title: siRNA RNA-seq from K562 (ENCSR675SDG)

summary:
RNA-seq on K562 cells treated with siRNA targeting MAX.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR675KPR)

status: Public on Nov 08 2016

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

type: Expression profiling by high throughput sequencing

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against RBM3. (K562-RBM3)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR674KEK)

summary:
Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHLV18)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR696LLZ)

summary:
shRNA knockdown against NIP7 in HepG2 cells followed by RNA-seq. (NIP7_BGHLV18)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from body of pancreas (ENCSR671IYC)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's pancreas tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR674KDQ)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against GRSF1. (GRSF1-BGHLV22)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from prostate gland (ENCSR671RMD)

summary:
The library contained in this experiment come from human prostate tissue. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from subcutaneous adipose tissue (ENCSR671WMH)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's adipose tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from esophagus muscularis mucosa (ENCSR669JBL)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR667PLJ)

summary:
Control shRNA against no target in K562 cells followed by RNA-seq. (non-target_BGKLV24)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR667RIA)

summary:
shRNA knockdown against RPS2 in HepG2 cells followed by RNA-seq. (RPS2_BGHLV18)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR661HEL)

summary:
Control shRNA against no target in K562 cells followed by RNA-seq. (NT_BGKLV19-B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from erythroblast (ENCSR661TLW)

summary:
PSU mouse Erythroblast 1 ng RNA-seq

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from mammary microvascular endothelial cell (ENCSR663WYF)

type: Non-coding RNA profiling by high throughput sequencing

summary:
The libraries contained in this experiment come from independent isolates of mammary microvascular endothelial cell primary cell line (HMMEC). They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR656DQV)

summary:
shRNA knockdown against PKM2 in HepG2 cells followed by RNA-seq. (PKM2_BGHLV16)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR660ETT)

summary:
shRNA knockdown against EIF3D in K562 cells followed by RNA-seq. (EIF3D_BGKLV19)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR660MZN)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against HNRNPD. (HNRNPD-BGHLV22)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: siRNA RNA-seq from K562 (ENCSR656ZOI)

summary:
RNA-seq on K562 cells treated with siRNA targeting LMNB1.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from transverse colon (ENCSR653ZJF)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from transverse colon (ENCSR649WDK)

summary:
The library contained in this experiment come from human transverse colon tissue. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR644AIM)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against SF1. (SF1_BGHLV26)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from omental fat pad (ENCSR645TCG)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's adipose tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR648BSC)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against PUF60. (PUF60-BGHLV23)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR643UFV)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against NOL12. (NOL12-BGHLV23)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR634KHL)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against HDGF. (HDGF_BGHLV31)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: small RNA-seq from right lobe of liver (ENCSR634VLA)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's right lobe of liver tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: siRNA RNA-seq from K562 (ENCSR640PVZ)

summary:
RNA-seq on K562 cells treated with siRNA targeting MAFK.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR635BOO)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against SNRNP70. (SNRNP70_BGHLV35)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR634KBO)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against HNRNPC. (HNRNPC_BGKLV21)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR639LKS)

summary:
shRNA knockdown against FKBP4 in HepG2 cells followed by RNA-seq. (FKBP4_BGHLV17)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from thoracic aorta (ENCSR632GYF)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's aorta tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: siRNA RNA-seq from K562 (ENCSR631RKH)

summary:
RNA-seq on K562 cells treated with siRNA targeting MXI1.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from tibial nerve (ENCSR648OSR)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's tibial nerve tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR647NYX)

summary:
shRNA knockdown against NONO in HepG2 cells followed by RNA-seq. (NONO_BGHLV17)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR629RUG)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against NSUN2. (NSUN2_BGHLV35)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from transverse colon (ENCSR630VJN)

summary:
The libraries contained in this Experiment come from tissue sub-sections from the transverse colon obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR628JYB)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against SF1. (K-SF1)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: small RNA-seq from sigmoid colon (ENCSR635SLB)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR631RFX)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against MTPAP. (MTPAP_BGKLV34)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: small RNA-seq from testis (ENCSR626GVP)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from prostate gland (ENCSR655HUL)

summary:
The library contained in this experiment come from human prostate tissue. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR624XHG)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against RNASEN. (RNASEN50_BGKLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from spleen (ENCSR627SPU)

summary:
The library contained in this experiment come from human spleen tissue. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR620PUP)

