title: Illumina NovaSeq X Plus (Ceratotherium simum simum)

status: Public on Mar 30 2026

last: GEO

country: USA

organism: Ceratotherium simum simum

technology: high-throughput sequencing

distribution: virtual


title: Illumina NovaSeq X Plus (Populus alba x Populus glandulosa)

organism: Populus alba x Populus glandulosa


title: Illumina NovaSeq X (Bacillus subtilis)

organism: Bacillus subtilis


title: Illumina HiSeq 4000 (Gloeophyllum trabeum)

organism: Gloeophyllum trabeum


title: Illumina NovaSeq X Plus (Citrobacter portucalensis)

organism: Citrobacter portucalensis


title: Illumina NovaSeq 6000 (Tadarida brasiliensis)

status: Public on Mar 27 2026

organism: Tadarida brasiliensis


title: Illumina HiSeq 4000 (Trametes versicolor)

organism: Trametes versicolor


title: Illumina NovaSeq X Plus (Cromileptes altivelis)

organism: Cromileptes altivelis


title: GNF1H

status: Public on Mar 19 2004

city: San Diego

first: John

last: Walker

state: CA

address: 10675 John Jay Hopkins Dr

institute: NIBR

organism: Homo sapiens

technology: in situ oligonucleotide

description:
GNF1H
In 2002, we identified a non-redundant set of human target sequences using the following sources: RefSeq (15,491 sequences), Celera (49,859 sequences), and Ensembl (33,698 sequences). First, all sequences were RepeatMasked to remove repetitive elements. Next, sequence identity between individual sequences was established using pairwise BLAT or BLAST and sim4. The results from single-linkage clustering were further triaged to produce a final target set of 44,775 targets with the highest degree of confidence of computational prediction (biasing toward sequences containing Interpro domains and away from non-coding RNAs). Finally, the human sequence set was pruned of all targets already represented on Affymetrix's commercially available U133A array, leaving 22,645 target sequences for our custom array. The final target sets were submitted to the Affymetrix's chip design pipeline for fabrication of the GNF1H arrays.

Update: At the time of publication (2004, DOI: 10.1073/pnas.0400782101), by request from Celera, we have masked any and all sequences that were derived from Celera data. We have been able to re-annotate and associate 11,406 probe sets to public data, and for the rest (11,086 probe sets), we masked the sequences by poly-N and replaced their annotation if any with "predicted transcript (Celera)" and their target regions and individual probe sequences are all unavailable. For approximately 750 more probe sets, the annotation is based on the orthologous annotation data available in 2004 and the phrase "a predicted transcript (Celera), similar to :[insert the rest [e.g. M.musculus]]" should be implied. Caveat emptor: Even though all these sets are designed from human transcripts and computational predictions, it should not be expected that they are efficient to assay the modern version of any human transcript. All individual probe sequences for 11,406 sets are provided for the interested parties to do their own sequence analysis (suggested route: blast/blat or otherwise align individual probes to the most recent genome+transcriptome database and use a >8 out of 11 voting system to determine the most likely target(s)). Such analysis will be in most cases more precise than any precomputed annotation (however, in many cases this new, precise annotation will be "intergenic region", "intron", "antisense to :" - due to old age of the array probes may have been designed outside of the true UTR, the 2002 genomic sequence may have been misassembled, predictions were truncated or completely wrong etc).

distribution: non-commercial


title: Human forebrain organoid MERFISH

status: Public on Mar 29 2026

city: Singapore

first: Jinyue

last: Liu

address: 60 Biopolis Street

country: Singapore

institute: Genome Institute of Singapore

organism: synthetic construct

technology: other

description: A Modified Hamming Distance 4 encoding scheme was adopted for MERFISH probe design. 30-nucleotide long target regions were identified using a previously published algorithm, with GRCh38 as reference, a specificity cut-off of 0.5 and isospecificity cut-off of 0.4. Three readout sequences per encoding probe were used; they were either 20-nucleotide long as published in Moffitt et al. , or 30-nucleotide long as published in Chen et al.

distribution: custom-commercial

manufacture_protocol: REQUESTED


title: NextSeq 2000 (Scyliorhinus canicula)

organism: Scyliorhinus canicula


title: Texas LC science WIZ-AA-Human-7k [LCS343 - 7K UDG]

status: Public on Mar 26 2026

city: Rehovot

first: Noga

last: Levy

address: 234 Herzl St.

country: Israel

institute: Weizmann Institute of Science


title: qPCR assay panel Triticum aestivum in response to heat stress

status: Public on Mar 28 2026

city: Giza

first: Marwa

last: Sanad

address: 33 El Bohouth St, Dokki

department: Genetics and Cytology

country: Egypt

institute: National Research Centre

organism: Triticum aestivum

technology: RT-PCR

manufacture_protocol: ThermoFisher


title: PromethION (Pongo abelii)

organism: Pongo abelii


title: PromethION (Macaca fascicularis)

organism: Macaca fascicularis


title: GNF1M

organism: Mus musculus

description:
GNF1M
We identified a non-redundant set of target sequences for the mouse using the following sources: RefSeq (12,029 sequences), Celera (29,331 sequences), and RIKEN (46,299 sequences).  First, all sequences were RepeatMasked to remove repetitive elements.  Next, sequence identity between individual sequences was established using pairwise BLAT or BLAST and sim4.  The results from single-linkage clustering were further triaged to produce a final target set of 36,182 targets with the highest degree of confidence of computational prediction (biasing toward sequences containing Interpro domains and away from non-coding RNAs).  The final target sets were submitted to the Affymetrix's chip design pipeline for fabrication of the arrays. For data submission here, only probe sets that mapped to public sequences are given.


title: PromethION (Gorilla gorilla)

organism: Gorilla gorilla


title: Illumina NovaSeq 6000 (Hyalomma anatolicum)

status: Public on Mar 24 2026

organism: Hyalomma anatolicum


title: NextSeq 2000 (Prevotella melaninogenica ATCC 25845; Pseudomonas aeruginosa PA14; Staphylococcus aureus subsp. aureus str. Newman; Streptococcus sanguinis SK36)

organism:
Streptococcus sanguinis SK36
Staphylococcus aureus subsp. aureus str. Newman
Prevotella melaninogenica ATCC 25845
Pseudomonas aeruginosa PA14


title: PromethION (Schmidtea mediterranea)

organism: Schmidtea mediterranea


title: Illumina NovaSeq 6000 (Glycine max; Meloidogyne hapla)

organism:
Glycine max
Meloidogyne hapla


title: NextSeq 2000 (Sigmodon hispidus)

organism: Sigmodon hispidus


title: Illumina NovaSeq X Plus (Rhizopus microsporus)

organism: Rhizopus microsporus


title: Illumina NovaSeq X (Akkermansia muciniphila)

status: Public on Mar 23 2026

organism: Akkermansia muciniphila


title: Illumina HiSeq 2000 (Medicago truncatula; Meloidogyne hapla)

organism:
Medicago truncatula
Meloidogyne hapla


title: Illumina HiSeq 4000 (Dehalococcoides mccartyi)

organism: Dehalococcoides mccartyi


title: Illumina NovaSeq X Plus (Lasiopodomys mandarinus)

organism: Lasiopodomys mandarinus


title: Xenium In Situ Analyzer: Medicago truncatula

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Medicago truncatula

distribution: commercial


title: Illumina NovaSeq 6000 (Dickeya solani MK10)

organism: Dickeya solani MK10


title: NextSeq 2000 (Harpegnathos saltator)

status: Public on Mar 19 2026

organism: Harpegnathos saltator


title: Illumina NovaSeq 6000 (Xanthomonas campestris pv. campestris)

status: Public on Mar 20 2026

organism: Xanthomonas campestris pv. campestris


title: Illumina NovaSeq 6000 (Colocasia esculenta)

organism: Colocasia esculenta


title: NextSeq 2000 (Salmonella enterica)

organism: Salmonella enterica


title: NanoString nCounter Banff Human Organ Transplant (B-HOT) Customized Panel [NS_Hs_Transplant_v1.0+PLS_Silvestre_C9012]

status: Public on Mar 18 2026

city: Paris

first: Jean-Sébastien

last: Hulot

address: Rue Leblanc

country: France

institute: Paris Centre de Recherche Cardiovasculaire

organism: Homo sapiens

manufacture_protocol: See manufacturer's website https://brukerspatialbiology.com/products/ncounter-analysis-system/ncounter-systems-overview/


title: NanoString Human PanCancer Immune Profiling Panel  [NS_IO_360_v1.0+PLS_NIH_KSHV_C9879]

status: Public on Mar 17 2026

first: Laurie

middle: T

last: Krug

address: Building 10, 9000 Rockville Pike

institute: NIH

manufacture_protocol: See manufacturer's website


title: NextSeq 2000 (Yarrowia lipolytica)

organism: Yarrowia lipolytica


title: Illumina MiSeq (Salmonella enterica)


title: Illumina NovaSeq 6000 (Scomber scombrus)

status: Public on Mar 16 2026

organism: Scomber scombrus


title: Illumina HiSeq 2500 (Ganoderma boninense)

organism: Ganoderma boninense


title: MGISEQ-2000RS (Lagopus muta hyperborea)

status: Public on Mar 13 2026

organism: Lagopus muta hyperborea


title: Illumina NovaSeq X Plus (Daphnia magna)

organism: Daphnia magna


title: Illumina NovaSeq 6000 (Escherichia coli O127:H6)

organism: Escherichia coli O127:H6


title: Illumina NovaSeq 6000 (Clusia major)

status: Public on Mar 12 2026

organism: Clusia major


title: Illumina NovaSeq X (Artibeus jamaicensis)

organism: Artibeus jamaicensis


title: Infinium Rangifer 63K SNP array

city: Toronto

first: Vanessa

last: Luzuriaga-Aveiga

state: ON

address: 361A Old Finch Ave

department: Wildlife Science

country: Canada

institute: Toronto Zoo

organism: Rangifer tarandus

technology: oligonucleotide beads

manufacture_protocol: see Illumina web site


title: PromethION (Nicotiana tabacum)

status: Public on Mar 11 2026

organism: Nicotiana tabacum


title: Illumina NovaSeq 6000 (Nannospalax galili)

status: Public on Mar 10 2026

organism: Nannospalax galili


title: Illumina NextSeq 500 (Gaeumannomyces tritici)

organism: Gaeumannomyces tritici


title: MinION (Artibeus jamaicensis)


title: Illumina NovaSeq 6000 (metagenome)

organism: metagenome


title: Illumina NovaSeq 6000 (Oryza rufipogon)

status: Public on Mar 09 2026

organism: Oryza rufipogon


title: Illumina NovaSeq 6000 (Apis cerana)

status: Public on Mar 06 2026

organism: Apis cerana


title: DNBSEQ-T7 (Columba livia)

organism: Columba livia


title: Illumina NovaSeq X Plus (Oreochromis mossambicus)

organism: Oreochromis mossambicus


title: NextSeq 550 (Nannospalax nehringi)

status: Public on Mar 04 2026

organism: Nannospalax nehringi


title: Illumina MiSeq (human vaginal metagenome)

organism: human vaginal metagenome


title: Illumina NextSeq 500 (Pongo abelii)

organism: Pongo abelii


title: Illumina NovaSeq 6000 (Populus alba)

organism: Populus alba


title: Illumina NextSeq 500 (Pan troglodytes verus)

organism: Pan troglodytes verus


title: Element AVITI (Pseudomonas syringae pv. tomato str. DC3000)

status: Public on Mar 03 2026


title: Illumina NovaSeq X Plus (Drosophila yakuba)

organism: Drosophila yakuba


title: Illumina NovaSeq 6000 (Toxoplasma)

organism: Toxoplasma


title: DNBSEQ-T7 (Solanum tuberosum)

organism: Solanum tuberosum


title: Illumina NovaSeq X Plus (Sebastes schlegelii)

organism: Sebastes schlegelii


title: Illumina HiSeq 4000 (Campylobacter jejuni subsp. jejuni 81-176)

status: Public on Mar 02 2026


title: Illumina NovaSeq 6000 (Halicryptus spinulosus)

organism: Halicryptus spinulosus


title: NextSeq 2000 (Chlorocebus aethiops)

organism: Chlorocebus aethiops


title: FASTASeq 300 (Rattus norvegicus)

organism: Rattus norvegicus


title: Illumina NovaSeq X Plus (Fusobacterium polymorphum)

organism: Fusobacterium polymorphum


title: NextSeq 2000 (Cricetulus griseus)

organism: Cricetulus griseus


title: Illumina NovaSeq X (Episyrphus balteatus)

organism: Episyrphus balteatus


title: Illumina MiSeq (Lagodon rhomboides)

organism: Lagodon rhomboides


title: Illumina NovaSeq 6000 (Priapulus caudatus)

organism: Priapulus caudatus


title: Illumina HiSeq 2000 (Priapulus caudatus)


title: Illumina NovaSeq 6000 (Acinetobacter venetianus RAG-1 = CIP 110063)


title: Illumina NextSeq 500 (Gaeumannomyces hyphopodioides)

organism: Gaeumannomyces hyphopodioides


title: DNBSEQ-T7 (Pinus tabuliformis)

organism: Pinus tabuliformis


title: Illumina NovaSeq X Plus (Brachypodium distachyon)

organism: Brachypodium distachyon


title: Illumina MiSeq (Listeria seeligeri)

status: Public on Mar 05 2026

organism: Listeria seeligeri


title: Illumina NextSeq 500 (Listeria seeligeri)


title: NextSeq 2000 (Aspergillus fumigatus)

status: Public on Mar 24 2026

organism: Aspergillus fumigatus


title: Element AVITI (Pseudomonas putida KT2440)

organism: Pseudomonas putida KT2440


title: Illumina HiSeq 4000 (Rattus norvegicus; synthetic construct)

organism:
Rattus norvegicus
synthetic construct


title: Illumina NovaSeq 6000 (Zootermopsis nevadensis)

