title: snRNA-seq from gastrocnemius (ENCSR928UPG)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P4 female normal 1k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from WTC11 (ENCSR548AQS)

status: Public on Mar 06 2026

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

summary:
Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test neuronal enhancers and promoters.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HepG2 (ENCSR509EUX)

summary:
Elements cloned into the pGL4 vector upstream of a minimal promoter. One of nine methods testing element activity in parallel.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from HepG2 (ENCSR547NTG)

summary:
Elements cloned into the HSS (STARR-seq) vector, with both elements and barcodes cloned into the 3' UTR. Tested in the same batch as HSS_b2, using primers around the full element and barcode to circumvent the possible detection of artifacts emerging from transcription initiation internal to the upstream element.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from HEK293T (ENCSR484ECL)

summary:
Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the MSMB promoter.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from HepG2 (ENCSR542KWX)

summary:
Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the SORT1 enhancer.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from NIH3T3 (ENCSR517PBF)

summary:
Elements cloned into the pGL4Z vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the ZRS enhancer.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HepG2 (ENCSR463IRX)

summary:
Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test K562/Hepg2 enhancers as a pilot library to a larger-scale experiment.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from K562 (ENCSR460LZI)


title: Control MPRA from MIN6 (ENCSR463MKA)

summary:
Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the ZFAND3 enhancer.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HEL (ENCSR436DRI)

summary:
Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the GP1BB promoter.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from HepG2 (ENCSR468WFP)

summary:
Elements cloned upstream of the reporter's minimal promoter, with barcode located in the 5' UTR of a reporter in a lentiviral vector, using a mutant integrase to prevent genomic integration. One of nine methods testing element activity in parallel.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR927BSJ)

type: Expression profiling by high throughput sequencing

summary:
Illumina short-read B6/Cast F1 gastrocnemius P18-20mo female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from K562 (ENCSR540PAH)

summary:
Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the PKLR promoter.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR921SBQ)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P10 female normal 1k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR926QCE)

summary:
Illumina short-read B6/Cast F1 hippocampus P36 male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from NIH3T3 (ENCSR426MVD)


title: MPRA from HepG2 (ENCSR405QCT)

summary:
Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test potential HepG2, K562, and WTC11 enhancers and promoters of all protein-coding genes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HepG2 (ENCSR478ESZ)

summary:
Elements cloned upstream of the reporter's minimal promoter, with barcode located in the 3' UTR of a reporter in a lentiviral vector, using a wild type integrase to allow genomic integration. One of nine methods testing element activity in parallel.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from HepG2 (ENCSR383FIW)

summary:
Elements cloned into the HSS (STARR-seq) vector, with both elements and barcodes cloned into the 3' UTR. Tested in an independent, second batch as HSS, and serves as an internal control to HSS_full.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from HeLa (ENCSR393YZU)

summary:
Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the FOXE1 promoter.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from NIH3T3 (ENCSR369JXL)


title: MPRA from Neuro-2a (ENCSR397JKG)

summary:
Elements cloned into the pGL3 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the RET enhancer.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HeLa (ENCSR373WOB)


title: snRNA-seq from adrenal gland (ENCSR918LWU)

summary:
Illumina short-read B6/Cast F1 adrenal P8mo female 8mo 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from K562 (ENCSR382BVV)

summary:
Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test K562 enhancers and promoters of all protein-coding genes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from MIN6 (ENCSR361QPQ)

summary:
Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the TCF7L2 enhancer.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from WTC11 (ENCSR356TMB)

summary:
Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test potential enhancers from HepG2, K562, and WTC11 cells, and promoters of protein-coding genes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from HepG2 (ENCSR366UIC)

summary:
Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the SORT1 enhancer.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR906KCJ)

summary:
Illumina short-read B6/Cast F1 heart P25 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR908PNN)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P2mo female normal 1k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HepG2 (ENCSR352YKN)

summary:
Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the F9 promoter.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from HepG2 (ENCSR360LZF)

summary:
Elements cloned into the pGL4 vector upstream of a minimal promoter. Test of the same set of elements in both the forward and reverse orientations in parallel.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from HepG2 (ENCSR356YBY)

summary:
Elements cloned into the pGL4 vector upstream of a minimal promoter. One of nine methods testing element activity in parallel.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from WTC11 (ENCSR336MKI)


title: Control MPRA from HepG2 (ENCSR331WRX)

summary:
Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test HepG2 enhancers and promoters of all protein-coding genes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from HepG2 (ENCSR293DMS)


title: Control MPRA from K562 (ENCSR327IIZ)

summary:
Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test K562/Hepg2 enhancers as a pilot library to a larger-scale experiment.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from HepG2 (ENCSR335DOI)

summary:
Elements cloned into the ORI (STARR-seq lacking a minimal promoter) vector, with both elements and barcodes cloned into the 3' UTR. Tested in the same batch as ORI_b2, using primers around the full element and barcode to circumvent the possible detection of artifacts emerging from transcription initiation internal to the upstream element.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HEL (ENCSR330ZFH)

summary:
Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the BCL11A enhancer.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HepG2 (ENCSR281FRP)

summary:
Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the SORT enhancer, using 3' to 5' direction.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR899EKD)

summary:
Illumina short-read B6/Cast F1 adrenal P18-20mo female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HaCaT (ENCSR270PHO)

summary:
Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the IRF6 enhancer.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HepG2 (ENCSR255GVC)

summary:
Elements and barcodes cloned into the 3' UTR of a reporter in a lentiviral vector, using a mutant integrase to prevent genomic integration. One of nine methods testing element activity in parallel.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from WTC11 (ENCSR244FWB)

summary:
Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test potential WTC11 enhancers and promoters of protein-coding genes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR888TQC)

summary:
Illumina short-read B6/Cast F1 hippocampus P10 female ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from HepG2 (ENCSR278KFS)

summary:
Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the LDLR promoter.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HepG2 (ENCSR208DGH)


title: MPRA from K562 (ENCSR203UFY)

summary:
Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test potential HepG2, K562, and WTC11 enhancers and promoters of all protein-coding genes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HepG2 (ENCSR259LFO)

summary:
Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the SORT1 enhancer.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from Neuro-2a (ENCSR186OUG)

summary:
Elements cloned into the pGL3 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the RET enhancer.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR883XZK)

summary:
Illumina short-read B6/Cast F1 cortex P18-20mo male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HepG2 (ENCSR202CHZ)

summary:
Elements cloned upstream of the reporter's minimal promoter, with barcode located in the 3' UTR of a reporter in a lentiviral vector, using a mutant integrase to prevent genomic integration. One of nine methods testing element activity in parallel.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from K562 (ENCSR166BQV)

summary:
Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the PKLR promoter.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from K562 (ENCSR186NQR)

summary:
Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test K562 enhancers and promoters of all protein-coding genes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from HepG2 (ENCSR118NBQ)

summary:
Elements cloned into the ORI (STARR-seq lacking a minimal promoter) vector, with both elements and barcodes cloned into the 3' UTR. One of nine methods testing element activity in parallel.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HEL (ENCSR200LXA)

summary:
Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the HBB promoter.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from HepG2 (ENCSR092XKS)


title: snRNA-seq from heart (ENCSR868XSG)

summary:
Illumina short-read B6/Cast F1 heart P10 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HepG2 (ENCSR058RIG)


title: MPRA from HepG2 (ENCSR069RCF)

summary:
Elements and barcodes cloned into the 3' UTR of a reporter in a lentiviral vector, using a wild type integrase to allow genomic integration. One of nine methods testing element activity in parallel.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR869HKZ)

summary:
Illumina short-read B6/Cast F1 hippocampus P36 female ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HepG2 (ENCSR215YXA)

summary:
Elements cloned into the pGL4 vector upstream of a minimal promoter. Test of a mix of short, medium, and long elements in parallel.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR859XOI)

summary:
Illumina short-read B6/Cast F1 hippocampus P14 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HepG2 (ENCSR049RIU)

summary:
Elements cloned into the HSS (STARR-seq) vector, with both elements and barcodes cloned into the 3' UTR. Tested in an independent, second batch as HSS, and serves as an internal control to HSS_full.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control MPRA from Neuro-2a (ENCSR020AUG)

summary:
Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the ultra conserved element UC88.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR860LQG)

summary:
Illumina short-read B6/Cast F1 heart P36 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HepG2 (ENCSR022GQD)

summary:
Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test HepG2 enhancers and promoters of all protein-coding genes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from NIH3T3 (ENCSR035ODX)

summary:
Elements cloned into the pGL4Z vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the ZRS enhancer.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from SK-MEL-28 (ENCSR006GAG)

summary:
Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the IRF4 enhancer.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HepG2 (ENCSR080JVM)

summary:
Elements cloned upstream of the reporter's minimal promoter, with barcode located in the 5' UTR of a reporter in a lentiviral vector, using a mutant integrase to prevent genomic integration. One of nine methods testing element activity in parallel.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR846QIZ)

summary:
Illumina short-read B6/Cast F1 hippocampus P10 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: MPRA from HepG2 (ENCSR002UCW)

summary:
Elements cloned into the HSS (STARR-seq) vector, with both elements and barcodes cloned into the 3' UTR. Tested in the same batch as HSS_b2, using primers around the full element and barcode to circumvent the possible detection of artifacts emerging from transcription initiation internal to the upstream element.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR839BHY)

summary:
Illumina short-read B6/Cast F1 cortex P2mo female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR824CFI)

summary:
Illumina short-read B6/Cast F1 hippocampus P2mo female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR827AOS)

summary:
Illumina short-read B6/Cast F1 cortex P10 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR816PAX)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P2mo female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR809WJL)

summary:
Illumina short-read B6/Cast F1 heart P2mo female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR823CLM)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P25 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR823HRL)

summary:
Illumina short-read 5xFAD/Cast F1 cortex P8mo male 8mo 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR819UHV)

summary:
Illumina short-read B6/Cast F1 hippocampus P8mo female 8mo 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR826EHD)

summary:
Illumina short-read B6/Cast F1 adrenal P36 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR800QGK)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P25 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR794RPU)

summary:
Illumina short-read B6/Cast F1 adrenal P36 male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR773CKJ)

summary:
Illumina short-read B6/Cast F1 adrenal P18-20mo male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR790DPF)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P4 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR855URG)

summary:
Illumina short-read B6/Cast F1 hippocampus P8mo male 8mo 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR767FKE)

summary:
Illumina short-read B6/Cast F1 hippocampus P36 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR793HMA)

summary:
Illumina short-read B6/Cast F1 cortex P2mo male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR764CYB)

summary:
Illumina short-read B6/Cast F1 heart P25 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR776XMP)

summary:
Illumina short-read B6/Cast F1 adrenal P14 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR763LIT)

summary:
Illumina short-read B6/Cast F1 adrenal P10 female ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR743OKJ)

summary:
Illumina short-read B6/Cast F1 heart P18-20mo female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR736JKX)

summary:
Illumina short-read B6/Cast F1 hippocampus P14 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR730JFZ)

summary:
Illumina short-read B6/Cast F1 hippocampus P25 female ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR732MDJ)

summary:
Illumina short-read B6/Cast F1 adrenal P4 female ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR728NFJ)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P14 male normal 1k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR729BRE)

summary:
Illumina short-read B6/Cast F1 heart P4 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR697WWY)

summary:
Illumina short-read 5xFAD/Cast F1 adrenal P8mo female 8mo 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR711CNO)

summary:
Illumina short-read B6/Cast F1 adrenal P14 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR696NAL)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P4 female normal 15k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR694GJL)

summary:
Illumina short-read 5xFAD/Cast F1 cortex P8mo female 8mo 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR725IGH)

summary:
Illumina short-read B6/Cast F1 hippocampus P8mo male 8mo 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR659DFF)

summary:
Illumina short-read B6/Cast F1 cortex P14 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR666LZG)

summary:
Illumina short-read 5xFAD/Cast F1 hippocampus P8mo female 8mo 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR650VIQ)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P14 female normal 1k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR692LZA)

summary:
Illumina short-read B6/Cast F1 hippocampus P2mo female ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR688APT)

summary:
Illumina short-read B6/Cast F1 heart P25 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR693KAV)

summary:
Illumina short-read B6/Cast F1 adrenal P2mo male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR711LRI)

summary:
Illumina short-read B6/Cast F1 adrenal P25 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR662TPD)

summary:
Illumina short-read B6/Cast F1 adrenal P10 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR653HPZ)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P10 male normal 15k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR646KEB)

summary:
Illumina short-read 5xFAD/Cast F1 heart P8mo male 8mo 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR632SJM)

summary:
Illumina short-read B6/Cast F1 cortex P4 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR644SME)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P4 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR627TLB)

summary:
Illumina short-read B6/Cast F1 adrenal P4 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR627XNK)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P25 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR617CNE)

summary:
Illumina short-read B6/Cast F1 heart P2mo male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR667UMR)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P10 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR613VKV)

summary:
Illumina short-read B6/Cast F1 hippocampus P36 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR627PLH)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P4 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR594LDC)

summary:
Illumina short-read B6/Cast F1 heart P36 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR642QUS)

summary:
Illumina short-read B6/Cast F1 hippocampus P14 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR650QSN)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P10 male normal 1k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR581NLU)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P14 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR581ZDJ)

summary:
Illumina short-read 5xFAD/Cast F1 hippocampus P8mo male 8mo 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR575TNG)

summary:
Illumina short-read B6/Cast F1 adrenal P36 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR573UKV)

summary:
Illumina short-read B6/Cast F1 heart P2mo male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR577OFZ)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P25 male normal 15k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR580UNE)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P36 male normal 15k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR559AAG)

summary:
Illumina short-read B6/Cast F1 heart P36 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR571QJI)

summary:
Illumina short-read 5xFAD/Cast F1 gastrocnemius P8mo male 8mo 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR551OZP)

summary:
Illumina short-read B6/Cast F1 adrenal P10 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR569LJC)

summary:
Illumina short-read B6/Cast F1 hippocampus P25 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR548JRH)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P36 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR554FGW)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P10 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR591UDP)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P8mo male 8mo 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR567YKE)

summary:
Illumina short-read 5xFAD/Cast F1 hippocampus P8mo male 8mo 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR545URU)

summary:
Illumina short-read B6/Cast F1 hippocampus P18-20mo male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR544MGC)

summary:
Illumina short-read B6/Cast F1 cortex P25 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR611QJH)

summary:
Illumina short-read B6/Cast F1 cortex P25 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR544IJY)

summary:
Illumina short-read B6/Cast F1 hippocampus P8mo female 8mo 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR531SRE)

summary:
Illumina short-read 5xFAD/Cast F1 cortex P8mo female 8mo 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR499ZYZ)

summary:
Illumina short-read B6/Cast F1 hippocampus P25 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR552XCF)

summary:
Illumina short-read B6/Cast F1 adrenal P10 male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR526LFP)

summary:
Illumina short-read B6/Cast F1 adrenal P18-20mo male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR484MVN)

summary:
Illumina short-read 5xFAD/Cast F1 cortex P8mo male 8mo 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR496OYJ)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P2mo male normal 1k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR490RCS)

summary:
Illumina short-read B6/Cast F1 cortex P4 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR488XVC)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P36 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR472OOH)

summary:
Illumina short-read B6/Cast F1 adrenal P4 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR480RWU)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P18-20mo male normal 15k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR527LIA)

summary:
Illumina short-read B6/Cast F1 cortex P10 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR462NDO)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P14 female normal 15k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR459ESG)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P36 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR455YDL)

summary:
Illumina short-read B6/Cast F1 heart P18-20mo male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR467JRI)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P8mo female 8mo 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR454ZHR)

summary:
Illumina short-read B6/Cast F1 adrenal P2mo female ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR452BKB)

summary:
Illumina short-read B6/Cast F1 adrenal P2mo male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR450IJU)

summary:
Illumina short-read B6/Cast F1 cortex P36 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR576UHY)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P2mo female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR425UJQ)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P18-20mo male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR440PMT)

summary:
Illumina short-read B6/Cast F1 heart P10 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR514XCG)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P25 male normal 1k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR422JWZ)

summary:
Illumina short-read B6/Cast F1 adrenal P4 male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR498SXJ)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P14 male normal 15k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR442EUE)

summary:
Illumina short-read B6/Cast F1 cortex P8mo female 8mo 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR442NQZ)

summary:
Illumina short-read B6/Cast F1 heart P10 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR435CMT)

summary:
Illumina short-read B6/Cast F1 hippocampus P2mo male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR399TQO)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P25 female normal 15k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR403MNL)

summary:
Illumina short-read B6/Cast F1 adrenal P14 male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR402GQZ)

summary:
Illumina short-read B6/Cast F1 adrenal P36 female ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR483SSM)

summary:
Illumina short-read B6/Cast F1 hippocampus P14 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR399EUZ)

summary:
Illumina short-read B6/Cast F1 hippocampus P25 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR409OGG)

summary:
Illumina short-read B6/Cast F1 adrenal P8mo male 8mo 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR396XOO)

summary:
Illumina short-read B6/Cast F1 adrenal P25 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR419OCT)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P4 male normal 1k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR358SBF)

summary:
Illumina short-read B6/Cast F1 adrenal P14 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR355CTS)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P14 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR329JYG)

summary:
Illumina short-read B6/Cast F1 hippocampus P2mo male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR337DKH)

summary:
Illumina short-read B6/Cast F1 heart P36 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR358NKP)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P25 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR386PPF)

summary:
Illumina short-read B6/Cast F1 cortex P10 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR320EFC)

summary:
Illumina short-read B6/Cast F1 hippocampus P2mo male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR312AOC)

summary:
Illumina short-read B6/Cast F1 adrenal P4 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR308DHB)

summary:
Illumina short-read B6/Cast F1 cortex P18-20mo female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR305SPL)

summary:
Illumina short-read B6/Cast F1 heart P18-20mo female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR279GBC)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P18-20mo female normal 15k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR303EIR)

summary:
Illumina short-read B6/Cast F1 heart P2mo female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR257BOU)

summary:
Illumina short-read B6/Cast F1 cortex P10 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR277UKO)

summary:
Illumina short-read B6/Cast F1 heart P14 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR257VQO)

summary:
Illumina short-read B6/Cast F1 hippocampus P10 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR291RIX)

summary:
Illumina short-read B6/Cast F1 adrenal P25 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR328JOY)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P4 male normal 15k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR250SCW)

summary:
Illumina short-read B6/Cast F1 cortex P2mo male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR248MFG)

summary:
Illumina short-read B6/Cast F1 cortex P25 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR263VNQ)

summary:
Illumina short-read B6/Cast F1 adrenal P25 male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR253YLA)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P10 female normal 15k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR237OCP)

summary:
Illumina short-read B6/Cast F1 heart P25 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR247PQY)

summary:
Illumina short-read B6/Cast F1 heart P4 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR247QPJ)

summary:
Illumina short-read B6/Cast F1 hippocampus P14 male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR232VMC)

summary:
Illumina short-read B6/Cast F1 hippocampus P18-20mo male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR216UTT)

summary:
Illumina short-read B6/Cast F1 adrenal P2mo male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR266RTS)

summary:
Illumina short-read B6/Cast F1 heart P4 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR305VTL)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P36 male normal 1k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR231VJO)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P36 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR203XJO)

summary:
Illumina short-read B6/Cast F1 hippocampus P2mo female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR302VFA)

summary:
Illumina short-read B6/Cast F1 cortex P36 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR201SNQ)

summary:
Illumina short-read B6/Cast F1 adrenal P18-20mo female ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR196TWX)

summary:
Illumina short-read B6/Cast F1 adrenal P36 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR254SLA)

summary:
Illumina short-read B6/Cast F1 cortex P36 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR187HKH)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P18-20mo male normal 1k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR167HUO)

summary:
Illumina short-read B6/Cast F1 hippocampus P25 male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR165VMQ)

summary:
Illumina short-read B6/Cast F1 adrenal P25 female ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR220GBV)

summary:
Illumina short-read B6/Cast F1 cortex P4 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR161BNJ)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P25 female normal 1k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR160FFZ)

summary:
Illumina short-read B6/Cast F1 cortex P8mo male 8mo 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR182SMX)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P10 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR165FLF)

summary:
Illumina short-read B6/Cast F1 adrenal P4 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR160AKB)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P14 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR160VMU)

summary:
Illumina short-read B6/Cast F1 cortex P8mo male 8mo 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR178PKG)

summary:
Illumina short-read B6/Cast F1 cortex P2mo female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR150KKS)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P2mo male normal 15k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR147TEP)

summary:
Illumina short-read B6/Cast F1 heart P18-20mo male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR137UJM)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P2mo female normal 15k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR148VQR)

summary:
Illumina short-read B6/Cast F1 adrenal P25 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR141EJG)

summary:
Illumina short-read 5xFAD/Cast F1 heart P8mo female 8mo 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR138QIF)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P10 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR122DEZ)

summary:
Illumina short-read B6/Cast F1 heart P4 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR134FSZ)

summary:
Illumina short-read B6/Cast F1 cortex P18-20mo male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR127LUZ)

summary:
Illumina short-read B6/Cast F1 hippocampus P10 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR094YHS)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P14 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR174ZVM)

summary:
Illumina short-read B6/Cast F1 heart P8mo male 8mo 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR125HRM)

summary:
Illumina short-read B6/Cast F1 heart P14 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR136FOI)

summary:
Illumina short-read 5xFAD/Cast F1 gastrocnemius P8mo female 8mo 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR093CLX)

summary:
Illumina short-read B6/Cast F1 adrenal P14 female ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR097PDV)

summary:
Illumina short-read B6/Cast F1 adrenal P2mo female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR145HUM)

summary:
Illumina short-read B6/Cast F1 heart P8mo female 8mo 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR118FCJ)

summary:
Illumina short-read B6/Cast F1 cortex P14 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR108ZIJ)

summary:
Illumina short-read B6/Cast F1 adrenal P36 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR083EPD)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P18-20mo female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR132KMR)

summary:
Illumina short-read B6/Cast F1 cortex P36 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR092RYV)

summary:
Illumina short-read B6/Cast F1 cortex P18-20mo female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR081SXM)

summary:
Illumina short-read B6/Cast F1 cortex P14 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR111SCI)

summary:
Illumina short-read B6/Cast F1 adrenal P10 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR084RQP)

summary:
Illumina short-read B6/Cast F1 cortex P14 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR079GGS)

summary:
Illumina short-read B6/Cast F1 hippocampus P10 female normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from layer of hippocampus (ENCSR079CKL)

summary:
Illumina short-read B6/Cast F1 hippocampus P18-20mo male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from heart (ENCSR041KFB)

summary:
Illumina short-read B6/Cast F1 heart P14 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from left cerebral cortex (ENCSR037LFG)

summary:
Illumina short-read B6/Cast F1 cortex P4 male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR035ZCY)

summary:
Illumina short-read B6/Cast F1 adrenal P18-20mo female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR026VDA)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P2mo male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from activated B cell (ENCSR992GTE)

type: Genome binding/occupancy profiling by high throughput sequencing

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from K562 (ENCSR970WFK)


title: snRNA-seq from gastrocnemius (ENCSR019BZL)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P18-20mo male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from NCI-H526 (ENCSR945CAC)


title: DNase-seq from NCI-H69 (ENCSR925BVJ)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR915DCW)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR853IHW)


title: DNase-seq from K562 (ENCSR840YOF)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR792ZWJ)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR834HNG)


title: DNase-seq from immature natural killer cell (ENCSR978XCX)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR840FLY)


title: snRNA-seq from left cerebral cortex (ENCSR036OQE)

summary:
Illumina short-read B6/Cast F1 cortex P8mo female 8mo 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from NCI-H82 (ENCSR725CSF)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR762ZVI)


title: DNase-seq from mucosa of descending colon (ENCSR737MGZ)


title: DNase-seq from NCI-H1694 (ENCSR965SOG)


title: long read RNA-seq from dorsolateral prefrontal cortex (ENCSR697CSS)

summary:
Rush brain E2728434

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from gastrocnemius (ENCSR047KXM)

summary:
Illumina short-read B6/Cast F1 gastrocnemius P2mo male normal 12k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: snRNA-seq from adrenal gland (ENCSR049KDI)

summary:
Illumina short-read B6/Cast F1 adrenal P10 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: long read RNA-seq from dorsolateral prefrontal cortex (ENCSR543NWW)

summary:
Rush brain E2842953

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR582SEN)


title: DNase-seq from NCI-H2107 (ENCSR802JQY)


title: DNase-seq from SW 1271 (ENCSR553PHO)


title: DNase-seq from activated T-cell (ENCSR523VDT)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR552PGF)


title: DNase-seq from inflammatory macrophage (ENCSR773SWT)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR573JCI)


title: DNase-seq from GM12878 (ENCSR507IEF)


title: long read RNA-seq from dorsolateral prefrontal cortex (ENCSR872GND)

summary:
Rush brain E6264119

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR497BYS)


title: DNase-seq from activated B cell (ENCSR441WRS)


title: DNase-seq from NCI-H748 (ENCSR409ZBU)


title: DNase-seq from NCI-H2081 (ENCSR376MYJ)


title: long read RNA-seq from dorsolateral prefrontal cortex (ENCSR111GJE)

summary:
Rush brain E9867116

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: long read RNA-seq from C2C12 (ENCSR160HKZ)

summary:
myoblast C2C12 direct rna

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR383EMG)


title: DNase-seq from suppressor macrophage (ENCSR361JSG)


title: DNase-seq from NCI-H1417 (ENCSR605EUP)


title: DNase-seq from activated B cell (ENCSR418YUJ)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR361EAQ)


title: DNase-seq from inflammatory macrophage (ENCSR358FCI)


title: DNase-seq from activated T-cell (ENCSR349UGM)


title: DNase-seq from K562 (ENCSR335RHJ)


title: Polyamines buffer labile iron to suppress ferroptosis

city: Cambridge

first: Pushkal

last: Sharma

address: 455 Main Street

institute: Whitehead Institute

summary: Polyamines are essential and evolutionarily conserved metabolites present at millimolar concentrations in mammalian cells. Cells tightly regulate polyamine homeostasis through complex feedback mechanisms, yet the precise role necessitating this regulation remains unclear. Here, we show that polyamines function as endogenous buffers of redox-active iron, providing a molecular link between polyamine metabolism and ferroptosis. Using genome-wide CRISPR screens, we identified a synthetic lethal dependency between polyamine depletion and the key ferroptosis suppressor, GPX4. Mechanistically, we show that polyamine deficiency triggers a redistribution of cellular iron, increasing the labile iron pool and upregulating ferritin. To directly visualize this iron buffering in living cells, we developed a genetically encoded fluorescent reporter for redox-active iron. Live-cell analysis revealed a striking inverse correlation between intracellular polyamine levels and redox-active iron at single-cell resolution. These findings reposition polyamines as key regulators of iron homeostasis, with implications for ferroptosis-linked disease states and cellular redox balance.

overall_design: Cells were treated with 5 uM sardomozide or 1 mM DFMO for 72h. Control was DMSO.

first: Ankur

last: Jain


title: DNase-seq from activated B cell (ENCSR321YPI)


title: DNase-seq from immature natural killer cell (ENCSR309XUP)


title: DNase-seq from GF-D8 (ENCSR342FHH)


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR298SHM)


title: long read RNA-seq from technical sample (ENCSR731MFY)

summary:
LRGASP H1 mix

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from activated T-cell (ENCSR248LYM)


title: DNase-seq from NCI-H510A (ENCSR295UEC)


title: DNase-seq from NCI-H446 (ENCSR292BRC)


title: DNase-seq from NCI-H774 (ENCSR539QGM)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR208RXB)


title: DNase-seq from T-helper 1 cell (ENCSR370YEN)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR188VGU)


title: DNase-seq from NCI-H2171 (ENCSR176FAH)


title: DNase-seq from NCI-H1092 (ENCSR297WFP)


title: DNase-seq from activated B cell (ENCSR161LOZ)


title: DNase-seq from NCI-H345 (ENCSR163MZZ)


title: DNase-seq from activated T-cell (ENCSR130DGG)


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR182ZRL)


title: DNase-seq from T-cell (ENCSR130QML)


title: DNase-seq from suppressor macrophage (ENCSR166BXN)


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR101OTC)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR145ORS)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR033HUY)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR121AEC)


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR105LXZ)


title: DNase-seq from inflammatory macrophage (ENCSR227ODJ)


title: DNase-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCSR905BAW)


title: DNase-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCSR905NAN)


title: DNase-seq from immature natural killer cell (ENCSR863HYZ)


title: DNase-seq from inflammatory macrophage (ENCSR168WGF)


title: DNase-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCSR641HZO)


title: total RNA-seq from dorsolateral prefrontal cortex (ENCSR944UJZ)

summary:
human_brain_Rush ID_E6090948_BS101_ENC4_cDNA678

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCSR530ZCQ)


title: DNase-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCSR719DJX)


title: DNase-seq from layer of hippocampus (ENCSR460GLK)


title: DNase-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCSR793FAY)


title: DNase-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCSR610YUT)


title: DNase-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCSR436ASB)


title: DNase-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCSR453ZWK)


title: DNase-seq from CD4-positive, alpha-beta memory T cell (ENCSR509BPF)


title: DNase-seq from layer of hippocampus (ENCSR443DYB)


title: DNase-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCSR353SYG)


title: DNase-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCSR308XZY)


title: DNase-seq from immature natural killer cell (ENCSR446BSR)


title: DNase-seq from kidney (ENCSR142NDV)


title: Chromatin changes after long term vitamin D supplementation

city: Olsztyn

first: Maciej

last: Rybiński

state: Warmian-Masurian Voivodeship

address: Trylińskiego 18

country: Poland

institute: Institute of Animal Reproduction and Food Research of the Polish Academy of Sciences.

summary: In this study, we investigate the long-term in vivo modulation of the human epigenome following vitamin D₃ supplementation. Specifically, we analyse epigenetic changes in peripheral blood mononuclear cells (PBMCs) collected 84 days after administration of a single bolus dose of vitamin D₃ (1,000 IU/kg). Vitamin D is a well-known regulator of gene expression through the vitamin D receptor (VDR), which interacts with chromatin and modulates the epigenetic landscape of immune cells. However, the persistence and extent of these epigenomic effects in vivo remain insufficiently characterized.To address this question, we assess genome-wide epigenetic alterations in PBMCs to determine whether a single high dose of vitamin D₃ induces sustained modifications in regulatory regions associated with immune function and cellular signalling pathways. The study focuses on identifying changes in chromatin accessibility and regulatory element activity that may reflect long-lasting transcriptional priming of immune cells. This work represents a continuation of the VitDPAS study, which previously examined the immediate molecular responses to vitamin D₃ supplementation. By extending the analysis to the 84-day time point, the present study aims to determine whether the epigenetic effects of vitamin D₃ persist over the long term and contribute to prolonged immune modulation. Understanding these sustained epigenomic changes may provide new insights into the mechanisms through which vitamin D influences immune regulation and long-term health outcomes.

overall_design: PBMCs of 45 healthy individuals were collected before and after an in-vivo intake of a single bolus of 1,000 IU/kg of vitamin D3. The same bolus was repeated every 28 days again three times. This implies, a bolus was administered on day 0, day 28 and day 56. On day 84, the data was collected as a direct comparison for the already published day 0 data. The first set of data is already previously published.

first: Carsten

last: Carlberg

last: Rbyinski