summary:
Control shRNA against no target in K562 cells followed by RNA-seq. (NT_BGKLV25)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR620OKS)

summary:
shRNA knockdown against EFTUD2 in HepG2 cells followed by RNA-seq. (EFTUD2_BGHLV16)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from esophagus muscularis mucosa (ENCSR620LQN)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagal muscle tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR620HAA)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against PPIG. (PPIG_BGHLV27)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR624FBY)

summary:
shRNA knockdown against LARP7 in HepG2 cells followed by RNA-seq. (LARP7_BGHLV18)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR618IQH)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against PUS1. (PUS1_BGKLV32)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from suprapubic skin (ENCSR616JRI)

summary:
The library contained in this experiment come from human suprapubic skin tissue. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from omental fat pad (ENCSR611YXR)

summary:
The library contained in this experiment come from human adipose tissue of omentum tissue. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from neural cell (ENCSR612EAO)

summary:
RAMPAGE H1-neuron

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR611LQB)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against PSIP1. (PSIP1_BGKLV21)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from cardiac muscle cell (ENCSR613JNT)

summary:
The libraries contained in this Experiment come from hESC's that were differentiated into cardiomyocytes. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from gastrocnemius medialis (ENCSR609NZM)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's skeletal muscle tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR610VTA)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against ABCF1. (ABCF1_BGHLV30)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from ovary (ENCSR601URL)

summary:
The library contained in this experiment come from human female gonad tissue. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: small RNA-seq from right lobe of liver (ENCSR603XUX)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's right lobe of liver tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR602AWR)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against TUFM. (TUFM-BGKLV25)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: small RNA-seq from omental fat pad (ENCSR610GDH)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's adipose tissue tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: siRNA RNA-seq from K562 (ENCSR608CVU)

summary:
Control siRNA against no target in K562 cells followed by RNA-seq.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR599UDS)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against AARS. (AARS_BGKLV21)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR606QIX)

summary:
shRNA knockdown against BCCIP in K562 cells followed by RNA-seq. (BCCIP_BGKLV19)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from neural progenitor cell (ENCSR602PHV)

summary:
The libraries contained in this experiment come from independent growths of H9 embryonic stem cells that were differentiated down a neuronal pathway. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR605MFS)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against CUGBP1. (CUGBP1_BGKLV25)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from breast epithelium (ENCSR598TAK)

summary:
The library contained in this experiment come from human mammary gland tissue. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR598YQX)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against LIN28B. (LIN28B_BGKLV21)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA mRNA RNA-seq from K562 (ENCSR596ACL)

summary:
Initial membrane fractions on K562 Long Poly-A+ from Lecuyer

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR598GKQ)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against DDX59. (DDX59_BGHLV35)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR599PXD)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against RBM15. (RBM15_BGHLV31)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR594DNW)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against CPSF7. (CPSF7_BGHLV30)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: small RNA-seq from spleen (ENCSR593MVW)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR608IAI)

summary:
shRNA knockdown against FASTKD2 in K562 cells followed by RNA-seq. (FASTKD2 BGKLV13)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: small RNA-seq from adrenal gland (ENCSR612WDT)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's adrenal gland tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from gastroesophageal sphincter (ENCSR590VCR)

summary:
The library contained in this experiment come from human esophagogastric junction tissue. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from PC-3 (ENCSR585QYX)

summary:
The libraries contained in this experiment come from independent growths of cell line PC-3. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR585KOJ)

summary:
Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHLV31B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR584LDM)

summary:
shRNA knockdown against DDX27 in K562 cells followed by RNA-seq. (DDX27_BGKLV19)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR584JRB)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against NUFIP2. (NUFIP2_BGHLV26)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR577OVP)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against DNAJC2. (DNAJC2_BGKLV24)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR572FFX)

summary:
Control shRNA against no target in K562 cells followed by RNA-seq. (non-target_BGKLV21)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR573UBF)

summary:
shRNA knockdown against TFIP11 in HepG2 cells followed by RNA-seq. (TFIP11_BGHLV17)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: small RNA-seq from stomach (ENCSR573RGL)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR570CWH)

summary:
shRNA knockdown against BCCIP in HepG2 cells followed by RNA-seq. (BCCIP_BGHLV17)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR562CCA)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against SF1. (SF1_BGKLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR560RSZ)

summary:
shRNA knockdown against DDX52_06 in K562 cells followed by RNA-seq. (DDX52_BGKLV19)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR558XNA)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against PUF60. (PUF60-BGKLV25)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: siRNA RNA-seq from K562 (ENCSR555CYH)

summary:
RNA-seq on K562 cells treated with siRNA targeting ZNF180.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA mRNA RNA-seq from HepG2 (ENCSR561FEE)

summary:
Initial total fractions on HepG2 Long Poly-A+ from Lecuyer

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from right atrium auricular region (ENCSR554TZR)

summary:
The library contained in this experiment come from human right cardiac atrium tissue. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR721MXZ)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against ABCF1. (ABCF1_BGKLV29)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: small RNA-seq from gastroesophageal sphincter (ENCSR646HQQ)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: siRNA RNA-seq from K562 (ENCSR576FFB)

summary:
RNA-seq on K562 cells treated with siRNA targeting KAT2B.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA mRNA RNA-seq from K562 (ENCSR594NJP)

summary:
Initial insoluble fractions on K562 Long Poly-A+ from Lecuyer

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: small RNA-seq from spleen (ENCSR587CPE)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from lower leg skin (ENCSR551NII)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's skin of the lower leg tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR552NBS)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against HNRNPA0. (HNRNPA0_BGKLV24_B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from right atrium auricular region (ENCSR571RXE)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's heart tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR556FNN)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against PPIL4. (PPIL4_BGKLV24_B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from airway epithelial cell (ENCSR582BUX)

summary:
The libraries contained in this experiment come from airway epithelial cells (HSA EpiC). They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from uterus (ENCSR550GPA)

summary:
miRNA-seq on human uterus

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from body of pancreas (ENCSR586SYA)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's pancreas tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR563YIS)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against HNRNPL. (HNRNPL_BGKLV25)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR547NWD)

summary:
shRNA knockdown against AARS in HepG2 cells followed by RNA-seq. (AARS_BGHLV17)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA mRNA RNA-seq from K562 (ENCSR545DKY)

summary:
Initial total fractions on K562 Long Poly-A+ from Lecuyer

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from thyroid gland (ENCSR566RDG)

summary:
miRNA-seq on human thyroid gland

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from erythroid progenitor cell (ENCSR558PXY)

summary:
PSU mouse erythroid progenitor cell (CFU-Ery) 1 ng RNA-seq

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR542ESY)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against KRR1. (KRR1_BGHLV27)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA mRNA RNA-seq from HepG2 (ENCSR541TIG)

summary:
Initial membrane fractions on HepG2 Long Poly-A+ from Lecuyer

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR538QOG)

summary:
Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHLV31)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from SJCRH30 (ENCSR540YVD)

summary:
The libraries contained in this experiment come from independent growths of cell line SJCRH30, a metastatic rhabdomyosarcoma from a 17 year old male. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR535YPK)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against SFPQ. (SFPQ_BGKLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from thyroid gland (ENCSR532LJV)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's thyroid tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR529MBZ)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against PPIG. (PPIG_BGKLV29)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: small RNA-seq from upper lobe of left lung (ENCSR539RDF)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from gastroesophageal sphincter (ENCSR528ZKN)

summary:
The libraries contained in this Experiment come from tissue sub-sections from the esophagogastric junction obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: small RNA-seq from transverse colon (ENCSR525WFB)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR527QNC)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against TARDBP. (TARDBP_BGHLV35)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR518JXY)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against ZNF622. (ZNF622_BGHLV33)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR524YXQ)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against SRPK2. (SRPK2_BGKLV34)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR519KXM)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against SLBP. (SLBP-BGHLV23)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from right lobe of liver (ENCSR543DIO)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's right lobe of liver tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from neural progenitor cell (ENCSR511YYU)

summary:
miRNA-seq on human neural progenitor cell

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR511BNY)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against FIP1L1. (FIP1L1_BGKLV29)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR511SYK)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against ACO1. (ACO1_BGHLV31)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from Peyer's patch (ENCSR544SAU)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's small intestine tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from bronchus fibroblast of lung (ENCSR540CRO)

summary:
The libraries contained in this experiment come from primary bronchial fibroblast cells (HBF). They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR517JDK)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against NKRF. (NKRF_BGHLV27)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR528ASX)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against GRWD1. (GRWD1_BGKLV21)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR509LIV)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against EIF4G1. (EIF4G1-BGHLV23)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from fibroblast of arm (ENCSR510QZW)

summary:
fibroblast of arm

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: siRNA RNA-seq from K562 (ENCSR509YMP)

summary:
RNA-seq on K562 cells treated with siRNA targeting ZMIZ1.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR517JHY)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against MAK16. (MAK16_BGKLV32)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR532ZPP)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against EWSR1. (EWSR1_BGHLV31)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA mRNA RNA-seq from K562 (ENCSR530NHO)

summary:
Initial nucleus fractions on K562 Long Poly-A+ from Lecuyer

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR530BOP)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against SUPT6H. (SUPT6H_BGKLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from M059J (ENCSR507GYW)

summary:
The libraries contained in this experiment come from independent growths of cell line M059J isolated from a malignant glioblastoma of a 33 year old male. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from right lobe of liver (ENCSR504QMK)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's liver tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from subcutaneous adipose tissue (ENCSR504NIU)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's adipose tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from esophagus squamous epithelium (ENCSR510MIA)

summary:
The libraries contained in this Experiment come from tissue sub-sections from the mucosa of the esophagus obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from uterus (ENCSR502DKA)

summary:
The library contained in this experiment come from human uterus tissue. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from suprapubic skin (ENCSR501EGS)

summary:
The library contained in this experiment come from human suprapubic skin tissue. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR496ETJ)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against PES1. (PES1_BGHLV31)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR495YSS)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against EIF2C2. (K-EIF2C2)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from SK-MEL-5 (ENCSR506WDZ)

summary:
The libraries contained in this experiment come from nuclear fractions of a malignant melonoma immortalized cell line SK-MEL-5 derived from a metastatic axillary node of a 24 year old female. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR494UDF)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against DKC1. (DKC1_BGKLV32)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from stomach (ENCSR497BYB)

summary:
The library contained in this experiment come from human stomach tissue. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from right atrium auricular region (ENCSR493KWZ)

summary:
miRNA-seq on human right cardiac atrium

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR494VSD)

summary:
shRNA knockdown against CSDA in HepG2 cells followed by RNA-seq. (CSDA-30-BGHLV20)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from gastrocnemius medialis (ENCSR491VSN)

summary:
miRNA-seq on human skeletal muscle tissue

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from prostate gland (ENCSR495HDM)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's prostate tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR490DYI)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against HNRNPLL. (HNRNPLL_BGHLV35)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR481YXD)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against IGF2BP3. (K-IGF2BP3-25B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR481AYC)

summary:
shRNA knockdown against BCLAF1 in HepG2 cells followed by RNA-seq. (BCLAF1_BGHLV17)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from SK-N-DZ (ENCSR479BMI)

summary:
The libraries contained in this experiment come from nuclear fractions of a neuroblastoma immortalized cell line SK-N-DZ derived from a metastatic site in the bone marrow of a 2 year old female. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from esophagus squamous epithelium (ENCSR474TRG)


title: RAMPAGE from thyroid gland (ENCSR477JQM)

summary:
The library contained in this experiment come from human female thyroid gland tissue. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR477TRX)

summary:
shRNA knockdown against EEF2 in HepG2 cells followed by RNA-seq. (EEF2_BGHLV16)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from stomach (ENCSR471RUK)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from omental fat pad (ENCSR472PZH)

summary:
The library contained in this experiment come from human adipose tissue of omentum tissue. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR486AIO)

summary:
shRNA knockdown against RPS19 in HepG2 cells followed by RNA-seq. (RPS19_BGHLV16)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR470PRV)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against HNRNPC. (K-HNRNPC-25B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: siRNA RNA-seq from K562 (ENCSR472UFW)

summary:
RNA-seq on K562 cells treated with siRNA targeting CDAN1.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from lower leg skin (ENCSR460YCS)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's skin from the lower leg tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from heart left ventricle (ENCSR464UVO)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's heart left ventricle tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR457WBK)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against NUP35. (NUP35_BGHLV27)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR471GIS)

summary:
shRNA knockdown against RRP9 in HepG2 cells followed by RNA-seq. (RRP9_BGHLV17)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from gastroesophageal sphincter (ENCSR485WBR)

summary:
The libraries contained in this Experiment come from tissue sub-sections from the esophagogastric junction obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR459EMR)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against TUFM. (TUFM-BGHLV23)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from right atrium auricular region (ENCSR457ENP)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's heart tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR492BKM)

summary:
shRNA knockdown against FAM120A in K562 cells followed by RNA-seq. (FAM120A_BGKLV19)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from esophagus muscularis mucosa (ENCSR454ZQB)

