title: CRISPR RNA-seq from K562 (ENCSR341TTW)

summary:
Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT-BGKcLV06)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR528LDT)

status: Public on Jun 15 2021

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

type: Expression profiling by high throughput sequencing

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against PTGES3. (PTGES3-BGHcLV16)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from HepG2 (ENCSR438XYI)

summary:
eCLIP control experiment on HepG2 against MATR3

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR335KFN)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against METTL3. (METTL3-BGKcLV23)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR416YFB)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against SAFB. (SAFB-BGHcLV09)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR416WTE)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CACTIN. (CACTIN-BGKcLV23)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from A549 (ENCSR525HSH)

summary:
mRNA-seq on A549 cell line treated with 100 nM dexamethasone for 25 mins.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR427KVG)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against BARD1. (BARD1-BGKcLV23)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR416NPL)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CXXC1. (CXXC1-BGKcLV17)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR333OGA)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against GEMIN2. (GEMIN2-BGHcLV18)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from adrenal gland (ENCSR424VMF)

type: Non-coding RNA profiling by high throughput sequencing

summary:
RNA Evaluation mouse PND4 female adrenals microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR415DJT)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against PTBP1. (PTBP1_BGKcLV02)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from HepG2 (ENCSR414RME)

summary:
eCLIP control experiment on HepG2 against RBM5

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR410USU)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against NOLC1. (NOLC1-BGKcLV08)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from placenta (ENCSR420YFF)

summary:
Stam Placenta 11007

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR423ERM)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against DCP2. (DCP2-BGKcLV21)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR528YVC)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against SRSF5. (SRSF5-BGKcLV11)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR324WIS)

summary:
Control shRNA against no target in K562 cells followed by RNA-seq. (NT-BGKLV36-B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR516TLX)

summary:
Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGKcLV17)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from HepG2 (ENCSR337XGI)

summary:
eCLIP experiment on HepG2 against SAFB

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR336TYW)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against SAFB. (SAFB-BGKcLV06)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR409CSO)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against AUH. (AUH_BGHLV37)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR323OPW)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against EIF4B. (EIF4B-BGHcLV10)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR516EPT)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against XRCC6. (XRCC6-BGKcLV15)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR322KLN)

summary:
eCLIP control experiment on K562 against PCBP1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR521WCW)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against DDX42. (DDX42-BGKcLV08)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR320IEK)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against PRPF8. (PRPF8-BGKcLV08)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR521WAI)

summary:
Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHcLV07)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from adrenal gland (ENCSR333JBN)

summary:
RNA Evaluation human tissue W61 adrenal gland microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR330ILI)

summary:
Ribo depletion RNA-seq on chromatin fraction RNA which is part of BMDM cell, stimulated with 100 ng/ml Lipid A for 30 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from left cardiac atrium (ENCSR314AYC)

summary:
RNA Evaluation human tissue W78 left cardiac atrium microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR330KHN)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against RBM22. (RBM22_BGHLV37)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR321GBR)

summary:
eCLIP control experiment on K562 against ZC3H11A

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR311OMP)

summary:
Ribo depletion RNA-seq on nucleoplasmic fraction RNA which is part of BMDM cell pre-treated with 100 ng/ml Lipid A 12 hours, washed out for 12 hours, and stimulated with 100 ng/ml Lipid A for 10 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR314GIF)

summary:
Ribo depletion RNA-seq on nucleoplasmic fraction RNA which is part of BMDM cell pre-treated with 100 ng/ml Lipid A 12 hours, washed out for 12 hours, and stimulated with 100 ng/ml Lipid A for 30 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from HepG2 (ENCSR513UTE)

summary:
eCLIP control experiment on HepG2 against HNRNPL

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR511QFJ)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against PRPF39. (PRPF39-BGHcLV18)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from placenta (ENCSR308XAR)

summary:
Stam Placenta 11013

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from K562 (ENCSR308YNT)

summary:
eCLIP experiment on K562 against PUM1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR515LYM)

summary:
Ribo depletion RNA-seq on chromatin fraction RNA which is part of BMDM cell pre-treated with 100 ng/ml Lipid A 12 hours, washed out for 12 hours, and stimulated with 100 ng/ml Lipid A for 25 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from GM12878 (ENCSR408AMO)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR306EWE)

summary:
Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHcLV20)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from HepG2 (ENCSR310WYE)

summary:
eCLIP control experiment on HepG2 against PABPN1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR324GSI)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against NCBP1. (NCBP1-BGHcLV10)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR307KLI)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against LSM7. (LSM7-BGKcLV21)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from HepG2 (ENCSR322HHA)

summary:
eCLIP experiment on HepG2 against TIAL1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR328KKB)

summary:
eCLIP control experiment on K562 against SUPV3L1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR507OWX)

summary:
Ribo depletion RNA-seq on nucleoplasmic fraction RNA which is part of BMDM cell, stimulated with 100 ng/ml Lipid A for 15 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from posterior vena cava (ENCSR407CTE)

summary:
RNA Evaluation human tissue W73 posterior vena cava microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR308RMD)

summary:
eCLIP control experiment on K562 against EXOSC5

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR406SEH)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against EXOSC5. (EXOSC5-BGKcLV06)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR300RMY)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against GSK3A. (GSK3A-BGHcLV14)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR312UYN)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against EIF2B3. (EIF2B3-BGHcLV16)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR312VLS)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against XRCC6. (XRCC6-BGHcLV16)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR404OHQ)

summary:
Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGKcLV15)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR404ABA)

summary:
eCLIP control experiment on K562 against WDR43

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR504CPZ)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against NSUN4. (NSUN4-BGHcLV16)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR504QOC)

summary:
Ribo depletion RNA-seq on nucleoplasmic fraction RNA which is part of BMDM cell, stimulated with 100 ng/ml Lipid A for 30 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR308EYT)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against E4F1. (E4F1-BGHcLV18)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR400XYB)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against CD3EAP. (CD3EAP-BGHcLV16)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR400YKV)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against SART1. (SART1-BGHcLV22)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR403ING)

summary:
Ribo depletion RNA-seq on cytoplasmic fraction RNA which is part of BMDM cell, stimulated with 100 ng/ml Lipid A for 20 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR503VIZ)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against GARS. (GARS-BGKcLV17)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR400SCX)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against GLRX3. (GLRX3-BGHcLV12)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR299PRA)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against EXOSC10. (EXOSC10-BGKcLV21)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR299AAB)

summary:
eCLIP control experiment on K562 against HNRNPL

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from HepG2 (ENCSR298SAD)

summary:
eCLIP control experiment on HepG2 against DGCR8

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR298ASI)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against DDX6. (DDX6-BGKcLV08)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from CD14-positive monocyte (ENCSR297FIU)

type: Genome binding/occupancy profiling by high throughput sequencing

summary:
H3K27ac Mint-ChIP-seq on human CD14-positive monocyte

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR295PZT)

summary:
Ribo depletion RNA-seq on nucleoplasmic fraction RNA which is part of BMDM cell pre-treated with 100 ng/ml Lipid A 12 hours, washed out for 12 hours, and stimulated with 100 ng/ml Lipid A for 40 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR298AQX)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against CHTOP. (CHTOP-BGHcLV22)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR294OOK)

summary:
Ribo depletion RNA-seq on nucleoplasmic fraction RNA which is part of BMDM cell pre-treated with 100 ng/ml Lipid A 12 hours, washed out for 12 hours, and stimulated with 100 ng/ml Lipid A for 120 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR292PXV)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against NT. (NT-BGKcLV11)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR294DOR)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against EIF4E. (EIF4E-BGHcLV16)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from HepG2 (ENCSR290VLT)

summary:
eCLIP experiment on HepG2 against MATR3

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruChase-seq from HepG2 (ENCSR295FEH)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR290GUQ)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against DNMT3B. (DNMT3B-BGHcLV20)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR289HOV)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against YTHDC2. (YTHDC2-BGHLV37-C)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from placenta (ENCSR288RRZ)

summary:
Stam Placenta 11005

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR284SZO)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against EXOSC5. (EXOSC5-BGHcLV07)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR095TFW)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against SF3A2. (SF3A2-BGKcLV21)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR096WVE)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against EIF3H. (EIF3H_BGKcLV04)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR300EBW)

summary:
Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHcLV09)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR093ERJ)

summary:
Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHLV37-D)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR092QTF)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against RAE1. (RAE1-BGKcLV17)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR093FHC)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against WRN. (WRN-BGHLV37-C)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR094HEU)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against HNRNPH1. (HNRNPH1-BGHcLV07-B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from WTC11 (ENCSR281VWZ)

summary:
eGFP-GTF2I ChIP-seq on human WTC11

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR279MNU)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against STAU2. (STAU2-BGHcLV10)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR278PZG)

summary:
Ribo depletion RNA-seq on nucleoplasmic fraction RNA which is part of BMDM cell pre-treated with 100 ng/ml Lipid A 12 hours, washed out for 12 hours, and stimulated with 100 ng/ml Lipid A for 50 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR090SBZ)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against NCBP1. (NCBP1-BGKcLV11)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR290JPJ)

summary:
eCLIP control experiment on K562 against AATF

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from Panc1 (ENCSR086DQY)

summary:
RNA Evaluation Panc1 microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR278CLE)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against ALKBH1. (ALKBH1-BGKcLV23)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR278NFF)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against CDC40. (CDC40_BGHcLV05)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from HepG2 (ENCSR098VKQ)

summary:
eCLIP control experiment on HepG2 against ZC3H11A

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from HepG2 (ENCSR278BZH)

summary:
eCLIP control experiment on HepG2 against NOLC1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR278CHI)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against SSB. (SSB_BGHLV37)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR276GMG)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against XRCC5. (XRCC5-BGKcLV11)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from kidney (ENCSR272WXU)

summary:
RNA Evaluation human tissue W71 kidney microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from HepG2 (ENCSR085JPB)

summary:
eCLIP experiment on HepG2 against WDR43

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR080COL)

summary:
Ribo depletion RNA-seq on nucleoplasmic fraction RNA which is part of BMDM cell pre-treated with 100 ng/ml Lipid A 12 hours, washed out for 12 hours, and stimulated with 100 ng/ml Lipid A for 0 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR269GXO)

summary:
Ribo depletion RNA-seq on nucleoplasmic fraction RNA which is part of BMDM cell, stimulated with 100 ng/ml Lipid A for 0 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR268XHM)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against IGF2BP1. (IGF2BP1_BGHcLV03)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR080NRY)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against DDX51. (DDX51-BGHcLV12)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR282JJC)

summary:
Ribo depletion RNA-seq on cytoplasmic fraction RNA which is part of BMDM cell pre-treated with 100 ng/ml Lipid A 12 hours, washed out for 12 hours, and stimulated with 100 ng/ml Lipid A for 40 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR268SKI)

summary:
eCLIP control experiment on K562 against DDX51

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from GM12878 (ENCSR267RPG)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR266XKN)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against MECP2. (MECP2-BGHcLV16)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR197XHV)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against BAZ1A. (BAZ1A-BGHcLV18)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR266XXD)

summary:
eCLIP control experiment on K562 against DDX21

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from neutrophil (ENCSR074WOD)

summary:
PSU mouse neutrophil total RNA scriptseqv2 RNA-seq

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from K562 (ENCSR089BXO)

summary:
eCLIP experiment on K562 against ABCF1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from macrophage (ENCSR195JXZ)

summary:
mRNA-seq on whole cell extract RNA which is part of BMDM cell, stimulated with 100 ng/ml Lipid A for60 minutes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR272OBW)

summary:
Ribo depletion RNA-seq on cytoplasmic fraction RNA which is part of BMDM cell pre-treated with 100 ng/ml Lipid A 12 hours, washed out for 12 hours, and stimulated with 100 ng/ml Lipid A for 75 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR264MSX)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against EIF4A3. (EIF4A3-BGKcLV15)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR192TPA)

summary:
eCLIP control experiment on K562 against PABPC4

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR194SPW)

summary:
Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHcLV07-B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from HepG2 (ENCSR194HZU)

summary:
eCLIP experiment on HepG2 against NOLC1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from activated CD4-positive, alpha-beta T cell (ENCSR071QRH)

summary:
RNA Evaluation human CD4+ T cells (activated day 2) microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR260BQC)

summary:
Control shRNA against no target in K562 cells followed by RNA-seq. (NT-BGKLV38-C)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from sciatic nerve (ENCSR070KPQ)

summary:
RNA Evaluation human tissue W61 sciatic nerve microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from immature natural killer cell (ENCSR187MVB)

summary:
H3K27ac Mint-ChIP-seq on human immature natural killer cell

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR184YDW)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against ZC3H8. (ZC3H8-BGHLV37-D)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from lower lobe of left lung (ENCSR183WRP)

summary:
RNA Evaluation human tissue W73 lower lobe of left lung microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from MCF-7 (ENCSR258ARX)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR183FVK)

summary:
eCLIP control experiment on K562 against MATR3

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from HepG2 (ENCSR256CHX)

summary:
eCLIP experiment on HepG2 against PCBP1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from A549 (ENCSR192SKV)

summary:
eGFP-HMGXB4 ChIP-seq on human A549

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from K562 (ENCSR181NRW)

summary:
eCLIP experiment on K562 against ZC3H8

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from H9 (ENCSR071LFN)

summary:
RNA Evaluation H9 hESC microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR255PGS)

summary:
eCLIP control experiment on K562 against UTP18

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from heart left ventricle (ENCSR249SPI)

summary:
RNA Evaluation human tissue W76 heart left ventricle microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR251FMT)

summary:
eCLIP control experiment on K562 against GRWD1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from K562 (ENCSR249ROI)

summary:
eCLIP experiment on K562 against HNRNPC

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruChase-seq from HCT116 (ENCSR263QXD)


title: total RNA-seq from monocyte (ENCSR069PIG)

summary:
PSU mouse monocyte 100ng rRNA-depleted RNA-seq via ScriptSeq

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from K562 (ENCSR177QQY)

summary:
eCLIP experiment on K562 against AKAP1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR175OSV)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against DDX39B. (DDX39B-BGHcLV18)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR070AYA)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against WBP11. (WBP11-BGKcLV23)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruChase-seq from Panc1 (ENCSR069MAW)


title: total RNA-seq from macrophage (ENCSR247QSE)

summary:
Ribo depletion RNA-seq on chromatin fraction RNA which is part of BMDM cell, stimulated with 100 ng/ml Lipid A for 120 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR193CCY)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against RPS11. (RPS11-BGKLV34-B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR163PNO)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against YWHAG. (YWHAG-BGKcLV08)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from immature natural killer cell (ENCSR245KON)

summary:
H3K36me3 Mint-ChIP-seq on human immature natural killer cell

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from macrophage (ENCSR164XXE)

summary:
mRNA-seq on whole cell extract RNA which is part of BMDM cell pre-treated with 100 ng/ml Lipid A 12 hours, washed out for 12 hours, and stimulated with 100 ng/ml Lipid A for 120 minutes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from mesothelial cell of epicardium (ENCSR168PXI)

summary:
WA09 derived epicardium (mesothelium)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR165BCF)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against WRN. (WRN_BGKLV38)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCSR175IGC)

summary:
H3K27ac Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from K562 (ENCSR069EVH)

summary:
eCLIP experiment on K562 against FUS

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from placenta (ENCSR244HHV)

summary:
Stam Placenta 11015

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR066ZMF)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against ETF1. (ETF1-BGKcLV08)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR159CPE)

summary:
Ribo depletion RNA-seq on chromatin fraction RNA which is part of BMDM cell pre-treated with 100 ng/ml Lipid A 12 hours, washed out for 12 hours, and stimulated with 100 ng/ml Lipid A for 10 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR163JUC)

summary:
Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT_BGKcLV02)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from Right ventricle myocardium superior (ENCSR064DFT)

summary:
RNA Evaluation human tissue W78 right ventricle myocardium superior microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR244SIO)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against KRR1. (KRR1_BGKLV36)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from HepG2 (ENCSR061SZV)

summary:
eCLIP experiment on HepG2 against DGCR8

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR166MWM)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against RBM14. (RBM14-BGHcLV07)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR156DUX)

summary:
Ribo depletion RNA-seq on nucleoplasmic fraction RNA which is part of BMDM cell, stimulated with 100 ng/ml Lipid A for 50 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR060ATH)

summary:
Ribo depletion RNA-seq on cytoplasmic fraction RNA which is part of BMDM cell, stimulated with 100 ng/ml Lipid A for 50 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR059NPM)

summary:
Ribo depletion RNA-seq on cytoplasmic fraction RNA which is part of BMDM cell, stimulated with 100 ng/ml Lipid A for 0 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR242VKR)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CENPI. (CENPI-BGKcLV08)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR162HOU)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against BRIX1. (BRIX1-BGKcLV23)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR155XOS)

summary:
eCLIP control experiment on K562 against SDAD1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR242DBX)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against CHD3. (CHD3-BGHcLV10)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from cerebral cortex (ENCSR059NOB)

summary:
RNA Evaluation WT female mouse cerebral cortex microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from right lobe of liver (ENCSR155HYM)

summary:
RNA Evaluation human tissue W62 right lobe liver microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from MCF-7 (ENCSR155IQU)

summary:
RNA Evaluation MCF7 microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR241ALC)

summary:
eCLIP control experiment on K562 against UTP3

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruChase-seq from PC-3 (ENCSR155GYW)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from K562 (ENCSR154CSN)

summary:
eCLIP experiment on K562 against DDX52

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR064VKV)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against ZNF574. (ZNF574-BGKcLV17)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from chondrocyte (ENCSR153MHB)

summary:
RNA Evaluation WA09-derived chondrocytes microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR237QLO)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against ACO1. (ACO1-BGKcLV11)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from Panc1 (ENCSR240RKF)


title: microRNA-seq from CD4-positive, alpha-beta memory T cell (ENCSR151IFS)

summary:
RNA Evaluation human memory CD4+ T cells microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from left colon (ENCSR152XXM)

summary:
RNA Evaluation human tissue W73 left colon microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from K562 (ENCSR059BWP)

summary:
PHTF2 ChIP-seq on human K562

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR153GKS)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against SRFBP1. (SRFBP1_BGHLV37)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR148XGX)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against GSPT2. (GSPT2-BGKcLV17)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR058MCC)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against PSMA1. (PSMA1-BGKcLV13)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR153YLH)

summary:
Ribo depletion RNA-seq on chromatin fraction RNA which is part of BMDM cell pre-treated with 100 ng/ml Lipid A 12 hours, washed out for 12 hours, and stimulated with 100 ng/ml Lipid A for 50 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR148UGK)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against DGCR8 on day 41. (DGCR8-D41_BGKcLV02)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR050ONB)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against RNF187. (RNF187-BGKcLV19)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from HepG2 (ENCSR050CVB)


title: CRISPR RNA-seq from K562 (ENCSR148HLA)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against APTX. (APTX-BGKcLV23)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from HepG2 (ENCSR050BDZ)

summary:
eCLIP experiment on HepG2 against SDAD1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCSR048ARD)

summary:
H3K4me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR050ATA)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against RPS11. (RPS11-BGKcLV08)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR048AUX)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against ZC3H11A. (ZC3H11A-BGKcLV11)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR234FWR)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against RPL28. (RPL28-BGKcLV15)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruChase-seq from HCT116 (ENCSR149QZB)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR147RTA)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against FXR2. (FXR2-BGHcLV05)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from immature natural killer cell (ENCSR234BAD)

summary:
H3K4me3 Mint-ChIP-seq on human immature natural killer cell

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR047QHX)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against SF3B1. (SF3B1_BGKLV36)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from HepG2 (ENCSR145ZKN)

summary:
eCLIP control experiment on HepG2 against SSB

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR233UVM)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against ABT1. (ABT1-BGKLV38-C)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR144HCM)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against IFIT2. (IFIT2-BGHcLV18)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR232TFT)

summary:
Ribo depletion RNA-seq on cytoplasmic fraction RNA which is part of BMDM cell, stimulated with 100 ng/ml Lipid A for 15 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from K562 (ENCSR145NLR)

summary:
eCLIP experiment on K562 against DDX51

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from K562 (ENCSR046JHH)

summary:
eCLIP experiment on K562 against CPEB4

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR140QWR)

summary:
Ribo depletion RNA-seq on chromatin fraction RNA which is part of BMDM cell, stimulated with 100 ng/ml Lipid A for 50 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR231RKU)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against DDX21. (DDX21_BGHcLV03)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR231PWH)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against NKRF. (NKRF-BGKLV36-C)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruChase-seq from HepG2 (ENCSR135DZR)


title: CRISPR RNA-seq from K562 (ENCSR226HQD)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against PARP1. (PARP1-BGKcLV13)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from endodermal cell (ENCSR228XLW)

summary:
RNA Evaluation H9 derived endodermal cells microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from HepG2 (ENCSR138HJN)

summary:
eCLIP control experiment on HepG2 against NIP7

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR226KWO)

summary:
Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT_BGKcLV04_B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from ovary (ENCSR224HDT)

summary:
RNA Evaluation human tissue W73 ovary microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from A549 (ENCSR044RZF)

summary:
eGFP-NR2E3 ChIP-seq on human A549

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR224FMP)

summary:
Ribo depletion RNA-seq on cytoplasmic fraction RNA which is part of BMDM cell, stimulated with 100 ng/ml Lipid A for 25 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR039SOI)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against GEMIN2. (GEMIN2-BGKcLV17)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from K562 (ENCSR038JME)

summary:
eCLIP experiment on K562 against WRN

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR036ANR)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against SMAD2. (SMAD2-BGHcLV16)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR219DFA)

summary:
Ribo depletion RNA-seq on nucleoplasmic fraction RNA which is part of BMDM cell, stimulated with 100 ng/ml Lipid A for 10 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR040LSC)

summary:
Ribo depletion RNA-seq on chromatin fraction RNA which is part of BMDM cell pre-treated with 100 ng/ml Lipid A 12 hours, washed out for 12 hours, and stimulated with 100 ng/ml Lipid A for 15 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from K562 (ENCSR040QLV)

summary:
eCLIP experiment on K562 against DDX21

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from cerebral cortex (ENCSR036UMN)

summary:
RNA Evaluation 5xFAD female mouse cerebral cortex microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from HepG2 (ENCSR042RCU)

summary:
eCLIP control experiment on HepG2 against UPF1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from HepG2 (ENCSR130ZDS)

summary:
eCLIP control experiment on HepG2 against SDAD1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR139LOF)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against SRSF7. (SRSF7_BGKcLV02)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from adrenal gland (ENCSR217SVF)

summary:
eCLIP control experiment on adrenal gland against DGCR8

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR225PRV)

summary:
Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHLV37-C)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR129AAZ)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against RBM19. (RBM19-BGKcLV19)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruChase-seq from PC-3 (ENCSR042DKG)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from HepG2 (ENCSR128BUO)

summary:
eCLIP control experiment on HepG2 against BCLAF1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR035LEO)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against EXOSC2. (EXOSC2-BGHcLV22)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from HepG2 (ENCSR129SCO)

summary:
eCLIP control experiment on HepG2 against POLR2G

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from astrocyte (ENCSR129VBC)

summary:
PGP1 derived astrocytes

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR034NAT)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against NPM1. (NPM1-BGKcLV15)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR033XYV)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against EIF4E. (EIF4E-BGKcLV15)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR215FRI)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against PRPF4. (PRPF4-BGHLV37-B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR033FWT)

summary:
eCLIP control experiment on K562 against WDR3

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR029VGU)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against DHX57. (DHX57-BGHcLV18)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR029TSM)

summary:
Ribo depletion RNA-seq on cytoplasmic fraction RNA which is part of BMDM cell, stimulated with 100 ng/ml Lipid A for 10 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR026FEM)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against ERN1. (ERN1-BGKcLV17)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from K562 (ENCSR034GHQ)

summary:
eGFP-HMG20B ChIP-seq on human K562

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from K562 (ENCSR214PDW)

summary:
ZNF780A ChIP-seq on human K562

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR025XBH)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against GSK3B. (GSK3B-BGKcLV15)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR126UCL)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against DDX59. (DDX59-BGKcLV08)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR020EBN)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against DUS3L. (DUS3L-BGHcLV18)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR015KGT)

summary:
Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT-BGKcLV08)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR125BYY)

summary:
Ribo depletion RNA-seq on cytoplasmic fraction RNA which is part of BMDM cell pre-treated with 100 ng/ml Lipid A 12 hours, washed out for 12 hours, and stimulated with 100 ng/ml Lipid A for 50 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR016OIX)

summary:
RNA-seq on K562 cells treated with an shRNA knockdown against MARK2. (MARK2-BGKLV36-C)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR120WNJ)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against LSM7. (LSM7-BGHcLV22)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from right cardiac atrium (ENCSR121NOY)

summary:
RNA Evaluation human tissue W72 right cardiac atrium microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from Right ventricle myocardium inferior (ENCSR026WQC)

summary:
RNA Evaluation human tissue W78 right ventricle myocardium inferior microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from K562 (ENCSR023PKW)

summary:
eCLIP experiment on K562 against EIF3G

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR013PBS)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against NCL. (NCL-BGHcLV18)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from MCF-7 (ENCSR119OFH)

summary:
BRCA2 ChIP-seq on human MCF-7

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR111USM)

summary:
eCLIP control experiment on K562 against SAFB

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from left ventricle myocardium inferior (ENCSR122DIB)

summary:
RNA Evaluation human tissue W78 left ventricle myocardium inferior microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from HepG2 (ENCSR018WPY)

summary:
eCLIP experiment on HepG2 against AQR

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from K562 (ENCSR013CTQ)

summary:
eCLIP experiment on K562 against EXOSC5

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from K562 (ENCSR024FOF)

summary:
Control shRNA against no target in K562 cells followed by RNA-seq. (NT-BGKLV38-B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR010XIH)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against CIRBP. (CIRBP-BGHcLV12)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR016WTN)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against SMAD2. (SMAD2-BGKcLV15)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from IMR-90 (ENCSR123QKC)

summary:
RNA Evaluation IMR-90 microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from K562 (ENCSR120EAR)

summary:
eCLIP experiment on K562 against RPS3

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR208AJS)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against SART1. (SART1-BGKcLV21)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from A549 (ENCSR112XUO)

summary:
eGFP-TP53 ChIP-seq on human A549

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from osteocyte (ENCSR009LCI)

summary:
RNA Evaluation H9 derived osteocytes microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from neural crest cell (ENCSR008VSP)

summary:
RNA Evaluation H9 derived neural crest cells microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR008YAY)

summary:
Ribo depletion RNA-seq on cytoplasmic fraction RNA which is part of BMDM cell, stimulated with 100 ng/ml Lipid A for 30 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR009CIV)

summary:
eCLIP control experiment on K562 against NOLC1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR107TKJ)

summary:
Ribo depletion RNA-seq on nucleoplasmic fraction RNA which is part of BMDM cell, stimulated with 100 ng/ml Lipid A for 90 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR204OEJ)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against PAN2. (PAN2-BGKcLV21)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: shRNA RNA-seq from HepG2 (ENCSR204QKA)

summary:
RNA-seq on HepG2 cells treated with an shRNA knockdown against YWHAG. (YWHAG-BGHLV37-C)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from A549 (ENCSR207WFD)

summary:
eGFP-HMGA2 ChIP-seq on human A549

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from macrophage (ENCSR112SFD)

summary:
Ribo depletion RNA-seq on nucleoplasmic fraction RNA which is part of BMDM cell pre-treated with 100 ng/ml Lipid A 12 hours, washed out for 12 hours, and stimulated with 100 ng/ml Lipid A for 15 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR005RUR)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against SNRPC. (SNRPC-BGHcLV22)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR005UDT)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against ERN1. (ERN1-BGHcLV18)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR005JBU)

summary:
Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT-BGKcLV04-C)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR202SRN)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against PARP1. (PARP1-BGHcLV14)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from K562 (ENCSR202HKN)

summary:
eCLIP experiment on K562 against WDR3

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from spleen (ENCSR005GLZ)

summary:
RNA Evaluation human tissue W73 spleen microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR105LOV)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against PCBP3. (PCBP3-BGKcLV06)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control eCLIP from K562 (ENCSR103HDM)

summary:
eCLIP control experiment on K562 against PHF6

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR105NML)

summary:
Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHcLV03)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from left ventricle myocardium superior (ENCSR200VKZ)

summary:
RNA Evaluation human tissue W78 left ventricle superior microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR002NQQ)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against CNOT10. (CNOT10-BGHcLV22)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from IMR-90 (ENCSR103IHW)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from K562 (ENCSR001VAC)

summary:
eCLIP experiment on K562 against NOLC1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from K562 (ENCSR003GUC)

summary:
E4F1 ChIP-seq on human K562

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR103NNB)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against SDAD1. (SDAD1-BGKcLV06)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: eCLIP from K562 (ENCSR001KKZ)

summary:
eCLIP experiment on K562 against PHF6

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from foreskin keratinocyte (ENCSR100SIL)

summary:
polyA mRNA RNA-seq on primary keratinocytes in day 6 of differentiation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from HepG2 (ENCSR201MAS)

summary:
RNA Evaluation HepG2 microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from pancreas (ENCSR001HGI)

summary:
RNA Evaluation human tissue W61 pancreas microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Methylation profiling of endolymphatic sac tumors

city: Berlin

first: Felix

last: Thierfelder

address: Charitépl. 1

country: Germany

institute: Charite

type: Methylation profiling by genome tiling array

summary: Methylation analysis of sporadic and von Hippel-Lindau syndrome associated endolymphatic sac tumors (ELST).

overall_design: Bisulphite converted DNA from the 19 samples were hybridized to the Illumina Infinium Human MethylationEPIC Beadchip and two were hybridized to the the Illumina Infinium Human Methylation450 Beadchip

first: Leonille

last: Schweizer


title: Identification of Snai1b targets in zebrafish heart by transcriptomic analysis

city: bad nauheim

first: Stefan

last: Günther

address: ludwigtr. 43

institute: MPI for heart and lung research

summary: Purpose: identifying, with RNA-seq, genes targets of Snai1b during zebrafish cardiac development. Results: we identified several differential expressed genes, in particular cytoskeletal genes. In particular, the intermediate filament gene desmin b is upregulated.

overall_design: Hearts were manually dissected at 48 hpf from snai1b mutants and wild-type

first: Alessandra

last: Gentile

last: Guenther


title: Coordinated Changes in Gene Expression Kinetics Underlie both Mouse and Human Erythroid Maturation

city: Cambridge

first: Melania

last: Barile

address: Puddicombe Way

department: Haematology

country: United Kingdom

institute: Cambridge University

summary: Background: Single cell molecular profiling technologies are transforming biomedical research, including the recent demonstration that unspliced pre-mRNA present in single cell RNA-Seq permits prediction of future expression states. Here we applied this ‘so-called RNA velocity concept’ to an extended timecourse dataset covering mouse gastrulation and early organembryogenesis. Results: Intriguingly, RNA velocity correctly identified epiblast cells as the starting point, but several This analysis revealed major limitations of the current RNA velocity framework, whereby application to extended timecourse data resulted in trajectory predictions at later stages were inconsistentmpatible with both real time ordering and existing knowledge. The most striking discrepancy concerned red blood cell maturation, with velocity-inferred trajectories diametrically opposinged to the true differentiation path. Investigating the underlying causes revealed a group of genes with a coordinated step-changeboost in transcriptionexpression kinetics, thus violating the assumptions behindframework of current velocity analysis suites, which does not accommodate time-dependent kinetics changes in expression dynamicsover a lineage. Using scRNA-Seq analysis of chimaeric mouse embryos lacking the major erythroid master regulator Gata1, we show that genes with the step-changes in expression dynamics during erythroid differentiation fail to be up-regulated in the mutant cells, thus underscoring the coordination of modulating transcription rate along a differentiation trajectory. e expected block in erythroid maturation as well as induction of PU.1 and expansion of megakaryocyte progenitors. MoreoverIn addition to, the expected block in erythroid maturation, the Gata1- chimera dataset revealed induction of PU.1 and expansion of megakaryocyte progenitors. genes with complex expression kinetics in wild type cells fail to progress to the late erythroid boost in kinetics, thus underscoring the coordination in modulating expression kinetics. Finally, we show that erythropoiesiserythroid maturation  in human fetal liver is similarly characterized by a coordinated step-changes in gene expression kinetics. Conclusions: By identifying a limitation of the current velocity framework coupled with in vivo analysis of mutant cells, we reveal that erythroid maturation is characterized by a coordinated step-change in gene expression kinetics during erythropoiesis, with likely implications for many other differentiation processes.

overall_design: single-cell RNA sequencing of Gata1- embryonic chimeras

first: Ivan

last: Imaz-Rosshandler

first: Isabella

last: Inzani

first: Shila

last: Ghazanfar

first: Jennifer

last: Nichols

first: John

middle: C

last: Marioni

first: Carolina

last: Guibentif

first: Berthold

last: Göttgens


title: CRISPR RNA-seq from HepG2 (ENCSR000SKS)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against RPLP0. (RPLP0_BGHcLV03)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Transcriptomic profile of Sialyl-Lewis X (CD15s)+ basophils  and Sialyl Lewis X- basophils

city: Singapore

first: Kaibo

last: Duan

address: 8A Biomedical Grove, Immunos Building, Level 4

country: Singapore

institute: Singapore Immunology Network

summary: Sialyl Lewis X (sLexX or CD15s) is a tetra-saccharide N-acetylneuraminic acid, galactose, fucose and N-acetylglucosamine (NeuAcα2,3Galβ1,4(Fucα1,3)-GlcNAc). CD15s is present on various leukocytes usually as O-linked glycans bound to surface molecules such as PSGL-1, CD43 and CD44. On leukocytes, CD15s plays crucial role in extravasation through the interaction with E-selection expressed ion surface of the activated epithelial blood vessels. We find in approximately 10% of individuals basophils lack CD15s on their surface and these basophils fail to roll on E-selectin coated surfaces. In humans, six α(1,3)-fucosyltransferases (FT), α(1,3)-FTs: FT3/FT4/FT5/FT6/FT7/FT9) catalyses the transfer of fucose to the terminal lactosaminyl glycans giving rise to Lewis X (CD15) and/or sialyl Lewis X (CD15s). To identify which enzyme(s), we perform RNA-sequencing of CD15shigh(CD15s Pos) and CD15slow (CD15s Neg) basophils from 6 individuals.

overall_design: FACS sorting of CD15s Pos and CD15s Neg basophils from PBMCs

first: Kia

middle: J

last: Puan

first: Boris

last: San Luis

first: Nurhashikin

last: Binti Yusof

first: Dilip

last: Kumar

first: Anand

last: Kumar Andiappan

first: Wendy

last: Lee

first: Samanta

last: Cajic

first: Jing

last: De Chan

first: Tobias

last: Döllner

first: Bernett

first: Han

middle: W

last: Hou

first: Erdmann

last: Rapp

first: Michael

last: Poidinger

first: De

middle: Y

last: Wang

first: Olaf

last: Rötzschke