organism: Zootermopsis nevadensis


title: Illumina NovaSeq 6000 (Achroia grisella)

organism: Achroia grisella


title: DNBSEQ-T7 (Synechocystis sp. PCC 6803)

organism: Synechocystis sp. PCC 6803


title: Illumina NovaSeq 6000 (Galleria mellonella)

organism: Galleria mellonella


title: NextSeq 2000 (Clostridium autoethanogenum)

organism: Clostridium autoethanogenum


title: Illumina HiSeq 2500 (Oryza)

organism: Oryza


title: Meningococcal antigens microarray

city: Manchester

first: Fidel

last: Ramirez Bencomo

state: England

address: Michael Smith Building

department: FBMH/SBS/EIGen

country: United Kingdom

institute: The University of Manchester

organism: Neisseria meningitidis

technology: spotted peptide or protein

manufacture_protocol: Recombinant proteins were prepared at 0.5 mg/mL in 40% glycerol. Positive controls consisted of 8 serial 2-fold dilutions of mouse, human, rat, and rabbit IgG (from 0.5 mg/mL to 0.004 mg/mL in 40% glycerol). Negative controls were the different protein buffers + 40% glycerol. All samples were printed randomly in replicates (four times) onto ultra-thin nitrocellulose-coated glass slides (FAST slides; Maine Manufacturing). Printing was performed with the ink-jet spotter Marathon Argus (Arrayjet, UK) (200 pL for each spot) in a cabinet with controlled temperature and humidity (18°C and 50-55%, respectively). The efficiency and the reproducibility of protein immobilisation were assessed by probing some test slides with mouse anti-His tag monoclonal antibodies (Sigma Aldrich, SAB1305538) diluted 1:1000 and followed by detection with an AlexaFluor 647-conjugated anti-mouse IgG secondary antibody (Jackson Immunoresearch) diluted 1:800


title: NextSeq 550 (Strongylocentrotus purpuratus)

organism: Strongylocentrotus purpuratus


title: NanoString Gene Expression CodeSet [UAB_DESHANE1_C5899]

city: Birmingham

first: Jessy

middle: S

last: Deshane

state: AL

address: 1900 University Boulevard

institute: University of Alabama at Birmingham

organism: Homo sapiens


title: PromethION (Artibeus jamaicensis)

organism: Artibeus jamaicensis


title: Illumina HiSeq 2000 (Alysiella filiformis)

organism: Alysiella filiformis


title: Canine IO NanoString Probeset [gene name version]

status: Public on Mar 22 2026

first: Anjali

last: Garg

state: Maryland

address: Building 10, Room 1B53

department: Comparative Oncology Program,NCI

institute: National Institute of Health

organism: Canis lupus familiaris


title: Illumina NovaSeq 6000 (Peromyscus maniculatus nubiterrae)

organism: Peromyscus maniculatus nubiterrae


title: Illumina NovaSeq 6000 (Peromyscus maniculatus bairdii)

organism: Peromyscus maniculatus bairdii


title: Element AVITI (Pseudomonas aeruginosa PAO1)

organism: Pseudomonas aeruginosa PAO1


title: Illumina NovaSeq X Plus (Acinetobacter phage SH-Ab 15599)

organism: Acinetobacter phage SH-Ab 15599


title: Xenium In Situ Analyzer: Ambystoma mexicanum

status: Public on Apr 16 2025

organism: Ambystoma mexicanum


title: nCounter® Breast Cancer 360™ Panel [GeneRLF: NS_BC_360_v2.0]

status: Public on Dec 05 2023

city: Indianapolis

first: Elizabeth

last: Yeh

state: Indiana

address: 635 Barnhill Drive, Medical Science Building A418

department: Pharmacology and Toxicology

institute: Indiana University School of Medicine

description: Synthetic oligonucleotide pool corresponding to all panel gene targets used for normalization

manufacturer: NanoString Technologies™, Seattle, Washington, USA (776 genes total, 758 genes  + 18 reference genes)


title: NanoString Human nCounter PanCancer IO 360 Panel [NS_IO_360]

status: Public on Dec 28 2019

description: The nCounter® PanCancer IO 360 Panel includes 750 genes that cover the key pathways at the interface of the tumor, tumor microenvironment, and immune response; in addition, there are 20 internal reference genes for data normalization.

manufacture_protocol: See manufacturer's website (www.nanostring.com).


title: Nanostring nCounter human CAR-T Characterization panel [NS_Hs_CART_v1.0]

status: Public on Mar 01 2026

city: Houston

first: Irene

middle: M

last: Min

state: TX

address: 6565 Fannin Street

department: Radiology

institute: Houston Methodist Research Institute

manufacture_protocol: Nanostring