summary:
The library contained in this experiment come from human muscle layer of esophagus tissue. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from Peyer's patch (ENCSR450BNZ)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's small intestine tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR453HKS)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against XPO5. (XPO5_BGKLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR450VQO)

summary:
shRNA knockdown against TIAL1 in HepG2 cells followed by RNA-seq. (TIAL1-BHLV20)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from suprapubic skin (ENCSR480SLD)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's suprapubic skin tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from suprapubic skin (ENCSR450ENK)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's suprapubic skin tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from glomerular endothelial cell (ENCSR469ZUS)

summary:
The libraries contained in this experiment come from independent isolates of primary renal glomerular endothelial cells (HGC). They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from gastrocnemius medialis (ENCSR458JVO)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's aorta tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from LHCN-M2 (ENCSR439LGW)

summary:
miRNA-seq on human LHCN-M2 differentiated for 7 days

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from breast epithelium (ENCSR438YPF)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's adipose tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR455TNF)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against TDP-43. (K562-set1b-shTDP43)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from upper lobe of left lung (ENCSR425RGZ)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR447UCG)

summary:
shRNA knockdown against SRSF5 in HepG2 cells followed by RNA-seq. (SRSF5 BGHLV14)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR438MDN)

summary:
Control shRNA against no target in K562 cells followed by RNA-seq. (NT_BGKLV21-B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR426UUG)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against U2AF2. (U2AF2_BGHLV26)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR424JSU)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against UBE2L3. (UBE2L3-BGHLV23)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR424QCW)

summary:
Control shRNA against no target in K562 cells followed by RNA-seq. (NT_BGKLV36)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: small RNA-seq from stomach (ENCSR418FVT)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR419JMU)

summary:
Control shRNA against no target in K562 cells followed by RNA-seq. (non-target_BGKLV24_B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from heart left ventricle (ENCSR436QDU)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's heart tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from breast epithelium (ENCSR434TEU)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's adipose tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: siRNA RNA-seq from K562 (ENCSR443QFD)

summary:
Control siRNA against no target in K562 cells followed by RNA-seq.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR410ZPU)

summary:
shRNA knockdown against BCLAF1 in K562 cells followed by RNA-seq. (BCLAF1_BGKLV19)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from thoracic aorta (ENCSR429EWK)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's aorta tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from induced pluripotent stem cell (ENCSR410OSB)

summary:
The libraries contained in this experiment come from independent growths of PGP1 donor induced pluripotent stem cells (iPSC). They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from pericardium fibroblast (ENCSR419VNG)

summary:
The libraries contained in this experiment come from pericardium fibroblast cells (HPcF). They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from transverse colon (ENCSR403SZN)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from upper lobe of left lung (ENCSR406SAW)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR416ZJH)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against PABPN1. (PABPN1_BGKLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR454KYR)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against SF3A3. (SF3A3_BGKLV34)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: siRNA RNA-seq from K562 (ENCSR401RKW)


title: shRNA RNA-seq from K562 (ENCSR408SDL)

summary:
shRNA knockdown against SMNDC1 in K562 cells followed by RNA-seq. (SMNDC1 BGKLV13)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from body of pancreas (ENCSR400OKQ)

summary:
miRNA-seq on human pancreas

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR422JMS)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against SSRP1. (SSRP1_BGHLV27)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from subcutaneous adipose tissue (ENCSR419MZM)

summary:
The library contained in this experiment come from human adipose tissue tissue. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR392HSJ)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against HNRNPF. (HNRNPF_BGKLV21)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from heart left ventricle (ENCSR391VGU)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's heart tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: siRNA RNA-seq from K562 (ENCSR390GWL)

summary:
RNA-seq on K562 cells treated with siRNA targeting RCOR1.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR410MIQ)

summary:
shRNA knockdown against RPS3 in K562 cells followed by RNA-seq. (RPS3 BGKLV13)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR398GHW)

summary:
shRNA knockdown against GEMIN5 in K562 cells followed by RNA-seq. (GEMIN5_BGKLV19)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR398HXV)

summary:
shRNA knockdown against NONO in K562 cells followed by RNA-seq. (NONO_BGKLV19)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from liver (ENCSR388ZNJ)

summary:
RNA-Seq on Adult Human Liver Tissue STL010,STL011

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR386YEV)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against CCAR1. (CCAR1_BGKLV24)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR385TMY)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against RBM17. (RBM17_BGHLV26)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR389HFU)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against FTO. (FTO_BGHLV35)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR385UPQ)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against RBM15. (RBM15_BGKLV32)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR385KOY)

