSeq 6000 (Escherichia coli O157:H7 str. Sakai)

organism: Escherichia coli O157:H7 str. Sakai


title: Sequel II (Acipenser medirostris)

organism: Acipenser medirostris


title: DNBSEQ-G400 (Nothobranchius furzeri)

organism: Nothobranchius furzeri


title: Agilent Custom Arabidopsis Gene Expression 8x60k Microarray: AMADID: 48015

status: Public on Mar 01 2025

city: Hyderabad

first: Subhadeep

last: Chatterjee

address: Uppal, Hyderabad

institute: Center for DNA Fingerprinting and Diagnostics, Hyderabad

organism: Arabidopsis thaliana

manufacturer: designed by Genotypic Technology Private Limited. Agilent Technologies