title: MGISEQ-2000RS (Rattus)

status: Public on Sep 30 2025

last: GEO

country: USA

organism: Rattus

technology: high-throughput sequencing

distribution: virtual


title: Illumina NovaSeq X (Rattus)


title: NanoString Human GeoMx Immuno-oncology Protein Digital Spatial Profiling (DSP) Platform

city: Chapel Hill

first: Andrew

middle: B

last: Gladden

state: NC

address: 160 N. Medical Drive

department: Pathology & Laboratory Medicine

institute: The University of North Carolina at Chapel Hill

organism: Homo sapiens

technology: other

distribution: custom-commercial

manufacture_protocol: More information is available at nanostring.com


title: Illumina HiSeq 2500 (Nicotiana attenuata)

status: Public on Sep 29 2025

organism: Nicotiana attenuata


title: [Atdschip_expr] Affymetrix AGRONOMICS1 expression array (CDF: agronomics1_TAIR10_gene)

city: Meguro

first: Kei

last: Hiruma

state: Tokyo

address: 3-8-1 Komaba,

department: Life Sciences

country: Japan

institute: The University of Tokyo

organism: Arabidopsis thaliana

technology: in situ oligonucleotide

manufacture_protocol: see manufacturer's website; European AGRONOMICS project


title: Illumina NovaSeq X Plus (Bacteroides fragilis)

organism: Bacteroides fragilis


title: Single-Tube Custom TaqMan® Gene Expression Assays

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

technology: RT-PCR

description: PCR assay

manufacture_protocol: see manufacturer's website


title: NanoString nCounter Mouse Host Response custom plus panel [NU Atkinson Mouse v1.0]

city: Chicago

first: Blake

last: Gill

state: Illinois

address: 300 e superior st

department: Surgery

institute: Northwestern University

organism: Mus musculus

description:
NS_Mm_HostResponse_v1.0+PLS_UF_Atkinson_C10586
nCounter hybridization capture and reporter probes


title: Illumina NovaSeq X (Saccharomyces cerevisiae S288C)

organism: Saccharomyces cerevisiae S288C


title: Illumina NovaSeq 6000 (Candida tropicalis)

organism: Candida tropicalis


title: NextSeq 2000 (Lambdavirus lambda)

organism: Lambdavirus lambda


title: Illumina NovaSeq X Plus (Piscirickettsia salmonis)

status: Public on Sep 26 2025

organism: Piscirickettsia salmonis


title: Illumina Genome Analyzer (Oryctolagus cuniculus)

organism: Oryctolagus cuniculus


title: NextSeq 2000 (Arthrobacter sp. AZCC_0090)

organism: Arthrobacter sp. AZCC_0090


title: Illumina HiSeq 2500 (Sinapis alba)

status: Public on Sep 25 2025

organism: Sinapis alba


title: Illumina HiSeq 2500 (Brassica fruticulosa)

organism: Brassica fruticulosa


title: DNBSEQ-T7 (Streptomyces auratus)

organism: Streptomyces auratus


title: Illumina NovaSeq X Plus (Trachinotus blochii)

organism: Trachinotus blochii


title: Murine 20K long oligo array

status: Public on Sep 24 2025

city: guadalajara

first: angel

middle: omar

last: vazquez

address: SIERRA MOJADA 950

country: Mexico

institute: IBMMTG

technology: spotted oligonucleotide

distribution: non-commercial

manufacture_protocol: The manufacturer's protocol was followed as described in the following reference: DOI 10.3389/fbioe.2023.1085976.


title: Illumina NovaSeq X (Acomys dimidiatus)

status: Public on Sep 23 2025

organism: Acomys dimidiatus


title: Illumina NovaSeq X Plus (Nothobranchius furzeri)

organism: Nothobranchius furzeri


title: Olink Explore 3072

status: Public on Sep 22 2025

city: San Francisco

first: Jessica

last: Neely

state: California

address: 550 16th Street

department: Pediatrics

institute: UCSF

organism: Homo sapiens

manufacture_protocol: Proximity extension assay (PEA) technology merges an antibody-based immunoassay with the properties of polymerase chain reaction (PCR) to provide multiplexed proteomics measurements with a next-generation sequencing (NGS) readout. https://olink.com/products/olink-explore-3072-384


title: HTRTqPCR

city: Heidelberg

first: Dirk

last: Theile

address: Im Neuenheimer Feld 410

country: Germany

institute: Heidelberg University

description:
PCR assay
High-throughput Real-Time PCR analysis


title: Element AVITI (Nematostella vectensis)

organism: Nematostella vectensis


title: Illumina NovaSeq X Plus (Saccharomyces cerevisiae BY4741)

organism: Saccharomyces cerevisiae BY4741


title: Onso (Homo sapiens)


title: AccuTarget Human qPCR Screening (Pathway No. 60: Glucose Metabolism)

city: Cheongju

first: Hyo Youn

last: Jo

address: 1, Chungdae-ro, Seowon-gu, Cheongju-si, Chungcheongbuk-do

department: Veterinary medicine

country: South Korea

institute: Chungbuk National University

description:
AccuTarget Human qPCR Screening Kit (Pathway No. 60: Glucose Metabolism)
qPCR-based gene expression profiling using SYBR Green detection

manufacturer: Bioneer Corporation (Daejeon, Republic of Korea)

manufacture_protocol:
Lyophilized forward and reverse primers were designed according to MIQE guidelines and provided in 96-well plate format. Each well contains one primer set for a glucose metabolism-related target gene or a housekeeping gene. Primers were resuspended with nuclease-free water before use, and qPCR was performed with AccuPower? 2X GreenStar? qPCR Master Mix (Bioneer) under a two-step protocol (95 °C pre-denaturation, followed by 45 cycles of 95 °C denaturation and 58 °C annealing/extension).
https://www.bioneer.co.kr/literatures/manual/GeneExpressionAnalysis/AccuTarget_qPCR_Screening_Kit.pdf


title: NanoString CosMx SMI (Mus musculus)

description:
The methodology is described at He, S., Bhatt, R., Brown, C. et al. High-plex imaging of RNA and proteins at subcellular resolution in fixed tissue by spatial molecular imaging. Nat Biotechnol 40, 1794–1806 (2022) (https://doi.org/10.1038/s41587-022-01483-z) . Briefly, the Spatial Molecular Imager utilizes standard sample preparation methods typical for FISH or IHC on FFPE tissue sections, with the introduction of fluorescent bead-based fiducials that are fixed to the tissue to provide an optical reference for cyclic image acquisition and registration.
CosMx SMI is a high-plex in situ analysis platform to provide spatial multiomics with formalin-fixed paraffin-embedded (FFPE) and fresh frozen (FF) tissue samples at cellular and subcellular resolution. CosMx SMI is an integrated system with mature cyclic fluorescent in situ hybridization (FISH) chemistry, high-resolution imaging readout, interactive data analysis and visualization software.

manufacture_protocol: See manufacturer's website.


title: Illumina NovaSeq X Plus (Fusarium pseudograminearum)

organism: Fusarium pseudograminearum


title: Illumina NovaSeq 6000 (Alexandromys fortis)

status: Public on Sep 19 2025

organism: Alexandromys fortis


title: NextSeq 550 (Lagopus muta hyperborea)

organism: Lagopus muta hyperborea


title: NanoString Human V3 miRNA array (NS_H_miR_v3a)

manufacture_protocol: See manufacturer's website (www.nanostring.com)


title: DNBSEQ-G400 (Lagopus muta hyperborea)


title: Revio (Lagopus muta hyperborea)


title: Illumina NovaSeq 6000 (Pseudomonas syringae pv. tomato)

status: Public on Sep 18 2025

organism: Pseudomonas syringae pv. tomato


title: Illumina HiSeq 4000 (Citrus sinensis x Citrus trifoliata)

organism: Citrus sinensis x Citrus trifoliata


title: Explore HT

city: Seoul

first: Jae-ik

last: Oh

address: 101, Daehak-ro, Jongno-gu

department: Translational Medicine

institute: Seoul National University College of Medicine

manufacture_protocol: Samples and controls are transferred to one sample source plate and samples are diluted. High multiplexed PEATM probes, matched pairs of antibodies with unique DNA oligonucleotides, bind to their respective proteins in the plasma samples. Then oligonucleotides that are brought into proximity hybridize and are extedned using a DNA polymerase. The piece of DNA barcode that is created is then amplified by PCR. Unique sample indexes are added to every sample, to allow pooling of the DNA amplicons for all samples. Samples from the same dilution block are pooled together, resulting in one pool per dilution block, each containing 192 samples/controls. Each pool is purified using magnetic beads. The quality of each Olink Explore HT library is assessed through automated electrophoresis. The Olink Explore HT library is sequenced by NGS using Illumina platform. The relative concentration of each biomarker, based on mathced counts (the number of reads for each specific combination of sample and assay), is calculated using the Olink NPX Explore HT software.  https://7074596.fs1.hubspotusercontent-na1.net/hubfs/7074596/01-User%20Manuals%20for%20website/1293-olink-explore-ht-user-manual.pdf


title: Illumina MiSeq (Francisella hispaniensis)

status: Public on Sep 17 2025

organism: Francisella hispaniensis


title: PromethION (Ambystoma mexicanum)

organism: Ambystoma mexicanum


title: Illumina HiSeq 2000 (Aix galericulata)

organism: Aix galericulata


title: Illumina HiSeq 2000 (Mycobacterium)

organism: Mycobacterium


title: NextSeq 550 (Petunia x hybrida)

status: Public on Sep 16 2025

organism: Petunia x hybrida


title: Illumina Genome Analyzer (Hansenia forbesii)

organism: Hansenia forbesii


title: NextSeq 2000 (Zymoseptoria tritici)

organism: Zymoseptoria tritici


title: NextSeq 2000 (Cryptococcus neoformans)

organism: Cryptococcus neoformans


title: Illumina NovaSeq 6000 (Batrachocottus multiradiatus)

status: Public on Sep 15 2025

organism: Batrachocottus multiradiatus


title: Illumina NovaSeq 6000 (Batrachocottus nikolskii)

organism: Batrachocottus nikolskii


title: Illumina NovaSeq 6000 (Comephorus baikalensis)

organism: Comephorus baikalensis


title: Illumina NextSeq 500 (Chlamydomonas sp. RCC2488)

organism: Chlamydomonas sp. RCC2488


title: Illumina NovaSeq 6000 (Ficus carica)

organism: Ficus carica


title: Illumina NovaSeq 6000 (Tamias striatus)

organism: Tamias striatus


title: Illumina NovaSeq 6000 (Senecavirus A)

organism: Senecavirus A


title: Illumina NovaSeq 6000 (Cryptococcus deneoformans)

organism: Cryptococcus deneoformans


title: Illumina NovaSeq 6000 (Leymus chinensis)

organism: Leymus chinensis


title: Illumina NovaSeq X (Ceratopteris richardii)

status: Public on Sep 12 2025

organism: Ceratopteris richardii


title: Illumina NovaSeq X (Yarrowia lipolytica)

organism: Yarrowia lipolytica


title: DNBSEQ-T7 (synthetic construct)

organism: synthetic construct


title: Element AVITI (Caenorhabditis elegans)

status: Public on Sep 11 2025

organism: Caenorhabditis elegans


title: Ion GeneStudio S5 (Livoneca redmanii)

organism: Livoneca redmanii


title: Illumina NovaSeq 6000 (Acinetobacter venetianus; Shewanella oneidensis)

organism:
Acinetobacter venetianus
Shewanella oneidensis


title: MinION (Drosophila virilis)

organism: Drosophila virilis


title: Illumina HiSeq 3000 (Schistosoma mansoni)

organism: Schistosoma mansoni


title: Element AVITI (Sus scrofa)

organism: Sus scrofa


title: Illumina HiSeq 2000 (Thermus thermophilus HB27)

organism: Thermus thermophilus HB27


title: NextSeq 1000 (Canis lupus familiaris)

status: Public on Sep 09 2025

organism: Canis lupus familiaris


title: Illumina NovaSeq 6000 (Clostridioides difficile ATCC 43255; Mus musculus)

status: Public on Sep 10 2025

organism:
Mus musculus
Clostridioides difficile ATCC 43255


title: HiSeq X Ten (Nicotiana tabacum)

organism: Nicotiana tabacum


title: Illumina NovaSeq 6000 (Bacteroides thetaiotaomicron)

organism: Bacteroides thetaiotaomicron


title: Illumina HiSeq 2500 (Littorina littorea)

status: Public on Sep 05 2025

organism: Littorina littorea


title: NanoString nCounter Human Host Response

city: Santiago de Compostela

first: Alberto

last: Gómez-Carballa

state: A coruña

address: Choupana sn

country: Spain

institute: GENVIP research group

organism: Homo sapiens

manufacture_protocol: Host Response | NanoString


title: NanoString nCounter Human Gene Expression [eMED_Dem_C4387]

city: Hannover

first: Robin

last: Kosch

address: Carl-Neuberg-Straße 1

institute: Hannover Medical School

manufacture_protocol: NanoString nCounter technology (NanoString Technologies, Seattle, WA).


title: Illumina HiSeq 2500 (Astropecten polyacanthus)

organism: Astropecten polyacanthus


title: PromethION (Nematostella vectensis)

organism: Nematostella vectensis


title: DNBSEQ-G400 (Nicotiana tabacum)


title: Illumina NovaSeq X (Nematostella vectensis)


title: Illumina NovaSeq X Plus (Bifidobacterium breve)

status: Public on Sep 04 2025

organism: Bifidobacterium breve


title: Illumina NovaSeq 6000 (Comephorus dybowskii)

organism: Comephorus dybowskii


title: nCounter® Human AutoImmune Profiling Panel

status: Public on Sep 07 2025

city: Nantes

first: Frédéric

last: Ebstein

address: IRS-UN - 8 quai Moncousu - BP 70721

department: L'unité de recherche de l'institut du thorax, Inserm UMR 1087

country: France

institute: French Institute of Health and Medical Research (Inserm)


title: Illumina NovaSeq X (Saturnispora dispora)

organism: Saturnispora dispora


title: Illumina NovaSeq X (Saturnispora hagleri)

organism: Saturnispora hagleri


title: Illumina NovaSeq X (Saturnispora silvae)

organism: Saturnispora silvae


title: Illumina NovaSeq 6000 (Fusarium oxysporum f. sp. lycopersici)

organism: Fusarium oxysporum f. sp. lycopersici


title: Illumina HiSeq 4000 (Campeiostachys nutans)

status: Public on Sep 03 2025

organism: Campeiostachys nutans


title: Illumina NovaSeq 6000 (Acinetobacter venetianus)

organism: Acinetobacter venetianus


title: Illumina NovaSeq 6000 (Thermococcus onnurineus NA1)

organism: Thermococcus onnurineus NA1


title: Illumina NovaSeq 6000 (Shewanella oneidensis)

organism: Shewanella oneidensis


title: NanoString nCounter Neuroinflammation Panel [NS_HS_Neuroinflam_V1.0]

city: Baltimore

first: Supriyo

last: De

state: Maryland

address: 251 Bayview Blvd

department: Laboratory of Genetics and Genomics

institute: NIA-IRP, NIH

description: fluorescent barcodes bound to nucleotide probes 100 nucleotides in length that are complementary to target mRNA molecules


title: Illumina NovaSeq X (Acinetobacter baumannii)

organism: Acinetobacter baumannii


title: Illumina NovaSeq 6000 (Mesorhizobium robiniae)

status: Public on Sep 02 2025

organism: Mesorhizobium robiniae


title: NextSeq 2000 (Brachypodium distachyon)

organism: Brachypodium distachyon


title: Illumina NextSeq 500 (Dehalococcoides mccartyi CBDB1)

organism: Dehalococcoides mccartyi CBDB1


title: [Clariom_S_Human_HT] Affymetrix Human Clariom S Assay HT (gene level)

city: Bangor

first: Tim

last: Smith

address: Dean Street Bangor LL57 1UT

country: United Kingdom

institute: Bangor University

organism: Homo sapiens

manufacture_protocol: See manufacturers website


title: Illumina NovaSeq X Plus (Hordeum vulgare)

organism: Hordeum vulgare


title: Illumina NovaSeq 6000 (Tritrichomonas foetus)

organism: Tritrichomonas foetus


title: DNBSEQ-T7 (Methanococcus maripaludis)

organism: Methanococcus maripaludis


title: Illumina NovaSeq 6000 (Sander lucioperca)

organism: Sander lucioperca


title: NextSeq 2000 (Acetonema longum)

organism: Acetonema longum


title: Illumina HiSeq 2500 (Acetonema longum)


title: Illumina NovaSeq X Plus (Methanococcus maripaludis)


title: Illumina NovaSeq 6000 (Ctenomys talarum)

organism: Ctenomys talarum


title: Illumina NovaSeq 6000 (Robinia pseudoacacia)

organism: Robinia pseudoacacia


title: DNBSEQ-T7 (Schizosaccharomyces pombe)

organism: Schizosaccharomyces pombe


title: Nanostring_nCounter_CodeSet_Dog_Prostate _Cancer_BPH

status: Public on Aug 31 2025

city: Wrocław

first: Maciej

last: Zacharski

state: dolnoslaskie

address: Norwida, 31

department: Department of Biochemistry and Molecular Biology

country: Poland

institute: Wroclaw University of Environmental and Life Sciences

organism: Canis lupus familiaris

manufacture_protocol: Nanosting Direct Digital Counting - Nanostring does not share the Custom CodeSet manufacturing protocol.


title: Illumina NovaSeq X (Saturnispora mendoncae)

organism: Saturnispora mendoncae


title: NanoString CosMx SMI (human)

status: Public on Jun 13 2023


title: The miniarray (Arabidopsis Pathoarray) 464_001

status: Public on Apr 08 2006

city: Sapporo

first: Masanao

last: Sato

state: Hokkaido

address: Kita 9 jo Nishi 9 chome, Kita-ku, Sappro

institute: Hokkaido University

organism: Arabidopsis thaliana

description: This set includes 576 oligonucleotides, 50 to 70-mers, consisting of 464 Arabidopsis pathogen-responsive and 107 Arabidopsis normalization genes and 5 arbitrary spiked-controls.  Each feature contains 0.9mg/ml of oligonucleotide above and 0.25mg/ml of calibration oligonucleotide.

first: Fumiaki

last: Katagiri

manufacture_protocol:
The arrays were printed in the Stanford Functional Genomics Facility with custom built microarrayers. Oligonucleotides were printed with a 200μm pitch onto Corning UltraGAPS slides at a concentration of 50 μM in Pront! Universal Spotting Solution.  4 x 4 arrays were printed onto each slide utilizing Majer Precission (http://www.majerprecision.com/) MicroQuill 2000 pins. The oligonucleotide probe set was printed twice for each subarray and duplicates for each feature was spotted for a total of four subarrays per array.
Each feature was spotted eight times per slide as shown in the Supplementary file GPL3638_completeLayout.txt.