title: total RNA-seq from WTC11 (ENCSR723OPL)

summary:
Homo sapiens cardiomyocytes in vitro differentiated originated from WTC11 cells, 4 days after differentiation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR297ONN)

status: Public on Dec 04 2022

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

type: Expression profiling by high throughput sequencing

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against CAND1. (CAND1-BGHcLV27)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from left cerebral cortex (ENCSR299GYD)

summary:
5xFAD X Cast L. cortex (brain)_8-10 months male

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR719PHY)

type: Non-coding RNA profiling by high throughput sequencing

summary:
RNA Evaluation human Rush brain microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from A549 (ENCSR719GYP)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR296RWI)

summary:
human_brain_Rush ID_E8949399_BS187_ENC4_cDNA741

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR292TYT)

summary:
human_brain_Rush ID_6341028_BS46_ENC4_cDNA656

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR718YUW)

summary:
human_brain_Rush ID_E1097236_BS118_ENC4_cDNA680

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR706QGC)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against RNH1. (RNH1-BGHcLV32)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR293VAR)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against SPAG9. (SPAG9-BGHcLV31)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR706NYL)

summary:
human_brain_Rush ID_E2987202_BS122_ENC4_cDNA684

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from WTC11 (ENCSR291HNO)

summary:
RNA Evaluation human WTC11 cell line microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR287DHQ)

summary:
Homo sapiens K562 treated with Bortezomib for 12 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-seq from HCT116 (ENCSR703UYN)

summary:
PRO-seq in RAD21_U

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR282UMY)

summary:
human_brain_Rush ID_E2962456_BS145_ENC4_cDNA695

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR277QAN)

summary:
human_brain_Rush ID_E3348003_BS123_ENC4_cDNA685

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR290IHM)

summary:
human_brain_Rush ID_5194210_BS19_ENC4_cDNA654

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR292NHK)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against RPS15A. (RPS15A-BGKcLV30)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR703FPC)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against RNASEH2A. (RNASEH2A-BGHcLV32)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from heart (ENCSR289DPI)

summary:
RNA Evaluation mouse PND4 male heart microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR277ECT)

summary:
RNA Evaluation human Rush brain microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR275JSL)

summary:
human_brain_Rush ID_1764669_BS90_ENC4_cDNA667

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from T-helper 17 cell (ENCSR276QGJ)

summary:
h.CD4.Th17_DONOR 5: 0 hour no activation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR274ESZ)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against ACO2. (ACO2-BGKcLV26)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from heart (ENCSR998JES)

summary:
RNA Evaluation mouse PND10 male heart microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from HCT116 (ENCSR273ORE)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in BRD4_T.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR271ZAB)

summary:
Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT-BGKcLV33)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR997XXK)

summary:
human_brain_Rush ID_E1652886_BS174_ENC4_cDNA728

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from activated T-cell (ENCSR995GRL)

summary:
CD3+_DONOR 4: 72 Hour T cell activation (CD3.CD28 beads) + 50U/ml IL-2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruChase-seq from PC-9 (ENCSR699DUJ)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR700JXJ)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against AHCYL2. (AHCYL2-BGKcLV26)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR995XEP)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CCT4. (CCT4-BGKcLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR992YRL)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against DDX18. (DDX18-BGHcLV29)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR985WSV)

summary:
human_brain_Rush ID_E7431498_BS183_ENC4_cDNA737

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from HCT116 (ENCSR990FJB)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in CDK7_U.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR988ILZ)


title: microRNA-seq from A673 (ENCSR982DED)

summary:
RNA Evaluation human A673 cell line microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR975PQJ)


title: CRISPR RNA-seq from HepG2 (ENCSR981TQN)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against SEC63. (SEC63-BGHcLV31)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR974KDR)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against CARHSP1. (CARHSP1-BGHcLV27)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from motor neuron (ENCSR701YIC)

summary:
RNA-seq on human motor neuron cell lines

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR971FJU)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against SMG9. (SMG9-BGKcLV33)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR970WRV)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CPSF3. (CPSF3-BGKcLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from motor neuron (ENCSR967DSJ)


title: microRNA-seq from gastrocnemius (ENCSR968IVY)

summary:
RNA Evaluation 5xFAD/Cast mouse female gastrocnemius microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR965OKL)

summary:
human_brain_Rush ID_E2229963_BS176_ENC4_cDNA730

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR965INY)

summary:
RNA Evaluation human memory CD8+ T cell (activated day 7) microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from activated T-helper 17 cell (ENCSR964JRR)

summary:
h.CD4.Th17_DONOR 6: 72 Hour T cell activation (CD3.CD28 beads) + 50U/ml IL-2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruChase-seq from A673 (ENCSR971YFG)


title: total RNA-seq from middle frontal area 46 (ENCSR959ENR)

summary:
human_brain_Rush ID_E5841627_BS204_ENC4_cDNA759

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from gastrocnemius (ENCSR960ZZW)

summary:
B6 X Cast gastrocnemius_8-10 months female

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from heart (ENCSR967IKT)

summary:
5xFAD X Cast heart_8-10 months female

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR958OFR)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against CPSF3. (CPSF3-BGHcLV29)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR994NGU)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against RPS8. (RPS8-BGHcLV31)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR953VMB)

summary:
Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHcLV25)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR957GVE)

summary:
Homo sapiens K562 treated with Panobinostat for 12 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-seq from HCT116 (ENCSR954XDE)

summary:
PRO-seq in CDK7_T

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR949UTT)

summary:
human_brain_Rush ID_8282759_BS106_ENC4_cDNA660

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR950KYU)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CLNS1A. (CLNS1A-BGKcLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR954VJD)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against SAP30BP. (SAP30BP-BGHcLV31)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR950YTM)

summary:
Homo sapiens K562 treated with Vorinostat for 48 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR949BBZ)

summary:
Homo sapiens K562 treated with Galeterone for 12 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR947EFJ)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against API5. (API5-BGKcLV26)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-seq from HCT116 (ENCSR945WVF)

summary:
PRO-seq in POLR2A_T

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR944PAO)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CDV3. (CDV3-BGKcLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from HCT116 (ENCSR945UXU)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR944KLG)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against C1QBP. (C1QBP-BGHcLV27)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from Calu3 (ENCSR935RNW)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in CALU3.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from Calu3 (ENCSR934NMC)

summary:
RNA Evaluation human Calu-3 cell line microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from HCT116 (ENCSR932TRR)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in SMARCA5_U.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR929YET)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against AIMP1. (AIMP1-BGKcLV26)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-seq from HCT116 (ENCSR929NJH)

summary:
PRO-seq in SMARCA5_U

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR925SFP)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against RPS21. (RPS21-BGKcLV33)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from natural killer cell (ENCSR927KSI)

summary:
PBMC (NK MACS sort)NK

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR928XFZ)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against RPS28. (RPS28-BGKcLV33)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR925POR)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against METTL1. (METTL1-BGHcLV24)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR951DTJ)

summary:
human_brain_Rush ID_E1302730_BS147_ENC4_cDNA697

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR924AVW)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against ADK. (ADK-BGHcLV25)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from activated T-cell (ENCSR925DZW)

summary:
CD3+_DONOR 1: 72 Hour T cell activation (CD3.CD28 beads) + 50U/ml IL-2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR922XPO)

summary:
human_brain_Rush ID_E8277356_BS128_ENC4_cDNA690

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR921IQU)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against BZW2. (BZW2-BGHcLV27)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR920OZR)

summary:
human_brain_Rush ID_E9972216_BS194_ENC4_cDNA748

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR918MUU)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against CNOT2. (CNOT2-BGHcLV24)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR918HAI)

summary:
RNA Evaluation human Rush brain microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR914PRM)

summary:
human_brain_Rush ID_E8973904_BS189_ENC4_cDNA743

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from WTC11 (ENCSR914ALB)

summary:
Homo sapiens cardiomyocytes in vitro differentiated originated from WTC11 cells, 6 days after differentiation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR911ITT)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against DCP1A. (DCP1A-BGKcLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruChase-seq from MCF 10A (ENCSR917MFV)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR911CLD)

summary:
Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHcLV32-B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from HCT116 (ENCSR914PUX)


title: long read RNA-seq from myotube (ENCSR907NKV)

summary:
C2C12 myotube

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from HCT116 (ENCSR906UFM)


title: total RNA-seq from K562 (ENCSR900IJI)

summary:
Homo sapiens K562 treated with Bortezomib for 24 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from HCT116 (ENCSR900SLO)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in MED14_U.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR900GQL)

summary:
Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT-BGKcLV26)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR899RVY)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CLTC. (CLTC-BGKcLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR900GIC)

summary:
human_brain_Rush ID_E2501226_BS144_ENC4_cDNA694

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from heart (ENCSR911AIY)

summary:
RNA Evaluation mouse PND10 female heart microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: polyA plus RNA-seq from layer of hippocampus (ENCSR898LNL)

summary:
Hippocampus from 6 mo C57BL/6 male

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR897QAH)


title: total RNA-seq from Calu3 (ENCSR897JEH)

summary:
Calu3 for bru-seq comparison

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR895MKD)


title: total RNA-seq from B cell (ENCSR896YYL)

summary:
PBMCCD19+ (B cells) resting

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from motor neuron (ENCSR892WHX)

summary:
RNA-seq on human motor neuron cell lines

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR892ZGW)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against AGFG1. (AGFG1-BGHcLV25)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from layer of hippocampus (ENCSR886NLC)

summary:
5xFAD X Cast hippocampus_8-10 months female

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR887XCL)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CPSF2. (CPSF2-BGKcLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-seq from HCT116 (ENCSR889SZI)

summary:
PRO-seq in CTCF_U

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR882NWV)

summary:
Homo sapiens K562 treated with C646 for 24 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR882HXI)

summary:
human_brain_Rush ID_E7404786_BS166_ENC4_cDNA716

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from Caco-2 (ENCSR469WPG)

summary:
Caco-2 for bru-seq comparison

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from K562 (ENCSR882DWM)

summary:
CoPRO experiment. A run-on assay was performed on captured nascent RNA with cap state selection. In this experiment, only uncapped nascent RNA was selected and no PCR amplification was done.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR462MFN)

summary:
Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHcLV29)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from left cerebral cortex (ENCSR879VZJ)

summary:
B6 X Cast L. cortex (brain)_8-10 months male

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR461TSM)

summary:
RNA Evaluation human Rush brain microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR878TRK)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against SAMHD1. (SAMHD1-BGHcLV31)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from OCI-LY7 (ENCSR459AVM)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR877CJJ)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CSE1L. (CSE1L-BGKcLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR454GQC)

summary:
human_brain_Rush ID_E3486019_BS181_ENC4_cDNA735

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR876IJP)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CARHSP1. (CARHSP1-BGKcLV26)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR452TFV)

summary:
Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHcLV31)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR875UMY)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against CDV3. (CDV3-BGHcLV29)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR870TGO)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against ACTN4. (ACTN4-BGKcLV26)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR456UAR)


title: BruChase-seq from Calu3 (ENCSR456HKF)


title: total RNA-seq from K562 (ENCSR451LDB)

summary:
Homo sapiens K562 treated with C646 for 12 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR875MVZ)

summary:
human_brain_Rush ID_4368365_BS62_ENC4_cDNA651

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR452BSJ)

summary:
human_brain_Rush ID_E4781406_BS151_ENC4_cDNA701

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR869YRR)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against SMG8. (SMG8-BGKcLV33)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR447WLU)

summary:
human_brain_Rush ID_E2129371_BS142_ENC4_cDNA692

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR447ARO)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against SF3B2. (SF3B2-BGKcLV33)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from HCT116 (ENCSR867EQV)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in SUPT16H_T.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from HCT116 (ENCSR871CUV)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in CDK7_T.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR866UOA)

summary:
Homo sapiens K562 treated with Panobinostat for 4 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from HL-60 (ENCSR865XJM)

summary:
RNA Evaluation HL-60 derived M2 macrophages (differentiated 24hr) microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR446QMB)

summary:
human_brain_Rush ID_E2728434_BS149_ENC4_cDNA749

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR863VFU)

summary:
human_brain_Rush ID_5115600_BS16_ENC4_cDNA653

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR458FLK)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against SNW1. (SNW1-BGKcLV33)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR863EIY)

summary:
human_brain_Rush ID_E1554367_BS148_ENC4_cDNA698

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR454MWR)

summary:
human_brain_Rush ID_E4205723_BS199_ENC4_cDNA754

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR439PRN)

summary:
human_brain_Rush ID_E1182310_BS120_ENC4_cDNA682

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR870EBU)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against SAMHD1. (SAMHD1-BGKcLV33)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from heart (ENCSR858AUW)

summary:
RNA Evaluation mouse PND14 months female heart microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from HCT116 (ENCSR877LIZ)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from A673 (ENCSR436EAB)


title: total RNA-seq from K562 (ENCSR860RDT)

summary:
Homo sapiens K562 treated with DMSO for 48 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR443ASQ)

summary:
human_brain_Rush ID_E8583444_BS184_ENC4_cDNA738

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from heart (ENCSR846QZK)

summary:
RNA Evaluation mouse PND25 months female heart microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR435YKS)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against CSDE1. (CSDE1-BGHcLV29)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR844RSF)

summary:
Homo sapiens K562 treated with Vorinostat for 24 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from heart (ENCSR840QPN)

summary:
RNA Evaluation mouse PND36 months male heart microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR428BYN)

summary:
RNA Evaluation human Rush brain microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PAS-seq from left cerebral cortex (ENCSR432LIX)

summary:
Mouse cortex QuantSeq

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from left cerebral cortex (ENCSR419RHJ)

summary:
RNA Evaluation mouse PND4 male left cortex microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: long read RNA-seq from C2C12 (ENCSR418ZYU)

summary:
Myoblast cell line derived from thigh muscle of C3H mice after crush injury

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from T-helper 17 cell (ENCSR831GLL)

summary:
h.CD4.Th17_DONOR 6: 0 hour no activation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from gastrocnemius (ENCSR418QXY)

summary:
RNA Evaluation 5xFAD/Cast mouse male gastrocnemius microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR828XJV)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against APEH. (APEH-BGHcLV27)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR826FNO)

summary:
human_brain_Rush ID_E7148318_BS165_ENC4_cDNA715

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from left cerebral cortex (ENCSR429KRO)

summary:
RNA Evaluation mouse PND14 female left cortex microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR426AVN)


title: CRISPR RNA-seq from K562 (ENCSR825RYR)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CWC15. (CWC15-BGKcLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from A549 (ENCSR414IGI)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR411PXI)


title: PRO-seq from HCT116 (ENCSR404RZX)

summary:
PRO-seq in BRD4_U

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from natural killer cell (ENCSR842NDO)

summary:
h.CD56+_DONOR 3: 72 hour activation IL-12+IL-15+IL-18, 100ng/ml

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from HCT116 (ENCSR423WIK)


title: CRISPR RNA-seq from HepG2 (ENCSR402BZZ)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against SF3A2. (SF3A2-BGHcLV24)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR832YWU)

summary:
human_brain_Rush ID_E3291783_BS154_ENC4_cDNA704

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR418WMG)

summary:
human_brain_Rush ID_E8792932_BS215_ENC4_cDNA770

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR854EBO)


title: microRNA-seq from activated CD8-positive, alpha-beta T cell (ENCSR828OKX)

summary:
RNA Evaluation human CD8+ T cells (activated day 2) microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from MCF 10A (ENCSR815NTL)

summary:
MFC 10A for bru-seq comparison

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR424JNK)

summary:
RNA Evaluation human Rush brain microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR840HSL)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against ADAT3. (ADAT3-BGHcLV24)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from adrenal gland (ENCSR820VUG)

summary:
RNA Evaluation 5xFAD/Cast mouse female adrenal microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR821KIN)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against RBM14. (RBM14-BGKcLV30)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from left cerebral cortex (ENCSR401RSJ)

summary:
RNA Evaluation mouse PND36 male left cortex microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from activated B cell (ENCSR398REC)

summary:
PBMCCD19+ (B cells) activatedCPG ODN2006 24h

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR397GDU)

summary:
human_brain_Rush ID_E9876975_BS193_ENC4_cDNA747

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from gastrocnemius (ENCSR815DQP)

summary:
RNA Evaluation mouse PND4 male gastrocnemius microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR395DKP)

summary:
human_brain_Rush ID_7204277_BS116_ENC4_cDNA666

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR812JYP)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against ADK. (ADK-BGKcLV26)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR394ZSF)

summary:
human_brain_Rush ID_7204277_BS105_ENC4_cDNA659

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR394HJK)

summary:
human_brain_Rush ID_E8947111_BS186_ENC4_cDNA740

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR810ZKJ)

summary:
Homo sapiens K562 treated with JQ1 for 24 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR390MBR)

summary:
human_brain_Rush ID_E2351217_BS143_ENC4_cDNA693

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from natural killer cell (ENCSR388NNP)

summary:
h.CD56+_DONOR 2: 0 hour no activation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from HCT116 (ENCSR810EZV)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from activated CD4-positive, alpha-beta memory T cell (ENCSR384ONW)

summary:
RNA Evaluation human memory CD4+ T cells (activated day 2) microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from heart (ENCSR389GJZ)

summary:
B6 X Cast heart_8-10 months male

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from HCT116 (ENCSR384BVS)


title: CRISPR RNA-seq from K562 (ENCSR383FCI)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CD2BP2. (CD2BP2-BGKcLV33)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR382EIX)

summary:
RNA Evaluation human Rush brain microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR806HCA)

summary:
Homo sapiens K562 treated with GSK J4 for 12 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from HCT116 (ENCSR801TQK)


title: microRNA-seq from middle frontal area 46 (ENCSR379NYN)


title: total RNA-seq from layer of hippocampus (ENCSR801JDZ)

summary:
B6 X Cast hippocampus_8-10 months male

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from HCT116 (ENCSR808SOG)


title: total RNA-seq from middle frontal area 46 (ENCSR378WUC)

summary:
human_brain_Rush ID_E6413534_BS158_ENC4_cDNA708

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCSR389QNT)

summary:
RNA Evaluation human naive CD4+ T cell microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR379BAF)

summary:
Homo sapiens K562 treated with MB-3 for 48 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: long read RNA-seq from forelimb (ENCSR804QMV)

summary:
Mus musculus strain B6NCrl embryo (11 days) forelimb tissue

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruChase-seq from A673 (ENCSR380EZD)


title: total RNA-seq from middle frontal area 46 (ENCSR377MTB)

summary:
human_brain_Rush ID_E8895621_BS185_ENC4_cDNA739

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR800PJQ)

summary:
human_brain_Rush ID_E9254359_BS216_ENC4_cDNA771

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR378JSK)


title: total RNA-seq from motor neuron (ENCSR373XVN)

summary:
RNA-seq on human motor neuron cell lines

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR369MDF)

summary:
Homo sapiens K562 treated with JQ1 for 4 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from MCF 10A (ENCSR799DGV)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in MCF10A.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR798RDG)

summary:
Homo sapiens K562 treated with GSK J4 for 48 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from left cerebral cortex (ENCSR367RBT)

summary:
RNA Evaluation 5xFAD/Cast mouse female left cortex microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from T-cell (ENCSR798USR)

summary:
CD3+_DONOR 1: 0 hour no activation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR367JOT)


title: total RNA-seq from middle frontal area 46 (ENCSR795GYH)

summary:
human_brain_Rush ID_2705751_BS113_ENC4_cDNA663

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from HCT116 (ENCSR366XGV)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR795ARM)

summary:
RNA Evaluation human Rush brain microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR365ARV)

summary:
human_brain_Rush ID_3453103_BS49_ENC4_cDNA649

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR366LFQ)

summary:
human_brain_Rush ID_2518687_BS93_ENC4_cDNA670

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR793SPM)

summary:
human_brain_Rush ID_E7908427_BS211_ENC4_cDNA766

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from heart (ENCSR794QRE)

summary:
RNA Evaluation 5xFAD/Cast mouse female heart microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR789PJB)

summary:
human_brain_Rush ID_E3253149_BS96_ENC4_cDNA673

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR363NMO)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against AHCYL2. (AHCYL2-BGHcLV25)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR785SZL)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against RUVBL1. (RUVBL1-BGHcLV31)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR363EVQ)

summary:
human_brain_Rush ID_E9687283_BS217_ENC4_cDNA772

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR363HQX)

summary:
Homo sapiens K562 treated with C646 for 48 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR785JUR)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against APEH. (APEH-BGKcLV26)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-seq from HCT116 (ENCSR349AFH)

summary:
PRO-seq in CDK7_U

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from HL-60 (ENCSR350OBF)

summary:
RNA Evaluation HL-60 derived M1 macrophages (differentiated 24hr) microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from PC-9 (ENCSR349RCY)

summary:
RNA Evaluation human PC-9 cell line microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from motor neuron (ENCSR350OKU)

summary:
RNA-seq on human motor neuron cell lines

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from HCT116 (ENCSR360MUR)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in BRD4_U.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR780UNO)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against SKIV2L2. (SKIV2L2-BGHcLV31)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from Caco-2 (ENCSR346ANR)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR347NKX)

summary:
Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT-BGKcLV30)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from mesothelial cell of epicardium (ENCSR341PLF)

summary:
RNA Evaluation WA09-derived epicardium microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from WTC11 (ENCSR771NRY)

summary:
Homo sapiens cardiomyocytes in vitro differentiated originated from WTC11 cells, 3 days after differentiation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR340ZLQ)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against ATP5A1. (ATP5A1-BGHcLV29)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR340QZY)

summary:
Homo sapiens K562 treated with AR-42 for 12 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-seq from HCT116 (ENCSR351QUY)

summary:
PRO-seq in MED14_T

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from WTC11 (ENCSR771DEX)

summary:
Homo sapiens cardiomyocytes in vitro differentiated originated from WTC11 cells, 1 days after differentiation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR339XFB)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against CPSF7. (CPSF7-BGHcLV29)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR769VPS)

summary:
RNA Evaluation human Rush brain microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Bru-seq from mammary epithelial cell (ENCSR771GZH)


title: total RNA-seq from activated T-helper 2 cell (ENCSR341VFG)

summary:
CD4 N (RA+ MACS sort)Th2 (aIFNg 5ug/ml+IL-4 100ng/ml)(day 13)+beads (1:3) day 1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from WTC11 (ENCSR758MWM)

summary:
Homo sapiens cardiomyocytes in vitro differentiated originated from WTC11 cells, 2 days after differentiation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR339NMQ)

summary:
human_brain_Rush ID_8074960_BS43_ENC4_cDNA658

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruChase-seq from MCF 10A (ENCSR780VOL)


title: PRO-cap from K562 (ENCSR756TPG)

summary:
CoPRO experiment. A run-on assay was performed on captured nascent RNA with cap state selection. In this experiment, both capped and uncapped nascent RNA was selected and no PCR amplification was done.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: long read RNA-seq from left cerebral cortex (ENCSR340GWV)

summary:
Cortex1 from 6 mo C57BL/6 male

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR339GOD)

summary:
human_brain_Rush ID_E5352389_BS201_ENC4_cDNA756

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR758BAT)

summary:
Homo sapiens K562 treated with C646 for 4 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR778XFE)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against BMS1. (BMS1-BGKcLV33)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR333JNM)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against RPL29. (RPL29-BGHcLV32)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR755FNG)

summary:
human_brain_Rush ID_E7461192_BS125_ENC4_cDNA687

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR777KAR)

summary:
human_brain_Rush ID_E5448057_BS100_ENC4_cDNA677

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR776PQP)

summary:
human_brain_Rush ID_E8392249_BS212_ENC4_cDNA767

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR329UEC)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against SCAF8. (SCAF8-BGKcLV33)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruChase-seq from PC-9 (ENCSR340JNN)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR328DHD)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against ATP5A1. (ATP5A1-BGKcLV26)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from natural killer cell (ENCSR745APD)

summary:
h.CD56+_DONOR 2: 72 hour activation IL-12+IL-15+IL-18, 100ng/ml

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR757ALD)

summary:
RNA Evaluation human Rush brain microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR323YXV)

summary:
human_brain_Rush ID_E5108249_BS182_ENC4_cDNA736

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR323RFB)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CDC42EP4. (CDC42EP4-BGKcLV33)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR755DOV)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against CTTN. (CTTN-BGHcLV29)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from left cerebral cortex (ENCSR332HPA)

summary:
RNA Evaluation mouse PND10 female left cortex microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR753BWD)

summary:
human_brain_Rush ID_E4946143_BS152_ENC4_cDNA702

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR331MLG)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CLASP2. (CLASP2-BGKcLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR738ZHN)

summary:
Homo sapiens K562 treated with Crizotinib for 12 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from WTC11 (ENCSR738IHB)

summary:
Homo sapiens cardiomyocytes in vitro differentiated originated from WTC11 cells, 5 days after differentiation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR737OPD)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against RPRD1B. (RPRD1B-BGKcLV30)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR330VES)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against SCAF8. (SCAF8-BGHcLV31)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR735FXX)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against ALDOA. (ALDOA-BGHcLV27)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCSR317HKT)

summary:
CD4 N (RA+ MACS sort)Th0 (no diff Cytokines)(day 14)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from myotube (ENCSR312YTR)

summary:
RNA Evaluation C2C12 differentiated for 72 hours microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR747MHD)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against RPRD1B. (RPRD1B-BGHcLV32)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR308AGV)


title: total RNA-seq from middle frontal area 46 (ENCSR307PZR)

summary:
human_brain_Rush ID_E8505753_BS213_ENC4_cDNA768

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR745KNE)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against SEC23IP. (SEC23IP-BGHcLV31)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from left cerebral cortex (ENCSR326SPS)

summary:
RNA Evaluation mouse PND25 female left cortex microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from A549 (ENCSR307PVU)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR325BJP)

summary:
Homo sapiens K562 treated with Galeterone for 48 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR323SDL)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CD3EAP. (CD3EAP-BGKcLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR740WAG)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against CPSF4. (CPSF4-BGHcLV24)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR733DBA)

summary:
human_brain_Rush ID_E9696602_BS191_ENC4_cDNA745

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR739ZMF)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against RBM25. (RBM25-BGHcLV32)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR320AJD)

summary:
human_brain_Rush ID_E6422513_BS206_ENC4_cDNA761

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR727WPW)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against SEPT11. (SEPT11-BGKcLV33)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from motor neuron (ENCSR319GRO)

summary:
RNA-seq on human motor neuron cell lines

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR728FFT)

summary:
human_brain_Rush ID_E3648984_BS196_ENC4_cDNA751

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from left cerebral cortex (ENCSR305JTG)

summary:
RNA Evaluation mouse PND36 female left cortex microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from left cerebral cortex (ENCSR268MII)

summary:
RNA Evaluation mouse PND10 male left cortex microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR267SUE)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CARS. (CARS-BGKcLV26)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR693YZA)

summary:
human_brain_Rush ID_E5124249_BS200_ENC4_cDNA755

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR318WUN)

summary:
human_brain_Rush ID_E3616882_BS195_ENC4_cDNA750

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from heart (ENCSR303XYS)

summary:
RNA Evaluation mouse PND 18-20 months female heart microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR262ZBE)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against RIOK2. (RIOK2-BGKcLV30)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from HCT116 (ENCSR261OWE)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in CTCF_T.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR733QST)

summary:
Homo sapiens K562 treated with Panobinostat for 24 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR264IXQ)

summary:
Homo sapiens K562 treated with AR-42 for 4 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from K562 (ENCSR261KBX)

summary:
CoPRO experiment. A run-on assay was performed on captured nascent RNA with cap state selection. In this experiment, only capped nascent RNA was selected and PCR amplification was performed before sequencing.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from activated T-helper 17 cell (ENCSR265EHG)

summary:
h.CD4.Th17_DONOR 5: 72 Hour T cell activation (CD3.CD28 beads) + 50U/ml IL-2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR256UIA)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against DBNL. (DBNL-BGHcLV29)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR693CVD)

summary:
human_brain_Rush ID_E7763031_BS210_ENC4_cDNA765

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR689NPY)

summary:
Homo sapiens K562 treated with AR-42 for 24 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR251LKQ)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CSNK1E. (CSNK1E-BGKcLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR256YPC)

summary:
RNA Evaluation human Rush brain microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR252IPQ)

summary:
human_brain_Rush ID_E2395615_BS177_ENC4_cDNA731

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR697NDQ)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CMTR1. (CMTR1-BGKcLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR688ZJS)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CCT2. (CCT2-BGKcLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR726RTM)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against RTCB. (RTCB-BGHcLV31)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR250QFO)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against ARHGEF1. (ARHGEF1-BGHcLV27)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR675UIU)

summary:
human_brain_Rush ID_E7469794_BS126_ENC4_cDNA688

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from middle frontal area 46 (ENCSR258RLB)


title: total RNA-seq from middle frontal area 46 (ENCSR693KOP)

summary:
human_brain_Rush ID_2842953_BS95_ENC4_cDNA672

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from heart (ENCSR674QMU)

summary:
B6 X Cast heart_8-10 months female

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR248WTR)

summary:
Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHcLV29-B)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR693JOK)

summary:
Homo sapiens K562 treated with GSK J4 for 24 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from heart (ENCSR673ZSX)

summary:
RNA Evaluation mouse PND25 months male heart microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruChase-seq from Caco-2 (ENCSR245MXB)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from K562 (ENCSR307GHU)

summary:
RNA-seq on K562 cells treated with a CRISPR gRNA against CHCHD3. (CHCHD3-BGKcLV28)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from adrenal gland (ENCSR249EFE)

summary:
B6 X Cast adrenal gland_8-10 months male

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruChase-seq from mammary epithelial cell (ENCSR677JOI)


title: PRO-seq from HCT116 (ENCSR673THD)

summary:
PRO-seq in CTCF_T

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR251SXS)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against ACO2. (ACO2-BGHcLV25)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from K562 (ENCSR672NDZ)

summary:
Homo sapiens K562 treated with Chaetocin for 12 hours

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: BruChase-seq from Caco-2 (ENCSR672HUM)


title: PRO-seq from HCT116 (ENCSR242MOQ)

summary:
PRO-seq in BRD4_T

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: long read RNA-seq from left cerebral cortex (ENCSR674BKT)

summary:
5xFAD ctx 8 mo Male

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR244OOV)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against CMTR1. (CMTR1-BGHcLV29)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from activated naive CD4-positive, alpha-beta T cell (ENCSR241EBI)

summary:
h.CD4.Naive_DONOR 6: 72 Hour T cell activation (CD3.CD28 beads) + 50U/ml IL-2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR671FDZ)

summary:
Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHcLV24)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCSR235PLU)

summary:
h.CD4.Naive_DONOR 6: 0 hour no activation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: CRISPR RNA-seq from HepG2 (ENCSR235JSA)

summary:
RNA-seq on HepG2 cells treated with a CRISPR gRNA against RPUSD2. (RPUSD2-BGHcLV31)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from middle frontal area 46 (ENCSR671FBB)

summary:
human_brain_Rush ID_E1329219_BS173_ENC4_cDNA727

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from activated naive CD8-positive, alpha-beta T cell (ENCSR235AGT)

summary:
RNA Evaluation human naive CD8+ T cell (activated day 7) microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: microRNA-seq from layer of hippocampus (ENCSR234WVC)

summary:
RNA Evaluation 5xFAD/Cast mouse female hippocampus microRNA-seq from Mortazavi

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from A549 (ENCSR234WEZ)


title: total RNA-seq from middle frontal area 46 (ENCSR669GBC)

summary:
human_brain_Rush ID_E2541828_BS179_ENC4_cDNA733

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf