title: Illumina HiSeq 2500 (Pseudogymnoascus destructans)

status: Public on Apr 30 2025

last: GEO

country: USA

organism: Pseudogymnoascus destructans

technology: high-throughput sequencing

distribution: virtual


title: Illumina NovaSeq 6000 (Passer domesticus)

organism: Passer domesticus


title: NextSeq 2000 (Saccharolobus islandicus)

organism: Saccharolobus islandicus


title: Illumina NovaSeq X (Pan troglodytes)

status: Public on Apr 29 2025

organism: Pan troglodytes


title: Element AVITI (Escherichia coli str. K-12 substr. MG1655)


title: Illumina HiSeq 2500 (Sporobolus indicus var. pyramidalis)

organism: Sporobolus indicus var. pyramidalis


title: Illumina HiSeq 2500 (Sporobolus stapfianus)

organism: Sporobolus stapfianus


title: Human GMAP-UTS520601 array v2

city: Saskatoon

first: Franco

middle: J

last: Vizeacoumar

state: Saskatchewan

address: 4D40 Health Sciences Building, 107 Wiggins Road

department: Oncology

country: Canada

institute: University of Saskatchewan

organism: Homo sapiens

technology: in situ oligonucleotide

distribution: custom-commercial

manufacture_protocol: See manufacturer's web site.


title: Illumina HiSeq 4000 (Procambarus virginalis)

status: Public on Apr 28 2025

organism: Procambarus virginalis


title: Illumina NovaSeq 6000 (Procambarus virginalis)


title: Illumina NovaSeq X Plus (Procambarus virginalis)


title: Illumina NovaSeq X Plus (Anopheles gambiae)

organism: Anopheles gambiae


title: Illumina NovaSeq 6000 (Gnathonemus petersii)

organism: Gnathonemus petersii


title: NextSeq 2000 (Escherichia coli O157:H7)

organism: Escherichia coli O157:H7


title: Illumina NovaSeq X Plus (Leptospira interrogans)

organism: Leptospira interrogans


title: Illumina NovaSeq X Plus (Anopheles coluzzii)

organism: Anopheles coluzzii


title: Illumina NovaSeq X Plus (Geminocystis herdmanii PCC 6308)

organism: Geminocystis herdmanii PCC 6308


title: Illumina NovaSeq 6000 (Bos)

organism: Bos


title: Illumina NovaSeq 6000 (Eremothecium gossypii)

status: Public on Apr 25 2025

organism: Eremothecium gossypii


title: NextSeq 2000 (Pan troglodytes)


title: Illumina NovaSeq 6000 (Daphnia pulex)

organism: Daphnia pulex


title: Illumina NovaSeq 6000 (Hydra oligactis)

organism: Hydra oligactis


title: Illumina NovaSeq 6000 (Ammotragus lervia)

organism: Ammotragus lervia


title: Illumina NovaSeq 6000 (Ovis canadensis)

organism: Ovis canadensis


title: Illumina NovaSeq X Plus (Caulobacter vibrioides)

status: Public on Apr 24 2025

organism: Caulobacter vibrioides


title: NextSeq 2000 (Bradyrhizobium sp. USDA 3456)

organism: Bradyrhizobium sp. USDA 3456


title: NextSeq 2000 (Acinetobacter baumannii)

organism: Acinetobacter baumannii


title: Illumina NovaSeq X Plus (Botryllus schlosseri)

organism: Botryllus schlosseri


title: Illumina NovaSeq 6000 (Saccharolobus islandicus)

organism: Saccharolobus islandicus


title: Illumina NovaSeq 6000 (Methanocaldococcus jannaschii)

organism: Methanocaldococcus jannaschii


title: Illumina NovaSeq 6000 (Phragmites australis)

status: Public on Apr 23 2025

organism: Phragmites australis


title: MinION (Salmonella enterica subsp. enterica serovar Typhi)


title: Illumina HiSeq 4000 (Haemophilus influenzae)

organism: Haemophilus influenzae


title: Illumina NovaSeq X (Chlorocebus aethiops)

status: Public on Apr 22 2025

organism: Chlorocebus aethiops


title: Coronavirus and Influenza Antigen Microarray

city: Irvine

first: Li

last: Liang

state: CA

address: MedSurge II

institute: University of California Irvine

organism:
Influenza A virus
Severe acute respiratory syndrome coronavirus 2

technology: other

description: Purified proteins were printed onto ONCYTE AVID nitrocellulose-coated slides (Grace Bio-Labs, Bend, OR) using an OmniGrid 100 microarray printer (GeneMachines)

manufacturer: 16 antigens from SARS-CoV-2 or Influenza expressed in either baculovirus or HEK-293 cells. All antigens were supplied by Sino Biological Inc.

manufacture_protocol: UCI Protein Microarray Lab


title: BLYM-777 nanoString custom Probeset

city: Leiden

first: Ruben

last: de Groen

address: Albinusdreef 2

department: Hematology

country: Netherlands

institute: Leiden University Medical Center

organism: Homo sapiens

manufacturer: NanoString Technologies, Inc.; Seattle, WA

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: Illumina NovaSeq X Plus (Hepatitis B virus)

organism: Hepatitis B virus


title: Illumina NovaSeq X Plus (Vibrio cholerae C6706)

status: Public on Apr 21 2025

organism: Vibrio cholerae C6706


title: Illumina NovaSeq X (Rorippa islandica)

status: Public on Apr 20 2025

organism: Rorippa islandica


title: Illumina NovaSeq X (Rorippa pyrenaica)

organism: Rorippa pyrenaica


title: Illumina NovaSeq X (Adeno-associated virus 9)

status: Public on Apr 18 2025

organism: Adeno-associated virus 9


title: Illumina NovaSeq 6000 (Lepeophtheirus salmonis)

organism: Lepeophtheirus salmonis


title: Illumina HiSeq 2500 (Scatophagus argus)

status: Public on Apr 17 2025

organism: Scatophagus argus


title: Complete Genomics (Oryctolagus cuniculus)

organism: Oryctolagus cuniculus


title: DNBSEQ-T7 (Apis mellifera)

organism: Apis mellifera


title: Streptococcus mutans UA159 expression 8X15K microarray(KC)

city: Rockville

first: Panos

last: Pan

state: MD

address: 9430 Key West Avenue

institute: Arraystar Inc.

organism: Streptococcus mutans UA159

manufacture_protocol: see manufacturer's web site at https://www.agilent.com


title: Xenium In Situ Analyzer: Ambystoma mexicanum

status: Public on Apr 16 2025

city: Bar Harbor

first: Prayag

last: Murawala

state: ME

address: 159 Old Bar Harbor Rd, Bar Harbor, ME 04609

institute: MDI Biological Laboratory

organism: Ambystoma mexicanum

distribution: commercial


title: Illumina HiSeq 1500 (Rhodococcus opacus)

organism: Rhodococcus opacus


title: Illumina NovaSeq X Plus (Candidozyma auris)

organism: Candidozyma auris


title: Illumina NovaSeq 6000 (Thermococcus sp. AM4)

organism: Thermococcus sp. AM4


title: Illumina HiSeq 1500 (Acidithiobacillus ferrooxidans)

status: Public on Apr 15 2025

organism: Acidithiobacillus ferrooxidans


title: Illumina NovaSeq 6000 (Schizothorax plagiostomus)

organism: Schizothorax plagiostomus


title: Illumina NovaSeq X (Candida albicans SC5314)

organism: Candida albicans SC5314


title: Illumina NovaSeq 6000 (Schizosaccharomyces pombe 972h-)

organism: Schizosaccharomyces pombe 972h-


title: Agilent-084163 Am400k_v2

description:
Axolotl 400k using assembly 3.1, second version of 400k, 01.07.2016

Arrays of this design have barcodes that begin with 16084163 or 2584163.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina NextSeq 500 (Hanseniaspora uvarum)

status: Public on Apr 11 2025

organism: Hanseniaspora uvarum


title: Illumina NovaSeq X Plus (Stenotrophomonas maltophilia K279a)

status: Public on Apr 10 2025

organism: Stenotrophomonas maltophilia K279a


title: Illumina HiSeq 2500 (Quercus robur)

organism: Quercus robur


title: Duke/Gordan_8x15k_Universal_BulykLab_AMADID#015803

city: Iowa City

first: Bin

last: He

email: emptyhb@gmail.com, bin-he@uiowa.edu

state: IA

address: 129 East Jefferson St., Biology Building 450

department: Biology

institute: the University of Iowa

organism: synthetic construct

manufacture_protocol: In situ oligosynthesized array with synthetic sequences covering all possible 9mers


title: Illumina NovaSeq 6000 (Akebia trifoliata)

status: Public on Apr 09 2025

organism: Akebia trifoliata


title: Protein Microarray (spotted Outer Membrane Vesicles(OMVs) of E. coli)

status: Public on Apr 08 2025

city: Siena

first: Viola

last: Viviani

address: Via Fiorentina, 1

country: Italy

institute: GSK

organism: Escherichia coli

technology: spotted peptide or protein

distribution: non-commercial

manufacturer: Molecular Biology and Bacteriology lab, GSK, Siena

manufacture_protocol: Recombinant E. coli GMMA a  were prepared at 1 mg/ml or 0,5mg/ml in 20% glycerol and then serially diluted in 20% glycerol (step-2 dilutions).  Samples were transferred into 384-well plates. Two droplets of 0.1 nL protein solution was deposited per spot on nitrocellulose-coated slides (FAST slides, Maine Manufacturing) using the non-contact printer Marathon Argus Spotter (Arrayjet). Printing was performed in a cabinet with controlled humidity and temperature (50-55% and 18°C, respectively). Each protein was printed in replicates on each slide. Printed protein microarrays were kept at room temperature for 5 hours, dried under a stream of nitrogen and store at 4°C. Only the highest concentration of the vesicles was included in the final dataset.


title: Revio (synthetic construct)


title: Illumina NovaSeq X Plus (Cricetulus griseus)

organism: Cricetulus griseus


title: Illumina NovaSeq X Plus (Mycobacterium tuberculosis)

organism: Mycobacterium tuberculosis


title: Illumina NovaSeq 6000 (human skin metagenome)

organism: human skin metagenome


title: PromethION (Cucumber mosaic virus)

status: Public on Apr 07 2025

organism: Cucumber mosaic virus


title: MGISEQ-2000RS (Solanum lycopersicum)

organism: Solanum lycopersicum


title: NextSeq 2000 (Rhodotorula toruloides)

organism: Rhodotorula toruloides


title: NextSeq 550 (Schmidtea mediterranea)

organism: Schmidtea mediterranea


title: Illumina HiSeq 1500 (Macaca nemestrina)

organism: Macaca nemestrina


title: Element AVITI (Flagellimonas taeanensis)

organism: Flagellimonas taeanensis


title: Sequel IIe (Schmidtea mediterranea)

status: Public on Apr 14 2025


title: Sequel II (Schmidtea mediterranea)


title: Illumina NovaSeq X Plus (Salmo salar)

status: Public on Apr 03 2025

organism: Salmo salar


title: Illumina NovaSeq X Plus (Homo sapiens; Human alphaherpesvirus 1)

status: Public on Apr 02 2025

organism:
Homo sapiens
Human alphaherpesvirus 1


title: Illumina NovaSeq X (Stenotrophomonas maltophilia)

organism: Stenotrophomonas maltophilia


title: Illumina NovaSeq 6000 (Saccharomyces pastorianus)

organism: Saccharomyces pastorianus


title: Illumina NovaSeq 6000 (Schistosoma japonicum)

organism: Schistosoma japonicum


title: DNBSEQ-G400 (Candidozyma auris)

organism: Candidozyma auris


title: Illumina HiSeq 2000 (Magallana gigas)

organism: Magallana gigas


title: Illumina HiSeq 4000 (Orestias ascotanensis)

organism: Orestias ascotanensis


title: Protein Microarray (spotted purified recombinant proteins)

organism: Neisseria meningitidis

description: The proteins listed in the "recombinant chip" have already been published in: Viviani, V., Fantoni, A., Tomei, S. et al. OpcA and PorB are novel bactericidal antigens of the 4CMenB vaccine in mice and humans. npj Vaccines 8, 54 (2023). https://doi.org/10.1038/s41541-023-00651-9

manufacture_protocol: Purified recombinant proteins were diluted at final concentration of 0.5 mg/ml in 40% glycerol and transferred into 384-well plates. Two droplets of 0.1 nL protein solution was deposited per spot on nitrocellulose-coated slides (FAST slides, Maine Manufacturing) using the non-contact printer Marathon Argus Spotter (Arrayjet). Printing was performed in a cabinet with controlled humidity and temperature (50-55% and 18°C, respectively). Each protein was printed in replicates on each slide. Printed protein microarrays were kept at room temperature for 5 hours, dried under a stream of nitrogen and store at 4°C.


title: Agilent-087176 Pho4OrthologsV1 [UIowa/LFS_HBZ_Pho4_Cgla_and_Scer_Nov2022]

organism:
Saccharomyces cerevisiae
Nakaseomyces glabratus

description:
In situ oligosynthesized array with synthetic sequences that target Pho4 putative binding sites in genomic context in both S. cerevisiae and C. glabrata genomes
designed by Lindsey Snyder genomic context Pho4 in Sc/Cg genome

Arrays of this design have barcodes that begin with 16087176 or 2587176.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NovaSeq X Plus (Candida albicans SC5314)

status: Public on Apr 01 2025

organism: Candida albicans SC5314


title: NanoString nCounter Tumor Signaling 360 Panel

city: Baton Rouge

first: Tammy

middle: R

last: Dugas

state: LA

address: Skip Bertman Drive

department: Comparative Biomedical Sciences

institute: LSU School of Veterinary Medicine

organism: Rattus norvegicus


title: PromethION (Clostridioides difficile)

organism: Clostridioides difficile


title: Illumina NovaSeq 6000 (Methylorubrum extorquens)

organism: Methylorubrum extorquens


title: Illumina NovaSeq 6000 (Phytophthora capsici)

organism: Phytophthora capsici


title: MinION (Clostridioides difficile)


title: Illumina NovaSeq 6000 (Paenarthrobacter sp. TA1.8)

organism: Paenarthrobacter sp. TA1.8


title: NextSeq 2000 (Lactiplantibacillus plantarum)

organism: Lactiplantibacillus plantarum


title: Protein Microarray (spotted purified native Outer Membrane Vesicles (OMVs) from Neisseria gonorrhoeae)

organism: Neisseria gonorrhoeae

manufacture_protocol: Purified OMVs were prepared at 0,5 mg/ml in 20% glycerol and then serially diluted in 20% glycerol (step-2 dilutions). Samples were transferred into 384-well plates. Two droplets of 0.1 nL protein solution was deposited per spot on nitrocellulose-coated slides (FAST slides, Maine Manufacturing) using the non-contact printer Marathon Argus Spotter (Arrayjet). Printing was performed in a cabinet with controlled humidity and temperature (50-55% and 18°C, respectively). Each protein was printed in replicates on each slide. Printed protein microarrays were kept at room temperature for 5 hours, dried under a stream of nitrogen and store at 4°C. Only the 0,25mg/ml concentration of the vesicles was included in the final dataset.


title: Protein Microarray (spotted purified native Outer Membrane Vesicles (OMVs) from Neisseria meningitidis)

manufacture_protocol: Purified OMVs were diluted at final concentration of 1mg/ml or 0,5mg/ml in 40% glycerol and transferred into 384-well plates. Two droplets of 0.1 nL protein solution was deposited per spot on nitrocellulose-coated slides (FAST slides, Maine Manufacturing) using the non-contact printer Marathon Argus Spotter (Arrayjet). Printing was performed in a cabinet with controlled humidity and temperature (50-55% and 18°C, respectively). Each protein was printed in replicates on each slide. Printed protein microarrays were kept at room temperature for 5 hours, dried under a stream of nitrogen and store at 4°C. Only the highest concentration of the vesicles was included in the final dataset.


title: NextSeq 550 (Acomys)

status: Public on Apr 04 2025

organism: Acomys


title: Illumina NovaSeq 6000 (Acomys)


title: Illumina NextSeq 500 (Mus musculus; Salmonella enterica)

organism:
Mus musculus
Salmonella enterica


title: Element AVITI (Escherichia coli)

organism: Escherichia coli


title: 4PLEX Medicago

status: Public on Jan 31 2021

city: Gif sur Yvette

first: Véronique

last: BRUNAUD

address: avenue des sciences

country: France

institute: INRAE

organism: Medicago truncatula

description:
Strand:Forward-1 oligo/target sequence cDNA, with technical duplicate:83 029 forward probes + 108 controls
contributor: Ludivine Soubigou-Taconnat, Véronique Brunaud

manufacture_protocol: see manufacturer's web site at http://www.agilent.com


title: NextSeq 1000 (Gallus gallus)

organism: Gallus gallus


title: 4PLEX_BRACHY_066852

status: Public on Sep 28 2019

organism: Brachypodium distachyon

description:
31651 oligonucleotides duplicated on cDNA,forward strand
contributors:

first: S

last: Pateyron

first: V

last: Brunaud


title: INRA-CNRS-UEVE Arabidopsis thaliana 73K CATMAv6-HD12 [100701_Athal_CATMA6_SB_exp]

status: Public on Jun 23 2012

organism: Arabidopsis thaliana

description:
The CATMAv6-HD12 array contains 73228 oligos in forward and reverse strands tagging TAIRv8 gene prediction (31227 oligos including 476 Chloro/mito probes) and some specific EUGENE genes (1289). In addition, we including oligos corresponding to repeat_element (5352), miRNA (658) and 36 human controls oligos.

**Please note that the triplex slide of this platform is represented in GPL17404 [120228_Athal_CATMA62_AA_exp].

first: Sébastien

last: Aubourg

first: Sandrine

last: Balzergue

first: Sandra

last: Dérozier

first: Marie-Laure

last: Martin-Magniette


title: 4PLEX_Tomato

status: Public on Jun 03 2015

organism: Solanum lycopersicum

description: 67826 Probes designed in genome and duplicated: 33913 forward and 33913 reverse (1 oligo by sequence) + 108  probes corresponding to control in triplicate.

first: Jean-Philippe

last: Tamby


title: Custom NimbleGen A. thaliana ChIP-chip tiling design AT7v2.2

status: Public on Sep 16 2010

description: Tiling array AT7v2.2. ChIP-chip design of Arabidopsis 7.0 whole genome, with 165 bp spacing.  This design is a refinement of AT7v1  by replacing the existing chrM and chrC probes with a straight tiling of those chromosomes.  Probes split between the 2 designs, with every-other probe in each array.

first: Francois

last: Roudier

first: Vincent

last: Colot

first: Sebastien

first: Caroline

last: Bérard


title: Custom NimbleGen A. thaliana ChIP-chip tiling design AT7v1.2

description: Tiling array NimbleGen AT7v1.2. ChIP-chip design of Arabidopsis 7.0 whole genome, with 165 bp spacing.Array with one chamber but 2 arrays used for one sample (AT7v1.1 and v1.2).


title: URGV Arabidopsis thaliana CHROMO4_2 array

status: Public on Aug 11 2010

technology: spotted DNA/cDNA

description: The entire TIGR4 Arabidopsis thaliana ec. Col chromosome 4 assembly was used to design a genomic tiling microarray. This ~18.6 Mb sequence represented on the microarray starts downstream of the nucleolar organizing region (NOR) comprising the 5’ terminus of the chromosome. Notably, it contains several megabases of pericentromeric heterochromatin. In the microarray design, annotation was intentionally ignored, thus ensuring that repeated and unique sequences were equally represented. PCR primer pairs were selected using the Primer3 software. Probe selection was first accomplished by BLASTN analysis of sequential 100-bp windows of sequence along chromosome 4 against the whole genome to discriminate between unique and repeated DNA. Whenever a window gave at least one hit with 85% identity elsewhere in the genome, that window was marked as repeated, or unique otherwise. This information was then used to define repeated and unique segments of at least 300bp along the chromosome, as follows. Repeat segments were composed of successive repeat windows, possibly interrupted by series of contiguous unique windows spanning less than 300bp in each case. Conversely, unique segments were composed of successive unique windows, never interrupted by more than 300bp of contiguous repeat windows. Series of alternate unique and repeated windows were treated as repeat segments. Within each repeated or unique segment, PCR primer pairs were then selected using the Primer3 software and a routine that ensured maximum coverage of the segment and limited overlap between successive probes. Briefly, primer pairs were designed from both ends of the segment, considering sequential 1.2 kb windows, amplicon sizes ranging from 850 bp to 1.2 kb (optimum 1 kb) and primers (19-23 nt each, optimum 21 nt, 40-60% GC) with similar melting temperatures in the 57°C63°C range (optimum 60°C). Each new 1.2 kb window was positioned 50 bp within the end of the preceding amplicon. Successive amplicons could therefore overlap by up to 50 bp or be separated by up to 250 bp. When no primer pair was found in a given window, window size was increased to 1.4 kb, and if still unsuccessful, amplicons were finally designed using the forward and reverse primers of the upstream and downstream amplicons, respectively. When the last (central) window of a segment was less than 1.2kb but more than 300bp, primer pair selection was carried out by considering the actual size of that window plus 50bp on either side. Using this approach, 21,405 amplicons were designed with an average size of ~950bp. An additional 356 amplicons were designed that cover 36 genes of interest and neighboring sequences located on the other 4 chromosomes. Most amplicons were produced using BAC clones as templates, and all amplicons were verified by gel electropheresis.


title: Custom NimbleGen A. thaliana ChIP-chip tiling array [HD2.3X]

status: Public on Oct 02 2010

description: Tiling array HD2.3X. ChIP-chip design of Arabidopsis 7.0 whole genome, with 175 bp spacing.  This design is a merge of GPL10911 and GPL10918 (AT7v2) with 3 chambers of 711320 spots on a single slide.

last: Berard


title: Chromochip Arabidopsis thaliana 21.7K CHROMO4_1

status: Public on Sep 10 2010

first: Agnes

last: Yu


title: Custom NimbleGen A. thaliana ChIP-chip tiling design AT7v2.1

status: Public on Sep 15 2010

description: Tiling array AT7v2.1. ChIP-chip design of Arabidopsis 7.0 whole genome, with 165 bp spacing.  This design is a refinement of AT7v1 by replacing the existing chrM and chrC probes with a straight tiling of those chromosomes.  Probes split between the 2 designs, with every-other probe in each array.


title: Custom NimbleGen A. thaliana ChIP-chip tiling design AT7v1.1

description: Tiling array NimbleGen AT7v1.1. ChIP-chip design of Arabidopsis 7.0 whole genome, with 165 bp spacing. Array with one chamber but 2 arrays used for one sample (AT7v1.1 and v1.2).