summary:
shRNA knockdown against DNAJC21 in HepG2 cells followed by RNA-seq. (DNAJC21-46-BGHLV20)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR388CNS)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against DDX47. (DDX47_BGHLV22)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: small RNA-seq from esophagus muscularis mucosa (ENCSR383PLJ)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a53 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA mRNA RNA-seq from K562 (ENCSR384ZXD)

summary:
Initial cytosolic fractions on K562 Long Poly-A+ from Lecuyer

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR382QKD)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against BUD13. (BUD13_BGHLV30)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR379VXW)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against FKBP4. (FKBP4_BGKLV21)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: small RNA-seq from esophagus squamous epithelium (ENCSR379GPS)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR384BDV)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against CPSF6. (CPSF6_BGKLV36)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR376FGR)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against SRSF3. (SRSF3_BGHLV35)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from epithelial cell of alveolus of lung (ENCSR376IXU)

summary:
The libraries contained in this experiment come from independent isolates of epithelial cell of alveolus of lung primary of cell type (HPAE EpiC). They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR374NMJ)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against SF3A3. (SF3A3_BGHLV33)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from prostate gland (ENCSR373CTA)

summary:
miRNA-seq on human prostate

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR372UWV)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against U2AF1. (U2AF1_BGHLV30)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR372DZW)

summary:
RNA-seq on K562 cells treated with a control shRNA against no target. (k562-set-11b-shCNTRL)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR368ZRP)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against PAPOLA. (K-PAPOLA-30B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR366FFV)

summary:
shRNA knockdown against ILF2 in HepG2 cells followed by RNA-seq. (ILF2-BGHLV20)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from body of pancreas (ENCSR366BLN)

summary:
The library contained in this experiment come from human female pancreas tissue. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR364GRM)

summary:
Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHLV23-B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from cardiac muscle cell (ENCSR379YAE)

summary:
The libraries contained in this Experiment come from hESC's that were differentiated into cardiomyocytes. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from pericardium fibroblast (ENCSR362HMX)

summary:
The libraries contained in this experiment come from pericardium fibroblast cells (HPcF). They are stranded PE101 Illumina Hi-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR355OQC)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against NAA15. (NAA15_BGHLV30)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: small RNA-seq from thyroid gland (ENCSR359CVC)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's thyroid gland tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR351CNN)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against CUGBP1. (K-CUGBP1-26B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR347ZHQ)

summary:
shRNA knockdown against XRN2 in HepG2 cells followed by RNA-seq. (XRN2_BGHLV17)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR376RJN)

summary:
Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHLV12-a-b)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from HT1080 (ENCSR352ANU)

summary:
The libraries contained in this experiment come from nuclear fractions of a fibrosarcoma immortalized cell line HT1080 derived from the connective tissue from a 35 year old male. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from HT1080 (ENCSR348DYP)

summary:
The libraries contained in this experiment come from independent growths of cell line HT-1080, a connective tissue fibrosarcoma from a 35 year old male. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR346DZQ)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against NPM1. (NPM1_BGKLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from mesangial cell (ENCSR356VOK)

summary:
The libraries contained in this experiment come from primary mesangial cells (HRMC). They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: siRNA RNA-seq from K562 (ENCSR341RCF)

summary:
Control siRNA against no target in K562 cells followed by RNA-seq.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR343DHN)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against SBDS. (SBDS-BGHLV22)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR341PZW)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against WDR43. (WDR43_BGKLV34)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from megakaryocyte (ENCSR340NCF)

summary:
PSU mouse Megakaryocyte 1 ng RNA-seq

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from esophagus squamous epithelium (ENCSR354QPN)

summary:
The libraries contained in this Experiment come from tissue sub-sections from the mucosa of the esophagus obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR336DFS)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against RBFOX2. (RBFOX2_BGKLV24)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from smooth muscle cell (ENCSR337VPD)

summary:
The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from testis (ENCSR344MQK)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR334BTA)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against WDR3. (WDR3_BGKLV34)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR331DUD)

summary:
shRNA knockdown against DDX55 in K562 cells followed by RNA-seq. (DDX55_BGKLV19)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: small RNA-seq from prostate gland (ENCSR332RHR)

summary:
The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's prostate tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR362XMY)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against UBE2L3. (UBE2L3-BGKLV25)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf