title: Next Generation Sequencing of tumor tissue (4T1 cell) of BALB/c

first: Xin

last: Zheng

address: 1095 Jiefang Avenue, Qiaokou District

department: Union Hospital, Tongji Medical College

institute: Huazhong University of Science and Technology

summary: Immune checkpoint blockade (ICB), particularly programmed death 1 (PD-1) and its ligand (PD-L1), has shown considerable clinical  benefits in patients with various cancers. Many studies show that PD-L1 expression may be biomarkers to help select responders  for anti-PD-1 treatment. Therefore, it is necessary to elucidate the molecular mechanisms that control PD-L1 expression. As a  potential chemosensitizer and anticancer drug, copper combined with disulfiram (DSF) kills tumor cells by regulating multiple  signaling pathways and transcription factors in vitro and in vivo. Here, we showed that DSF increased PD-L1 expression in triple  negative breast cancer (TNBC) cells. Through TCGA data analysis, we found that DNMT1 and IRF7 were highly expressed and the  hypermethylation states in the IRF7 gene body promoter region in TNBC vs normal breast tissue (NBT). Then, we demonstrated  that DSF affected PD-L1 expression via DNMT1-mediated IRF7 hypomethylation in two TNBC cell lines. In vivo experiments, DSF  significantly enhanced the response to PD-1 antibody (Ab) in the triple-negative 4T1 BC mouse model. By analyzing the results of the  tumor tissue sequencing, the DSF joint anti-PD-1 Ab could be a significant activation of anti-tumor immunity. And the inactive state  of immune associated pathways was found to be reversed, such as Th1 and Th2 cell differentiation, antigen processing and  presentation, natural killer cell-mediated cytotoxicity and T cell receptor signal transduction. In conclusion, we found that DSF could  up-regulate PD-L1 in TNBC cells and elucidated its mechanism. Our findings revealed that the combination of DSF and anti-PD-1 Ab  could activate the tumor immune microenvironment (TIME) to show much better antitumor efficacy than monotherapy.

overall_design: mRNA profiles of 12 samples (4T1 tumor tissue, control/DSF treatment/anti-PD-1 treatment/combine, 3 replicates per group)

first: Liling


title: Inhibition of CDK6 using Palbociclib in combination with Ruxolitinib markedly improves myelofibrosis in murine models

status: Public on Nov 05 2021

city: Charlottesville

first: Golam

last: Mohi

state: Virginia

address: 1340 Jefferson Park Ave

department: Biochemistry and Molecular Genetics

country: USA

institute: University of Virginia

type: Expression profiling by high throughput sequencing

summary: Myelofibrosis (MF) is a deadly blood neoplasia that presents the worst prognosis among myeloproliferative neoplasms (MPN). Expression of CDK6 is significantly elevated in MPN/MF hematopoietic progenitor cells. In this study, we investigated the efficacy of CDK4/6 inhibitor Palbociclib alone or in combination with Ruxolitinib in Jak2V617F and MPLW515L murine models of MF. Treatment of Palbociclib alone significantly reduced leukocytosis, splenomegaly and inhibited bone marrow fibrosis in Jak2V617F and MPLW515L mouse models of MF. Combined treatment of Palbociclib and Ruxolitinib resulted in normalization of peripheral blood leukocyte counts, marked reduction of spleen size and abrogation of bone marrow fibrosis in murine models of MF. Mechanistically, we show that Palbociclib treatment or depletion of CDK6 inhibits Aurora kinase, NF-κB and TGF-β signaling pathways in Jak2V617F mutant hematopoietic cells. Overall, our data suggest that Palbociclib in combination with Ruxolitinib may have therapeutic potential for treatment of MF.

overall_design: Examining of effect of palbociclib and ruxolitinib in mice with homozygous JAK2V617F mutation


title: polyA plus RNA-seq from inflammation-experienced regulatory T-cells (ENCSR694KXY)

status: Public on Nov 04 2021

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

institute: ENCODE DCC

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Gene expression profile from airborne Pseudomonas sp. L5B5 strain isolated in Lousal pyrite mine gallery (Portugal)

city: Seville

first: Jose Luis

last: Gonzalez-Pimentel

address: Av. Reina Mercedes 10

country: Spain

institute: IRNAS-CSIC

summary: The pyrite mine of Lousal, Grândola, Portugal, was discovered in 1882 and extensively exploited from 1900 until its closure in 1988 when the mining ores were not viable economically. Aiming at becoming a cultural-touristic center, the mining area was rehabilitated raising a Mining Museum and a Science Centre along with the reopening of a mining gallery for public access. In recent times, aerobiological studies on subterranean environments such as caves, mines and archeological necropolis revealed to be an important source of novel bacteria, from which their biotechnological potential are under study. Here we present a Pseudomonas sp. isolated from the mine air with potential secondary metabolite biosynthesis, resistance to antibiotics and virulence factors.

overall_design: Seven samples from seven different culture and growth conditions

first: Jose

middle: L

first: Irene

last: Dominguez-Moñino


title: R4 RGS subfamily proteins regulates human hematopoietic stem cell engraftment

city: Hong Kong

first: Kathy

middle: YY

last: Chan

address: Rm84041, 6/F, Clinical Science Building, Prince of Wales Hospital, Shatin, N.T.

department: Paediatrics

country: Hong Kong

institute: The Chinese University of Hong Kong

summary: We have employed whole genome microarray expression profiling to identify genes differentially expressed in human cord blood CD34+ cells overexpressing Regulator of G protein Signaling (RGS) proteins.

overall_design: Cord blood CD34+ cells were transduced with RGS1, RGS13 and RGS16-expressing vectors, and genome-wide expression profiling was performed with Affymetrix GeneChips.

first: Kam

middle: T

last: Leung

first: Karen

last: Li

middle: Y


title: TF ChIP-seq from HepG2 (ENCSR695WOH)

type: Genome binding/occupancy profiling by high throughput sequencing

summary:
ChIP-Seq on HepG2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Lung miRNA expression profiling in a mouse model of chronic obstructive pulmonary disease

city: Ultimo

first: Philip

last: Hansbro

address: 15 Broadway

country: Australia

institute: University of Technology Sydney

summary: To profile lung miRNA expression in our mouse model of cigarette smoke-induced chronic obstructive pulmonary disease, we employed the Agilent unrestricted Mouse miRNA (8 x 15k arrays per slide, AMADID Number: 021828, Sanger Version 12) platform as a discovery tool to identify miRNAs of interest in the development of experimental chronic obstructive pulmonary disease. Mice were exposed to cigarette smoke (or room air) for 4, 6, 8, 12 weeks, lungs were excised, and total RNA isolated.

middle: M

first: Richard

last: Kim

first: Emma

last: Beckett

first: Andrew

middle: G

last: Jarnicki

first: Krishna

middle: P

last: Sunkara


title: ChIP-seq of β-Catenin in human hepatocellular carcinoma cells

city: Changchun

first: Xiaoyu

last: Yan

address: Xinmin street 126

country: China

institute: Jilin University

summary: Hypoxia is one of the main driving forces that results in poor outcomes and drug  resistance in hepatocellular carcinoma (HCC). As the critical cellular oxygen sensor,  mitochondria respond to hypoxic stress by sending retrograde signals to the nucleus  that initiate adaptive metabolic responses and maintain the survival of HCC cells.  Increasing evidence suggested autophagy contributes to sustain mitochondrial  metabolic and quality control. Understanding how mitochondria communicate with the  nucleus and alter transcription may provide promising targets for HCC treatment. In this  study, we found mitochondrial undergoes selective degradation by autophagy under  hypoxia. Furthermore, autophagy-activated HDAC6 not only promoted the nuclear  translocation of b-catenin but also increased the affinity of b-catenin to the transcription  repressor chicken ovalbumin upstream promoter-transcription factor 2 (COUP-TF II;),  which suppressed mitochondrial oxidative phosphorylation-related genes transcription.  Our data showed that autophagy served as a critical mediator of integrating mitochondrial  energy metabolism and nuclear transcription. HDAC6 may be a potential target for  reducing the survival of HCC cells by interrupting mitochondrial–nuclear crosstalk

overall_design: SNU-387 cells treated with 1% oxygen for 6h

first: Xianzhi

last: Qu

first: Buhan

last: Liu

first: Yuanxin

last: Zhao

first: Long

last: Xu

first: Sihang

last: Yu

first: Jian

last: Wang

first: Liying

first: Jing

last: Su


title: Glucocorticoids inhibit human hematopoietic stem cell differentiation toward a common ILC precursor

city: Rome

first: Linda

last: Quatrini

address: Via San Paolo 15

department: Immunology

country: Italy

institute: IRCCS Bambino Gesù Pediatric Hospital

summary:
Background: Innate lymphoid cells (ILCs) comprise cytotoxic NK cells and “helper” ILCs (hILCs). Human hILC development is less characterized as compared to NK cells, although all ILCs are developmentally related. It has been reported that the immunosuppressive drugs glucocorticoids (GCs) regulate ILCs function, but whether they control ILCs differentiation from hematopoietic stem cells (HSCs) is unknown.
Objective: We sought to analyze the effect of GCs on ILC development from HSCs.
Methods: We exploited an in vitro system to generate and expand from peripheral blood (PB) HSCs a multipotent CD56+ ILC precursor able to differentiate into NK cells, ILC1s and ILC3s. We also analyzed ex vivo, at different time points, the PB of allogeneic HSC transplantation (HSCT) recipients who were or were not treated with GCs and compared ILC subset reconstitution.
Results: We show that, in vitro, GCs favor the generation of NK cells from myeloid precursors, while they strongly impair lymphoid development. In support to these data, HSCT recipients who had been treated with GCs display a lower number of circulating hILCs, including the ILCP previously identified as a systemic substrate for tissue ILC differentiation.
Conclusions: GCs impair the development of the CD117+ ILCP from CD34+ HSCs, while they do not affect the further steps of ILCP differentiation towards NK cells and hILC subsets. This reflects an association of GC treatment with a marked reduction of circulating hILCs in the recipients of HSCT.

overall_design: CD34+ HSC isolated from mobilized HDs' peripheral blood apheresis were cultured for 10 days with SCF, FLT3L, IL15 and IL7 in the presence or absence of Dexamethasone, then RNA was extracted for RNA-seq. Three biological replicates were generated for each condition (Dex and ctrl).


title: total RNA-seq from activated CD4-positive, alpha-beta memory T cell (ENCSR694AWV)

first: ENCODE

last: DCC

summary:
Memory CD4+ T cell, activated Day 2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from Calu3 (ENCSR692DCF)


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta T cell (ENCSR693AAL)

summary:
H3K36me3 Mint-ChIP-seq of activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: WGBS from kidney (ENCSR749COU)

type: Methylation profiling by high throughput sequencing

summary:
Whole genome bisulfite-seq on 8 week adult mouse kidney

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from activated T-cell (ENCSR957LLW)

summary:
H3K4me1 Mint-ChIP-seq on activated T-cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours..

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from spleen (ENCSR692WNL)

summary:
H3K4me1 ChIP-seq on spleen tissue female adult (61 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from CD4-positive naive resting alpha-beta T cell (ENCSR956ZVR)

summary:
naïve CD4+ T cell(CD45RO- RA+CCR7+)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from kidney (ENCSR956RAI)


title: total RNA-seq from CD8-positive naive resting alpha-beta T cell (ENCSR692DIM)

summary:
naïve CD8+ T cell(CD45RO-CCR7+)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart right ventricle (ENCSR957LSB)

summary:
H3K4me3 ChIP-seq on heart right ventricle tissue female adult (59 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from kidney (ENCSR692ASO)


title: DNase-seq from posterior cingulate gyrus (ENCSR955RQG)


title: BruUV-seq from A673 (ENCSR953XJY)


title: DNase-seq from posterior cingulate gyrus (ENCSR690CVL)


title: DNase-seq from layer of hippocampus (ENCSR688XLI)


title: TF ChIP-seq from middle frontal area 46 (ENCSR689LFJ)

summary:
CTCF ChIP-seq on middle frontal area 46 tissue female adult (83 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from naive B cell (ENCSR685OFR)


title: Histone ChIP-seq from motor neuron (ENCSR682BFG)

summary:
H3K4me1 ChIP-seq on human motor neuron

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from neural crest cell (ENCSR685HSP)

summary:
H3K27ac Mint-ChIP-seq on neural crest cell.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from mesothelial cell of epicardium (ENCSR947ZBW)

summary:
H3K27me3 Mint-ChIP-seq on mesothelial cell of epicardium

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from T-cell (ENCSR934AWQ)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruUV-seq from endothelial cell of umbilical vein (ENCSR936LBO)


title: DNase-seq from kidney (ENCSR939NQH)


title: polyA plus RNA-seq from naive B cell (ENCSR936COT)

summary:
polyA plus RNA-seq of naive B cell.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Shaping of T cell repertoire and function in murine intestine

status: Public on Nov 08 2021

city: Cologne

first: Ali

last: Abdallah

address: Joseph Stelzmann Str. 26

department: Medical Faculty

country: Germany

institute: University of Cologne

summary: NOT PROVIDED; REQUESTED

overall_design: scTCR data of 2 murine large intestinal CD4 effector T cell- and 2 CD4 regulatory T cell populations upon adoptive co-transfer in RAG2 KO mice

first: Moritz

last: Muschaweck

first: Lydia

last: Kopplin

first: Fabio

last: Ticconi

first: Angela

last: Schippers

first: Aida

last: Iljazovic

first: Eric

middle: J

last: Gálvez

first: Norbert

last: Wagner

first: Ivan

last: Costa

first: Till

last: Strowig

first: Oliver

last: Pabst


title: polyA plus RNA-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR940EVD)

summary:
polyA plus RNA-seq of CD4-positive, CD25-positive, alpha-beta regulatory T cell with multiple sclerosis.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from HepG2 (ENCSR681KXT)

summary:
ChIP-Seq on HepG2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from left cerebral cortex (ENCSR946YUY)

summary:
B6Cast F1 PND36 Female L. cortex

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from activated CD4 positive, naive alpha-beta T cell (ENCSR944OIX)

summary:
Naïve CD4+ T cell, activated Day 2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from WTC11 (ENCSR568LRK)

summary:
eGFP-JAZF1 ChIP-seq on human WTC11

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart left ventricle (ENCSR419BNY)

summary:
H3K27ac ChIP-seq on heart left ventricle tissue male adult (66 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from macrophage (ENCSR933GNW)

summary:
H3K27ac ChIP-seq on fragement DNA which is part of BMDM cell with no stimulation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Inhibiting the KIT-Src pathway to ensure differentiation of hematopoietic progenitor requires ARID4B

status: Public on Nov 06 2021

city: Miami

first: Karoline

last: Briegel

state: FL

address: 1600 NW 10th Ave

department: Surgery

institute: University of Miami

summary: This SuperSeries is composed of the SubSeries listed below.

overall_design: Refer to individual Series


title: Histone ChIP-seq from heart left ventricle (ENCSR932QRC)

summary:
H3K27ac ChIP-seq on heart left ventricle tissue male adult (43 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from middle frontal area 46 (ENCSR932XBJ)

summary:
CTCF ChIP-seq on middle frontal area 46 tissue male adult (87 years) with Alzheimer's disease, Cognitive impairment

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from WTC11 (ENCSR418YEV)

summary:
H3K27me3 Mint-ChIP-seq on WTC11

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from motor neuron (ENCSR489LNU)

summary:
H3K27ac ChIP-seq on human motor neuron

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from HepG2 (ENCSR567IOQ)


title: Mint-ChIP-seq from endodermal cell (ENCSR929HHW)

summary:
H3K9me3 Mint-ChIP-seq on endodermal cell originated from H1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from adrenal gland (ENCSR923UKN)


title: total RNA-seq from activated CD4-positive, alpha-beta T cell (ENCSR925GFP)

summary:
CD4+ T cells, activated day 2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from IgD-negative memory B cell (ENCSR929AUK)

summary:
H3K27me3 Mint-ChIP-seq on human IgD-negative memory B cell.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from head of caudate nucleus (ENCSR923BEY)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from heart right ventricle (ENCSR928RNP)

summary:
CTCF TF ChIP-seq on heart right ventricle tissue male adult (43 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from middle frontal area 46 (ENCSR922HGS)

summary:
CTCF TF ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with mild cognitive impairment.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from chondrocyte (ENCSR925IAP)

summary:
H3K27ac Mint-ChIP-seq on chondrocyte

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control ChIP-seq from WTC11 (ENCSR922EQL)

summary:
ChIP-Seq on WTC11

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from adrenal gland (ENCSR920ABO)

summary:
adrenal gland_B6Cast F1 PND4_Male 03_ENC4_cDNA438

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from left cerebral cortex (ENCSR919OSV)

type: Non-coding RNA profiling by high throughput sequencing

summary:
RNA Evaluation mouse PND 18-20 months female left cortex microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR918BGN)

summary:
Control Mint-ChIP-seq on CD4-positive, CD25-positive, alpha-beta regulatory T cell with multiple sclerosis.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR915MTG)


title: Histone ChIP-seq from middle frontal area 46 (ENCSR919ZDE)

summary:
H3K27me3 ChIP-seq on middle frontal area 46 tissue female adult (81 years) with Cognitive impairment

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from macrophage (ENCSR916IRY)

summary:
H3K4me3 ChIP-seq on fragement DNA which is part of BMDM cell with no stimulation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from CD8-positive, alpha-beta memory T cell (ENCSR849RVP)

summary:
polyA plus RNA-seq of CD8-positive, alpha-beta memory T cell with multiple sclerosis.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from endothelial cell of umbilical vein (ENCSR849FAX)


title: TF ChIP-seq from pancreas (ENCSR852BLA)

summary:
CTCF ChIP-seq on pancreas tissue female child (16 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from middle frontal area 46 (ENCSR847OSL)

summary:
CTCF ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from cerebellum (ENCSR913LCG)


title: ATAC-seq from motor neuron (ENCSR913OWV)


title: Histone ChIP-seq from spleen (ENCSR845NXO)

summary:
H3K9me3 ChIP-seq on spleen tissue female adult (61 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCSR846JBB)

summary:
H3K9me3 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (42 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from lung (ENCSR913OPY)


title: Histone ChIP-seq from heart right ventricle (ENCSR843VHQ)

summary:
H3K36me3 ChIP-seq on heart right ventricle tissue male adult (69 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from A549 (ENCSR913JBH)

summary:
eGFP-TP63 ChIP-seq on human A549

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control ChIP-seq from middle frontal area 46 (ENCSR845BPQ)

summary:
Control ChIP-seq on middle frontal area 46 tissue female adult (83 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart left ventricle (ENCSR843ETK)

summary:
H3K9me3 ChIP-seq on heart left ventricle tissue male adult (73 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from HFFc6 (ENCSR841QAC)

summary:
Clonal line 6 derived from hTert immortalized HFF 900 ng

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from layer of hippocampus (ENCSR912TCG)

summary:
hippocampus B6Cast F1 2 months female

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from A673 (ENCSR912SRZ)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from CD4-positive naive resting alpha-beta T cell (ENCSR911XSA)

summary:
naïve CD4+ T cell(CD45RO- RA+CCR7+)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from left cerebral cortex (ENCSR841KGE)

summary:
B6Cast F1 PND4 Male L. cortex

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCSR841MNE)

summary:
H3K4me1 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell..

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from activated regulatory T cell (ENCSR840QUI)


title: Histone ChIP-seq from heart right ventricle (ENCSR907JTW)

summary:
H3K9me3 ChIP-seq on heart right ventricle tissue male adult (61 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from WTC11 (ENCSR905MSY)

summary:
ChIP-Seq on WTC11

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from heart left ventricle (ENCSR904RIA)

summary:
CTCF ChIP-seq on heart left ventricle tissue male adult (61 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from adrenal gland (ENCSR840HMW)


title: ATAC-seq from naive B cell (ENCSR903WVU)


title: Histone ChIP-seq from heart right ventricle (ENCSR839GXY)

summary:
H3K27ac ChIP-seq on heart right ventricle tissue male adult (73 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from heart right ventricle (ENCSR840EYN)

summary:
CTCF TF ChIP-seq on heart right ventricle tissue female adult (59 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart right ventricle (ENCSR902OEF)

summary:
H3K36me3 ChIP-seq on heart right ventricle tissue male adult (66 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: GM DNase-seq from K562 (ENCSR903BAY)


title: Control ChIP-seq from middle frontal area 46 (ENCSR836KPL)

summary:
Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from heart (ENCSR838GNN)

summary:
B6Cast F1 PND25 Male heart

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from adrenal gland (ENCSR837TJD)


title: DNase-seq from left cerebral cortex (ENCSR839DGG)


title: DNase-seq from adrenal gland (ENCSR831ITR)


title: polyA plus RNA-seq from regulatory T cell (ENCSR833JYG)


title: WGBS from heart (ENCSR899RXH)

summary:
Whole genome bisulfite-seq on 8 week adult mouse heart

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from endodermal cell (ENCSR832CNQ)

summary:
H3K27me3 Mint-ChIP-seq on endodermal cell originated from H1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from middle frontal area 46 (ENCSR832TWW)

summary:
CTCF TF ChIP-seq on middle frontal area 46 tissue male adult (82 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from HepG2 (ENCSR830LDY)

summary:
ChIP-Seq on HepG2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCSR830FOW)

summary:
H3K27me3 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (42 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from K562 (ENCSR829UCH)

summary:
eGFP-NFXL1 ChIP-seq on human K562

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from activated T-cell (ENCSR830ALP)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from endodermal cell (ENCSR832USV)

summary:
H3K4me3 Mint-ChIP-seq on endodermal cell originated from H1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from layer of hippocampus (ENCSR744JYO)

summary:
RNA Evaluation mouse PND25 male hippocampus microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from heart left ventricle (ENCSR825NXC)

summary:
CTCF TF ChIP-seq on heart left ventricle tissue female adult (56 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from adrenal gland (ENCSR748DUR)

summary:
adrenal gland_B6Cast F1 PND 18-20 months_Male 03_ENC4_cDNA462

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from motor neuron (ENCSR745TRI)

summary:
H3K4me3 ChIP-seq on human motor neuron

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart right ventricle (ENCSR744VAH)

summary:
H3K4me1 ChIP-seq on heart right ventricle tissue male adult (73 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from right cerebral cortex (ENCSR824YVS)


title: DNase-seq from posterior cingulate gyrus (ENCSR822GDF)


title: total RNA-seq from PC-9 (ENCSR743GKS)

summary:
PC-9 for bru-seq comparison

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control ChIP-seq from middle frontal area 46 (ENCSR745AVM)

summary:
Control ChIP-seq on middle frontal area 46 tissue male adult (82 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from A549 (ENCSR742KNZ)

summary:
eGFP-TFCP2L1 ChIP-seq on human A549

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart right ventricle (ENCSR821DYI)

summary:
H3K27ac ChIP-seq on heart right ventricle tissue female adult (56 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR817WHQ)

summary:
Memory CD8+ cell, activated Day 2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from activated CD8-positive, naive alpha-beta T cell (ENCSR820IIL)

summary:
naive CD8+ cell, activated Day 2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR816TAY)

summary:
polyA plus RNA-seq of CD4-positive, CD25-positive, alpha-beta regulatory T cell.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from HCT116 (ENCSR816PPJ)


title: TF ChIP-seq from WTC11 (ENCSR742DAU)

summary:
eGFP-HMGA2 ChIP-seq on human WTC11

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from middle frontal area 46 (ENCSR814KSK)

summary:
H3K27ac ChIP-seq on middle frontal area 46 tissue male adult (82 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from middle frontal area 46 (ENCSR813KUE)

summary:
CTCF ChIP-seq on dorsolateral prefrontal cortex tissue male adult (78 years) originated from dorsolateral prefrontal cortex

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control Mint-ChIP-seq from CD8-positive naive resting alpha-beta T cell (ENCSR810LRH)

summary:
Control Mint-ChIP-seq on CD8-positive naive resting alpha-beta T cell

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from motor neuron (ENCSR812ZKP)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart right ventricle (ENCSR741HEF)

summary:
H3K27ac ChIP-seq on heart right ventricle tissue male adult (61 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from middle frontal area 46 (ENCSR740GKG)

summary:
CTCF ChIP-seq on dorsolateral prefrontal cortex tissue female adult (86 years) originated from dorsolateral prefrontal cortex

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from naive B cell (ENCSR739VKY)


title: total RNA-seq from HFFc6 (ENCSR735JKB)

summary:
Clonal line 6 derived from hTert immortalized HFF 7 minute fragmentation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from left lung (ENCSR736PZW)

summary:
CTCF ChIP-seq on left lung tissue female child (16 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from gastrocnemius (ENCSR809JHL)

summary:
gastrocnemius B6Cast F1 PND 2 months Male

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from natural killer cell (ENCSR808HWS)


title: WGBS from liver (ENCSR733ZTZ)

summary:
Whole genome bisulfite-seq on 8 week adult mouse liver

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCSR803FCO)

summary:
Control Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from naive B cell (ENCSR804NGX)

summary:
polyA plus RNA-seq of naive B cell with multiple sclerosis.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from heart (ENCSR804CGV)


title: DNase-seq from middle frontal area 46 (ENCSR805RJA)


title: DNase-seq from head of caudate nucleus (ENCSR802NBC)


title: Histone ChIP-seq from heart left ventricle (ENCSR807QBW)

summary:
H3K9me3 ChIP-seq on heart left ventricle tissue female adult (56 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from HepG2 (ENCSR802UCW)

summary:
ChIP-Seq on HepG2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruUV-seq from PC-9 (ENCSR794QYB)


title: total RNA-seq from heart (ENCSR795WFC)

summary:
B6Cast F1 PND 18-20 months Male heart

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from WTC11 (ENCSR807VQT)

summary:
eGFP-ZMAT4 ChIP-seq on human WTC11

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from gastrocnemius (ENCSR791UVS)

summary:
gastrocnemius B6Cast F1 PND 2 months Female

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from K562 (ENCSR805SIA)

summary:
ChIP-Seq on K562

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart right ventricle (ENCSR798MTB)

summary:
H3K9me3 ChIP-seq on heart right ventricle tissue male adult (66 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from inflammation-experienced regulatory T-cells (ENCSR791RPR)


title: total RNA-seq from heart (ENCSR791IFR)

summary:
B6Cast F1 PND36 Female heart

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from WTC11 (ENCSR785ZUI)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from inflammation-experienced regulatory T-cells (ENCSR789TBW)


title: polyA plus RNA-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR667OPL)

summary:
polyA plus RNA-seq of CD4-positive, CD25-positive, alpha-beta regulatory T cell.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from activated CD4-positive, alpha-beta T cell (ENCSR899IVV)

summary:
CD4+ T cells, activated day 7

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCSR897UBR)

summary:
Control Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads , 10 ng/mL Interleukin-2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from kidney (ENCSR664IBN)


title: Mint-ChIP-seq from osteocyte (ENCSR664DNR)

summary:
H3K4me3 Mint-ChIP-seq on osteocyte

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control ChIP-seq from heart right ventricle (ENCSR898WPF)

summary:
Control ChIP-seq on heart right ventricle tissue male adult (66 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from regulatory T cell (ENCSR896QWJ)


title: Mint-ChIP-seq from CD4-positive naive resting alpha-beta T cell (ENCSR662VXY)

summary:
H3K9me3 Mint-ChIP-seq on CD4-positive naive resting alpha-beta T cell male adult (35 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart right ventricle (ENCSR899DSF)

summary:
H3K4me1 ChIP-seq on heart right ventricle tissue male adult (61 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: WGBS from spleen (ENCSR662VFL)

summary:
Whole genome bisulfite-seq on 8 week adult mouse spleen

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCSR998ORB)

summary:
H3K27ac Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (42 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from T-helper 17 cell (ENCSR731KDL)


title: Control ChIP-seq from middle frontal area 46 (ENCSR732BRB)

summary:
Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with Alzheimer's disease, Cognitive impairment.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart left ventricle (ENCSR729AAI)

summary:
H3K4me3 ChIP-seq on heart left ventricle tissue male adult (73 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: WGBS from cerebellum (ENCSR893RHD)

summary:
Whole genome bisulfite-seq on 8 week adult mouse cerebellum

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from left cerebral cortex (ENCSR996TVY)

summary:
B6Cast F1 PND 18-20 months Male L. cortex

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control ChIP-seq from A549 (ENCSR997RBV)

summary:
ChIP-seq on human A549

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from HCT116 (ENCSR998BBI)


title: WGBS from large intestine (ENCSR784VGW)

summary:
Whole genome bisulfite-seq on 8 week adult mouse large intestine

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from progenitor cell of endocrine pancreas (ENCSR729UZM)

summary:
H3K4me3 Mint-ChIP-seq on progenitor cell of endocrine pancreas

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from CD4-positive naive resting alpha-beta T cell (ENCSR994PGV)

summary:
H3K4me3 Mint-ChIP-seq on CD4-positive naive resting alpha-beta T cell male adult (42 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from thymus (ENCSR730MYK)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruUV-seq from MCF-7 (ENCSR997GMY)


title: microRNA-seq from adrenal gland (ENCSR994IRA)

summary:
RNA Evaluation mouse PND 2 months female adrenals microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from colonic mucosa (ENCSR994KTY)


title: WGBS from lung (ENCSR728AGC)

summary:
Whole genome bisulfite-seq on 8 week adult mouse lung

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from layer of hippocampus (ENCSR730GFX)

summary:
RNA Evaluation mouse PND36 female hippocampus microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from activated CD4 positive, naive alpha-beta T cell (ENCSR996OED)

summary:
Naïve CD4+ T cell, activated Day 2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from endothelial cell of umbilical vein (ENCSR993JMV)

summary:
HUVEC for bru-seq comparison

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from CD14-positive monocyte (ENCSR992MUF)

summary:
polyA plus RNA-seq of CD14-positive monocyte.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from activated T-cell (ENCSR993XED)


title: ATAC-seq from activated CD4-positive, alpha-beta T cell (ENCSR991PBP)


title: total RNA-seq from CD8-positive, alpha-beta memory T cell (ENCSR989IFF)

summary:
Memory CD8+ (CD3+CD8+CD45RO+ and CD45RO-CCR7-)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from heart (ENCSR485TDS)

summary:
RNA Evaluation mouse PND 2 months female heart microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from gastrocnemius (ENCSR486QNN)

summary:
gastrocnemius B6Cast F1 PND36 Female

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from regulatory T cell (ENCSR486LMB)


title: microRNA-seq from adrenal gland (ENCSR482GEJ)

summary:
RNA Evaluation mouse PND 18-20 months female adrenals microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from head of caudate nucleus (ENCSR483HUW)


title: Mint-ChIP-seq from WTC11 (ENCSR987PGG)

summary:
H3K9me3 Mint-ChIP-seq on WTC11

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from heart (ENCSR484UKA)

summary:
B6Cast F1 PND10 Male heart

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control ChIP-seq from heart right ventricle (ENCSR481QDJ)

summary:
Control ChIP-seq on heart right ventricle tissue male adult (43 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from regulatory T cell (ENCSR480XMW)


title: DNase-seq from kidney (ENCSR984XSP)


title: total RNA-seq from layer of hippocampus (ENCSR893IBO)

summary:
hippocampus B6Cast F1 PND10 3x female

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from Caco-2 (ENCSR892NYB)


title: polyA plus RNA-seq from regulatory T cell (ENCSR479UTA)


title: polyA plus RNA-seq from naive B cell (ENCSR783SSV)

summary:
polyA plus RNA-seq of naive B cell with multiple sclerosis.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from naive B cell (ENCSR480SNC)


title: Mint-ChIP-seq from CD8-positive naive resting alpha-beta T cell (ENCSR784UID)

summary:
H3K9me3 Mint-ChIP-seq on CD8-positive naive resting alpha-beta T cell male adult (42 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from osteocyte (ENCSR479IAH)

summary:
H3K27ac Mint-ChIP-seq on osteocyte

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from gastrocnemius (ENCSR781NKQ)

summary:
RNA Evaluation mouse PND 2 months female gastrocnemius microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from HCT116 (ENCSR988ITF)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from effector memory CD8-positive, alpha-beta T cell (ENCSR892LQT)


title: TF ChIP-seq from HepG2 (ENCSR784BVD)

summary:
ChIP-Seq on HepG2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from HCT116 (ENCSR477YZA)


title: Control ChIP-seq from heart right ventricle (ENCSR891YGO)

summary:
Control ChIP-seq on heart right ventricle tissue male adult (61 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control ChIP-seq from heart right ventricle (ENCSR481SJM)

summary:
Control ChIP-seq on heart right ventricle tissue male adult (69 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from HCT116 (ENCSR780PLN)


title: Control ChIP-seq from middle frontal area 46 (ENCSR891ZHA)

summary:
Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with mild cognitive impairment

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from HepG2 (ENCSR891KPP)


title: RAMPAGE from foreskin keratinocyte (ENCSR782YGS)

summary:
RAMPAGE on primary keratinocytes in day 3.0 of differentiation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from activated CD8-positive, naive alpha-beta T cell (ENCSR477YSU)


title: Mint-ChIP-seq from T-helper 2 cell (ENCSR477XQW)

summary:
H3K36me3 Mint-ChIP-seq on T-helper 2 cell male adult (35 years) treated with 5 ?g/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR779JLY)

summary:
H3K27me3 Mint-ChIP-seq on CD4-positive, CD25-positive, alpha-beta regulatory T cell with multiple sclerosis..

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from heart (ENCSR984JDC)

summary:
B6Cast F1 PND 2 months Female heart

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from right cardiac atrium (ENCSR983OQS)

summary:
RNA Evaluation human tissue W76 right cardiac atrium microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from middle frontal area 46 (ENCSR778NDP)

summary:
CTCF ChIP-seq on middle frontal area 46 tissue female adult (81 years) with Cognitive impairment

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from activated CD8-positive, naive alpha-beta T cell (ENCSR983HXF)


title: DNase-seq from CD8-positive naive resting alpha-beta T cell (ENCSR889ONK)


title: ATAC-seq from CD8-positive, alpha-beta T cell (ENCSR476VJY)


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCSR980KTW)

summary:
H3K9me3 Mint-ChIP-seq on CD8-positive, alpha-beta memory T cell with multiple sclerosis.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCSR473VWE)

summary:
H3K27ac Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (42 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from motor neuron (ENCSR778FKK)

summary:
H3K4me1 ChIP-seq on human motor neuron

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCSR889IRT)


title: Histone ChIP-seq from spleen (ENCSR472BXE)

summary:
H3K36me3 ChIP-seq on spleen tissue female adult (61 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from CD8-positive naive resting alpha-beta T cell (ENCSR473XAP)

summary:
naïve CD8+ T cell(CD45RO-CCR7+)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control ChIP-seq from heart left ventricle (ENCSR979YKY)

summary:
Control ChIP-seq on heart left ventricle tissue male adult (55 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control ChIP-seq from WTC11 (ENCSR979TXM)

summary:
ChIP-seq on human WTC11

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart right ventricle (ENCSR889BFP)

summary:
H3K9me3 ChIP-seq on heart right ventricle tissue male adult (73 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from middle frontal area 46 (ENCSR979PTL)

summary:
CTCF TF ChIP-seq on middle frontal area 46 tissue male adult (86 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from spleen (ENCSR981USF)

summary:
H3K4me3 ChIP-seq on spleen tissue female adult (61 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from activated T-cell (ENCSR775KMA)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from foreskin keratinocyte (ENCSR469BXX)

summary:
RAMPAGE on primary keratinocytes in day 0.5 of differentiation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from activated CD4-positive, alpha-beta memory T cell (ENCSR777TBF)

summary:
Memory CD4+ T cell, activated Day 2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from activated CD4 positive, naive alpha-beta T cell (ENCSR472BJI)

summary:
H3K27ac Mint-ChIP-seq on activated CD4 positive, naive alpha-beta T cell male adult (42 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from CD8-positive naive resting alpha-beta T cell (ENCSR979SAN)

summary:
H3K4me1 Mint-ChIP-seq on CD8-positive naive resting alpha-beta T cell male adult (42 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from left cerebral cortex (ENCSR774DTO)

summary:
B6Cast F1 PND14 3x Females L. cortex

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from activated T-helper 2 cell (ENCSR777URB)

summary:
H3K36me3 Mint-ChIP-seq on activated T-helper 2 cell male adult (35 years) treated with 5 ?g/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 , anti-CD3 and anti-CD28 coated beads

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart right ventricle (ENCSR468DOT)

summary:
H3K27me3 ChIP-seq on heart right ventricle tissue male adult (43 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from T-cell (ENCSR977LVI)


title: total RNA-seq from gastrocnemius (ENCSR886CRW)

summary:
gastrocnemius B6Cast F1 PND14 3x Females

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from head of caudate nucleus (ENCSR885WWJ)


title: total RNA-seq from layer of hippocampus (ENCSR976DKW)

summary:
hippocampus B6Cast F1 PND10 3x male

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from T-helper 1 cell (ENCSR975JXS)

summary:
H3K4me1 Mint-ChIP-seq on T-helper 1 cell male adult (35 years) treated with 1 ?g/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCSR772HRO)

summary:
H3K9me3 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads , 10 ng/mL Interleukin-2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from spleen (ENCSR466TNQ)

summary:
CTCF ChIP-seq on spleen tissue female adult (61 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart left ventricle (ENCSR884SIF)

summary:
H3K27ac ChIP-seq on heart left ventricle tissue female adult (59 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from heart (ENCSR465PBJ)

summary:
B6Cast F1 PND 18-20 months Female heart

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from CD14-positive monocyte (ENCSR467YDA)

summary:
polyA plus RNA-seq of CD14-positive monocyte.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from mesothelial cell of epicardium (ENCSR726DXL)

summary:
H3K9me3 Mint-ChIP-seq on mesothelial cell of epicardium

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from foreskin keratinocyte (ENCSR773EZK)

summary:
RAMPAGE on primary keratinocytes in day 2.0 of differentiation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from adrenal gland (ENCSR771FRL)

summary:
RNA Evaluation mouse PND 18-20 months male adrenals microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control ChIP-seq from middle frontal area 46 (ENCSR770XRC)

summary:
Control ChIP-seq on middle frontal area 46 tissue female adult (87 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control ChIP-seq from middle frontal area 46 (ENCSR968XKG)

summary:
Control ChIP-seq on middle frontal area 46 tissue female adult (79 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from activated CD4 positive, naive alpha-beta T cell (ENCSR460TAJ)

summary:
H3K4me1 Mint-ChIP-seq on activated CD4 positive, naive alpha-beta T cell male adult (42 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control ChIP-seq from middle frontal area 46 (ENCSR968MKZ)

summary:
Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with Alzheimer's disease.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from mesothelial cell of epicardium (ENCSR884LIO)

summary:
H3K4me3 Mint-ChIP-seq on mesothelial cell of epicardium

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from CD14-positive monocyte (ENCSR968ACN)

summary:
polyA plus RNA-seq of CD14-positive monocyte with multiple sclerosis.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from HepG2 (ENCSR767NGL)

summary:
ChIP-Seq on HepG2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from heart (ENCSR767PMR)

summary:
B6Cast F1 PND14 3x Males heart

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from middle frontal area 46 (ENCSR967QUQ)

summary:
CTCF ChIP-seq on dorsolateral prefrontal cortex tissue male adult (89 years) originated from dorsolateral prefrontal cortex

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from heart left ventricle (ENCSR881YFU)

summary:
CTCF TF ChIP-seq on heart left ventricle tissue male adult (66 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart right ventricle (ENCSR772ABL)

summary:
H3K27ac ChIP-seq on heart right ventricle tissue female adult (59 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from IgD-negative memory B cell (ENCSR975CMV)

summary:
polyA plus RNA-seq of IgD-negative memory B cell with multiple sclerosis.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruUV-seq from K562 (ENCSR974RZE)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart left ventricle (ENCSR461MTO)

summary:
H3K4me1 ChIP-seq on heart left ventricle tissue male adult (73 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from activated regulatory T cell (ENCSR969CUM)


title: polyA plus RNA-seq from immature natural killer cell (ENCSR972TMF)

summary:
polyA plus RNA-seq of immature natural killer cell.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from CD4-positive, alpha-beta memory T cell (ENCSR969XWI)

summary:
polyA plus RNA-seq of CD4-positive, alpha-beta memory T cell with multiple sclerosis.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart left ventricle (ENCSR459BSA)

summary:
H3K27me3 ChIP-seq on heart left ventricle tissue male adult (73 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart left ventricle (ENCSR767HHW)

summary:
H3K36me3 ChIP-seq on heart left ventricle tissue male adult (61 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from regulatory T cell (ENCSR966NFO)

summary:
H3K9me3 Mint-ChIP-seq on regulatory T cell male adult (42 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from motor neuron (ENCSR459PVP)


title: DNase-seq from left cerebral cortex (ENCSR883RWB)


title: RAMPAGE from foreskin keratinocyte (ENCSR967IUK)

summary:
RAMPAGE on primary keratinocytes in day 3.5 of differentiation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from heart (ENCSR878DFT)

summary:
RNA Evaluation mouse PND 2 months male heart microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from left cerebral cortex (ENCSR764GMN)

summary:
B6Cast F1 PND25 Male L. cortex

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from adrenal gland (ENCSR455VIA)


title: TF ChIP-seq from spleen (ENCSR967BSF)

summary:
CTCF ChIP-seq on spleen tissue female adult (41 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from CD8-positive naive resting alpha-beta T cell (ENCSR963NWE)

summary:
H3K4me1 Mint-ChIP-seq on CD8-positive naive resting alpha-beta T cell

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from activated CD4 positive, naive alpha-beta T cell (ENCSR458FZP)

summary:
Naïve CD4+ T cell, activated Day 7

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from middle frontal area 46 (ENCSR966RWA)

summary:
H3K27ac ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with Alzheimer's disease, Cognitive impairment.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from middle frontal area 46 (ENCSR881FDY)

summary:
H3K27me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with Cognitive impairment.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart left ventricle (ENCSR724MJX)

summary:
H3K4me1 ChIP-seq on heart left ventricle tissue male adult (43 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from middle frontal area 46 (ENCSR877OGW)

summary:
H3K4me3 ChIP-seq on middle frontal area 46 tissue male adult (83 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from regulatory T cell (ENCSR874WRY)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from K562 (ENCSR763FNU)

summary:
CGGBP1 ChIP-seq on human K562

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control ChIP-seq from middle frontal area 46 (ENCSR874WOQ)

summary:
Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from immature natural killer cell (ENCSR766TSI)

summary:
polyA plus RNA-seq of immature natural killer cell with multiple sclerosis.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from CD8-positive, alpha-beta memory T cell (ENCSR764EGD)

summary:
polyA plus RNA-seq of CD8-positive, alpha-beta memory T cell with multiple sclerosis.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from middle frontal area 46 (ENCSR452KYY)

summary:
CTCF TF ChIP-seq on middle frontal area 46 tissue male adult (84 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from heart left ventricle (ENCSR578AKX)

summary:
CTCF TF ChIP-seq on heart left ventricle tissue male adult (73 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from middle frontal area 46 (ENCSR763VUL)

summary:
CTCF TF ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with Cognitive impairment.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from immature natural killer cell (ENCSR963EVZ)

summary:
polyA plus RNA-seq of immature natural killer cell.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from HCT116 (ENCSR874GXS)


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCSR966EVW)

summary:
H3K36me3 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (42 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from activated regulatory T cell (ENCSR726DNP)


title: microRNA-seq from layer of hippocampus (ENCSR964USQ)

summary:
RNA Evaluation mouse PND14 male hippocampus microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from CD4-positive naive resting alpha-beta T cell (ENCSR452COS)


title: TF ChIP-seq from middle frontal area 46 (ENCSR724YTA)

summary:
CTCF ChIP-seq on dorsolateral prefrontal cortex tissue male adult (87 years) originated from dorsolateral prefrontal cortex

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruUV-seq from GM12878 (ENCSR872EBO)


title: total RNA-seq from layer of hippocampus (ENCSR576HNP)

summary:
hippocampus B6Cast F1 18 - 20 months male

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control ChIP-seq from HepG2 (ENCSR661ZUK)

summary:
ChIP-Seq on HepG2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from activated B cell (ENCSR659SFK)


title: DNase-seq from lung (ENCSR720KMQ)


title: DNase-seq from right cerebral cortex (ENCSR450ROJ)


title: TF ChIP-seq from WTC11 (ENCSR963EQY)

summary:
ChIP-Seq on WTC11

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from middle frontal area 46 (ENCSR870NCA)

summary:
H3K27me3 ChIP-seq on middle frontal area 46 tissue male adult (84 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCSR722KGL)

summary:
H3K4me1 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (42 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruUV-seq from Calu3 (ENCSR870SVX)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from lung (ENCSR575YLW)


title: TF ChIP-seq from HepG2 (ENCSR658UQD)


title: Control ChIP-seq from middle frontal area 46 (ENCSR869KBA)

summary:
Control ChIP-seq on middle frontal area 46 tissue female adult (89 years) with Alzheimer's disease

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: ATAC-seq from activated CD8-positive, alpha-beta T cell (ENCSR718HWW)


title: BruUV-seq from Caco-2 (ENCSR712JHP)


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR865FTW)

summary:
H3K36me3 Mint-ChIP-seq on CD4-positive, CD25-positive, alpha-beta regulatory T cell with multiple sclerosis..

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCSR762VGM)


title: Histone ChIP-seq from mucosa of descending colon (ENCSR869XBX)

summary:
H3K4me3 ChIP-seq on mucosa of descending colon tissue male adult (40 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruUV-seq from MCF 10A (ENCSR870JRO)


title: DNase-seq from cerebellum (ENCSR448KDU)


title: Mint-ChIP-seq from activated T-helper 1 cell (ENCSR575TRE)

summary:
H3K27ac Mint-ChIP-seq on activated T-helper 1 cell male adult (35 years) treated with 1 ?g/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta , anti-CD3 and anti-CD28 coated beads

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from T-helper 1 cell (ENCSR718FWH)

summary:
H3K9me3 Mint-ChIP-seq on T-helper 1 cell male adult (35 years) treated with 1 ?g/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: RAMPAGE from foreskin keratinocyte (ENCSR717OAA)

summary:
RAMPAGE on primary keratinocytes in day 5.5 of differentiation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from gastrocnemius (ENCSR658KLA)

summary:
RNA Evaluation mouse PND25 male gastrocnemius microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from IgD-negative memory B cell (ENCSR713DXI)

summary:
polyA plus RNA-seq of IgD-negative memory B cell.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: GM DNase-seq from K562 (ENCSR762CZT)


title: TF ChIP-seq from HepG2 (ENCSR574YRZ)


title: DNase-seq from heart (ENCSR657WHR)


title: DNase-seq from mesothelial cell of epicardium (ENCSR658EHM)


title: polyA plus RNA-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR761ZWF)

summary:
polyA plus RNA-seq of CD4-positive, CD25-positive, alpha-beta regulatory T cell with multiple sclerosis.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control ChIP-seq from K562 (ENCSR758JMV)

summary:
ChIP-Seq on K562

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from motor neuron (ENCSR962OTG)

summary:
H3K4me3 ChIP-seq on human motor neuron

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from left cerebral cortex (ENCSR757VTG)

summary:
B6Cast F1 PND4 Female L. cortex

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from middle frontal area 46 (ENCSR865CYW)


title: polyA plus RNA-seq from activated regulatory T cell (ENCSR711SJN)


title: Histone ChIP-seq from colonic mucosa (ENCSR574USP)

summary:
H3K4me3 ChIP-seq on colonic mucosa tissue female adult (41 years)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from left cerebral cortex (ENCSR712PLG)

summary:
B6Cast F1 PND 18-20 months Female L. cortex

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from activated T-helper 1 cell (ENCSR864OKB)

summary:
H3K36me3 Mint-ChIP-seq on activated T-helper 1 cell male adult (35 years) treated with 1 ?g/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta , anti-CD3 and anti-CD28 coated beads

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from left cerebral cortex (ENCSR864IYS)

summary:
B6Cast F1 PND36 Male L. cortex

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from inflammation-experienced regulatory T-cells (ENCSR757VAW)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from heart (ENCSR573TZD)

summary:
B6Cast F1 PND14 3x Females heart

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from CD8-positive naive resting alpha-beta T cell (ENCSR446PXV)

summary:
H3K27ac Mint-ChIP-seq on CD8-positive naive resting alpha-beta T cell

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from layer of hippocampus (ENCSR657KLT)

summary:
RNA Evaluation mouse PND10 female hippocampus microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from activated CD8-positive, naive alpha-beta T cell (ENCSR572HUG)


title: TF ChIP-seq from HepG2 (ENCSR710EFA)

summary:
ChIP-Seq on HepG2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: TF ChIP-seq from HepG2 (ENCSR756CJS)


title: DNase-seq from urinary bladder (ENCSR863SWY)


title: microRNA-seq from gastrocnemius (ENCSR656EWH)

summary:
RNA Evaluation mouse PND 18-20 months female gastrocnemius microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Mint-ChIP-seq from CD8-positive naive resting alpha-beta T cell (ENCSR654ZYD)

summary:
H3K36me3 Mint-ChIP-seq on CD8-positive naive resting alpha-beta T cell

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCSR755ARW)

summary:
polyA plus RNA-seq of naive thymus-derived CD4-positive, alpha-beta T cell.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Histone ChIP-seq from heart left ventricle (ENCSR655QXR)

summary:
H3K27me3 ChIP-seq on heart left ventricle tissue male adult (61 years).

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf