title: PRO-cap from astrocyte (ENCSR516KII)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PGP-1 derived astrocytes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from OCI-AML2 (ENCSR515BQK)

status: Public on Feb 28 2026

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

type: Genome binding/occupancy profiling by high throughput sequencing

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR287XTD)


title: DNase-seq from HUDEP-2 (ENCSR287CXQ)


title: PRO-cap from adrenal gland (ENCSR516YGD)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Adrenal gland.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from HUDEP-2 (ENCSR515BIS)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR287XKF)


title: ATAC-seq from T-cell (ENCSR285REQ)


title: Control CRISPR screen from glutamatergic neuron (ENCSR284PQK)


title: total RNA-seq from T-cell (ENCSR283CSY)

type: Expression profiling by high throughput sequencing


title: DNase-seq from CD14-positive monocyte (ENCSR288RCG)


title: DNase-seq from erythroblast (ENCSR514POY)


title: DNase-seq from immature natural killer cell (ENCSR283JAS)


title: DNase-seq from activated T-cell (ENCSR284RSH)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR514OPX)


title: DNase-seq from CD14-positive monocyte (ENCSR514NZF)


title: PRO-cap from neutrophil (ENCSR282IJP)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Neutrophils.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR513WSO)


title: STARR-seq from K562 (ENCSR514FNW)

summary:
Human gDNA fragments were selected based on DHS data, GRO-cap data, and/or histone marks in K562 cells and tested for their enhancer activity with eSTARR-seq. The RNAs derived from the transfected plasmids were sequenced and reported here.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control CRISPR screen from NCI-H460 (ENCSR513PAU)

summary:
Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR513LOX)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR511ZQB)


title: proliferation CRISPR screen from PC-3 (ENCSR282ELB)


title: Flow-FISH CRISPR screen from K562 (ENCSR510SCL)


title: PRO-cap from gallbladder (ENCSR282COG)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Gallbladder.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR282DYY)


title: DNase-seq from activated effector memory CD4-positive, alpha-beta T cell (ENCSR510LEO)


title: DNase-seq from inflammatory macrophage (ENCSR280URP)


title: DNase-seq from HCT116 (ENCSR510GDB)


title: DNase-seq from T-helper 2 cell (ENCSR510QAB)


title: STARR-seq from A549 (ENCSR282GET)


title: DNase-seq from NCI-H1092 (ENCSR280QKZ)


title: PRO-cap from vagina (ENCSR280NVT)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Vagina.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR279NGE)


title: Flow-FISH CRISPR screen from K562 (ENCSR280AOO)

summary:
GATA1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from activated T-cell (ENCSR279VCL)


title: DNase-seq from NCI-H146 (ENCSR509GUF)


title: DNase-seq from T-helper 9 cell (ENCSR278WQA)


title: DNase-seq from NCI-H2196 (ENCSR278EKI)


title: proliferation CRISPR screen from K562 (ENCSR509FZL)

summary:
Functional characterization experiment for CRISPRi/dCas9-KRAB-MGA1-MGA2 sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from suppressor macrophage (ENCSR508WDL)


title: DNase-seq from HUDEP-2 (ENCSR278FGQ)


title: Flow-FISH CRISPR screen from K562 (ENCSR507XPD)


title: Flow-FISH CRISPR screen from K562 (ENCSR506YOF)


title: DNase-seq from naive B cell (ENCSR505SCQ)


title: Flow-FISH CRISPR screen from K562 (ENCSR506FTU)


title: DNase-seq from immature natural killer cell (ENCSR276SCO)


title: DNase-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCSR505APK)


title: Flow-FISH CRISPR screen from K562 (ENCSR502XKS)


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR276MBW)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR501QAE)


title: DNase-seq from liver (ENCSR274WTH)


title: Flow-FISH CRISPR screen from GM12878 (ENCSR505BCW)


title: proliferation CRISPR screen from K562 (ENCSR501RAG)

summary:
Functional characterization experiment for tiling, dCas9-VPR/CRISPRa proliferation screens at CTCF motifs in loop anchors

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from cerebellar cortex (ENCSR274RXF)


title: Control CRISPR screen from K562 (ENCSR501FEU)

summary:
CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in K562 leukemia cells

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD14-positive monocyte (ENCSR500ZQD)


title: DNase-seq from activated effector memory CD4-positive, alpha-beta T cell (ENCSR274HUK)


title: Flow-FISH CRISPR screen from K562 (ENCSR274JMZ)


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR500LKJ)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR508PBU)


title: FACS CRISPR screen from F123 (ENCSR500VLM)


title: Flow-FISH CRISPR screen from K562 (ENCSR274EPF)


title: Flow-FISH CRISPR screen from K562 (ENCSR509XUH)


title: DNase-seq from K562 (ENCSR500NAJ)


title: Flow-FISH CRISPR screen from K562 (ENCSR273AQT)


title: DNase-seq from T follicular helper cell (ENCSR271HYO)


title: DNase-seq from B cell (ENCSR500IJD)


title: DNase-seq from brain (ENCSR269ODA)


title: PRO-cap from left cardiac atrium (ENCSR270EGA)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left atrium of heart.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR269OIJ)


title: DNase-seq from NOMO-1 (ENCSR499OMA)


title: PRO-cap from liver (ENCSR269FMG)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Liver.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from suppressor macrophage (ENCSR271PQC)


title: total RNA-seq from T-helper 2 cell (ENCSR498SYM)


title: Flow-FISH CRISPR screen from K562 (ENCSR497WYB)


title: DNase-seq from NCI-H526 (ENCSR268WIC)


title: DNase-seq from esophagus squamous epithelium (ENCSR499JWR)


title: PRO-cap from breast (ENCSR500IHG)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Breast mammary.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: long read scRNA-seq from adrenal gland (ENCSR497PUD)

summary:
PacBio long-read B6/Cast F1 adrenal P2mo male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR497BIB)

summary:
CD164

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from bronchial lymph node (ENCSR266TET)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Peribronchial lymph node.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR498DPH)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR496NUW)


title: DNase-seq from activated B cell (ENCSR266PJC)


title: ATAC-seq from T-helper 1 cell (ENCSR497DZG)


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR266MPT)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR266MTD)


title: DNase-seq from HUDEP-2 (ENCSR492ATF)


title: DNase-seq from suppressor macrophage (ENCSR491ORH)


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCSR266IUC)


title: DNase-seq from K562 (ENCSR263BDS)


title: total RNA-seq from T-helper 17 cell (ENCSR496AHR)


title: long read scRNA-seq from layer of hippocampus (ENCSR492SHL)

summary:
ONT long-read B6/Cast F1 hippocampus P36 male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: long read scRNA-seq from layer of hippocampus (ENCSR265JEM)

summary:
ONT long-read B6/Cast F1 hippocampus P36 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR491ABR)

summary:
FADS3

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from T-cell (ENCSR262WQN)


title: DNase-seq from CD14-positive monocyte (ENCSR491DPW)


title: DNase-seq from NK-92 (ENCSR490KLB)


title: DNase-seq from bone marrow (ENCSR494NUO)


title: PRO-cap from type B pancreatic cell (ENCSR262PWK)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in H9 derived insulin producing beta-like cells.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR265XMO)


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR267DTS)


title: PRO-cap from T-cell (ENCSR489FZB)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pan T cells.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from pancreas (ENCSR489BCG)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pancreas.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from HUDEP-2 (ENCSR264YFF)


title: DNase-seq from MCF-7 (ENCSR488KHZ)


title: DNase-seq from effector memory CD4-positive, alpha-beta T cell (ENCSR262CJS)


title: Flow-FISH CRISPR screen from K562 (ENCSR261MNB)


title: Flow-FISH CRISPR screen from K562 (ENCSR489UHA)


title: DNase-seq from suppressor macrophage (ENCSR489GKS)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR261HXP)


title: STARR-seq from A549 (ENCSR262PQN)


title: DNase-seq from activated gamma-delta T cell (ENCSR260SDO)


title: long read scRNA-seq from adrenal gland (ENCSR260YIQ)

summary:
ONT long-read B6/Cast F1 adrenal P25 male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR260DBV)


title: STARR-seq from A549 (ENCSR261RMM)


title: proliferation CRISPR screen from SW620 (ENCSR259XOO)

summary:
Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from HUDEP-2 (ENCSR259QXF)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR259YKO)


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR485OYS)


title: DNase-seq from NCI-H524 (ENCSR487MIC)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR258TNJ)


title: Flow-FISH CRISPR screen from THP-1 (ENCSR485MBR)


title: Flow-FISH CRISPR screen from K562 (ENCSR486EHB)


title: DNase-seq from HUDEP-2 (ENCSR259LQP)


title: STARR-seq from glutamatergic neuron (ENCSR258QGF)


title: DNase-seq from activated B cell (ENCSR484IKU)


title: DNase-seq from effector CD4-positive, alpha-beta T cell (ENCSR256URJ)


title: long read scRNA-seq from layer of hippocampus (ENCSR483UXN)

summary:
PacBio long-read B6/Cast F1 hippocampus P10 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from cardiac septum (ENCSR484CAZ)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Septum of heart.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from activated T-cell (ENCSR257DFF)


title: proliferation CRISPR screen from HCT116 (ENCSR255SPT)


title: DNase-seq from HUDEP-2 (ENCSR482NEV)


title: proliferation CRISPR screen from WTC11 (ENCSR482PHH)

summary:
Cell survival-based CRISPR screen targeting genomic regions near MSH2, MSH6, MLH1, PMS2, PCNA and HPRT1 genes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from HUDEP-2 (ENCSR480UPS)


title: PRO-cap from ovary (ENCSR482XCK)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ovary.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from jejunum (ENCSR255VLW)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Jejunum.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from progenitor cell of endocrine pancreas (ENCSR255MUU)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in H9 derived pancreatic progenitor cells.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from HUDEP-2 (ENCSR255QKV)


title: DNase-seq from immature natural killer cell (ENCSR480NHU)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR483FNY)


title: DNase-seq from suppressor macrophage (ENCSR485ZRK)


title: PRO-cap from upper lobe of left lung (ENCSR478DAN)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Upper lobe of left lung.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from BJAB (ENCSR480KTI)


title: DNase-seq from inflammatory macrophage (ENCSR255JWJ)


title: DNase-seq from right cardiac atrium (ENCSR256KBZ)


title: DNase-seq from Kasumi-1 (ENCSR255BHB)


title: DNase-seq from T47D (ENCSR478BMM)


title: DNase-seq from T47D (ENCSR477WEE)


title: DNase-seq from T-helper 2 cell (ENCSR254SIB)


title: proliferation CRISPR screen from WTC11 (ENCSR254SJU)


title: Flow-FISH CRISPR screen from K562 (ENCSR476KHP)


title: DNase-seq from CD14-positive monocyte (ENCSR476KXY)


title: DNase-seq from MCF-7 (ENCSR476UXZ)


title: DNase-seq from inflammatory macrophage (ENCSR254QMG)


title: DNase-seq from immature natural killer cell (ENCSR477GGR)


title: Flow-FISH CRISPR screen from THP-1 (ENCSR473PCZ)


title: long read scRNA-seq from layer of hippocampus (ENCSR253UOM)

summary:
ONT long-read B6/Cast F1 hippocampus P2mo female ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: FACS CRISPR screen from F123 (ENCSR473QRW)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR473ERS)


title: DNase-seq from activated T-cell (ENCSR472LSL)


title: DNase-seq from K562 (ENCSR253QZV)


title: PRO-cap from fallopian tube (ENCSR472ETC)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Fallopian tube.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR252HYG)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR252QDU)


title: long read scRNA-seq from layer of hippocampus (ENCSR472AKY)

summary:
ONT long-read B6/Cast F1 hippocampus P25 male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR473SLB)

summary:
CAPRIN1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR472QAJ)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR252WDE)


title: long read scRNA-seq from adrenal gland (ENCSR252DYO)

summary:
ONT long-read B6/Cast F1 adrenal P36 female ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from spleen (ENCSR251IRC)


title: DNase-seq from HUDEP-2 (ENCSR471LGH)


title: Control CRISPR screen from WTC11 (ENCSR250ZWC)


title: DNase-seq from NCI-H82 (ENCSR471BIZ)


title: DNase-seq from T47D (ENCSR250PTL)


title: PRO-cap from peripheral blood mononuclear cell (ENCSR250REI)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: FACS CRISPR screen from WTC11 (ENCSR250ZBY)


title: DNase-seq from MCF-7 (ENCSR249AOU)


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCSR471QHJ)


title: total RNA-seq from T-helper 17 cell (ENCSR467PMU)


title: Flow-FISH CRISPR screen from K562 (ENCSR465RNZ)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR466VMM)


title: DNase-seq from activated CD8-positive, alpha-beta T cell (ENCSR467EZY)


title: DNase-seq from NCI-H446 (ENCSR247UDP)


title: long read scRNA-seq from layer of hippocampus (ENCSR465BRP)

summary:
ONT long-read B6/Cast F1 hippocampus P10 female ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from osteocyte (ENCSR248SVP)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in H9 derived osteocytes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR469JAF)


title: DNase-seq from K562 (ENCSR464HIM)


title: DNase-seq from K562 (ENCSR461PLT)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR469VWD)


title: PRO-cap from esophagus muscularis mucosa (ENCSR246YHR)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Esophagus muscularis mucosa.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from Jurkat (ENCSR246ZMP)


title: Control CRISPR screen from glutamatergic neuron (ENCSR466IBU)


title: Flow-FISH CRISPR screen from Jurkat (ENCSR245TFD)


title: Flow-FISH CRISPR screen from THP-1 (ENCSR463WYO)


title: PRO-cap from psoas muscle (ENCSR245HPE)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Psoas muscle.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from Karpas-422 (ENCSR245UIS)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in KARPAS-422.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: STARR-seq from A549 (ENCSR459NUS)


title: DNase-seq from spleen (ENCSR247OMJ)


title: Flow-FISH CRISPR screen from K562 (ENCSR244LQC)


title: DNase-seq from MCF-7 (ENCSR245HBD)


title: DNase-seq from MCF-7 (ENCSR243RKQ)


title: DNase-seq from HUDEP-2 (ENCSR456BOZ)


title: DNase-seq from NCI-H1105 (ENCSR244BJV)


title: DNase-seq from T47D (ENCSR458MAQ)


title: long read scRNA-seq from layer of hippocampus (ENCSR245GNB)

summary:
ONT long-read B6/Cast F1 hippocampus P25 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from suppressor macrophage (ENCSR458QPA)


title: perturbation followed by scRNA-seq from K562 (ENCSR464SPV)


title: DNase-seq from OCI-AML2 (ENCSR457MWX)


title: DNase-seq from suppressor macrophage (ENCSR240YST)


title: Flow-FISH CRISPR screen from K562 (ENCSR455XYP)


title: PRO-cap from liver (ENCSR243MVI)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Liver.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from NCI-H187 (ENCSR459LSB)


title: proliferation CRISPR screen from K562 (ENCSR453GEJ)

summary:
Functional characterization experiment for tiling, dCas9-VPR/CRISPRa proliferation screens at CTCF motifs in loop anchors

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR455ERT)


title: DNase-seq from K562 (ENCSR451YGS)


title: Flow-FISH CRISPR screen from K562 (ENCSR239YFD)


title: DNase-seq from CD14-positive monocyte (ENCSR451UAB)


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCSR239DGJ)


title: total RNA-seq from T-helper 2 cell (ENCSR243YLR)


title: DNase-seq from NCI-H446 (ENCSR238XDW)


title: long read scRNA-seq from layer of hippocampus (ENCSR240WAO)

summary:
ONT long-read B6/Cast F1 hippocampus P36 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from MCF-7 (ENCSR451GBR)


title: DNase-seq from suppressor macrophage (ENCSR451VKL)


title: DNase-seq from activated B cell (ENCSR450TJS)


title: long read scRNA-seq from adrenal gland (ENCSR239HYJ)

summary:
PacBio long-read B6/Cast F1 adrenal P4 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from MCF-7 (ENCSR238UGH)


title: DNase-seq from DMS114 (ENCSR241OSL)


title: DNase-seq from HUDEP-2 (ENCSR238WNT)


title: DNase-seq from NOMO-1 (ENCSR450TDT)


title: Flow-FISH CRISPR screen from K562 (ENCSR450RRS)


title: DNase-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCSR450JEN)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR238EXW)


title: DNase-seq from inflammatory macrophage (ENCSR452KBX)


title: Flow-FISH CRISPR screen from K562 (ENCSR238DCF)


title: long read scRNA-seq from layer of hippocampus (ENCSR449BGI)

summary:
ONT long-read B6/Cast F1 hippocampus P2mo female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from HUDEP-2 (ENCSR448SID)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from HUDEP-2 (ENCSR236VJW)


title: DNase-seq from hippocampal formation (ENCSR447LUI)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR236SNH)


title: Flow-FISH CRISPR screen from K562 (ENCSR235OSX)


title: proliferation CRISPR screen from K562 (ENCSR237VMX)

summary:
Functional characterization experiment for CRISPRi/dCas9-KRAB-WSR7EEE sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from gastrocnemius medialis (ENCSR235BZZ)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Gastrocnemius medialis.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR235EVH)


title: DNase-seq from brain (ENCSR447BIL)


title: long read scRNA-seq from layer of hippocampus (ENCSR232UUS)

summary:
PacBio long-read B6/Cast F1 hippocampus P25 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from MOLM-13 (ENCSR446NCL)


title: STARR-seq from pancreas (ENCSR230PPM)


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR230TXS)


title: DNase-seq from effector CD4-positive, alpha-beta T cell (ENCSR230EOI)


title: DNase-seq from activated T-helper 17 cell (ENCSR230BGL)


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR233JAE)


title: DNase-seq from T778 (ENCSR446MFK)


title: DNase-seq from NCI-H128 (ENCSR444ZYN)


title: Flow-FISH CRISPR screen from K562 (ENCSR232IYM)


title: Flow-FISH CRISPR screen from Jurkat (ENCSR445FVK)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR446WYO)


title: DNase-seq from CD14-positive monocyte (ENCSR229QWH)


title: PRO-cap from skeletal muscle tissue (ENCSR229XTQ)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Skeletal muscle of leg.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from HUDEP-2 (ENCSR236AUI)


title: DNase-seq from suppressor macrophage (ENCSR229PWD)


title: Flow-FISH CRISPR screen from K562 (ENCSR443VTK)


title: DNase-seq from inflammatory macrophage (ENCSR229PJJ)


title: PRO-cap from bronchus (ENCSR233GRN)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Bronchus.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR229ZBT)


title: Flow-FISH CRISPR screen from K562 (ENCSR443ECL)


title: DNase-seq from liver (ENCSR441WQP)


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR229MWU)


title: Flow-FISH CRISPR screen from K562 (ENCSR441RPP)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR441AZV)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR443MTJ)


title: total RNA-seq from T-helper 1 cell (ENCSR439QXU)


title: DNase-seq from COR-L47 (ENCSR439QPR)


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR437XJH)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR442NTT)


title: Flow-FISH CRISPR screen from K562 (ENCSR439ORQ)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR437GGZ)


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCSR436JXW)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from K562 (ENCSR227NUB)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR228KFJ)


title: DNase-seq from UCSD-AML1 (ENCSR437MOQ)


title: PRO-cap from endodermal cell (ENCSR443GRP)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in H9 derived endodermal cells.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from NCI-H2029 (ENCSR228WZM)


title: DNase-seq from T-cell (ENCSR227AUC)


title: Flow-FISH CRISPR screen from K562 (ENCSR435XPQ)


title: DNase-seq from T47D (ENCSR435ICG)


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR226WID)


title: Flow-FISH CRISPR screen from K562 (ENCSR434HRF)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR434MLE)


title: Flow-FISH CRISPR screen from K562 (ENCSR226XFX)


title: DNase-seq from SKM-1 (ENCSR433QRR)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR228MIG)


title: Flow-FISH CRISPR screen from K562 (ENCSR226BBM)


title: DNase-seq from K562 (ENCSR224ZWD)


title: DNase-seq from activated B cell (ENCSR439ZKZ)


title: DNase-seq from MCF-7 (ENCSR228KNZ)


title: DNase-seq from NCI-H226 (ENCSR433PEV)


title: proliferation CRISPR screen from K562 (ENCSR434TFF)

summary:
Tiling, dCas9-VPR/CRISPRa proliferation screen at the GATA1, MYB, and ZMYND8 loci

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: proliferation CRISPR screen from K562 (ENCSR432QJF)


title: proliferation CRISPR screen from K562 (ENCSR223KWN)

summary:
Functional characterization experiment for tiling, dCas9-KRAB/CRISPRi proliferation screens at CTCF motifs in loop anchors

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: STARR-seq from glutamatergic neuron (ENCSR433JKU)


title: DNase-seq from CD14-positive monocyte (ENCSR223HHH)


title: Flow-FISH CRISPR screen from K562 (ENCSR432OGR)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR432IUH)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR431YXV)


title: DNase-seq from K562 (ENCSR222XVJ)


title: PRO-cap from parotid gland (ENCSR431OQI)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Parotid gland.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from natural killer cell (ENCSR220XLJ)


title: PRO-cap from endothelial cell (ENCSR222JNI)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PGP-1 derived endothelial cells.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR431BSG)


title: PRO-cap from thyroid gland (ENCSR431MXP)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Thyroid gland.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: long read scRNA-seq from adrenal gland (ENCSR431FYK)

summary:
ONT long-read B6/Cast F1 adrenal P36 male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from A549 (ENCSR219IHS)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Non-small cell adenocarcinoma cell line.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from heart right ventricle (ENCSR219QKX)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right ventricle of heart.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from inflammatory macrophage (ENCSR429YWF)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR431AMA)


title: PRO-cap from lower lobe of left lung (ENCSR216UNW)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Lower lobe of left lung.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from HCT116 (ENCSR216YZD)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from K562 (ENCSR429XWK)


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCSR216FUJ)


title: Control CRISPR screen from F123 (ENCSR226EZK)


title: DNase-seq from left colon (ENCSR429DOY)


title: PRO-cap from left colon (ENCSR220OLX)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left colon.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control CRISPR screen from K562 (ENCSR429DUU)


title: Flow-FISH CRISPR screen from K562 (ENCSR220YCE)


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR216AOU)


title: PRO-cap from GM23338 (ENCSR215OJB)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PGP-1 iPSCs via Sendai-viral Yamanaka factors.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from heart left ventricle (ENCSR426RMA)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left ventricle of heart.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from spleen (ENCSR219NJB)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Spleen.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR215NSJ)


title: Control CRISPR screen from WTC11 (ENCSR427OPP)


title: DNase-seq from T47D (ENCSR426GYH)


title: DNase-seq from GOT3 (ENCSR218CZK)


title: Flow-FISH CRISPR screen from K562 (ENCSR426GWZ)


title: DNase-seq from pancreas (ENCSR426DTX)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR215LLE)


title: Flow-FISH CRISPR screen from K562 (ENCSR425RUY)

summary:
MYC

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from T47D (ENCSR215FXP)


title: DNase-seq from CD14-positive monocyte (ENCSR213GEE)


title: DNase-seq from T47D (ENCSR212NFV)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR213VBE)


title: DNase-seq from K562 (ENCSR425QOB)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR213CHG)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR424HIL)


title: Flow-FISH CRISPR screen from GM12878 (ENCSR214PXB)


title: DNase-seq from K562 (ENCSR212ZFB)


title: long read scRNA-seq from adrenal gland (ENCSR423FFY)

summary:
PacBio long-read B6/Cast F1 adrenal P36 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from HL-60 (ENCSR420HTC)


title: PRO-cap from breast (ENCSR212GWU)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Breast mammary.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR427ERR)

summary:
FADS2

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from pancreas (ENCSR423PMZ)


title: DNase-seq from activated T-cell (ENCSR212ALN)


title: DNase-seq from HUDEP-2 (ENCSR417MZR)


title: Flow-FISH CRISPR screen from K562 (ENCSR211TEA)


title: PRO-cap from spleen (ENCSR417NJC)


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCSR211RMM)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR419WOC)


title: Control CRISPR screen from WTC11 (ENCSR418JRB)


title: DNase-seq from T-helper 2 cell (ENCSR213QAQ)


title: STARR-seq from activated T-helper 17 cell (ENCSR417EQC)


title: DNase-seq from immature natural killer cell (ENCSR209VCK)


title: DNase-seq from B cell (ENCSR415DLI)


title: DNase-seq from K562 (ENCSR416PRI)


title: DNase-seq from left cerebral cortex (ENCSR414DJM)


title: Flow-FISH CRISPR screen from K562 (ENCSR417AIR)


title: total RNA-seq from T-helper 2 cell (ENCSR211JWD)


title: DNase-seq from NCI-H526 (ENCSR209QRA)


title: Flow-FISH CRISPR screen from K562 (ENCSR209UBX)


title: DNase-seq from HUDEP-2 (ENCSR413EBD)


title: Flow-FISH CRISPR screen from K562 (ENCSR412ORQ)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR410FVX)


title: DNase-seq from activated B cell (ENCSR410APR)


title: Flow-FISH CRISPR screen from K562 (ENCSR209NWZ)


title: Flow-FISH CRISPR screen from K562 (ENCSR411LLP)


title: Flow-FISH CRISPR screen from K562 (ENCSR410HCJ)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR407IGM)


title: DNase-seq from NCI-H1694 (ENCSR208GRN)


title: Flow-FISH CRISPR screen from K562 (ENCSR209FEJ)


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCSR209HFQ)


title: DNase-seq from OCI-AML2 (ENCSR409DBT)


title: PRO-cap from adrenal gland (ENCSR408RHY)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Adrenal gland.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from endothelial cell of umbilical vein (ENCSR208VER)


title: DNase-seq from NOMO-1 (ENCSR407GPV)


title: proliferation CRISPR screen from neural progenitor cell (ENCSR406XUG)


title: DNase-seq from immature natural killer cell (ENCSR208ALL)


title: Flow-FISH CRISPR screen from K562 (ENCSR208BAL)


title: long read scRNA-seq from layer of hippocampus (ENCSR405VKO)

summary:
ONT long-read B6/Cast F1 hippocampus P2mo male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from cerebellum (ENCSR407CCJ)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Cerebellum.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCSR404FTK)


title: DNase-seq from NCI-H446 (ENCSR403VFN)


title: DNase-seq from suppressor macrophage (ENCSR206KER)


title: Flow-FISH CRISPR screen from K562 (ENCSR203XLZ)


title: Flow-FISH CRISPR screen from K562 (ENCSR205YWZ)


title: Flow-FISH CRISPR screen from K562 (ENCSR403PAE)


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCSR203NQT)


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCSR402WYE)


title: total RNA-seq from T-cell (ENCSR402EKP)


title: Flow-FISH CRISPR screen from BJAB (ENCSR203KCP)


title: DNase-seq from HCT116 (ENCSR400KNW)


title: Flow-FISH CRISPR screen from BJAB (ENCSR400ONN)


title: FACS CRISPR screen from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR202QXN)


title: PRO-cap from lung (ENCSR997YHR)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Lung.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD14-positive monocyte (ENCSR201XLV)


title: proliferation CRISPR screen from K562 (ENCSR403LMA)

summary:
Tiling, dCas9-KRAB/CRISPRi proliferation screen at the GATA1, MYB, and ZMYND8 loci

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR403KKH)


title: proliferation CRISPR screen from K562 (ENCSR995JLE)

summary:
CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in K562 leukemia cells

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR992SOX)


title: PRO-cap from right atrium auricular region (ENCSR997INZ)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right atrium auricular region of heart.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from mucosa of descending colon (ENCSR995FAO)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Mucosa of descending colon.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR991AXZ)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR992GOJ)


title: DNase-seq from T47D (ENCSR994VNR)


title: Flow-FISH CRISPR screen from K562 (ENCSR991RLW)


title: PRO-cap from right lobe of liver (ENCSR992HBP)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right lobe of liver.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from heart (ENCSR989YAW)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR990EYX)


title: DNase-seq from suppressor macrophage (ENCSR994OJO)


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR988EYC)


title: Flow-FISH CRISPR screen from K562 (ENCSR989UTR)

summary:
FEN1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from SW 1271 (ENCSR987UVP)


title: DNase-seq from MCF-7 (ENCSR996CIQ)


title: DNase-seq from inflammatory macrophage (ENCSR998XKB)


title: DNase-seq from inflammatory macrophage (ENCSR989RNC)


title: DNase-seq from CD4-positive, alpha-beta memory T cell (ENCSR986NEV)


title: DNase-seq from HCT116 (ENCSR986ZSH)


title: long read scRNA-seq from layer of hippocampus (ENCSR991UOI)

summary:
ONT long-read B6/Cast F1 hippocampus P10 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCSR985PID)


title: DNase-seq from K562 (ENCSR986KCO)


title: total RNA-seq from T-helper 2 cell (ENCSR986CSD)


title: DNase-seq from immature natural killer cell (ENCSR987TNB)


title: Flow-FISH CRISPR screen from K562 (ENCSR985KPT)


title: Flow-FISH CRISPR screen from K562 (ENCSR983XJL)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR985FKG)


title: proliferation CRISPR screen from DU 145 (ENCSR984PEG)

summary:
Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from suppressor macrophage (ENCSR983UJS)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR984TLG)


title: STARR-seq from SH-SY5Y (ENCSR983SZZ)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR982BNM)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR983DPK)


title: Flow-FISH CRISPR screen from K562 (ENCSR980RCS)


title: DNase-seq from MCF-7 (ENCSR978MRT)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR979IWW)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR978KAK)


title: long read scRNA-seq from layer of hippocampus (ENCSR976OMS)

summary:
ONT long-read B6/Cast F1 hippocampus P10 male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from regulatory T cell (ENCSR980GQZ)


title: DNase-seq from T-cell (ENCSR977NYS)


title: DNase-seq from HUDEP-2 (ENCSR978CYN)


title: Flow-FISH CRISPR screen from K562 (ENCSR976NSO)


title: long read scRNA-seq from layer of hippocampus (ENCSR975GDE)

summary:
ONT long-read B6/Cast F1 hippocampus P14 female ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD14-positive monocyte (ENCSR974QPL)


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCSR980TGS)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR974YJG)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR976CAP)


title: DNase-seq from T47D (ENCSR974OOY)


title: total RNA-seq from T-helper 17 cell (ENCSR973CTO)


title: PRO-cap from ReNcell CX (ENCSR973QQI)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Neural progenitor cell line.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR972IXB)


title: DNase-seq from inflammatory macrophage (ENCSR970HKH)


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR970HKQ)


title: DNase-seq from T47D (ENCSR970IJN)


title: PRO-cap from REH cell (ENCSR983JFU)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in REH.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from adrenal gland (ENCSR970ACM)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Adrenal gland.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from putamen (ENCSR970HYV)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR977MYO)


title: PRO-cap from lower lobe of left lung (ENCSR967RHN)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Lower lobe of left lung.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR972MPK)


title: DNase-seq from MCF-7 (ENCSR967BTM)


title: PRO-cap from HCT116 (ENCSR966RLG)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in SMARCA5_T.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from ovary (ENCSR966LKR)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR962BSK)


title: DNase-seq from UT-7 (ENCSR964IYB)


title: DNase-seq from left lung (ENCSR964DJB)


title: PRO-cap from sternocleidomastoid (ENCSR964OON)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Sternocleidomastoid muscle.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR957ATV)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR961WRZ)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR968CBW)


title: DNase-seq from MCF-7 (ENCSR961EUI)


title: long read scRNA-seq from layer of hippocampus (ENCSR962GMG)

summary:
ONT long-read B6/Cast F1 hippocampus P25 female ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from regulatory T cell (ENCSR965WUE)


title: PRO-cap from heart left ventricle (ENCSR961UBB)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left ventricle of heart.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR969XPT)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR966NJV)


title: PRO-cap from right ventricle myocardium (ENCSR959JOB)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right ventricle myocardium inferior of heart.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from suprapubic skin (ENCSR956DBV)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Suprapubic skin.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from T47D (ENCSR958TJC)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR956PYO)


title: DNase-seq from stimulated activated naive CD4-positive, alpha-beta T cell (ENCSR956ISH)


title: Flow-FISH CRISPR screen from THP-1 (ENCSR954RPE)


title: Flow-FISH CRISPR screen from K562 (ENCSR953OZA)


title: Flow-FISH CRISPR screen from Jurkat (ENCSR952HII)


title: DNase-seq from K562 (ENCSR952FRY)


title: Flow-FISH CRISPR screen from K562 (ENCSR953JTQ)


title: Flow-FISH CRISPR screen from BJAB (ENCSR955XRR)


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR956DYM)


title: total RNA-seq from T-helper 17 cell (ENCSR954LXW)


title: long read scRNA-seq from layer of hippocampus (ENCSR955GIF)

summary:
ONT long-read B6/Cast F1 hippocampus P18-20mo male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from immature natural killer cell (ENCSR951TBX)


title: DNase-seq from T47D (ENCSR948LTO)


title: DNase-seq from K562 (ENCSR950OFC)


title: DNase-seq from T47D (ENCSR952MLE)


title: FACS CRISPR screen from glutamatergic neuron (ENCSR952RDF)


title: Flow-FISH CRISPR screen from K562 (ENCSR955LSF)


title: DNase-seq from MCF-7 (ENCSR950VDM)


title: DNase-seq from HUDEP-2 (ENCSR949QCD)


title: DNase-seq from K562 (ENCSR946BYE)


title: DNase-seq from T47D (ENCSR946HTA)


title: Flow-FISH CRISPR screen from K562 (ENCSR951RMF)

summary:
PVT1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD14-positive monocyte (ENCSR943TGB)


title: STARR-seq from pancreas (ENCSR948LAJ)


title: DNase-seq from lower lobe of left lung (ENCSR948JPR)


title: STARR-seq from activated T-helper 1 cell (ENCSR945FEC)


title: DNase-seq from AG09319 (ENCSR943TDK)


title: DNase-seq from activated B cell (ENCSR947XQR)


title: DNase-seq from brain (ENCSR941URS)


title: DNase-seq from SHP77 (ENCSR942TYR)


title: DNase-seq from immature natural killer cell (ENCSR945FUE)


title: PRO-cap from gastroesophageal sphincter (ENCSR946MDO)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Gastroesophageal sphincter.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD14-positive monocyte (ENCSR956AOH)


title: DNase-seq from CD14-positive monocyte (ENCSR943WGU)


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCSR944FRU)


title: DNase-seq from MCF-7 (ENCSR941MZU)


title: PRO-cap from SEM (ENCSR944DTY)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in SEM.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR938WAX)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR938ILX)


title: DNase-seq from heart left ventricle (ENCSR938ZIA)


title: Flow-FISH CRISPR screen from K562 (ENCSR938FTD)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR940WCM)


title: DNase-seq from T47D (ENCSR937PIT)


title: DNase-seq from OCI-LY7 (ENCSR941CNT)


title: DNase-seq from MCF-7 (ENCSR936YZZ)


title: PRO-cap from Metastatic Breast Carcinoma in the Ovary (ENCSR934ZMQ)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to ovary.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from ovary (ENCSR940QKZ)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ovary.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD8-positive, alpha-beta memory T cell (ENCSR932FDJ)


title: DNase-seq from suppressor macrophage (ENCSR930UXG)


title: DNase-seq from left lung (ENCSR934FJL)


title: DNase-seq from activated T-cell (ENCSR929DML)


title: Flow-FISH CRISPR screen from THP-1 (ENCSR936ITA)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR931GDW)


title: Control CRISPR screen from F123 (ENCSR928AKC)


title: PRO-cap from lower leg skin (ENCSR928ZWP)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Lower leg skin.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from omental fat pad (ENCSR926PFT)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Omental fat pad.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR925WKN)


title: DNase-seq from T-helper 17 cell (ENCSR929BII)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR926QVW)


title: Flow-FISH CRISPR screen from K562 (ENCSR925SNA)


title: Control CRISPR screen from K562 (ENCSR925GGJ)


title: Control CRISPR screen from WTC11 (ENCSR924HYA)


title: DNase-seq from HCT116 (ENCSR933DDO)


title: DNase-seq from MCF-7 (ENCSR919HBQ)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR922GGG)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR922ZKR)


title: long read scRNA-seq from layer of hippocampus (ENCSR917FMK)

summary:
PacBio long-read B6/Cast F1 hippocampus P25 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR918XFE)


title: DNase-seq from OCI-M2 (ENCSR916WCV)


title: DNase-seq from CD14-positive monocyte (ENCSR916HXX)


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR921CMS)


title: STARR-seq from K562 (ENCSR926NDZ)


title: DNase-seq from HUDEP-2 (ENCSR916FHK)


title: PRO-cap from cerebral cortex (ENCSR915VCN)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Temporal lobe of cerebral cortex.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from suppressor macrophage (ENCSR924DAW)


title: DNase-seq from activated T-cell (ENCSR915KYY)


title: DNase-seq from T47D (ENCSR914YGK)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR915IJN)


title: DNase-seq from MCF-7 (ENCSR914NYH)


title: DNase-seq from CD14-positive monocyte (ENCSR913VNJ)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR914WLK)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR926VLE)


title: DNase-seq from NCI-H889 (ENCSR912JQY)


title: DNase-seq from K562 (ENCSR911UZT)


title: DNase-seq from GM12878 (ENCSR910MAP)


title: Flow-FISH CRISPR screen from K562 (ENCSR913DHP)


title: DNase-seq from CD4-positive, alpha-beta memory T cell (ENCSR909JZY)


title: Flow-FISH CRISPR screen from K562 (ENCSR906TMG)


title: DNase-seq from activated T-cell (ENCSR906WMO)


title: Flow-FISH CRISPR screen from GM12878 (ENCSR910LPP)


title: DNase-seq from CD14-positive monocyte (ENCSR906STR)


title: total RNA-seq from T-cell (ENCSR907YLF)


title: DNase-seq from occipital lobe (ENCSR905UAW)


title: DNase-seq from HUDEP-2 (ENCSR912OBS)


title: DNase-seq from T47D (ENCSR901CEV)


title: DNase-seq from T47D (ENCSR900NYS)


title: proliferation CRISPR screen from HCT116 (ENCSR901RFR)

summary:
Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control CRISPR screen from WTC11 (ENCSR900LDE)


title: DNase-seq from Kasumi-1 (ENCSR899GGO)


title: proliferation CRISPR screen from WTC11 (ENCSR900AXT)

summary:
Cell survival-based CRISPR screen targeting genomic regions near MSH2, MSH6, MLH1, PMS2, PCNA and HPRT1 genes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from immature natural killer cell (ENCSR897HPT)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR898VHI)


title: DNase-seq from AML-193 (ENCSR897GRM)


title: DNase-seq from inflammatory macrophage (ENCSR906FTC)


title: DNase-seq from THP-1 (ENCSR896ADX)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR905WMP)


title: proliferation CRISPR screen from K562 (ENCSR904DYJ)

summary:
Functional characterization experiment for tiling, Cas9/CRISPRk proliferation screens at CTCF motifs in loop anchors

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR897GNT)


title: FACS CRISPR screen from F123 (ENCSR897BBN)


title: STARR-seq from A549 (ENCSR895FDL)


title: DNase-seq from K562 (ENCSR892UMF)


title: Flow-FISH CRISPR screen from K562 (ENCSR894QUJ)


title: PRO-cap from ovary (ENCSR889QVM)


title: DNase-seq from HUDEP-2 (ENCSR888TVR)


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCSR888DKJ)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD14-positive monocyte (ENCSR889CFS)


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR903KED)


title: DNase-seq from suppressor macrophage (ENCSR888CYN)


title: long read scRNA-seq from adrenal gland (ENCSR899YHN)

summary:
PacBio long-read B6/Cast F1 adrenal P36 male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from DMS 273 (ENCSR885PNE)


title: DNase-seq from brain (ENCSR882KPJ)


title: DNase-seq from T-cell (ENCSR896FUU)


title: PRO-cap from uterus (ENCSR883HAT)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Uterus.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR891QSP)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from NCI-H1417 (ENCSR882HWI)


title: DNase-seq from SKM-1 (ENCSR881NJY)


title: DNase-seq from HUDEP-2 (ENCSR894TXO)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR878VDA)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR878QFU)


title: DNase-seq from T-cell (ENCSR880QIK)


title: PRO-cap from Metastatic Liver Carcinoma in the Adrenal Gland (ENCSR876AEQ)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic liver cancer to adrenal gland.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR877UAZ)


title: Flow-FISH CRISPR screen from K562 (ENCSR877MKJ)


title: DNase-seq from MCF-7 (ENCSR877ISD)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR877MQW)


title: PRO-cap from anterior vena cava (ENCSR881RXX)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Superior vena cava.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from NCI-H524 (ENCSR881NZC)


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR876NYG)


title: Flow-FISH CRISPR screen from K562 (ENCSR875IOR)


title: DNase-seq from T47D (ENCSR874VGY)


title: PRO-cap from bile duct (ENCSR889PCF)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Bile duct.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR875BAF)


title: STARR-seq from pancreas (ENCSR874TTC)


title: DNase-seq from T47D (ENCSR873KPG)


title: PRO-cap from right cardiac atrium (ENCSR883PPD)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right atrium of heart.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR872SMV)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR870MGV)


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR873VSJ)


title: DNase-seq from naive B cell (ENCSR871ZIX)


title: Flow-FISH CRISPR screen from K562 (ENCSR873ROU)


title: DNase-seq from HUDEP-2 (ENCSR873CJI)


title: DNase-seq from K562 (ENCSR880PSE)


title: DNase-seq from pancreas (ENCSR866MJM)


title: long read scRNA-seq from adrenal gland (ENCSR870HRG)

summary:
ONT long-read B6/Cast F1 adrenal P10 female ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control CRISPR screen from K562 (ENCSR865UTQ)


title: Flow-FISH CRISPR screen from K562 (ENCSR867VWP)

summary:
NMU

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from inflammatory macrophage (ENCSR866LHK)


title: DNase-seq from central memory CD4-positive, alpha-beta T cell (ENCSR865TVC)


title: DNase-seq from MCF-7 (ENCSR865KRO)


title: DNase-seq from T47D (ENCSR865FBO)


title: DNase-seq from NCI-H2141 (ENCSR863REG)


title: DNase-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR862SMY)


title: DNase-seq from inflammatory macrophage (ENCSR862FLW)


title: DNase-seq from HUDEP-2 (ENCSR861FFY)


title: DNase-seq from MCF-7 (ENCSR858XUZ)


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR862IXM)


title: DNase-seq from immature natural killer cell (ENCSR864YGM)


title: long read scRNA-seq from layer of hippocampus (ENCSR860HBH)

summary:
ONT long-read B6/Cast F1 hippocampus P2mo male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR862VUK)


title: Flow-FISH CRISPR screen from BJAB (ENCSR857QNP)


title: STARR-seq from K562 (ENCSR858MPS)


title: DNase-seq from NCI-H345 (ENCSR864JKT)


title: DNase-seq from HUDEP-2 (ENCSR855ZCO)


title: DNase-seq from DMS153 (ENCSR856KIP)


title: DNase-seq from activated naive CD4-positive, alpha-beta T cell (ENCSR856UND)


title: long read scRNA-seq from layer of hippocampus (ENCSR854MEF)

summary:
ONT long-read B6/Cast F1 hippocampus P10 female normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from HCT116 (ENCSR851VTF)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR850JHZ)


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR851DQZ)


title: Flow-FISH CRISPR screen from K562 (ENCSR851UJM)


title: DNase-seq from NCI-H1417 (ENCSR850HTW)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR849MXJ)


title: DNase-seq from NCI-H889 (ENCSR850GGK)


title: DNase-seq from MCF-7 (ENCSR851KRV)


title: Flow-FISH CRISPR screen from K562 (ENCSR856ZPR)


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR848VCF)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR854HBF)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR846HUP)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR846BLW)


title: DNase-seq from UT-7 (ENCSR846ADQ)


title: PRO-cap from right lobe of liver (ENCSR845LKT)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right lobe of liver.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR845HOD)


title: DNase-seq from K562 (ENCSR845BLM)


title: PRO-cap from prostate gland (ENCSR845TMF)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Prostate gland.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR849BLB)


title: DNase-seq from K562 (ENCSR844SKG)


title: DNase-seq from activated T-helper 9 cell (ENCSR842FLD)


title: DNase-seq from T-helper 2 cell (ENCSR842OFU)


title: Flow-FISH CRISPR screen from K562 (ENCSR844IEV)


title: PRO-cap from monocyte (ENCSR841GXY)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Monocytes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from HUDEP-2 (ENCSR848KBM)


title: proliferation CRISPR screen from K562 (ENCSR842CIE)


title: DNase-seq from suppressor macrophage (ENCSR837KQM)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR837WQM)


title: Flow-FISH CRISPR screen from K562 (ENCSR840TDD)


title: proliferation CRISPR screen from HCT116 (ENCSR847SCB)


title: ATAC-seq from regulatory T cell (ENCSR844TIU)


title: proliferation CRISPR screen from K562 (ENCSR839FIS)

summary:
Functional characterization experiment for dCas9-KRAB/CRISPRi tiling proliferation screens at a subset of cCREs around essential genes

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from HUDEP-2 (ENCSR834YVZ)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR851YCL)


title: DNase-seq from adrenal gland (ENCSR833DYD)


title: DNase-seq from effector memory CD8-positive, alpha-beta T cell (ENCSR831ZGB)


title: PRO-cap from rectum (ENCSR836XBB)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Rectum.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: FACS CRISPR screen from K562 (ENCSR831DXR)

summary:
CRISPR screen targeting candidate CREs following FACS low

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: long read scRNA-seq from adrenal gland (ENCSR831BQT)

summary:
ONT long-read B6/Cast F1 adrenal P14 male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from HUDEP-2 (ENCSR832KIO)


title: Flow-FISH CRISPR screen from K562 (ENCSR830SSC)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR830WDA)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR830BKZ)


title: PRO-cap from peripheral blood mononuclear cell (ENCSR834OVY)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from K562 (ENCSR828ZUY)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from natural killer cell (ENCSR829KWG)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in NK cells.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from effector CD8-positive, alpha-beta T cell (ENCSR826AAY)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR825AHY)


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCSR828DHC)


title: DNase-seq from HUDEP-2 (ENCSR824QCJ)


title: DNase-seq from HUDEP-2 (ENCSR822YCA)


title: DNase-seq from right lobe of liver (ENCSR824IRT)


title: DNase-seq from activated effector memory CD4-positive, alpha-beta T cell (ENCSR823UQF)


title: DNase-seq from T47D (ENCSR821UFQ)


title: Flow-FISH CRISPR screen from K562 (ENCSR822DCN)


title: Flow-FISH CRISPR screen from K562 (ENCSR821VOB)


title: DNase-seq from K562 (ENCSR820VVZ)


title: DNase-seq from brain (ENCSR819UGJ)


title: PRO-cap from spleen (ENCSR821MIF)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Spleen.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from spleen (ENCSR820ICM)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR817DXI)


title: Flow-FISH CRISPR screen from GM12878 (ENCSR820ANU)


title: Flow-FISH CRISPR screen from BJAB (ENCSR830BWV)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR818QNO)


title: DNase-seq from midbrain (ENCSR816DPN)


title: DNase-seq from pancreas (ENCSR816IUS)


title: Control CRISPR screen from K562 (ENCSR819UNC)

summary:
Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: FACS CRISPR screen from F123 (ENCSR814OXH)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR814VJU)


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCSR811DXO)


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCSR813CRU)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR811BXU)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR809QZB)


title: PRO-cap from heart left ventricle (ENCSR812JCT)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left ventricle of heart.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from DMS79 (ENCSR813RYR)


title: proliferation CRISPR screen from K562 (ENCSR816GWF)

summary:
Functional characterization experiment for tiling, dCas9/CRISPRd proliferation screens at CTCF motifs in loop anchors

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from stimulated activated naive CD4-positive, alpha-beta T cell (ENCSR808LCB)


title: Flow-FISH CRISPR screen from K562 (ENCSR818BYM)


title: Flow-FISH CRISPR screen from K562 (ENCSR810UNL)


title: DNase-seq from common myeloid progenitor, CD34-positive (ENCSR807KAK)


title: total RNA-seq from regulatory T cell (ENCSR806BUK)


title: Flow-FISH CRISPR screen from K562 (ENCSR808JNJ)

summary:
HDAC6

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR807ESI)

summary:
FEN1

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Control CRISPR screen from K562 (ENCSR804HRD)


title: DNase-seq from MCF-7 (ENCSR801WOS)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR804YMP)


title: Flow-FISH CRISPR screen from K562 (ENCSR804IMB)


title: DNase-seq from HCT116 (ENCSR798CAB)


title: PRO-cap from Metastatic Breast Carcinoma in the Ovary (ENCSR810UBG)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to ovary.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from activated T-cell (ENCSR799RTU)


title: DNase-seq from HUDEP-2 (ENCSR803GHI)


title: DNase-seq from T47D (ENCSR798KFF)


title: PRO-cap from peripheral blood mononuclear cell (ENCSR795NHV)


title: STARR-seq from A549 (ENCSR802ODH)


title: proliferation CRISPR screen from glutamatergic neuron (ENCSR800VEG)


title: PRO-cap from LUHMES (ENCSR796JNK)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Mesencephalic neuronal cell line.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR794YNM)


title: Flow-FISH CRISPR screen from BJAB (ENCSR799KTT)


title: DNase-seq from T-helper 17 cell (ENCSR793UEF)


title: DNase-seq from AML-193 (ENCSR793EQP)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR795FXU)


title: PRO-cap from spleen (ENCSR797AOQ)


title: proliferation CRISPR screen from WTC11 (ENCSR793DSE)

summary:
Cell survival-based CRISPR screen targeting genomic regions near MSH2, MSH6, MLH1, PMS2, PCNA and HPRT1 genes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from MCF-7 (ENCSR793VMR)


title: DNase-seq from immature natural killer cell (ENCSR792GOP)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR789SDE)


title: DNase-seq from MCF-7 (ENCSR792TSK)


title: PRO-cap from sciatic nerve (ENCSR794VAJ)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Sciatic nerve.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from suppressor macrophage (ENCSR791JIS)


title: DNase-seq from DND-41 (ENCSR787PBO)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR792NKI)


title: PRO-cap from colonic mucosa (ENCSR784YIV)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Colonic mucosa.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD4-positive, alpha-beta memory T cell (ENCSR783PRH)


title: DNase-seq from NCI-H1930 (ENCSR782VNC)


title: DNase-seq from HUDEP-2 (ENCSR783JNB)


title: DNase-seq from T47D (ENCSR783DIV)


title: Flow-FISH CRISPR screen from K562 (ENCSR782UNN)


title: PRO-cap from vermiform appendix (ENCSR784FKF)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Appendix.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD14-positive monocyte (ENCSR781KKA)


title: DNase-seq from WTC11 (ENCSR779ZGR)


title: DNase-seq from NCI-H209 (ENCSR777DJH)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR773RLS)


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCSR779CRB)


title: Flow-FISH CRISPR screen from K562 (ENCSR773ZME)


title: DNase-seq from T-cell (ENCSR773GED)


title: Flow-FISH CRISPR screen from K562 (ENCSR774WEK)


title: DNase-seq from MCF-7 (ENCSR771IMA)


title: PRO-cap from transverse colon (ENCSR769SLJ)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Transverse colon.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from HCT116 (ENCSR779EBR)


title: Control CRISPR screen from OCI-AML2 (ENCSR770ENU)

summary:
CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in OCI-AML2 acute myeloid leukemia cells

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: long read scRNA-seq from adrenal gland (ENCSR770VEJ)

summary:
ONT long-read B6/Cast F1 adrenal P14 female ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from T47D (ENCSR768RXT)

summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from activated T-cell (ENCSR768BZY)


title: DNase-seq from activated T-cell (ENCSR776JYF)


title: long read scRNA-seq from adrenal gland (ENCSR766SVW)

summary:
PacBio long-read B6/Cast F1 adrenal P18-20mo male normal 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: Flow-FISH CRISPR screen from K562 (ENCSR765VKA)


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR772GHU)


title: DNase-seq from activated T-cell (ENCSR765HIX)


title: Flow-FISH CRISPR screen from K562 (ENCSR765SJR)


title: DNase-seq from suppressor macrophage (ENCSR765EPO)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR763VFD)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR767KPT)


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCSR764EVU)


title: Flow-FISH CRISPR screen from K562 (ENCSR764XSQ)


title: DNase-seq from immature natural killer cell (ENCSR762ZQK)


title: DNase-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCSR758RFT)


title: DNase-seq from muscle of leg (ENCSR760OPF)


title: DNase-seq from T47D (ENCSR763RBN)


title: PRO-cap from thyroid gland (ENCSR756CCD)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Thyroid gland.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD4-positive, alpha-beta memory T cell (ENCSR756RES)


title: PRO-cap from liver (ENCSR753TEA)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Liver.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: PRO-cap from ovary (ENCSR766KPR)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ovary.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from inflammatory macrophage (ENCSR756ZVZ)


title: Control CRISPR screen from MDA-MB-231 (ENCSR752LKV)

summary:
Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: total RNA-seq from T-cell (ENCSR751BRT)


title: DNase-seq from NCI-H1436 (ENCSR750RKQ)


title: long read scRNA-seq from adrenal gland (ENCSR750VIU)

summary:
ONT long-read B6/Cast F1 adrenal P2mo male ont_match 2k

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR751HTI)


title: DNase-seq from suppressor macrophage (ENCSR756KBW)


title: FACS CRISPR screen from glutamatergic neuron (ENCSR750UIY)


title: PRO-cap from duodenum (ENCSR754LBG)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Duodenum.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCSR752AMS)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR753LFV)


title: PRO-cap from Peyer's patch (ENCSR757HMG)

summary:
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Peyer's patch.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf


title: STARR-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR763SPB)


title: DNase-seq from NCI-H1417 (ENCSR750JXL)


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCSR747VKR)


title: STARR-seq from WTC11 (ENCSR749AQU)


title: Flow-FISH CRISPR screen from GM12878 (ENCSR745RFL)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCSR759IXC)


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCSR747HAA)


title: total RNA-seq from T-helper 17 cell (ENCSR751OOH)


title: DNase-seq from left colon (ENCSR746QXL)


title: Flow-FISH CRISPR screen from K562 (ENCSR744VZW)


title: STARR-seq from activated naive CD4-positive, alpha-beta T cell (ENCSR744ZON)


title: DNase-seq from Kasumi-1 (ENCSR744OJL)