title: MGH-Nanostring CAR-T Characterization

status: Public on May 30 2025

city: Charlestown

first: Michael

middle: C

last: Kann

state: MA

address: 149 13th Street

department: CCR

country: USA

institute: MGH

organism: Homo sapiens

technology: in situ oligonucleotide

distribution: custom-commercial


title: BGISEQ-500 (Anser cygnoides)

last: GEO

organism: Anser cygnoides

technology: high-throughput sequencing

distribution: virtual


title: DNBSEQ-T7 (Siniperca chuatsi)

status: Public on May 29 2025

organism: Siniperca chuatsi


title: BGISEQ-500 (Struthio camelus australis)

organism: Struthio camelus australis


title: BGISEQ-500 (Coturnix japonica)

organism: Coturnix japonica


title: NanoString nCounter Custom CodeSet for Myocardial Infarction

status: Public on May 28 2025

city: La Jolla

first: Karen

last: Christman

state: California

address: 2880 Torrey Pines Scenic Drive

department: Shu Chien-Gene Lay Department of Bioengineering

institute: University of California San Diego

organism: Rattus norvegicus

technology: other

manufacture_protocol: See manufacturer's website (www.nanostring.com).


title: Sequel (Eriocheir sinensis)

organism: Eriocheir sinensis


title: Illumina NovaSeq 6000 (Chironomus dilutus)

organism: Chironomus dilutus


title: Illumina HiSeq 4000 (Fusarium oxysporum f. sp. lycopersici)

organism: Fusarium oxysporum f. sp. lycopersici


title: Illumina MiSeq (soil metagenome)

organism: soil metagenome


title: Illumina NovaSeq 6000 (Vigna radiata var. sublobata)

organism: Vigna radiata var. sublobata


title: Illumina NovaSeq 6000 (Vigna radiata var. radiata)

organism: Vigna radiata var. radiata


title: Illumina NovaSeq X Plus (Sinorhizobium meliloti)

status: Public on May 27 2025

organism: Sinorhizobium meliloti


title: Illumina NovaSeq 6000 (Homo sapiens; Ovis aries)

organism:
Homo sapiens
Ovis aries


title: Element AVITI (Cavia porcellus)

organism: Cavia porcellus


title: MWG E. coli K12 Array

city: Cuernavaca

first: Gilberto

last: Pérez Morales

state: Morelos

address: Avenida Universidad 2001, Colonia Chamilpa

department: Cellular Engineering Department

country: Mexico

institute: Instituto de Biotecnología - Universidad Nacional Autónoma de México

organism: Escherichia coli K-12

technology: spotted oligonucleotide

manufacture_protocol: see manufacturer's web site


title: Illumina NovaSeq X Plus (Escherichia coli str. K-12 substr. MG1655)


title: Illumina HiSeq 2500 (Pisolithus microcarpus)

status: Public on May 23 2025

organism: Pisolithus microcarpus


title: GenoLab M (Drosophila melanogaster)

organism: Drosophila melanogaster


title: Illumina HiSeq 2500 (Petunia axillaris)

organism: Petunia axillaris


title: Illumina HiSeq 2500 (Petunia integrifolia subsp. inflata)

organism: Petunia integrifolia subsp. inflata


title: Illumina NovaSeq X (Cunninghamia lanceolata)

organism: Cunninghamia lanceolata


title: Illumina NovaSeq X (Sigmodon hispidus)

status: Public on May 22 2025

organism: Sigmodon hispidus


title: Illumina NovaSeq 6000 (Erythranthe nudata)

status: Public on May 21 2025

organism: Erythranthe nudata


title: BGISEQ-500 (Salmonella enterica subsp. enterica)

organism: Salmonella enterica subsp. enterica


title: NanoString nCounter NanoCMSer CodeSet1 [Medema_1_C6881, n6_vDV1]

city: Amsterdam

first: Arezo

last: Torang

address: Meibergdreef 9

country: Netherlands

institute: Amsterdam UMC

organism: Homo sapiens

manufacture_protocol: See manufacturer's website (www.nanostring.com)


title: Element AVITI (Trypanosoma brucei)

status: Public on May 20 2025

organism: Trypanosoma brucei


title: Illumina NovaSeq X Plus (Arabidopsis thaliana; Brachypodium distachyon; Capsella rubella; Panicum hallii; Sorghum bicolor; Thlaspi arvense)

status: Public on May 19 2025

organism:
Arabidopsis thaliana
Sorghum bicolor
Thlaspi arvense
Brachypodium distachyon
Capsella rubella
Panicum hallii


title: Illumina Infinium ImmunoArray 24v2-0

city: New York

first: Abhimanyu

last: Amarnani

state: NY

address: 435 E 30th Street. 4th floor

institute: New York University

technology: oligonucleotide beads

distribution: commercial

manufacture_protocol: See manufacturer's website


title: Nanostring nCounter Mouse PanCancer Immune Profiling Panel with custom code set [NS_Mm_CancerImm_C3400+PLS_MXC_C10537]

city: Duarte

first: Nancy

middle: Danielle

last: Ebelt

state: CA

address: 1500 E Duarte Rd

department: Immuno-Oncology

institute: Beckman Research Institute of City of Hope

organism: Mus musculus


title: NextSeq 2000 (Salmonella enterica subsp. enterica serovar Agona)


title: Illumina NovaSeq X Plus (Arabidopsis lyrata; Arabidopsis thaliana; Brassica oleracea; Capsella rubella)

organism:
Arabidopsis thaliana
Brassica oleracea
Arabidopsis lyrata
Capsella rubella


title: Illumina NovaSeq X Plus (Brachypodium distachyon; Panicum hallii; Sorghum bicolor)

organism:
Sorghum bicolor
Brachypodium distachyon
Panicum hallii


title: Illumina NovaSeq 6000 (Arabidopsis lyrata; Arabidopsis thaliana; Brassica oleracea; Capsella rubella)


title: MinION (Sus scrofa domesticus)

status: Public on May 16 2025

organism: Sus scrofa domesticus


title: DNBSEQ-G400 (Homo sapiens; Human alphaherpesvirus 1)

organism:
Homo sapiens
Human alphaherpesvirus 1


title: Illumina NovaSeq 6000 (Escherichia coli DH5[alpha])

organism: Escherichia coli DH5[alpha]


title: Illumina NovaSeq X Plus (Sorghum bicolor)

organism: Sorghum bicolor


title: Illumina NovaSeq 6000 (Arabidopsis thaliana; Brassica oleracea; Camelina sativa)

organism:
Arabidopsis thaliana
Brassica oleracea
Camelina sativa


title: Illumina NovaSeq X (Auxenochlorella protothecoides)

organism: Auxenochlorella protothecoides


title: NextSeq 2000 (Homo sapiens/Mus musculus xenograft)

organism: Homo sapiens/Mus musculus xenograft


title: Illumina HiSeq 3000 (Cryptococcus neoformans)

organism: Cryptococcus neoformans


title: DNBSEQ-T7 (Candida albicans)

status: Public on May 15 2025

organism: Candida albicans


title: Illumina NovaSeq 6000 (Cryptococcus neoformans H99)

organism: Cryptococcus neoformans H99


title: Illumina NovaSeq 6000 (Irpex lacteus)

organism: Irpex lacteus


title: Illumina NovaSeq 6000 (Dermacentor andersoni)

status: Public on May 13 2025

organism: Dermacentor andersoni


title: Illumina NovaSeq X Plus (Brassica rapa)

status: Public on May 14 2025

organism: Brassica rapa


title: Illumina NovaSeq X (Komagataella phaffii)

organism: Komagataella phaffii


title: Illumina NovaSeq X (Histoplasma ohiense (nom. inval.))

status: Public on May 12 2025

organism: Histoplasma ohiense


title: Illumina NovaSeq 6000 (Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130)


title: DNBSEQ-G400 (Mesocricetus auratus)

organism: Mesocricetus auratus


title: Illumina NovaSeq 6000 (Cupriavidus necator)

organism: Cupriavidus necator


title: Illumina HiSeq 4000 (Miniopterus natalensis)

organism: Miniopterus natalensis


title: Illumina NovaSeq 6000 (Streptococcus dysgalactiae)

status: Public on May 09 2025

organism: Streptococcus dysgalactiae


title: Illumina NovaSeq 6000 (Aspergillus oryzae)

organism: Aspergillus oryzae


title: Illumina NovaSeq X Plus (Gasterosteus aculeatus)

organism: Gasterosteus aculeatus


title: Illumina NovaSeq 6000 (Limosilactobacillus reuteri)

organism: Limosilactobacillus reuteri


title: Illumina HiSeq 2500 (Miniopterus natalensis)


title: Illumina NovaSeq X (Zymoseptoria tritici)

status: Public on May 08 2025

organism: Zymoseptoria tritici


title: PromethION (Felis catus)

organism: Felis catus


title: Illumina NovaSeq X Plus (Escherichia coli O157:H7)

status: Public on May 07 2025

organism: Escherichia coli O157:H7


title: Illumina NovaSeq 6000 (Spizellomyces punctatus)

status: Public on May 06 2025

organism: Spizellomyces punctatus


title: Illumina HiSeq 2500 (Cannabis sativa)

status: Public on May 05 2025

organism: Cannabis sativa


title: Illumina NextSeq 500 (Bifidobacterium adolescentis)

organism: Bifidobacterium adolescentis


title: Luminex xMAP Multi-Analyte Profiling ProcartaPlex 65 plex

city: Portland

first: Lisa

last: Coussens

state: OR

address: 3181 SW Sam Jackson Park Rd

institute: Oregon Health and Science University

organism: Homo sapiens

manufacture_protocol: Vortex capture beads for 30 sec. Add 50 uL of capture beads to each well. Remove liquid. Add 25 uL of Universal Assay Buffer, then add 25 uL of standards, controls, or samples. For background wells, add 50 uL of 1X UAB. Seal plate and incubate with shaking at room temp for 2 hr. Add 25 uL of Detection Antibody Mix (1X). Seal the plate and incubate with shaking at room temp for 30 min. Wash plate twice. Add 50 uL of Streptavidin-PE. Seal the plate and incubate with shaking at room temp for 30 min. Wash plate twice. Add 120 uL of Reading Buffer. Seal the plate and shake at room temp for 5 min. Aquire data on xMAP system.


title: Illumina NovaSeq 6000 (Aplysia californica)

organism: Aplysia californica


title: Illumina NextSeq 500 (Agathobacter rectalis)

organism: Agathobacter rectalis


title: NextSeq 1000 (Staphylococcus aureus)

organism: Staphylococcus aureus


title: Illumina NovaSeq 6000 (Fragaria x ananassa)

organism: Fragaria x ananassa


title: Illumina NovaSeq 6000 (Lolium arundinaceum)

organism: Lolium arundinaceum


title: Agilent-057570 SurePrint G3 Human GE 8x60K Microarray (Feature Number version)

city: Liverpool

first: Jamie

last: Soul

address: Crown St

department: ISMIB

country: United Kingdom

institute: University of Liverpool

manufacture_protocol: Agilent 60-mer SurePrint technology. See manufacturer's web site at http://www.agilent.com/


title: Illumina NextSeq 500 (Bifidobacterium catenulatum)

organism: Bifidobacterium catenulatum


title: Illumina NextSeq 500 (Bacteroides uniformis)

organism: Bacteroides uniformis


title: Illumina NovaSeq 6000 (Peromyscus leucopus)

status: Public on May 02 2025

organism: Peromyscus leucopus


title: DNBSEQ-T7 (Mus)

organism: Mus


title: Illumina NovaSeq X Plus (Streptococcus mutans UA159)

organism: Streptococcus mutans UA159


title: BGISEQ-500 (Saccharomycotina)

organism: Saccharomycotina


title: Illumina NovaSeq 6000 (Phyllachora maydis; Zea mays)

organism:
Zea mays
Phyllachora maydis


title: Affymetrix Oryza sativa Axiom_OsSNPnks

status: Public on May 01 2025

city: New Delhi

first: Tapan

last: Mondal

state: DELHI

address: LBS Centre, Pusa

country: India

institute: ICAR-National Institute for Plant Biotechnology

organism: Oryza sativa


title: Resolve Biosciences Molecular Cartography customized Mouse liver platform

city: Pittsburgh

first: Shuchang

last: Liu

state: PA

address: 203 Lothrop Street

institute: University of Pittsburgh

organism: Mus musculus

manufacture_protocol: Protocol provided and performed by resolve bioscience (https://your.resolve-biosciences.com/), with reference paper PMID: 35021063


title: Infinium Mouse Methylation MM285 BeadChip

status: Public on Apr 28 2025

city: San Diego

last: Illumina Inc.

address: 9885 Towne Centre Drive

institute: Illumina Inc.


title: [CytoScanOptima_Array] Affymetrix CytoScan Optima Array

status: Public on Sep 07 2022

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.


title: Pseudomonas fluorescens Pf29Arp microarray

status: Public on Oct 01 2014

city: Champenoux

first: Annegret

last: Kohler

address: Centre Grand Est Nancy

country: France

institute: INRAE

organism: Pseudomonas fluorescens

technology: spotted DNA/cDNA

distribution: non-commercial

manufacture_protocol:
A genomic library containing 14208 clones was PCR-amplified. Amplified DNA products of the 14 208 clones were purified on SephadexTM G-50 superfine (GE Healthcare, Little Chalfont, UK) and multiscreen filter plates (Millipore, Bedford, MA, USA) and then resuspended in 20 μl of spotting buffer (1.5 m betaine, 3X SSC). The PCR efficiency was around 85%, and 93% of the amplified clones had a DNA insert, with 1 kbp average size. We amplified 11 400 PCR fragments, theoretically representing 80% of the genome. DNA products were printed in simplicate on Corning UltraGAPS II slides (Corning, Corning,NY, USA) by a Lucidea spotter (Amersham Biosciences, Piscataway, NJ, USA) at the BioGenouest transcriptomic facilities (Nantes, France)
Pseudomonas fluorescens Pf29Arp shotgun DNA microarray


title: INRA 4-plex Laccaria bicolor whole genome expression array

status: Public on Dec 15 2011

organism: Laccaria bicolor S238N-H82

description: This is a condensed platform of the full array which has probes designed from gene models taken from the Joint Genome Institute Laccaria bicolor genome sequence version 1.0

first: Emilie

last: Tisserant

first: Benoit

last: Hilselberger

first: Francis

last: Martin

manufacture_protocol: Propriety in situ oligonucleotide synthesis


title: NimbleGen Phanerochaete chrysosporium 12-plex exon expression array

status: Public on Aug 12 2014

organism: Phanerodontia chrysosporium

description: This is a condensed platform of the full array which has probes designed from gene models taken from the Joint Genome Institute (http://genome.jgi-psf.org/Phchr1/Phchr1.info.html)


title: Glomus intraradices EST expression array

status: Public on Aug 01 2011

organism: Rhizophagus intraradices

description: This is a condensed platform of the full array which has probes designed from a robust set of non-redundant virtual transcripts (NRVT) (25,906, ~20Mb) transcribed in quiescent and germinated spores, extraradical mycelium (ERM) and symbiotic roots of Glomus intraradices produced by Sanger- and 454-sequencing. The G. intraradices EST expression array (4 x 72K) manufactured by Roche NimbleGen Systems Limited (Madison, WI) contained three independent, non identical, 60-mer probes per sequence. Included in the oligoarray were 22,402 G. intraradices non-redundant transcripts, 5785 random 60-mer control probes and labeling controls.


title: NimbleGen Pseudomonas fluorescens BBc6R8 array [080718_Pfluor_Bbc6_expr]

status: Public on Aug 01 2012

organism: Pseudomonas fluorescens BBc6R8

description:
Design Name: 080718_Pfluor_Bbc6_expr
Design ID: 7919

Native array description file: 080718_Pfluor_Bbc6_expr.ndf
Native array description file: 080718_Pfluor_Bbc6_expr.ngd

This is a condensed Platform of the full array which has probes designed from gene models of Pseudomonas fluorescens BBc6R8.

first: Aurelie

last: Deveau

first: Pascale

last: Frey-Klett

manufacture_protocol: Propriety in situ oligonucleotide synthesis.


title: Nimblegen Collimonas fungivorans Ter331 array

status: Public on Jun 11 2014

organism: Collimonas fungivorans


title: NimbleGen Cenococcum geophilum-Pinus sylvestris mixed 12-plex expression array [100616_CG-Pinus_EXP]

status: Public on Aug 01 2016

organism:
Pinus sylvestris
Cenococcum geophilum

description:
This is a condensed platform of the full array which has probes designed from Cenococcum geophilum and Pinus sylvestris 454 sequences.
Native array description file: 100616_CG-Pinus_EXP.ndf
Design name: 100616_CG-Pinus_EXP
Design ID: 532363


title: Heterobasidion annosum 12K whole genome expression array

status: Public on Mar 15 2012

organism: Heterobasidion annosum

first: Åke

last: Olson

first: Jan

last: Stenlid


title: Populus trichocarpa 12-plex whole genome expression array

status: Public on Jun 01 2011

organism: Populus trichocarpa

description:
This is a condensed platform of the full array which has probes designed
from gene models taken from Populus trichocarpa genome v2 ; Phytozome 5.0


title: INRA Melampsora larici-populina whole-genome expression array

status: Public on Jul 22 2010

organism: Melampsora laricis-populina

description:
The Melampsora larici-populina custom-exon expression array (4 x 72K) manufactured by Roche NimbleGen Systems Limited (Madison, WI) contains four independent, nonidentical, 60-mer probes per sequence. Included in the oligoarray are 16,599 Joint Genome Institute (JGI)-annotated gene models, 376 user-annotated gene models, 395 additional putative gene models identified by Eugene prediction, and 315 putative gene models identified by using 454 transcripts and 69 repeat elements. In addition, 1,063 random 60-mer control probes and labelling controls are present on the array. For 440 gene models, technical duplicates are included on the array.

This is a condensed platform of the full array which has probes designed from gene models taken from the Joint Genome Institute (JGI) Melampsora larici-populina genome sequence version 1.0 (http://genome.jgi-psf.org/Mellp1/Mellp1.home.html ).

first: Sébastien

last: Duplessis

first: Yao-Cheng

last: Lin

first: Stéphane

last: Hacquard


title: INRA Laccaria bicolor whole genome expression array 45K version 1

status: Public on Feb 01 2008

first: Frédéric

last: Duchaussoy


title: Serpula lacrymans S7.9 whole genome expression array

status: Public on Jul 01 2011

organism: Serpula lacrymans var. lacrymans S7.9

description:
This is a condensed platform of the full array which has probes designed from gene models taken from the Joint genome institute Serpula lacrymans S7.9 genome
sequence version 1.0

first: Nils

last: Högberg

first: Anna

last: Rosling

first: Katarina

last: Ihrmark


title: Agilent-027120 Agaricus bisporus H97 whole genome expression array

status: Public on Oct 01 2012

organism: Agaricus bisporus var. bisporus H97

description:
Arrays of this design have barcodes that begin with 16027120 or 2527120.

This is a condensed platform of the full array, which has probes designed from gene models taken from the Joint Genome Institute Agaricus bisporus H97 genome sequence version 2.0 (http://genome.jgi.doe.gov/Agabi_varbisH97_2/Agabi_varbisH97_2.home.html).

Oligonucleotide sequences are available in the supplementary file 'GPL15836_027120_D_GEO_20100129_full_array.txt'.

first: Adam

middle: R

last: Baker

first: Kerry

middle: S

last: Burton

first: Mike

middle: P

last: Challen

first: Daniel

last: Eastwood

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/ .


title: INRA Tuber melanosporum 14.1K whole genome expression array

status: Public on Apr 01 2010

first: Annegret

last: Kohler

organism: Tuber melanosporum

description: This is a condensed platform of the full array which has probes designed from gene models taken from the Genoscope - Centre National de Séquençage Tuber melanosprum genome sequence version 1.0

first: Emmanuelle

last: Morin

first: Benoit

last: Hilselberger