title: Lipopolysaccharide (LPS) and  2-Methyl-thio-ATP treated Raw 264.7 cells 1 hr vs untreated RAw 264.7 cells 1 hr. (set 1)

description:
All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from Lipopolysaccharide (100ng/100pM LPS binding protein) and 2-Methyl-thio-ATP (500uM) treated RAW 264.7 cells cultured for 1 hour.
All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.7 cells cultured for 1 hour.

source_name: Total RNA from LPS (100ng/100pM LPS binding protein) and 2MA (500uM) treated RAW 264.7 cells was label with Cyanine-3 (green).


title: 17-2_17-1

status: Public on Oct 20 2004

type: RNA

city: Minamidai, Kawagoe

first: Toshiro

last: Saito

state: Saitama

department: Life Science Group

country: Japan

institute: Hitachi, Ltd.

description:
Sample Tissue: peripheral blood
Subject No.: 17
Disease: diabetes

molecule: total RNA

organism: Homo sapiens

source_name: after listening to a Japanese comic story

source_name: before listening to a Japanese comic story


title: NMC_Rat_15k_cDNA_Ser6-14

city: Trondheim

first: Kristin

last: Nørsett

department: Dept of Cancer Research and Molecular Medicine

country: Norway

institute: Norwegian University of Science and Technology

description: This represents hybridization of gastric mucosa total RNA from one of nine rats given omeprazole (400 micromol/kg omeprazole once daily for 10 weeks) vs. gastric mucosa total RNA pool from seven control rats.

organism: Rattus norvegicus

source_name: Gastric mucosa from omeprazole dosed rat

source_name: Gastric mucosa from control rats


title: 16-2_16-1

description:
Sample Tissue: peripheral blood
Subject No.: 16
Disease: diabetes


title: 14-2_14-1

description:
Sample Tissue: peripheral blood
Subject No.: 14
Disease: diabetes


title: Untreated Raw 264.7 cells 1 hour vs Lipopolysaccharide (LPS) treated RAw 264.7 cells 1 hour. (set 1)

status: Public on Oct 23 2004

city: Pasadena

first: Sangdun

last: Choi

state: CA

address: 1200 E. California Blvd

department: Biology

country: USA

institute: California Institute of Technology

description:
All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 1 hour.
All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from Lipopolysaccharide (100ng/100pM LPS binding protein) treated RAW 264.7 cells cultured for 1 hour.

organism: Mus musculus

source_name: Total RNA from untreated RAW 264.7 cells was labeled with Cyanine-3 (green).

source_name: Total RNA from LPS (100ng/100pM LPS binding protein) treated RAW 264.7 cells was labeled with Cyanine-5 (red).


title: 8-2_8-1

description:
Sample Tissue: peripheral blood
Subject No.: 8
Disease: diabetes


title: 7-2_7-1

description:
Sample Tissue: peripheral blood
Subject No.: 7
Disease: diabetes


title: Fbn1Het2

status: Public on Oct 21 2004

city: Baltimore

first: Daniel

last: Judge

state: MD

address: 720 Rutland Avenue

institute: Johns Hopkins University

description: Fbn1 C1039/+

source_name: Murine mitral valve


title: 5-2_5-1

description:
Sample Tissue: peripheral blood
Subject No.: 5
Disease: diabetes


title: 3-2_3-1

description:
Sample Tissue: peripheral blood
Subject No.: 3
Disease: diabetes


title: 3-4_3-3

source_name: after listening to a monotonous academic lecture without humor

source_name: before listening to a monotonous academic lecture without humor


title: 7-4_7-3


title: NMC_Rat_15k_cDNA_Ser6-25


title: 10-2_10-1

description:
Sample Tissue: peripheral blood
Subject No.: 10
Disease: diabetes


title: NMC_Rat_15k_cDNA_Ser6-24


title: 9-2_9-1

description:
Sample Tissue: peripheral blood
Subject No.: 9
Disease: diabetes


title: 6-2_6-1

description:
Sample Tissue: peripheral blood
Subject No.: 6
Disease: diabetes


title: Untreated Raw 264.7 cells 30 minutes vs Lipopolysaccharide (LPS) treated RAw 264.7 cells 30 minutes. (set 1)

description:
All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 30 minutes.
All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from Lipopolysaccharide (100ng/100pM LPS binding protein) treated RAW 264.7 cells cultured for 30 minutes.


title: NMC_Rat_15k_cDNA_Ser6-23


title: NMC_Rat_15k_cDNA_Ser6-26


title: NMC_Rat_15k_cDNA_Ser6-20


title: 13-2_13-1

description:
Sample Tissue: peripheral blood
Subject No.: 13
Disease: diabetes


title: NMC_Rat_15k_cDNA_Ser6_18


title: resting tonsillar mast cells2

city: Yokohama

first: Yoshimichi

last: Okayama

state: Kanagawa

address: 1-7-22 Suehiro-cho Tsurumi-ku

department: Research Center for Allergy and Immunology

institute: RIKEN Yokohama Institute

description: resting human tonsillar mast cells2, 8-weeks culture in methylcellulose medium

source_name: human cultured tonsillar mast cells


title: resting lung mast cells

description: resting human lung mast cells, 10-weeks culture in methylcellulose medium

source_name: human cultured lung mast cells


title: resting Tonsillar mast cells B-2

description: 8 weeks culture

source_name: Tonsillar mast cells


title: resting tonsillar mast cells1

description: resting human tonsillar mast cells1, 8-weeks culture in methylcellulose medium

source_name: human culture tonsillar mast cells


title: Fraction 2b

city: Tucson

first: Pawel

middle: R.

last: Kiela

state: AZ

address: 1501 N. Campbell Ave.

department: Pediatrics

institute: University of Arizona

description: Swiss-Webster mice fed diet supplemented with 1% Fraction 2 (methanol) for 21 days

source_name: Liver


title: Fraction 1b

description: Swiss-Webster mice fed diet supplemented with 1% Fraction 1 (hexane) for 21 days


title: resting Tonsillar mast cells B-1

description: 8 weeks culture


title: NMC_Rat_15k_cDNA_Ser6-16

description: This represents hybridization of gastric mucosa total RNA from one of nine rats given omeprazole (400 micromol/kg omeprazole once daily for 10 weeks) vs. gastric mucosa total RNA pool from seven control rats.


title: Control 2

description: Swiss-Webster mice fed control diet


title: resting lung mast cells B-1

description: 10 weeks culture

source_name: cultured lung mast cells


title: Skmel 28

status: Public on Oct 19 2004

city: Vienna

first: Martin

last: Bilban

country: Austria

institute: Medical University of Vienna

description:
Skmel 28 human melanoma cell line
Keywords = melanoma

source_name: Skmel 28 human melanoma cells


title: Fraction 2a


title: Control 1

description: Swiss-Webster mice fed control diet


title: Fraction 1a


title: 518A2

description:
518A2 human melanoma cell line
Keywords = melanoma

source_name: 518A2 melanoma cells


title: 1-2_1-1

description:
Sample Tissue: peripheral blood
Subject No.: 1
Disease: diabetes

source_name: after listening to a Japanese comic story


title: MelJUSO

description:
Human melanoma cells
Keywords = melanoma

source_name: MelJUSO melanoma cell line, ATCC


title: A375

description:
Human melanoma cells, ATCC
Keywords = melanoma

source_name: A375 cell line


title: 2-2_2-1

description:
Sample Tissue: peripheral blood
Subject No.: 2
Disease: diabetes

source_name: before listening to a Japanese comic story


title: NMC_Rat_15k_cDNA_Ser6-17

source_name: Gastric mucosa from omeprazole dosed rat

source_name: Gastric mucosa from control rats


title: YPA - Replicate 2

status: Public on Oct 18 2004

city: Basel

first: Michael

last: Primig

state: Basel Stadt

address: Klingelbergstr 50-70

department: Genome Bioinformatics

country: Switzerland

institute: Biozentrum and Swiss Institute of Bioinformatics

description:
Cells were grown in YPA pre-sporulation medium
Keywords = benomyl sporulation saccharomyces microtubule spindle checkpoint

organism: Saccharomyces cerevisiae

source_name: Total RNA


title: YPD - Replicate 1

description:
Cells were grown in rich medium (YPD)
Keywords = benomyl sporulation saccharomyces microtubule spindle checkpoint


title: YPD - Replicate 2


title: 607B

description:
607B human melanoma cell line
Keywords = melanoma

source_name: 607B melanoma cells


title: SP4 - Replicate 2

description:
Cells were grown to saturation in YPD (YEP + 2% glucose) for 24 hours, diluted into YPA (YEP + 2% potassium acetate) at OD600= 0.3 and grown over night at 30 degree C. The sample was taken 4h after induction.
Keywords = benomyl sporulation saccharomyces microtubule spindle checkpoint


title: YPA - Replicate 1


title: SF5 - Replicate 1

description:
Cells were grown to saturation in YPD (YEP + 2% glucose) for 24 hours, diluted into YPA (YEP + 2% potassium acetate) at OD600= 0.3 and grown over night at 30 degree C. Cells were washed with sterilized water the next day and re-suspended in SPO medium (0.3% potassium acetate, pH = 7.0) at OD600= 1.9 at room temperature to induce sporulation. 4 h after induction of sporulation cells were filtered and immediately re-suspended in medium. The sample was taken 1 h after filtration.
Keywords = benomyl sporulation saccharomyces microtubule spindle checkpoint


title: Normal intestine diet #2 sample C2_003 Dnmt+/+ Min/+

city: Montreal

last: Leclerc

state: Quebec

address: 4060 Ste-Catherine West

department: Medical Genetics, Room 242

country: Canada

institute: Montreal Children's Hospital

description:
Used for Transcriptional Profiling of the Transition from Normal Intestine to Adenomas in the APC(Min/+) Mouse.
Series_description: Tissue was from male 91-days old APC(Min/+) mouse (an animal model for human colon cancer).    RNA was purified using Trizol and labeled for hybridization to high density oligonucleotide Affymetrix MG_U74Av2 arrays, using manufacturer protocol.  We measured the relative expression level of >12000 genes and ESTs.
Keywords = Mouse, Min, normal, intestine, tumor, tumour, colon cancer, gene expression, high density oligonucleotide microarrays, familial adenomatous polyposis, FAP, colorectal cancer, Affymetrix MGU74Av2 GeneChip probe array, mouse model, APC, adenomatous polyposis coli

source_name: Normal intestine


title: SF5 - Replicate 2


title: Tumor diet #3 sample T1_005 Dnmt+/- Min/+

source_name: Tumor


title: SD8 - Replicate 2

description:
Cells were grown to saturation in YPD (YEP + 2% glucose) for 24 hours, diluted into YPA (YEP + 2% potassium acetate) at OD600= 0.3 and grown over night at 30 degree C. Cells were washed with sterilized water the next day and re-suspended in SPO medium (0.3% potassium acetate, pH = 7.0) at OD600= 1.9 at room temperature to induce sporulation. DMSO (dimethyl sulfoxide, Sigma-Aldrich) was dissolved to a final concentration of 0.4% in near-boiling SPO medium. The medium was then allowed to slowly cool to room temperature. 4 h after induction of sporulation cells were filtered and immediately re-suspended in medium containing DMSO. The sample was taken 4 h after treatment with DMSO.
Keywords = benomyl sporulation saccharomyces microtubule spindle checkpoint


title: Tumor diet #3 sample T2_005 Dnmt+/+ Min/+


title: SD5 - Replicate 2

description:
Cells were grown to saturation in YPD (YEP + 2% glucose) for 24 hours, diluted into YPA (YEP + 2% potassium acetate) at OD600= 0.3 and grown over night at 30 degree C. Cells were washed with sterilized water the next day and re-suspended in SPO medium (0.3% potassium acetate, pH = 7.0) at OD600= 1.9 at room temperature to induce sporulation. DMSO (dimethyl sulfoxide, Sigma-Aldrich) was dissolved to a final concentration of 0.4% in near-boiling SPO medium. The medium was then allowed to slowly cool to room temperature. 4 h after induction of sporulation cells were filtered and immediately re-suspended in medium containing DMSO. The sample was taken 1 h after treatment with DMSO.
Keywords = benomyl sporulation saccharomyces microtubule spindle checkpoint


title: SD5 - Replicate 1


title: Tumor diet #1 sample T2_0112 Dnmt+/+ Min/+


title: SD8 - Replicate 1


title: SB5 - Replicate 2

description:
Cells were grown to saturation in YPD (YEP + 2% glucose) for 24 hours, diluted into YPA (YEP + 2% potassium acetate) at OD600= 0.3 and grown over night at 30 degree C. Cells were washed with sterilized water the next day and re-suspended in SPO medium (0.3% potassium acetate, pH = 7.0) at OD600= 1.9 at room temperature to induce sporulation. Benomyl [Methyl 1-(butylcarbamoyl)-2-benzimidazolecarbamate, Sigma-Aldrich; 30 mg/ml stock in DMSO] was dissolved to a final concentration of 0.4% in near-boiling SPO medium to avoid precipitation. The medium was then allowed to slowly cool to room temperature. 4 h after induction of sporulation cells were filtered and immediately re-suspended in medium containing Benomyl. The sample was taken 1 h after treatment with Benomyl.
Keywords = benomyl sporulation saccharomyces microtubule spindle checkpoint


title: Normal intestine diet #2 sample C1_003 Dnmt+/- Min/+


title: SH121_6H_B

status: Public on Oct 15 2004

first: Dietmar

last: Martin

department: Division of Biochemistry

institute: Biozentrum University of Basel

description: TOR2 mutant Time 6H Replicate B

source_name: Cell


title: SB5 - Replicate 1


title: Normal intestine diet #3 sample C2_005 Dnmt+/+ Min/+


title: Tumor diet #2 sample T2_003 Dnmt+/+ Min/+


title: Normal intestine diet #3 sample C1_005 Dnmt+/- Min/+


title: SB8 - Replicate 2

description:
Cells were grown to saturation in YPD (YEP + 2% glucose) for 24 hours, diluted into YPA (YEP + 2% potassium acetate) at OD600= 0.3 and grown over night at 30 degree C. Cells were washed with sterilized water the next day and re-suspended in SPO medium (0.3% potassium acetate, pH = 7.0) at OD600= 1.9 at room temperature to induce sporulation. Benomyl [Methyl 1-(butylcarbamoyl)-2-benzimidazolecarbamate, Sigma-Aldrich; 30 mg/ml stock in DMSO] was dissolved to a final concentration of 0.4% in near-boiling SPO medium to avoid precipitation. The medium was then allowed to slowly cool to room temperature. 4 h after induction of sporulation cells were filtered and immediately re-suspended in medium containing Benomyl. The sample was taken 4 h after treatment with Benomyl.
Keywords = benomyl sporulation saccharomyces microtubule spindle checkpoint


title: Tumor diet #2 sample T1_003 Dnmt+/- Min/+


title: SH121_2H_A

description: TOR2 mutant Time 2H Replicate A


title: SB8 - Replicate 1


title: Normal intestine diet #1 sample C2_0112 Dnmt+/+ Min/+


title: Comprehensive examination of bacterial diversity and community structure in a sheep rumen by improved SARST (iSARST)

type: SARST

city: Columbus

first: Zhongtang

last: Yu

state: OH

address: 2027 Coffey Rd.

department: Animal Sciences

institute: The Ohio State University

description:
The RSTs were generated using an improved version of SARST (referred to as iSARST) from the microbiome DNA extracted from the adhering fraction of the rumen content taken from a sheep. The iSARST method is going to be submitted to Nature Biotechnology for publication.
Lot batch =

organism: Bacteria

source_name: Microbiome DNA from the adhering fraction of a sheep rumen


title: Tumor diet #1 sample T1_0112 Dnmt+/- Min/+


title: SH100_0H_B

description:
Wild type
Time 0H
Replicate B


title: SH121_0H_A

description: TOR2 mutant Time 0H Replicate A


title: SH121_6H_A

description: TOR2 mutant Time 6H Replicate A


title: Normal intestine diet #1 sample C1_0112 Dnmt+/- Min/+

description:
Used for Transcriptional Profiling of the Transition from Normal Intestine to Adenomas in the APC(Min/+) Mouse.
Series_description: Tissue was from male 91-days old APC(Min/+) mouse (an animal model for human colon cancer). RNA was purified using Trizol and labeled for hybridization to high density oligonucleotide Affymetrix MG_U74Av2 arrays, using manufacturer protocol.  We measured the relative expression level of >12000 genes and ESTs.
Keywords = Mouse, Min, normal, intestine, tumor, tumour, colon cancer, gene expression, high density oligonucleotide microarrays, familial adenomatous polyposis, FAP, colorectal cancer, Affymetrix MGU74Av2 GeneChip probe array, mouse model, APC, adenomatous polyposis coli


title: DMD Subject 3, baseline, HU133A

city: Jacksonville

first: Robert

middle: C.

last: Olney

state: FL

address: 807 Children's Way

institute: Nemours Children's Clinic

description:
Subject with Duchenne Muscular Dystrophy, prior to treatment. Messenger RNA isolated from a gastrocnemius muscle needle biopsy was linearly amplified (two rounds) and biotin-labeled using the protocol of Baugh, et al (Baugh, L. R., Hill, A. A., Brown, E. L., and Hunter, C. P. Quantitative analysis of mRNA amplification by in vitro transcription. Nucleic Acids Res 29(5), E29. 2001). Labeled RNA was hybridized to array using Affymetrix' protocol.
Keywords = muscle
Keywords = Duchenne muscular dystrophy
Keywords = oxandrolone
Keywords = androgen

source_name: DMD muscle biopsy


title: SH121_2H_B

description: TOR2 mutant Time 2H Replicate B


title: SH100_2H_A

description: Wild type Time 2H Replicate A


title: SH100_0H_A

description:
Wild type
Time 0h
Replicate A


title: SH121_0H_B

description: TOR2 mutant Time 0H Replicate B


title: SH100_6H_B

description: Wild type Time 6H Replicate B


title: DMD Subject 3, post-oxandrolone, HU133A

description:
Subject with Duchenne Muscular Dystrophy, after 3-month treatment with oxandrolone (0.1mg/kg/day). Messenger RNA isolated from a gastrocnemius muscle needle biopsy was linearly amplified (two rounds) and biotin-labeled using the protocol of Baugh, et al (Baugh, L. R., Hill, A. A., Brown, E. L., and Hunter, C. P. Quantitative analysis of mRNA amplification by in vitro transcription. Nucleic Acids Res 29(5), E29. 2001). Labeled RNA was hybridized to array using Affymetrix' protocol.
Keywords = muscle
Keywords = Duchenne muscular dystrophy
Keywords = oxandrolone
Keywords = androgen


title: DMD Subject 2, post-oxandrolone, HU133A


title: DMD Subject 2, post-oxandrolone, HU133B


title: SH100_2H_B

description: Wild type Time 2H Replicate B


title: SH100_6H_A

description: Wild type Time 6H Replicate A


title: DMD Subject 1, post-oxandrolone, HU133A


title: DMD Subject 3, post-oxandrolone, HU133B


title: DMD Subject 2, baseline, HU133A


title: DMD Subject 1, post-oxandrolone, HU133B


title: DMD Subject 3, baseline, HU133B


title: DMD Subject 2, baseline, HU133B


title: N16961.1

status: Public on Oct 14 2004

first: James

last: Kaper

department: Center for Vaccine Development

institute: University of Maryland School of Medicine

description:
Human intestinal epithelial cell line T84 maintained in Dulbecco modified Eagle medium wiht F-12 nutrient mixture(DMEM/F-12)(gIBCO BRL Life Technologies) supplemented with 10% heat inactivated fetal bovin serum(FBS) and antibiotic-antimcotic solution(Gibco BRL Life Technologies) at 37 degrees C in an atmosphere of 5% CO2.
Cells were infected with V. Cholerae strain N16961 O1 El Tor, Inaba; wild type
Keywords = intestinal epithelial cells, V. Cholerae

source_name: Intestinal Epithelial cell line

source_name: Infected with V. Cholerae


title: JBK70.3

description:
Human intestinal epithelial cell line T84 maintained in Dulbecco modified Eagle medium wiht F-12 nutrient mixture(DMEM/F-12)(gIBCO BRL Life Technologies) supplemented with 10% heat inactivated fetal bovin serum(FBS) and antibiotic-antimcotic solution(Gibco BRL Life Technologies) at 37 degrees C in an atmosphere of 5% CO2.
Cells were infected with V. Cholerae strain JBK70 N16961 delta ctxAB
Keywords = intestinal epithelial cells, V. Cholerae


title: DMD Subject 1, baseline, HU133A


title: DMD Subject 1, baseline, HU133B


title: CVD112.3

description:
Human intestinal epithelial cell line T84 maintained in Dulbecco modified Eagle medium wiht F-12 nutrient mixture(DMEM/F-12)(gIBCO BRL Life Technologies) supplemented with 10% heat inactivated fetal bovin serum(FBS) and antibiotic-antimcotic solution(Gibco BRL Life Technologies) at 37 degrees C in an atmosphere of 5% CO2.
Cells were infected with V. Cholerae strain CVD112 O139; delta ctxA delta zot delta ace hylA::mer
Keywords = intestinal epithelial cells, V. Cholerae


title: JBK70.1


title: N16961.2

description:
Human intestinal epithelial cell line T84 maintained in Dulbecco modified Eagle medium wiht F-12 nutrient mixture(DMEM/F-12)(gIBCO BRL Life Technologies) supplemented with 10% heat inactivated fetal bovin serum(FBS) and antibiotic-antimcotic solution(Gibco BRL Life Technologies) at 37 degrees C in an atmosphere of 5% CO2.
Cells were infected with V. Cholerae strain N16961.3  O1 O1 Inaba wild type
Keywords = intestinal epithelial cells, V. Cholerae


title: CVD112.1


title: 395.3

description:
Human intestinal epithelial cell line T84 maintained in Dulbecco modified Eagle medium wiht F-12 nutrient mixture(DMEM/F-12)(gIBCO BRL Life Technologies) supplemented with 10% heat inactivated fetal bovin serum(FBS) and antibiotic-antimcotic solution(Gibco BRL Life Technologies) at 37 degrees C in an atmosphere of 5% CO2.
Cells were infected with V. Cholerae strain 395  O1 classical Ogawa; wild type
Keywords = intestinal epithelial cells, V. Cholerae


title: CVD101.3

description:
Human intestinal epithelial cell line T84 maintained in Dulbecco modified Eagle medium wiht F-12 nutrient mixture(DMEM/F-12)(gIBCO BRL Life Technologies) supplemented with 10% heat inactivated fetal bovin serum(FBS) and antibiotic-antimcotic solution(Gibco BRL Life Technologies) at 37 degrees C in an atmosphere of 5% CO2.
Cells were infected with V. Cholerae strain CVD101  395 delta ctxA
Keywords = intestinal epithelial cells, V. Cholerae


title: CVD110.3

description:
Human intestinal epithelial cell line T84 maintained in Dulbecco modified Eagle medium wiht F-12 nutrient mixture(DMEM/F-12)(gIBCO BRL Life Technologies) supplemented with 10% heat inactivated fetal bovin serum(FBS) and antibiotic-antimcotic solution(Gibco BRL Life Technologies) at 37 degrees C in an atmosphere of 5% CO2.
Cells were infected with V. Cholerae strain CVD110 O1 El Tor, Ogawa; delta ctxA delta zot delta ace hylA::mer
Keywords = intestinal epithelial cells, V. Cholerae


title: CVD103-HgR.2

description:
Human intestinal epithelial cell line T84 maintained in Dulbecco modified Eagle medium wiht F-12 nutrient mixture(DMEM/F-12)(gIBCO BRL Life Technologies) supplemented with 10% heat inactivated fetal bovin serum(FBS) and antibiotic-antimcotic solution(Gibco BRL Life Technologies) at 37 degrees C in an atmosphere of 5% CO2.
Cells were infected with V. Cholerae strain CVD103-HgR  O1 classical Inaba; delta ctxA hylA::mer
Keywords = intestinal epithelial cells, V. Cholerae


title: CVD103-HgR.1


title: CVD103-HgR.3


title: CVD101.1


title: JBK70.2


title: 395.2

description:
Human intestinal epithelial cell line T84 maintained in Dulbecco modified Eagle medium wiht F-12 nutrient mixture(DMEM/F-12)(gIBCO BRL Life Technologies) supplemented with 10% heat inactivated fetal bovin serum(FBS) and antibiotic-antimcotic solution(Gibco BRL Life Technologies) at 37 degrees C in an atmosphere of 5% CO2.
Cells were infected with V. Cholerae strain 395.2  O1 classical Ogawa; wild type
Keywords = intestinal epithelial cells, V. Cholerae


title: N16961.3

description:
Human intestinal epithelial cell line T84 maintained in Dulbecco modified Eagle medium wiht F-12 nutrient mixture(DMEM/F-12)(gIBCO BRL Life Technologies) supplemented with 10% heat inactivated fetal bovin serum(FBS) and antibiotic-antimcotic solution(Gibco BRL Life Technologies) at 37 degrees C in an atmosphere of 5% CO2.
Cells were infected with V. Cholerae strain N16961  O1 Inaba wild type
Keywords = intestinal epithelial cells, V. Cholerae


title: CVD101.2


title: 1074-78.3

description:
Human intestinal epithelial cell line T84 maintained in Dulbecco modified Eagle medium wiht F-12 nutrient mixture(DMEM/F-12)(gIBCO BRL Life Technologies) supplemented with 10% heat inactivated fetal bovin serum(FBS) and antibiotic-antimcotic solution(Gibco BRL Life Technologies) at 37 degrees C in an atmosphere of 5% CO2.
Cells were infected with V. Cholerae strain 1074-78.3  O1 El Tor; nontoxigenix environmental isolate
Keywords = intestinal epithelial cells, V. Cholerae


title: CVD110.1


title: CVD112.2


title: CVD110.2


title: SCT3_blood_3

city: Philadelphia

first: Don

last: Baldwin

state: PA

address: 277 John Morgan, 3620 Hamilton Walk

department: Pathology and Lab Medicine

institute: University of Pennsylvania

description: goat 3, engrafted with human cord blood stem cells, blood replicate 4b

organism: Capra hircus

source_name: blood


title: 395.1


title: 1074-78.1

description:
Human intestinal epithelial cell line T84 maintained in Dulbecco modified Eagle medium wiht F-12 nutrient mixture(DMEM/F-12)(gIBCO BRL Life Technologies) supplemented with 10% heat inactivated fetal bovin serum(FBS) and antibiotic-antimcotic solution(Gibco BRL Life Technologies) at 37 degrees C in an atmosphere of 5% CO2.
Cells were infected with V. Cholerae strain 1074-78  O1 El Tor; nontoxigenix environmental isolate
Keywords = intestinal epithelial cells, V. Cholerae


title: SCT2_liver_4b

description: goat 2, engrafted with human cord blood stem cells, liver replicate 4b

source_name: liver


title: 1074-78.2

description:
Human intestinal epithelial cell line T84 maintained in Dulbecco modified Eagle medium wiht F-12 nutrient mixture(DMEM/F-12)(gIBCO BRL Life Technologies) supplemented with 10% heat inactivated fetal bovin serum(FBS) and antibiotic-antimcotic solution(Gibco BRL Life Technologies) at 37 degrees C in an atmosphere of 5% CO2.
Cells were infected with V. Cholerae strain 1074-78.2  O1 El Tor; nontoxigenix environmental isolate
Keywords = intestinal epithelial cells, V. Cholerae


title: SCT2_blood_2b

description: goat 2, engrafted with human cord blood stem cells, blood replicate 2b


title: SCT2_liver_3a

description: goat 2, engrafted with human cord blood stem cells, liver replicate 3a


title: SCT2_blood_2a

description: goat 2, engrafted with human cord blood stem cells, blood replicate 2a


title: SCT2_liver_4a

description: goat 2, engrafted with human cord blood stem cells, liver replicate 4a


title: SCT1_liver_2a

description: goat 1, engrafted with human cord blood stem cells, liver replicate 2a


title: SCT1_liver_1a

description: goat 1, engrafted with human cord blood stem cells, liver replicate 1a


title: SCT1_blood_1b

description: goat 1, engrafted with human cord blood stem cells, blood replicate 1b


title: SCT1_blood_1a

description: goat 1, engrafted with human cord blood stem cells, blood replicate 1a


title: norm4_liver_4a

description: normal goat 4, liver replicate 4a


title: norm3_blood_2

description: normal goat 3, blood replicate 2


title: norm2_liver_2

description: normal goat 2, liver replicate 2


title: SCT1_blood_1c

description: goat 1, engrafted with human cord blood stem cells, blood replicate 1c


title: norm3_liver_3a

description: normal goat 3, liver replicate 3a


title: E2 E2

city: Sharnbrook

first: Fei Ling

last: Lim

state: Bedfordshire

address: Colworth Science Park

country: United Kingdom

institute: Unilever

description: Three independent replicates of 4 groups of immature (19/20 days of age) Alpk:APfCD-1 mice were treated with arachis oil (AO) vehicle, 2.5ug/kg 17beta-estradiol (E2), 2ug/kg diethylstilbestrol (DES), or 50mg/kg genistein (GEN), via 3 daily subcutaneous injection, and sacrificed 72hr after initial dose.

source_name: uterus


title: E2 E3


title: GEN G3


title: DES D3


title: DES D1


title: GEN G2


title: E2 E1


title: norm1_blood_1

description: normal goat 1, blood replicate 1


title: DES D2


title: GEN G1


title: human4_liver_3a

description: normal human liver


title: norm1_liver_1

description: normal goat 1, liver replicate 1


title: human3_blood_2

description: normal human blood


title: AO C3


title: human5_liver_4a

description: normal human liver


title: SP4 - Replicate 1

description:
Cells were grown to saturation in YPD (YEP + 2% glucose) for 24 hours, diluted into YPA (YEP + 2% potassium acetate) at OD600= 0.3 and grown over night at 30 degree C. The sample was taken 4h after induction.
Keywords = benomyl sporulation saccharomyces microtubule spindle checkpoint


title: AO C2


title: human1_liver_1

description: normal human liver


title: human2_liver_2

description: normal human liver


title: human1_blood_1

description: normal human whole blood


title: RD02D004

status: Public on Oct 12 2004

city: Houston

first: Zhiyong

last: Yang

state: TX

institute: Baylor College of Medicine

description:
Whole heads of Rh1-GAL4/P{UAS-dPABP-FLAG} flie were seperated from bodies using liquid nitrogen freezing and sieve (0.710 mm) seperation.  About 100 seperated whole fly heads were homoginized in 0.5 ml Trizol (Invitrogen). Then 0.1 ml chloroform was added. After vigorous vortexing and centrifugation at 12,000 g for 15 minuntes, 0.28 ml of the aquous phase sample was transfered to a new tube, mixed with 0.25 ml 2-isopropanol, then loaded on a RNeasy column (Qiagen), the RNA sample was further purified by the RNeasy kit. Targets were produced using standard Affymetrix procedures from about 10 ug of total RNA. 10 ug cRNA was used for hybridization.
This sample is whole head sample 4 of Rh1-GAL4/P{UAS-hPABP-FLAG}.
Keywords = Drosophila
Keywords = mRNA tagging
Keywords = photoreceptor cell-specific genes

organism: Drosophila melanogaster

source_name: whole head


title: AO C1


title: RD02D001R

description:
Whole heads of Rh1-GAL4/P{UAS-dPABP-FLAG} flie were seperated from bodies using liquid nitrogen freezing and sieve (0.710 mm) seperation.  About 100 seperated whole fly heads were homoginized in 0.5 ml Trizol (Invitrogen). Then 0.1 ml chloroform was added. After vigorous vortexing and centrifugation at 12,000 g for 15 minuntes, 0.28 ml of the aquous phase sample was transfered to a new tube, mixed with 0.25 ml 2-isopropanol, then loaded on a RNeasy column (Qiagen), the RNA sample was further purified by the RNeasy kit. Targets were produced using standard Affymetrix procedures from about 10 ug of total RNA. 10 ug cRNA was used for hybridization.
This sample is whole head sample 1 of Rh1-GAL4/P{UAS-hPABP-FLAG}.
Keywords = Drosophila
Keywords = mRNA tagging
Keywords = photoreceptor cell-specific genes


title: RD01D012

description:
Whole heads of Canton-S flie were seperated from bodies using liquid nitrogen freezing and sieve (0.710 mm) seperation. About 100 seperated whole fly heads were homoginized in 0.5 ml Trizol (Invitrogen). Then 0.1 ml chloroform was added. After vigorous vortexing and centrifugation at 12,000 g for 15 minuntes, 0.28 ml of the aquous phase sample was transfered to a new tube, mixed with 0.25 ml 2-isopropanol, then loaded on a RNeasy column (Qiagen), the RNA sample was further purified by the RNeasy kit. Targets were produced using standard Affymetrix procedures from about 10 ug of total RNA. 10 ug of cRNA was used for hybridization.
This sample is whole head sample 6 of Canton-S.
Keywords = Drosophila
Keywords = mRNA tagging
Keywords = photoreceptor cell-specific genes


title: RD01D009

description:
Whole heads of Canton-S flie were seperated from bodies using liquid nitrogen freezing and sieve (0.710 mm) seperation. About 100 seperated whole fly heads were homoginized in 0.5 ml Trizol (Invitrogen). Then 0.1 ml chloroform was added. After vigorous vortexing and centrifugation at 12,000 g for 15 minuntes, 0.28 ml of the aquous phase sample was transfered to a new tube, mixed with 0.25 ml 2-isopropanol, then loaded on a RNeasy column (Qiagen), the RNA sample was further purified by the RNeasy kit. Targets were produced using standard Affymetrix procedures from about 10 ug of total RNA. 10 ug of cRNA was used for hybridization.
This sample is whole head sample 3 of Canton-S.
Keywords = Drosophila
Keywords = mRNA tagging
Keywords = photoreceptor cell-specific genes


title: RD02D002

description:
Whole heads of Rh1-GAL4/P{UAS-dPABP-FLAG} flie were seperated from bodies using liquid nitrogen freezing and sieve (0.710 mm) seperation.  About 100 seperated whole fly heads were homoginized in 0.5 ml Trizol (Invitrogen). Then 0.1 ml chloroform was added. After vigorous vortexing and centrifugation at 12,000 g for 15 minuntes, 0.28 ml of the aquous phase sample was transfered to a new tube, mixed with 0.25 ml 2-isopropanol, then loaded on a RNeasy column (Qiagen), the RNA sample was further purified by the RNeasy kit. Targets were produced using standard Affymetrix procedures from about 10 ug of total RNA. 10 ug cRNA was used for hybridization.
This sample is whole head sample 2 of Rh1-GAL4/P{UAS-hPABP-FLAG}.
Keywords = Drosophila
Keywords = mRNA tagging
Keywords = photoreceptor cell-specific genes


title: RD01D011

description:
Whole heads of Canton-S flie were seperated from bodies using liquid nitrogen freezing and sieve (0.710 mm) seperation. About 100 seperated whole fly heads were homoginized in 0.5 ml Trizol (Invitrogen). Then 0.1 ml chloroform was added. After vigorous vortexing and centrifugation at 12,000 g for 15 minuntes, 0.28 ml of the aquous phase sample was transfered to a new tube, mixed with 0.25 ml 2-isopropanol, then loaded on a RNeasy column (Qiagen), the RNA sample was further purified by the RNeasy kit. Targets were produced using standard Affymetrix procedures from about 10 ug of total RNA. 10 ug of cRNA was used for hybridization.
This sample is whole head sample 5 of Canton-S.
Keywords = Drosophila
Keywords = mRNA tagging
Keywords = photoreceptor cell-specific genes


title: RD02D003

description:
Whole heads of Rh1-GAL4/P{UAS-dPABP-FLAG} flie were seperated from bodies using liquid nitrogen freezing and sieve (0.710 mm) seperation.  About 100 seperated whole fly heads were homoginized in 0.5 ml Trizol (Invitrogen). Then 0.1 ml chloroform was added. After vigorous vortexing and centrifugation at 12,000 g for 15 minuntes, 0.28 ml of the aquous phase sample was transfered to a new tube, mixed with 0.25 ml 2-isopropanol, then loaded on a RNeasy column (Qiagen), the RNA sample was further purified by the RNeasy kit. Targets were produced using standard Affymetrix procedures from about 10 ug of total RNA. 10 ug cRNA was used for hybridization.
This sample is whole head sample 3 of Rh1-GAL4/P{UAS-hPABP-FLAG}.
Keywords = Drosophila
Keywords = mRNA tagging
Keywords = photoreceptor cell-specific genes


title: RD01D010

description:
Whole heads of Canton-S flie were seperated from bodies using liquid nitrogen freezing and sieve (0.710 mm) seperation. About 100 seperated whole fly heads were homoginized in 0.5 ml Trizol (Invitrogen). Then 0.1 ml chloroform was added. After vigorous vortexing and centrifugation at 12,000 g for 15 minuntes, 0.28 ml of the aquous phase sample was transfered to a new tube, mixed with 0.25 ml 2-isopropanol, then loaded on a RNeasy column (Qiagen), the RNA sample was further purified by the RNeasy kit. Targets were produced using standard Affymetrix procedures from about 10 ug of total RNA. 10 ug of cRNA was used for hybridization.
This sample is whole head sample 4 of Canton-S.
Keywords = Drosophila
Keywords = mRNA tagging
Keywords = photoreceptor cell-specific genes


title: RD01D007

description:
Whole heads of Canton-S flie were seperated from bodies using liquid nitrogen freezing and sieve (0.710 mm) seperation.  About 100 seperated whole fly heads were homoginized in 0.5 ml Trizol (Invitrogen). Then 0.1 ml chloroform was added. After vigorous vortexing and centrifugation at 12,000 g for 15 minuntes, 0.28 ml of the aquous phase sample was transfered to a new tube, mixed with 0.25 ml 2-isopropanol, then loaded on a RNeasy column (Qiagen), the RNA sample was further purified by the RNeasy kit. Targets were produced using standard Affymetrix procedures from about 10 ug of total RNA. 10 ug of cRNA was used for hybridization.
This sample is whole head sample 1 of Canton-S.
Keywords = Drosophila
Keywords = mRNA tagging
Keywords = photoreceptor cell-specific genes


title: RD01D008

description:
Whole heads of Canton-S flie were seperated from bodies using liquid nitrogen freezing and sieve (0.710 mm) seperation. About 100 seperated whole fly heads were homoginized in 0.5 ml Trizol (Invitrogen). Then 0.1 ml chloroform was added. After vigorous vortexing and centrifugation at 12,000 g for 15 minuntes, 0.28 ml of the aquous phase sample was transfered to a new tube, mixed with 0.25 ml 2-isopropanol, then loaded on a RNeasy column (Qiagen), the RNA sample was further purified by the RNeasy kit. Targets were produced using standard Affymetrix procedures from about 10 ug of total RNA. 10 ug of cRNA was used for hybridization.
This sample is whole head sample 2 of Canton-S.
Keywords = Drosophila
Keywords = mRNA tagging
Keywords = photoreceptor cell-specific genes


title: SBVGA1 2

status: Public on Oct 11 2004

city: Halle (Saale)

middle: Sebastian

last: Staege

state: Sachsen-Anhalt

address: Ernst-Grube-Str. 40

department: Universitätsklinik u. Poliklinik für Kinder- u. Jugendmedizin

country: Germany

description:
Ewing family tumor cell-line A673 (IL-2 transgenic). Experiment 2.
Lot batch =


title: SBVGA3 1

description:
Ewing family tumor cell-line A673 (transfected with empty vector). Experiment 1.
Lot batch =


title: A673 wt 3

description:
Ewing family tumor cell-line A673 (wild-type). Experiment 3.
Lot batch =


title: Rat EOM- R2OL1

first: Murat

middle: T

last: Budak

description:
T7 based amplification of mRNA using RiboAmp OA RNA Amplification kit followed by the affymetrix standard protocol and run on ratRAE230A array set.
http://www.med.upenn.edu/cellbio/faculty/rubinstein/
http://www.uphs.upenn.edu/pmi/members/khurana/lab%20page.htm
Keywords = Extraocular muscle
Keywords = Global layer
Keywords = Orbital layer
Keywords = Microarray
Keywords = Laser Capture microscopy

source_name: Adult rat extraocular muscle orbital layer microdissected using laser


title: A673 wt 2

description:
Ewing family tumor cell-line A673 (wild-type). Experiment 2.
Lot batch =


title: SBVGA3 3

description:
Ewing family tumor cell-line A673 (transfected with empty vector). Experiment 3.
Lot batch =


title: SBVGA3 2

description:
Ewing family tumor cell-line A673 (transfected with empty vector). Experiment 2.
Lot batch =


title: SBVGA1 1

description:
Ewing family tumor cell-line A673 (IL-2 transgenic). Experiment 1.
Lot batch =


title: Rat EOM- R3OL1


title: Rat EOM- R2GL1.1

source_name: Adult Rat extraocular  muscle global layer microdissected using laser


title: Rat EOM- R3GL1.1

source_name: Adult rat extraocular muscle global layer microdissected using laser


title: SBVGA1 3

description:
Ewing family tumor cell-line A673 (IL-2 transgenic). Experiment 3.
Lot batch =


title: Rat EOM- R2OL2.1


title: Testis

status: Public on Oct 09 2004

city: Toronto

first: Tomas

last: Babak

state: ON

address: 112 College St

department: Banting and Best Department of Medical Research

institute: Best Institute

description: Testis

source_name: Testis


title: Rat EOM- R3GL2.1


title: Stomach

description: Stomach

source_name: Stomach


title: A673 wt 1

description:
Ewing family tumor cell-line A673 (wild-type). Experiment 1.
Lot batch =


title: Spleen

description: Spleen

source_name: Spleen


title: Rat EOM- R3OL1.2


title: Mammary Gland

description: Mammary Gland

source_name: Mammary Gland


title: Lung

description: Lung

source_name: Lung


title: Rat EOm- R2GL2.1


title: Liver

description: Liver

source_name: Liver


title: Muscle

description: Muscle

source_name: Muscle


title: Heart

description: Heart

source_name: Heart


title: Intestine

description: Intestine

source_name: Intestine


title: Femur

description: Femur

source_name: Femur


title: 12.5 d Embryo

description: 12.5 d Embryo

source_name: 12.5 d Embryo


title: ES cells

description: ES cells

source_name: ES cells


title: Brain

description: Brain

source_name: Brain


title: 15 d Embryo

description: 15 d Embryo

source_name: 15 d Embryo


title: 9.5 d Placenta

description: 9.5 d Placenta

source_name: 9.5 d Placenta


title: 9.5 d Embryo

description: 9.5 d Embryo

source_name: 9.5 d Embryo


title: SCN2.2 Sample 27 (Exp#3-42 hr)

status: Public on Oct 08 2004

city: College Station

first: Gus

middle: John

last: Menger

department: Anatomy and Neurobiology

institute: Texas A&M Health Science Center

description:
To determine whether immortalized cells derived from the rat SCN (SCN2.2) retain intrinsic rhythm-generating properties characteristic of the SCN, oscillatory properties of the SCN2.2 transcriptome were analyzed and compared to those found in the rat SCN in vivo using rat U34A Affymetrix GeneChips.  SCN2.2 cells were expanded in 6-well plates.  At 6-hour intervals cells from a single plate were harvested and pooled for total RNA extraction.
Keywords = Suprachiasmatic Nucleus / Circadian Pacemaker / Clock / Oscillator / SCN2.2 /.

source_name: SCN2.2 cells (Immortalized from Long-Evans rats)


title: SCN2.2 Sample 19 (Exp#2-42 hr)


title: SCN2.2 Sample 25 (Exp#3-30 hr)


title: SCN2.2 Sample 26 (Exp#3-36 hr)


title: SCN2.2 Sample 24 (Exp#3-24 hr)


title: SCN2.2 Sample 21 (Exp#3-6 hr)


title: SCN2.2 Sample 18 (Exp#2-36 hr)


title: SCN2.2 Sample 22 (Exp#3-12 hr)


title: SCN2.2 Sample 23 (Exp#3-18 hr)


title: SCN2.2 Sample 20 (Exp#3-0 hr)


title: SCN2.2 Sample 11 (Exp#1-42 hr b)

source_name: Immortalized rat SCN (SCN2.2) cells


title: SCN2.2 Sample 14 (Exp#2-12 hr)


title: SCN2.2 Sample 10 (Exp#1-42 hr a)


title: SCN2.2 Sample 17 (Exp#2-30 hr)


title: SCN2.2 Sample 16 (Exp#2-24 hr)


title: SCN2.2 Sample 9 (Exp#1-36 hr)


title: SCN2.2 Sample 15 (Exp#2-18 hr)


title: SCN2.2 Sample 6 (Exp#1-18 hr)


title: SCN2.2 Sample 7 (Exp#1-24 hr)


title: SCN2.2 Sample 12 (Exp#2-0 hr)


title: SCN2.2 Sample 8 (Exp#1-30 hr)


title: SCN2.2 Sample 5 (Exp#1-12 hr b)

description: To determine whether immortalized cells derived from the rat SCN (SCN2.2) retain intrinsic rhythm-generating properties characteristic of the SCN, oscillatory properties of the SCN2.2 transcriptome were analyzed and compared to those found in the rat SCN in vivo using rat U34A Affymetrix GeneChips.  SCN2.2 cells were expanded in 6-well plates.  At 6-hour intervals cells from a single plate were harvested and pooled for total RNA extraction.


title: SCN2.2 Sample 13 (Exp#2-6 hr)


title: SCN2.2 Sample 3 (Exp#1-6 hr)


title: SCN2.2 Sample 1 (Exp#1-0 hr b)


title: SCN2.2 Sample 4 (Exp#1-12 hr a)


title: SCN2.2 Sample 1 (Exp#1-0 hr)


title: NIA1020731119

first: Henning

last: Susan

address: 1 Baylor Plaza

description:
Dexamethason treated gut cells
Keywords = Dexamethasone

source_name: reference pool RNA

source_name: treated with dexamethasone


title: NIA1020924131

source_name: reference pool

source_name: Dexamethasone


title: NIA1020731120

source_name: reference

source_name: Dexamethasone treated


title: NIA1020924132

source_name: dexamethasone treated


title: HEK293 stably EWS-FLI1-transfected, BULK

status: Public on Oct 07 2004

first: Christoph

last: Hutter

address: Weinbergweg 22

description: HEK293-cells transfected with EWS-FLI1 type I, G418 selected.


title: HEK293 transiently pIRES2-EGFP-transfected 1

description: HEK293-cells transiently transfected with pIRES2-EGFP, 48 h post transfection, first of two independent transfections


title: HEK293 transiently EWS-FLI1-transfected 2

description: HEK293-cells transiently transfected with EWS-FLI1 type I, 48h post transfection, second of two independent transfections


title: HEK293 stably pIRES2-EGFP-transfected

description: HEK293-cells transfected with pIRES2-EGFP, G418 selected.


title: HEK293 transiently pIRES2-EGFP-transfected 2

description: HEK293-cells transiently transfected with pIRES2-EGFP, 48h post transfection, second of two independent transfections


title: HEK293 stably EWS-FLI1-transfected, clone

description: HEK293-cells transfected with EWS-FLI1 type I, G418 selected, clone F


title: HEK293-control 2

description: wild type HEK293-cells, second of two independent RNA isolations


title: HEK293 transiently EWS-FLI1-transfected 1

description: HEK293-cells transiently transfected with EWS-FLI1 type I, 48h post transfection, first of two independent transfections


title: CHIP-pATF2SP600125-CIS, Array 1

status: Public on Oct 06 2004

type: genomic

city: San Diego

first: Yipeng

last: Wang

institute: Vaccine Research Institute of San Diego

description: CHIP Analysis.

molecule: genomic DNA

source_name: BT474 Genomic DNA

source_name: CHIP Sample: pATF2SP600125-CIS


title: CHIP-pATF2JNKinhibiter-CIS

description: CHIP Analysis.

source_name: CHIP Sample: pATF2JNKinhibitor-CIS


title: CHIP-pCJUNCIS, Array 3

description: CHIP Analysis.

source_name: CHIP Sample: pCJUNCIS


title: CHIP-pcJUNMock, Array 2

description: CHIP Analysis.

source_name: CHIP Sample: pcJUNMock


title: CHIP-pATF2Mock, Array 2

description: CHIP Analysis.

source_name: CHIP Sample: pATF2Mock


title: CHIP-pATF2CIS, Array 3

description: CHIP Analysis.

source_name: CHIP Sample: pATF2CIS


title: CHIP-pcJUNSP600125-CIS, Array 1

description: CHIP Analysis.

source_name: CHIP Sample: pcJUNSP600125-CIS


title: HEK293-control 1

description: wild type HEK293-cells, first of two independent RNA isolations


title: CHIP-pcJUnCTL, Array 3

description: CHIP Analysis.

source_name: CHIP Sample: pcJUnCTL


title: CHIP-pcJunTRANS, Array 2

description: CHIP Analysis.

source_name: CHIP Sample: pcJunTRANS


title: CHIP-pATF2CIS, Array 2

description: CHIP Analysis.


title: CHIP-pATF2CTL, Array 2

description: CHIP Analysis.

source_name: CHIP Sample: pATF2CTL


title: CHIP-pcJUNMock, Array 1

description: CHIP Analysis.


title: CHIP-pcJunCTL, Array 2

description: CHIP Analysis.

source_name: CHIP Sample: pcJunCTL


title: CHIP-pATF2CTL, Array 3

description: CHIP Analysis.


title: CHIP-pcJUNCIS, Array 2

description: CHIP Analysis.

source_name: CHIP Sample: pcJUNCIS


title: CHIP-IgGCIS, Array 2

description: CHIP Analysis.

source_name: CHIP Sample: IgGCIS


title: E2 72hr

description: Immature (19/20 days of age) Alpk:APfCD-1 mice were treated with arachis oil (AO) vehicle, 0.4mg/kg 17beta-estradiol (E2), or 250mg/kg genistein (GEN), via a single subcutaneous injection, and sacrificed at 1hr, 2hr, 4hr, 8hr, 24hr, 48hr, 72hr post dose.

source_name: uterus


title: CHIP-pATF2TRANS, Array 2

description: CHIP Analysis.

source_name: CHIP Sample: pATF2TRANS


title: CHIP-pcJUNJNKinhibitor-CIS, Array 2

description: CHIP Analysis.

source_name: CHIP Sample: pcJUNJNKinhibitor-CIS


title: CHIP-pATF2CTL, Array 1

description: CHIP Analysis.

source_name: BT474 Genomic DNA


title: CHIP-pcJUNCIS, Array 1

description: CHIP Analysis.


title: CHIP-IgGCTL, Array 2

description: CHIP Analysis.

source_name: CHIP Sample: IgGCTL


title: CHIP-pATF2Mock, Array 1

description: CHIP Analysis.


title: CHIP-pATF2CIS, Array 1

description: CHIP Analysis.


title: GEN 72hr


title: AO 72hr


title: GEN 48hr


title: CHIP-pcJunTRANS, Array 1

description: CHIP Analysis.


title: CHIP-pcJunCTL, Array 1

description: CHIP Analysis.


title: Series 3; old; 4 weeks after fracture

city: Charlotte

first: Ralph

middle: A.

last: Meyer

state: NC

department: Orthopaedic Research Laboratory

institute: Carolinas Medical Center

description:
Study of rat femur fracture healing in old rats (52 weeks old at fracture) at 4 weeks after fracture.  RNA from 2 rats was pooled for each array.  Sample is middle third of femur with external callus, cortical bone and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur

source_name: Sprague-Dawley rat diaphyseal femoral fracture callus


title: E2 24hr


title: GEN 24hr


title: Series 3; old; 6 weeks after fracture

description:
Study of rat femur fracture healing in old rats (52 weeks old at fracture) at 6 weeks after fracture.  RNA from 2 rats was pooled for each array.  Sample is middle third of femur with external callus, cortical bone and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: Series 3; old; 2 weeks after fracture

description:
Study of rat femur fracture healing in old rats (52 weeks old at fracture) at 2 weeks after fracture.  RNA from 2 rats was pooled for each array.  Sample is middle third of femur with external callus, cortical bone and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: Series 3; old; 3 days after fracture

description:
Study of rat femur fracture healing in old rats (52 weeks old at fracture) at 3 days after fracture.  RNA from 2 rats was pooled for each array.  Sample is middle third of femur with external callus, cortical bone and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: AO 48hr


title: E2 48hr


title: Series 3; old; 1 week after fracture

description:
Study of rat femur fracture healing in old rats (52 weeks old at fracture) at 1 week after fracture.  RNA from 2 rats was pooled for each array.  Sample is middle third of femur with external callus, cortical bone and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: CHIP-IgGCIS, Array 1

description: CHIP Analysis.


title: E2 8hr


title: CHIP-IgGCTL, Array 1

description: CHIP Analysis.


title: GEN 8hr


title: AO 8hr


title: Series 3; old; no fracture

description:
Study of rat femur fracture healing in old rats (52 weeks old at collection) as intact femur.  RNA from 2 rats was pooled for each array.  Sample is middle third of femur with cortical bone and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur

source_name: Sprague-Dawley rat diaphyseal femur


title: Series 3; adult; 6 weeks after fracture

description:
Study of rat femur fracture healing in adult rats (26 weeks old at fracture) at 6 weeks after fracture.  RNA from 2 rats was pooled for each array.  Sample is middle third of femur with external callus, cortical bone and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: AO 24hr


title: Series 3; adult; 4 weeks after fracture

description:
Study of rat femur fracture healing in adult rats (26 weeks old at fracture) at 4 weeks after fracture.  RNA from 2 rats was pooled for each array.  Sample is middle third of femur with external callus, cortical bone and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: E2 4hr


title: Series 3; adult; 2 weeks after fracture

description:
Study of rat femur fracture healing in adult rats (26 weeks old at fracture) at 2 weeks after fracture.  RNA from 2 rats was pooled for each array.  Sample is middle third of femur with external callus, cortical bone and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: GEN 4hr


title: GEN 2hr


title: Series 3; adult; 1 week after fracture

description:
Study of rat femur fracture healing in adult rats (26 weeks old at fracture) at 1 week after fracture.  RNA from 2 rats was pooled for each array.  Sample is middle third of femur with external callus, cortical bone and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: AO 4hr


title: Series 3; adult; 3 days after fracture

description:
Study of rat femur fracture healing in adult rats (26 weeks old at fracture) at 3 days after fracture.  RNA from 2 rats was pooled for each array.  Sample is middle third of femur with external callus, cortical bone and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: GEN 1hr


title: Series 3; young; 6 weeks after fracture

description:
Study of rat femur fracture healing in young rats (6 weeks old at fracture) at 6 weeks after fracture.  RNA from 2 rats was pooled for each array.  Sample is middle third of femur with external callus, cortical bone and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: Series 3; adult; no fracture control

description:
Study of rat femur fracture healing in adult rats (26 weeks old at collection) as no fracture control.  RNA from 2 rats was pooled for each array.  Sample is middle third of femur with cortical bone and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur

source_name: Sprague-Dawley diaphyseal femur


title: AO 2hr


title: E2 2hr


title: E2 1hr


title: AO 1hr


title: Series 3; young; 2 weeks after fracture

description:
Study of rat femur fracture healing in young rats (6 weeks old at fracture) at 2 weeks after fracture.  RNA from 2 rats was pooled for each array
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: Series 3; young; 4 weeks after fracture

description:
Study of rat femur fracture healing in young rats (6 weeks old at fracture) at 4 weeks after fracture.  RNA from 2 rats was pooled for each array.  Sample is middle third of femur with external callus, cortical bone and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: Series 3; Young; 1 Week after fracture

description:
Study of rat femur fracture healing in young rats (6 weeks old at fracture) at 1 week after fracture.  RNA from 2 rats was pooled for each array
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: busage

type: SAGE

anchor: NlaIII

city: Neuherberg

first: Randolph

middle: B

last: Caldwell

state: Bayern

address: Ingolstaedter Landstrasse 1

department: Institute for Molecular Radiobiology

institute: GSF-National Reseearch Center

description:
This library represents total RNA from bursal tissue of 20 day old CB-inbred chicks
This work was supported by the EU grants 'Genetics in a cell line' and 'Mechanisms of gene integration'
Library constructed in the laboratory of Jean-Marie Buerstedde, M.D.
submitted for publication with the title: Evaluation of the chicken transcriptome by SAGE of B cell and the DT40 cell line
Organ: bursa of Fabricius
Lab host: E. coli
Vector: pZErO-1
Vector type: plasmid
Library treatment: non-normalized
Keywords = chicken transcriptome SAGE Bursal cell DT40
Lot batch =

organism: Gallus gallus

source_name: primary bursal cells


title: Slide 25-29_parasite

status: Public on Oct 05 2004

city: Dunedin

first: Theresa

last: Wilson

address: 710 Cumberland Street

country: New Zealand

institute: AgResearch

description:
RNA from small intestine of parasite resistant and susceptible sheep
Keywords = parasite resistance

organism: Ovis aries

source_name: resistant animal 1032

source_name: susceptible animal 1025


title: Slide 25-31_parasite

source_name: susceptible animal 1017

source_name: resistant animal 1008


title: Slide 25-34_parasite


title: Slide 25-37_parasite

source_name: susceptible animal 1024

source_name: resistant animal 1041


title: Series 3; Young; 3 Days after fracture

description:
Study of rat femur fracture healing in young rats (6 weeks old at fracture) at 3 days after fracture.  RNA from 2 rats was pooled for each array
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: Series 3, young, no fracture

description:
Study of rat femur fracture healing in young rats (6 weeks old at fracture) as no fracture control.  RNA from 2 rats was pooled for each array
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur

source_name: Sprague-Dawley rat diaphyseal femoral callus


title: Slide 25-14_parasite

source_name: resistant animal 1010

source_name: susceptible animal 1004


title: Slide 25-36_parasite


title: Slide 25-33_parasite


title: Slide 25-38_parasite


title: Slide 25-35_parasite


title: Slide 25-28_parasite


title: Slide 25-19_parasite


title: A549 TNF+Stretch Oct 20 2002

status: Public on Oct 03 2004

first: Claudia

middle: Chimisso

last: dos Santos

state: Ontario

address: 200, Elizabeth Street

department: Critical Care

institute: Toronto General Research Institute

description:
A549 a pulmonary alveolar epithelial cell line was used in mechanical stretch and parenchymal cell activation experiments. Cells were grown in flexercell plates coated with collagen I, and allowed to grow O/N. Cells were then exposed to TNF alpha 20ng/ml stimulation + cyclic stretch (20% elongation) for 1hr or 4hrs. Two replicates for each time point were performed. This is the first replicate for the 1hr time point. Experiemnt was carried out Oct 20 2002
Keywords = A549 cells RNA
Keywords = mechanical stretch

source_name: alveolar epithelial cell line exposed to TNF (20ng/ml) and cyclic stretch (20% elongation) for 1hr


title: Slide 25-30_parasite


title: A549 TNF 1hr Jan 31 2003

description:
A549 a pulmonary alveolar epithelial cell line was used in mechanical stretch and parenchymal cell activation experiments. Cells were grown in flexercell plates coated with collagen I, and allowed to grow O/N. Cells were then exposed to TNF alpha 20ng/ml stimulation for 1hr or 4hrs. Two replicates for each time point were performed. This is the second replicate for the 1hr time point. Experiemnt was carried out Jan 31 2003
Keywords = A549 cells RNA
Keywords = mechanical stretch

source_name: alveolar epithelial cell line exposed to TNF stimulation 20 ng/ml for 1hr


title: A549 TNF+Stretch 4hr Jan 31 2003

description:
A549 a pulmonary alveolar epithelial cell line was used in mechanical stretch and parenchymal cell activation experiments. Cells were grown in flexercell plates coated with collagen I, and allowed to grow O/N. Cells were then exposed to TNF alpha 20ng/ml stimulation + cyclic stretch (20% elongation) for 1hr or 4hrs. Two replicates for each time point were performed. This is the second replicate for the 4hr time point. Experiemnt was carried out Jan 31 2003
Keywords = A549 cells RNA
Keywords = mechanical stretch

source_name: alveolar epithelial cells exposed to TNF (20ng/ml) and cyclic stretch (20% elongation) for 4hrs


title: A549 TNF 4hr Nov 21 2002

description:
A549 a pulmonary alveolar epithelial cell line was used in mechanical stretch and parenchymal cell activation experiments. Cells were grown in flexercell plates coated with collagen I, and allowed to grow O/N. Cells were then exposed to TNF alpha 20ng/ml stimulation for 1hr or 4hrs. Two replicates for each time point were performed. This is the first replicate for the 4hr time point. Experiemnt was carried out Nov 21 2002
Keywords = A549 cells RNA
Keywords = mechanical stretch

source_name: alveolar epithelial cell line exposed to TNF 20 ng/ml for 4hrs


title: A549 TNF 1hr Oct 20 2002

description:
A549 a pulmonary alveolar epithelial cell line was used in mechanical stretch and parenchymal cell activation experiments. Cells were grown in flexercell plates coated with collagen I, and allowed to grow O/N. Cells were then exposed to TNF alpha 20ng/ml stimulation for 1hr or 4hrs. Two replicates for each time point were performed. This is the first replicate for the 1hr time point. Experiemnt was carried out Oct 20 2002
Keywords = A549 cells RNA
Keywords = mechanical stretch

source_name: alveolar epithelial cells exposed to TNF 20 ng/ml for 1hr


title: Slide 25-18_parasite


title: A549 stretch 4hr Jan 31 2003

description:
A549 a pulmonary alveolar epithelial cell line was used in mechanical stretch and parenchymal cell activation experiments. Cells were grown in flexercell plates coated with collagen I, and allowed to grow O/N. Cells were then exposed to cyclic stretch - 20% elongation for 1hr or 4hrs. Two replicates for each time point were performed. This is the second replicate for the 4hr time point. Experiemnt was carried out Jan 31 2003
Keywords = A549 cells RNA
Keywords = mechanical stretch

source_name: alveolar epithelial cell line exposed to cyclic stretch 20% elongation for 4hr


title: A549 TNF 4hr Jan 31 2003

description:
A549 a pulmonary alveolar epithelial cell line was used in mechanical stretch and parenchymal cell activation experiments. Cells were grown in flexercell plates coated with collagen I, and allowed to grow O/N. Cells were then exposed to TNF alpha 20ng/ml stimulation for 1hr or 4hrs. Two replicates for each time point were performed. This is the second replicate for the 4hr time point. Experiemnt was carried out Jan 31 2003
Keywords = A549 cells RNA
Keywords = mechanical stretch

source_name: alveolar epithelial cells exposed to TNF 20 ng/ml for 4hrs


title: RNA A549 cells Static Control 4hr Replicate 1

description:
A549 an alveolar epithelial cell line was used in mechanical stretch experiments. Cells were grown in flexercell plates coated with collagen I. This sample represent the static control for the 4 hr sample. This is the first replicate. Experiemnt was carried out Nov 20th 2002
Keywords = A549 cells RNA
Keywords = mechanical stretch

source_name: Alveolar epithelial cell line A549


title: A549 LPS 4hr Nov 21 2002

description:
A549 a pulmonary alveolar epithelial cell line was used in mechanical stretch and parenchymal cell activation experiments. Cells were grown in flexercell plates coated with collagen I, and allowed to grow O/N. Cells were then treated with LPS 1 mcg/ml for 1hr or 4hrs. Two replicates for each time point were performed. This is the first replicate for the 4hr time point. Experiemnt was carried out Nov 21 2002
Keywords = A549 cells RNA
Keywords = mechanical stretch

source_name: alveolar epithelial cell line treated with LPS 1mcg/ml for 4 hr - first replicate


title: Slide 25-32_parasite

source_name: susceptible animal 1025


title: A549 cells Stretch 1hr Oct 20 2002

description:
A549 a pulmonary alveolar epithelial cell line was used in mechanical stretch and parenchymal cell activation experiments. Cells were grown in flexercell plates coated with collagen I, and allowed to grow O/N. Cells were then exposed to cyclic stretch - 20% elongation for 1hr or 4hrs. Two replicates for each time point were performed. This is the first replicate for the 1hr time point. Experiemnt was carried out Oct 20th 2002
Keywords = A549 cells RNA
Keywords = mechanical stretch

source_name: alveolar epithelial cells exposed to cyclic stretch 20% elongation for 1 hr


title: A549 LPS 1hr Oct 21 2002

description:
A549 a pulmonary alveolar epithelial cell line was used in mechanical stretch and parenchymal cell activation experiments. Cells were grown in flexercell plates coated with collagen I, and allowed to grow O/N. Cells were then treated with LPS 1 mcg/ml for 1hr. Two replicates for each time point were performed. This is the first replicate for the 1hr time point. Experiemnt was carried out Oct 21 2002
Keywords = A549 cells RNA
Keywords = mechanical stretch

source_name: alveolar epithelial cells


title: A549 RNA Static Control 4hr Jan 31 2003

description:
A549 an alveolar epithelial cell line was used in mechanical stretch experiments. Cells were grown in flexercell plates coated with collagen I. This sample represent the static control for the 4 hr sample. This is the second replicate.
Keywords = A549 cells RNA
Keywords = mechanical stretch

source_name: A549 alveolar epithelial cell line


title: RNA from A549 Cells - Static Control 1hr Replicate 1

description:
Alveolar Epithelial Cells line A549, were used for mechanical stretch experiments. Cells were grown in Flexercel plates coated with collagen type 1. This sample is the first replicate for the 1 hr static control.
Keywords = A549 RNA static control 1hr
Lot batch = Affymetrix Human Genome Focus Array

source_name: Alveolar epithelial Cell Line A549


title: A549 Stretch 1hr Jan 31 2003

description:
A549 a pulmonary alveolar epithelial cell line was used in mechanical stretch and parenchymal cell activation experiments. Cells were grown in flexercell plates coated with collagen I, and allowed to grow O/N. Cells were then exposed to cyclic stretch - 20% elongation for 1hr or 4hrs. Two replicates for each time point were performed. This is the second replicate for the 1hr time point. Experiemnt was carried out Jan 31 2003
Keywords = A549 cells RNA
Keywords = mechanical stretch

source_name: alveolar epithelial cells exposed to cyclic stretch 20% elongation


title: A549 LPS 1h Jan 31 2003

description:
A549 a pulmonary alveolar epithelial cell line was used in mechanical stretch and parenchymal cell activation experiments. Cells were grown in flexercell plates coated with collagen I, and allowed to grow O/N. Cells were then treated with LPS 1 mcg/ml for 1hr. Two replicates for each time point were performed. This is the second replicate for the 1hr time point. Experiemnt was carried out Jan 31 2003
Keywords = A549 cells RNA
Keywords = mechanical stretch

source_name: Alveolar epithelial cells treated with LPS 1 mcg/ml for 1hr


title: A549 LPS 4hr Jan 31 2003

description:
A549 a pulmonary alveolar epithelial cell line was used in mechanical stretch and parenchymal cell activation experiments. Cells were grown in flexercell plates coated with collagen I, and allowed to grow O/N. Cells were then treated with LPS 1 mcg/ml for 1hr or 4hrs. Two replicates for each time point were performed. This is the second replicate for the 4hr time point. Experiemnt was carried out Jan 31 2003
Keywords = A549 cells RNA
Keywords = mechanical stretch

source_name: alveolar epithelial cells RNA


title: mRNA from A549 Static Control 1hr Jan 31 2003

description:
A549 cells were grown on Flexercell plates - coated with Collagen I. They serve as a static control for mechanical stretch experiments. Cells were seeded ever night and stretched for either 1 or 4 hrs the next day. This sample represents static control for the 1 hr sample its the second of 2 replicates.
Keywords = Alveolar epithelial cells RNA static
Lot batch = Affymetrix Human Genome Focus Array

source_name: A549 cells


title: 6h after HDI

status: Public on Oct 02 2004

city: Temple

first: Joni

last: Ylostalo

address: 5701 Airport Rd., Module C

department: Institute for Regenerative Medicine

institute: Texas A&M

description: pooled C57BL/6J mouse whole lungs 6h after aerosolic HDI (hexamethylene diisocyanate) exposure (10 mg/m3)

source_name: whole lungs


title: A549 TNF+Stretch 1hr Jan 31 2003

description:
A549 a pulmonary alveolar epithelial cell line was used in mechanical stretch and parenchymal cell activation experiments. Cells were grown in flexercell plates coated with collagen I, and allowed to grow O/N. Cells were then exposed to TNF alpha 20ng/ml stimulation + cyclic stretch (20% elongation) for 1hr or 4hrs. Two replicates for each time point were performed. This is the second replicate for the 1hr time point. Experiemnt was carried out Jan 31 2003
Keywords = A549 cells RNA
Keywords = mechanical stretch

source_name: Alveolar epithelial cells exposed to both TNF (20ng/ml) and cyclic stretch (20% elongation) for 1hr


title: 90h after HDI

description: pooled C57BL/6J mouse whole lungs 90h after aerosolic HDI (hexamethylene diisocyanate) exposure (10 mg/m3)


title: Slide 25-15_parasite

description:
RNA from small intestine of parasite resistant and susceptible sheep
Keywords = parasite resistance

source_name: resistant animal 1041

source_name: sususceptible animal 1017


title: 18h after HDI

description: pooled C57BL/6J mouse whole lungs 18h after aerosolic HDI (hexamethylene diisocyanate) exposure (10 mg/m3)


title: A549 Stretch 4hr Nov 21 2002

description:
A549 a pulmonary alveolar epithelial cell line was used in mechanical stretch and parenchymal cell activation experiments. Cells were grown in flexercell plates coated with collagen I, and allowed to grow O/N. Cells were then exposed to cyclic stretch - 20% elongation for 1hr or 4hrs. Two replicates for each time point were performed. This is the first replicate for the 4hr time point. Experiemnt was carried out Nov 21 2002
Keywords = A549 cells RNA
Keywords = mechanical stretch

source_name: A549 cells exposed to cyclic stretch 20% elongation for a total of 4hrs experiemnt performed on Nov 21 2002


title: 0h after HDI

description: pooled unexposed C57BL/6J mouse whole lungs

source_name: whole lung


title: A549 TNF+Stretch 4hr Nov 21 2002

description:
A549 a pulmonary alveolar epithelial cell line was used in mechanical stretch and parenchymal cell activation experiments. Cells were grown in flexercell plates coated with collagen I, and allowed to grow O/N. Cells were then exposed to TNF alpha 20ng/ml stimulation + cyclic stretch (20% elongation) for 1hr or 4hrs. Two replicates for each time point were performed. This is the First replicate for the 4hr time point. Experiemnt was carried out Nov 21 2002
Keywords = A549 cells RNA
Keywords = mechanical stretch

source_name: alveolar epithelial cells exposed to TNF (20ng/ml) and cyclic stretch (20% elongation) for 4hrs


title: Slide 25-17_parasite

source_name: susceptible animal 1017

source_name: resistant animal 1010


title: CHIP-pATF2TRANS, Array 1

description: CHIP Analysis.

source_name: BT474 Genomic DNA

source_name: CHIP Sample: pATF2TRANS


title: GEIM133-U133A-Norm

status: Public on Oct 01 2004

city: Boston

first: Steven

middle: Alan

last: Greenberg

state: MA

address: 75 Francis Street

department: Neurology

institute: Brigham and Women's Hospital

description:
Muscle biopsy specimen from a patient without a neuromuscular disorder (Normal)
Keywords = Inflammatory myopathy, Dermatomyositis, Inclusion body myositis, Polymyositis, MxA, plasmacytoid dendritic cells, Innate immunity, Interferon-alpha

source_name: muscle


title: GEIM186-U133A-Norm


title: GEIM193-U133A-Norm


title: CEA_SGF:AFS010

city: Evry

first: Geneviève

last: Piétu

address: 2, rue Gaston Crémieux

department: DSV/DRR

country: France

institute: CEA

description: RNA sample from MP cell population isolated from the C2C12 cells was labeled in Cy5 and hybridized against RNA sample from SP cell isolated from the C2C12 cells labeled in Cy3.

source_name: MP cell population isolated by Hoechst staining and flow cytometry from C2C12 cells

source_name: SP cell population isolated by Hoechst staining and flow cytometry from C2C12 cells


title: GEIM110-U133A-Norm


title: CEA_SGF:AFS006

description: RNA sample from MP cell population isolated from the C2C12 cells transduced by FGF6 was labeled in Cy5 and hybridized against RNA sample from SP cell isolated from the C2C12 cells transduced by FGF6 labeled in Cy3.

source_name: MP cell population isolated by Hoechst staining and flow cytometry from C2C12 cells transduced by FGF6

source_name: SP cell population isolated by Hoechst staining and flow cytometry from C2C12 cells transduced by FGF6


title: CEA_SGF:AFS025


title: GEIM63-U133A-Norm


title: GEIM50-U133A-Norm


title: CEA_SGF:AFS009

description: RNA sample from SP cell population isolated from the C2C12 cells was labeled in Cy5 and hybridized against RNA sample from MP cell isolated from the C2C12 cells transduced by FGF6 labeled in Cy3.


title: CEA_SGF:AFS023

description: RNA sample from SP cell population isolated from the C2C12 cells was labeled in Cy5 and hybridized against RNA sample from SP cell isolated from the C2C12 cells transduced by FGF6 labeled in Cy3.


title: CEA_SGF:AGR030

description: RNA sample from MP cell population isolated from the C2C12 cells was labeled in Cy5 and hybridized against RNA sample from SP cell isolated from the C2C12 cells transduced by FGF6 labeled in Cy3.


title: CEA_SGF:AFS012


title: CEA_SGF:AFS024

description: RNA sample from MP cell population isolated from the C2C12 cells was labeled in Cy5 and hybridized against RNA sample from MP cell isolated from the C2C12 cells transduced by FGF6 labeled in Cy3.


title: CEA_SGF:AFS008


title: GEIM57-U133A-Norm


title: GEIM128-U133A-Norm


title: CEA_SGF:AFS014

description: RNA sample from SP cell population isolated from the C2C12 cells transduced by FGF6 was labeled in Cy5 and hybridized against RNA sample from MP cell isolated from the C2C12 cells transduced by FGF6 labeled in Cy3.


title: CEA_SGF:AFS021

description: RNA sample from SP cell population isolated from the C2C12 cells transduced by FGF6 was labeled in Cy5 and hybridized against RNA sample from SP cell isolated from the C2C12 cells labeled in Cy3.


title: GEIM176-U133A-Norm


title: CEA_SGF:AFS018


title: CEA_SGF:AFS015


title: GEIM195-U133A-DM

description:
Muscle biopsy specimen from a patient with dermatomyositis (DM)
Keywords = Inflammatory myopathy, Dermatomyositis, Inclusion body myositis, Polymyositis, MxA, plasmacytoid dendritic cells, Innate immunity, Interferon-alpha


title: CEA_SGF:AGR028

description: RNA sample from SP cell population isolated from the C2C12 cells transduced by FGF6 was labeled in Cy5 and hybridized against RNA sample from MP cell isolated from the C2C12 cells labeled in Cy3.


title: CEA_SGF:AFS020


title: CEA_SGF:AGR031


title: CEA_SGF:AFS007

description: RNA sample from MP cell population isolated from the C2C12 cells transduced by FGF6 was labeled in Cy5 and hybridized against RNA sample from SP cell isolated from the C2C12 cells labeled in Cy3.


title: GEIM177-U133A-DM


title: CEA_SGF:AGR036


title: CEA_SGF:AFS027


title: GEIM179-U133A-DM


title: GEIM168-U133A-DM


title: CEA_SGF:AFS029


title: SLK_2Y16358A

city: Kyoto

first: Tadashi

last: Kadowaki

institute: Kyoto University

description:
Specific pathogen-free male Wistar-Kyoto rats weighing 300 to 350 g (Charles River Japan, Kanagawa, Japan) were used.
Experiments were performed according to institutional guidelines.
GBM antigen for the rats was prepared as described previously(1,2).
Five albino rabbits were immunized subcutaneously with GBM antigen emulsified with Freund's complete adjuvant (Difco Laboratories, Detroit, MI, USA).
A booster was given three times every two weeks using the same antigen.
Four days after the final booster, the rabbits were bled from the carotid artery under anesthesia.
Anti-GBM sera were heat-decomplemented for 30 min at 56 degrees Celsius and absorbed with freshly harvested rat erythrocytes.
Rats were divided into several groups, each of which consisted of 4 to 8 rats.
The rats assigned to the GN groups were injected in the dorsal tail vein with 3 ml/kg of anti-GBM serum diluted ten-fold with saline under ether anesthesia.
The day of the anti-GBM serum injection was defined as day 0.
The rats assigned to the control groups were injected intravenously with the same volume of non-immune rabbit control serum, for comparison with the anti-GBM GN rats.
The general condition and body weight of the rats was observed over the course of the experiments.
Prednisolone (Shionogi Pharmaceutical, Osaka, Japan) was administered orally at 1 mg/kg body weight twice a day from day 14 of anti-GBM serum injection until sacrifice.
References
1. Yamada, M., Sasaki, R., Sato, N., Suzuki, M., Tamura, M., Matsushita, T., Kurumatani, H.Amelioration by beraprost sodium, a prostacyclin analogue, of established renal dysfunction in rat glomerulonephritis model. Eur. J. Pharmacol. 449, 167-176 (2002).
2. Krakower, C.A., Nicholes, B.K., Greenspon, S.A. Proteinuria and the fragility of normal and diseased glomerular basement membrane. Proc. Soc. Exp. Biol. Med. 159, 324-334 (1978).

source_name: GBM

source_name: GBM+Predonisolone


title: SLK_2Y16363B


title: CEA_SGF:AFS030


title: GEIM30-U133A-DM


title: CEA_SGF:AFS028

description: RNA sample from SP cell population isolated from the C2C12 cells was labeled in Cy5 and hybridized against RNA sample from MP cell isolated from the C2C12 cells labeled in Cy3.


title: CEA_SGF:AGR033


title: GEIM58-U133A-DM


title: CEA_SGF:AGR029

description: RNA sample from MP cell population isolated from the C2C12 cells transduced by FGF6 was labeled in Cy5 and hybridized against RNA sample from MP cell isolated from the C2C12 cells labeled in Cy3.


title: GEIM87-U133A-DM


title: GEIM86-U133A-DM


title: GEIM39-U133A-DM


title: CEA_SGF:AGR027


title: CEA_SGF:AFS013


title: SLK_2Y16325A


title: CEA_SGF:AGR037


title: SLK_2Y16257B

description:
Specific pathogen-free male Wistar-Kyoto rats weighing 300 to 350 g (Charles River Japan, Kanagawa, Japan) were used.
Experiments were performed according to institutional guidelines.
GBM antigen for the rats was prepared as described previously(1,2).
Five albino rabbits were immunized subcutaneously with GBM antigen emulsified with Freund's complete adjuvant (Difco Laboratories, Detroit, MI, USA).
A booster was given three times every two weeks using the same antigen.
Four days after the final booster, the rabbits were bled from the carotid artery under anesthesia.
Anti-GBM sera were heat-decomplemented for 30 min at 56 degrees Celsius and absorbed with freshly harvested rat erythrocytes.
Rats were divided into several groups, each of which consisted of 4 to 8 rats.
The rats assigned to the GN groups were injected in the dorsal tail vein with 3 ml/kg of anti-GBM serum diluted ten-fold with saline under ether anesthesia.
The day of the anti-GBM serum injection was defined as day 0.
The rats assigned to the control groups were injected intravenously with the same volume of non-immune rabbit control serum, for comparison with the anti-GBM GN rats.
The general condition and body weight of the rats was observed over the course of the experiments.
References
1. Yamada, M., Sasaki, R., Sato, N., Suzuki, M., Tamura, M., Matsushita, T., Kurumatani, H.Amelioration by beraprost sodium, a prostacyclin analogue, of established renal dysfunction in rat glomerulonephritis model. Eur. J. Pharmacol. 449, 167-176 (2002).
2. Krakower, C.A., Nicholes, B.K., Greenspon, S.A. Proteinuria and the fragility of normal and diseased glomerular basement membrane. Proc. Soc. Exp. Biol. Med. 159, 324-334 (1978).

source_name: Control


title: CEA_SGF:AGR034


title: CEA_SGF:AFS003


title: GEIM19-U133A-DM


title: SLK_2Y16358B


title: CEA_SGF:AFS031


title: CEA_SGF:AFS016


title: CEA_SGF:AGR035


title: GEIM12-U133A-DM


title: HUR wt R7 5

status: Public on Sep 30 2004

city: Bern

last: Däpp

department: Functional Anatomy

institute: University of Bern

description: Reloaded mouse; RNA was isolated from cryosections using RNeasy kit (Qiagen). 3 microgram total RNA was subjected to microarray analysis

source_name: C57Bl/6 mouse soleus muscle


title: HUR wt R7 6


title: HUR wt R7 4


title: HUR wt R1 3


title: HUR wt R1 4


title: HUR wt R1 5


title: HUR wt R7 1


title: HUR wt R1 6


title: HUR wt R7 3


title: GEIM4-U133A-DM


title: GEIM45-U133A-Norm

description:
Muscle biopsy specimen from a patient without a neuromuscular disorder (Normal)
Keywords = Inflammatory myopathy, Dermatomyositis, Inclusion body myositis, Polymyositis, MxA, plasmacytoid dendritic cells, Innate immunity, Interferon-alpha


title: SLK_2Y16257A


title: DA#124 U34A

city: Toledo

first: Justin

last: Ways

address: 3035 Arlington Ave.

department: Physiology and Cardiovascular Genomics

institute: Medical College of Ohio

description:
RNA was extracted from the left ventricle of the heart, taken from a single 15 week old inbred rat that was maintained under specific pathogen free conditions. Target cRNA was prepared using the Enzo Bioarray High Yield RNA Transcript Labeling Kit (Enzo Diagnostics, Farmingdale, NY), purified on a column (Rneasy mini kit, Qiagen), and hybridized to commercially available Affymetrix rat GeneChips arrays according to protocols recommended by the manufacturers. Data was analyzed using the GeneChip Expression Analysis Software (Affymetrix).
Keywords = quantitative real-time RT-PCR
Keywords = insulin receptor substrate 2 (Irs2)
Keywords = phosphatidylinositol 3-kinase
Keywords = regulatory subunit 1
Keywords = (Pik3r1)
Keywords = endurance running
Keywords = treadmill running

source_name: Heart, Left Ventricle


title: SLK_2Y16336A


title: CEA_SGF:AGR032

description: RNA sample from MP cell population isolated from the C2C12 cells was labeled in Cy5 and hybridized against RNA sample from SP cell isolated from the C2C12 cells labeled in Cy3.


title: HUR wt R1 2


title: CEA_SGF:AFS022

description: RNA sample from SP cell population isolated from the C2C12 cells was labeled in Cy5 and hybridized against RNA sample from MP cell isolated from the C2C12 cells transduced by FGF6 labeled in Cy3.


title: HUR wt R1 1


title: CEA_SGF:AFS026


title: DA#160 U34A


title: DA#57 U34A


title: HUR wt HS7 6

description: Hindlimb suspended mouse; RNA was isolated from cryosections using RNeasy kit (Qiagen). 3 microgram total RNA was subjected to microarray analysis


title: HUR wt HS7 4


title: HUR wt HS7 3


title: HUR wt HS7 5


title: HUR wt HS7 1


title: HUR wt Control 6

description: Control mouse; RNA was isolated from cryosections using RNeasy kit (Qiagen). 3 microgram total RNA was subjected to microarray analysis


title: F1#159 U34A


title: HUR wt HS7 2


title: HUR wt Control 5


title: DA#56 U34A


title: HUR wt Control 2


title: HUR wt Control 3


title: HUR wt Control 4


title: F1#68 U34A


title: F1#69 U34A


title: HUR wt Control 1


title: COP#90 U34A


title: DA#124 U34C


title: COP#123 U34A


title: COP#74 U34A


title: COP#122 U34A


title: F1#67 U34A


title: DA#124 U34B


title: DA#160 U34C


title: DA#160 U34B


title: DA#57 U34C


title: DA#57 U34B


title: DC diff d10+TNF

city: Aachen

first: Thomas

last: Hieronymus

address: Pauwelsstr. 30

department: Institute for Biomedical Engineering - Cell Biology

institute: University Medical School, RWTH Aachen

description:
RNA preparation, labelling, and hybridization as described in Hacker et al 2003 Nat. Immunol.4:380

differentiation of DC for 10 days plus TNFalpha stimulation for 16h from in vitro amplified DC progenitor

source_name: Dendritic cells (DC) differentiated from DC progenitor from bone marrow


title: DA#56 U34B


title: DA#56 U34C


title: DC diff d10

description: RNA preparation, labelling, and hybridization as described in Hacker et al 2003 Nat. Immunol.4:380


title: F1#159 U34C


title: DC diff d7


title: F1#69 U34B


title: F1#69 U34C


title: F1#67 U34B


title: F1#159 U34B


title: COP#123 U34B


title: F1#68 U34C


title: COP#123 U34C


title: F1#67 U34C


title: F1#68 U34B


title: Lin-c-kit+Sca1+ hematopoetic stem cells-sample2

description:
RNA preparation, labelling, and hybridization as described in Hacker et al 2003 Nat. Immunol.4:380
with two rounds of amplification

source_name: sorted hematopoetic stem cells from bone marrow


title: DNAVACCINE6

city: Stockholm

first: Anna

last: Lobell

address: CMM, L8:04, Karolinska Hospital

department: Clinical Neuroscience

country: Sweden

institute: Karolinska Institute

description:
Total RNA from spleens of rats during peak of clinical signs of EAE.
VALUE not reported for flagged spots.

source_name: pMOG91-108 vaccinated rat No 5

source_name: Control rat No 6


title: FLT3+/CD11b+ Dendritic cell (DC) progenitor-sample4

source_name: DC progenitor from bone marrow


title: FLT3+/CD11b+ Dendritic cell (DC) progenitor-sample5


title: Lin-c-kit+Sca1+ hematopoetic stem cells-sample1


title: DNAVACCINE2

source_name: Control rat No2

source_name: pMOG91-108 vaccinated rat No1


title: DNAVACCINE3

source_name: pMOG91-108 vaccinated rat No 3

source_name: Control rat No 4


title: COP#122 U34B


title: DNAVACCINE4


title: COP#90 U34B


title: COP#122 U34C


title: DNAVACCINE1

source_name: pMOG91-108 vaccinated rat no1

source_name: Control rat no2


title: COP#90 U34C


title: FLT3+/CD11b+ Dendritic cell (DC) progenitor-sample3


title: FLT3+/CD11b+ Dendritic cell (DC) progenitor-sample2


title: COP#74 U34C


title: FLT3+/CD11b+ Dendritic cell (DC) progenitor-sample1


title: COP#74 U34B


title: Fetal Liver HSC 1

status: Public on Sep 28 2004

first: Margaret

middle: A

last: Goodell

address: One Baylor Plaza, N1030

department: Center for Cell and Gene Therapy

description:
Sca+/Kit+/AA4.1+/Lin- HSC were isolated from the livers of 12.5-14.5 day old embryos.  RNA was isolated from 50,000-100,000 FACS sorted cells and subjected to two round of T7 based linear amplification using Ambion's Message Amp kit.  Two replicates were analyzed.
Keywords = HSC
Keywords = proliferation
Keywords = fetal liver

source_name: Sca+/Kit+/AA4.1+/Lin- HSC from 12.5-14.5 dpc fetal liver


title: Fetal Liver HSC 2


title: day 30 5-FU HSC 1

description:
HSC (Sca+ SP) were isolated from 8-12 week C57B6 mice at various time points after treatment with 5-Fluorouracil.  RNA was isolated from 50,000-100,000 FACS sorted cells and subjected to two round of T7 based linear amplification using Ambion's Message Amp kit.  Two replicates from each time point were analyzed.
Keywords = HSC
Keywords = proliferation
Keywords = 5-FU

source_name: Sca+ SP (side population) bone marrow cells


title: day 10 5-FU HSC 2


title: day 30 5-FU HSC 2


title: day 10 5-FU HSC 1


title: day 6 5-FU HSC 2


title: day 6 5-FU HSC 1


title: DNAVACCINE5


title: prp22-1 cells, time 30min

status: Public on Sep 25 2004

city: Bangalore

first: Aparna

middle: Katoch

last: Sapra

state: Karnataka

address: C.V. Raman Avenue

department: Microbiology and Cell Biology

country: India

institute: Indian Institute of Science

description: prp22-1 cells at 37C 30min

source_name: prp22-1, 30min CH1 Cy5

source_name: yeast genomic DNA CH2 Cy3


title: day 3 5-FU HSC 2

city: Houston

institute: Baylor College of Medicine


title: prp22-1 cells, time 15min

description: prp22-1 cells at 37C 15min

source_name: prp22-1, 15min CH1 Cy5


title: prp22-1 cells, time 0 hours

description: prp22-1 cells at 23C prior to temperature shift

source_name: prp22-1, 0 hours CH1 Cy5


title: prp22-1 cells, time 120min

description: prp22-1 cells at 37C 120min

source_name: prp22-1, 120min CH1 Cy5


title: prp22-1 cells, time 5min

description: prp22-1 cells at 37C 5min

source_name: prp22-1, 5min CH1 Cy5


title: prp17-1 cells, time 120min

description: prp17-1 cells at 37C 120min

source_name: prp17-1, 120min CH1 Cy5


title: prp22-1 cells, time 60min

description: prp22-1 cells at 37C 60min

source_name: prp22-1, 60min CH1 Cy5


title: day 1 5-FU HSC 2


title: prp17-1 cells, time 60min

description: prp17-1 cells at 37C 60min

source_name: prp17-1, 60min CH1 Cy5


title: prp17-1 cells, time 30min

description: prp17-1 cells at 37C 30min

source_name: prp17-1, 30min CH1 Cy5


title: day 3 5-FU HSC 1


title: adult HSC 1 (untreated)


title: day 1 5-FU HSC 1


title: day 2 5-FU HSC 1


title: adult HSC 2 (untreated)


title: GEIM9-U133A-DM

description:
Muscle biopsy specimen from a patient with dermatomyositis (DM)
Keywords = Inflammatory myopathy, Dermatomyositis, Inclusion body myositis, Polymyositis, MxA, plasmacytoid dendritic cells, Innate immunity, Interferon-alpha

source_name: muscle


title: day 2 5-FU HSC 2


title: prp17-1 cells, time 15min

description: prp17-1 cells at 37C 15min

source_name: prp17-1, 15min CH1 Cy5


title: prp17 null cells, time 60min

description: prp17 null cells at 37C 60min

source_name: prp17 null, 60min CH1 Cy5


title: prp17-1 cells, time 5min

description: prp17-1 cells at 37C 5min

source_name: prp17-1, 5min CH1 Cy5


title: prp17 null cells, time 30min

description: prp17 null cells at 37C 30min

source_name: prp17 null, 30min CH1 Cy5


title: prp17-1 cells, time 0 hours

description: prp17-1 cells at 23C prior to temperature shift

source_name: prp17-1, 0 hours CH1 Cy5


title: prp17 null cells, time 5min

description: prp17 null cells at 37C 5min

source_name: prp17 null, 5min CH1 Cy5


title: prp17 null cells, time 15min

description: prp17 null cells at 37C 15min

source_name: prp17 null, 15min CH1 Cy5


title: SS330 cells, time 120min

description: SS330 cells at 37C 120min

source_name: SS330, 120min CH1 Cy5

source_name: yeast genomic DNA CH2 Cy3


title: SS330 cells, time 60min

description: SS330 cells at 37C 60min

source_name: SS330, 60min CH1 Cy5


title: prp17 null cells, time 120min

description: prp17 null cells at 37C 120min

source_name: prp17 null, 120min CH1 Cy5


title: prp17 null cells, time 0 hours

description: prp17 null cells at 23C prior to temperature shift

source_name: prp17 null, 0 hours CH1 Cy5


title: SS330 cells, time 15min

description: SS330 cells at 37C 15min

source_name: SS330, 15min CH1 Cy5


title: SS330 cells, time 5min

description: SS330 cells at 37C 5min

source_name: SS330, 5min CH1 Cy5


title: SS330 cells, time 0 hours

description: SS330 cells at 23C prior to temperature shift

source_name: SS330, 0 hours CH1 Cy5


title: SS330 cells, time 30min

description: SS330 cells at 37C 30min

source_name: SS330, 30min CH1 Cy5


title: Dendritic cell (DC) progenitor

description: RNA preparation, labelling and hybridization as described in Hacker et al 2003 Nat. Immunol.4:380

source_name: DC progenitor from bone marrow


title: Neuromedin 12hrs Replicate 4

status: Public on Sep 24 2004

city: Research Triangle Park

first: Sujoy

last: GHOSH

institute: GLAXOSMITHKLINE

description: D10.G4.1 T cells treated with Neuromedin for 12 hrs, replicate 4

source_name: T cells


title: RAPA16

city: La Jolla

first: Sunil

last: Kurian

state: CA

address: 10550 N Torrey Pines Road

department: Molecular and Experimental Medicine

institute: The Scripps Research Institute

description:
BIOPSY FROM A HUMAN KIDNEY WITH A SIROLIMUS (RAPAMYCIN) IMMUNOSUPPRESSIVE REGIMEN
Keywords = CSA
Keywords = SRL
Keywords = DNA MICROARRAYS
Keywords = TRANSPLANT

source_name: HUMAN KIDNEY


title: RAPA10


title: RAPA11


title: RAPA13


title: RAPA12


title: RAPA17


title: RAPA19


title: RAPA09


title: RAPA08


title: RAPA15


title: RAPA18


title: RAPA14


title: Neuromedin 12hrs Replicate 3

description: D10.G4.1 T cells treated with Neuromedin for 12 hrs, replicate 3


title: Neuromedin 12hrs Replicate 1

description: D10.G4.1 T cells treated with Neuromedin for 12 hrs, replicate 1


title: RAPA07


title: Neuromedin 12hrs Replicate 2

description: D10.G4.1 T cells treated with Neuromedin for 12 hrs, replicate 2


title: RAPA05


title: PBS 12hrs Replicate 4

description: D10.G4.1 T cells treated with PBS for 12 hrs, replicate 4


title: PBS 12hrs Replicate 3

description: D10.G4.1 T cells treated with PBS for 12 hrs, replicate 3


title: RAPA06


title: Neuromedin 6 hrs Replicate 4

description: D10.G4.1 T cells treated with Neuromedin for 6 hrs, replicate 4


title: CSA20

description:
BIOPSY FROM A HUMAN KIDNEY WITH A CYCLOSPORINE IMMUNOSUPPRESSIVE REGIMEN
Keywords = CSA
Keywords = SRL
Keywords = DNA MICROARRAYS
Keywords = TRANSPLANT


title: CSA22


title: RAPA02


title: Neuromedin 6 hrs Replicate 3

description: D10.G4.1 T cells treated with Neuromedin for 6 hrs, replicate 3


title: PBS 6hrs Replicate 2

description: D10.G4.1 T cells treated with PBS for 6 hrs, replicate 2


title: RAPA03


title: PBS 12hrs Replicate 1

description: D10.G4.1 T cells treated with PBS for 12 hrs, replicate 1


title: CSA19


title: RARA04


title: Neuromedin 6 hrs Replicate 1

description: D10.G4.1 T cells treated with Neuromedin for 6 hrs, replicate 1


title: Neuromedin 6 hrs Replicate 2

description: D10.G4.1 T cells treated with Neuromedin for 6 hrs, replicate 2


title: PBS 12hrs Replicate 2

description: D10.G4.1 T cells treated with PBS for 12 hrs, replicate 2


title: CSA18


title: RAPA01


title: CSA17


title: PBS 6hrs Replicate 4

description: D10.G4.1 T cells treated with PBS for 6 hrs, replicate 4


title: CSA21


title: PBS 6hrs Replicate 3

description: D10.G4.1 T cells treated with PBS for 6 hrs, replicate 3


title: CSA15


title: PBS 6hrs Replicate 1

description: D10.G4.1 T cells treated with PBS for 6 hrs, replicate 1


title: Neuromedin 3 hrs Replicate 3

description: D10.G4.1 T cells treated with Neuromedin for 3 hrs, replicate 3


title: CSA08


title: Neuromedin 3 hrs Replicate 1

description: D10.G4.1 T cells treated with Neuromedin for 3 hrs, replicate 1


title: CSA12


title: CSA13


title: CSA07


title: CSA14


title: PBS 3hrs Replicate 2

description: D10.G4.1 T cells treated with PBS for 3 hrs, replicate 2


title: Neuromedin 3 hrs Replicate 2

description: D10.G4.1 T cells treated with Neuromedin for 3 hrs, replicate 2


title: PBS 3hrs Replicate 1

description: D10.G4.1 T cells treated with PBS for 3 hrs, replicate 1


title: CSA06


title: CSA10


title: Neuromedin 0.8 hrs Replicate 1

description: D10.G4.1 T cells treated with Neuromedin for 0.8 hrs, replicate 1


title: PBL macrophage E.coli 8hr vs LPS 8hr

city: Newark

first: Calvin

last: Keeler

state: DE

department: Animal and Food Sciences

institute: University of Delaware

description:
This sample set is part of an experiment comparing gene expression between a control, 1hr, 2hr, 4hr, and 8 hour time course following stimulation with either XL10 E. coli or S. typh LPS. The stimuli were removed after 2 hours in the late time points.
Keywords = AMM avian macrophage lps e.coli

source_name: Avian peripheral blood lymphocyte macrophage - stimulated with whole XL10 E. coli for 8 hours

source_name: Avian peripheral blood lymphocyte macrophage - stimulated with LPS from S.typh for 8 hours


title: PBS 3hrs Replicate 4

description: D10.G4.1 T cells treated with PBS for 3 hrs, replicate 4


title: CSA11

description:
BIOPSY FROM A HUMAN KIDNEY WITH A CYCLOSPORINE IMMUNOSUPPRESSIVE REGIMEN
Keywords = CSA
Keywords = SRL
Keywords = DNA MICROARRAYS
Keywords = TRANSPLANT


title: Neuromedin 0.8 hrs Replicate 2

description: D10.G4.1 T cells treated with Neuromedin for 0.8 hrs, replicate 2


title: CSA05


title: CSA04


title: PBS 3hrs Replicate 3

description: D10.G4.1 T cells treated with PBS for 3 hrs, replicate 3


title: CSA09


title: Neuromedin 0.8 hrs Replicate 3

description: D10.G4.1 T cells treated with Neuromedin for 0.8 hrs, replicate 3


title: CSA03


title: PBS 0.8hrs Replicate 4

description: D10.G4.1 T cells treated with PBS for 0.8 hrs, replicate 4


title: Neuromedin 0.8 hrs Replicate 4

description: D10.G4.1 T cells treated with Neuromedin for 0.8 hrs, replicate 4


title: PBL macrophage E.coli 4hr vs LPS 4hr

source_name: Avian peripheral blood lymphocyte macrophage - stimulated with whole XL10 E. coli for 4 hours

source_name: Avian peripheral blood lymphocyte macrophage - stimulated with LPS from S.typh for 4 hours


title: CSA16


title: PBS 0.8hrs Replicate 3

description: D10.G4.1 T cells treated with PBS for 0.8 hrs, replicate 3


title: PBL macrophage LPS 2hr

source_name: Avian peripheral blood lymphocyte macrophage - stimulated with LPS from S.typh for 2 hours


title: PBS 0.8hrs Replicate 2

description: D10.G4.1 T cells treated with PBS for 0.8 hrs, replicate 2


title: CSA01


title: CSA02


title: PBS 0.8hrs Replicate 1

description: D10.G4.1 T cells treated with PBS for 0.8 hrs, replicate 1


title: PBL macrophage Control vs LPS 1hr

source_name: Avian peripheral blood lymphocyte macrophage - unstimulated

source_name: Avian peripheral blood lymphocyte macrophage - stimulated with LPS from S.typh 1 hour


title: STV_F

status: Public on Sep 20 2004

first: Susan

last: Kandarian

department: Department of Health Sciences

institute: Boston University

description:
STARVED MYOTUBES - C2C12 mouse myoblasts (American Type Culture Collection, Manassas, VA) were maintained in growth medium (DMEM supplemented with 10% Fetal Bovine serum, Invitrogen Corporation, Carlsbad, CA) in 5% CO2.  Cells were plated at a density of 40-50% in 100mm dishes.  When cells reached ~90% confluency 24 hours later, they were switched to differentiation media (DMEM containing 2% horse serum; GIBCO, Invitrogen Corporation, Carlsbad, CA) which was subsequently changed every 48 hours. All cells were allowed to differentiate for 4 days with feeding every two days (day 0, 2, and 4).  Beginning at day 4, control cells were re-fed every 48 hours whereas experimental cells were not re-fed.  After an additional 4 days (8 days post differentiation), cells were harvested and total RNA was isolated from control and "starved" (non re-fed cells)
Keywords = skeletal muscle
Keywords = atrophy

source_name: C2C12 MYOTUBES STARVED 4 DAYS


title: PBL macrophage control vs E.coli 1hr

source_name: Avian peripheral blood lymphocyte macrophage - stimulated with whole XL10 E. coli for 1 hour


title: PBL macrophage E.coli 2hr vs E.coli 4hr

source_name: Avian peripheral blood lymphocyte macrophage - stimulated with whole XL10 E. coli for 2 hours


title: PKRwt5- (MB)

status: Public on Sep 22 2004

city: Montreal

first: Rob

last: Sladek

state: PQ

address: 740 avenue du Docteur Penfield

institute: Montreal Genome Centre

description: NIH3T3 cells expressing wtPKR (NIH3T3 - PKR) under a tetracycline repressed promoter. Overexpression of PKR wt protein was induced by the withdrawal of tetracycline from the growth media for 5 hours.

source_name: Inducible NIH3T3 stable cell line


title: PKRwt5-


title: S.R(9)x 3A congenic strain- sample 1 of 3

first: Bina

last: Joe

description:
BP QTL study: Comparison of renal gene expression between the Dahl Salt-sensitive (S) rat vs. S.R(9) congenic
Keywords = Blood Pressure
Keywords = Quantitative trait locus
Keywords = QTL
Keywords = hypertension
Keywords = rat
Keywords = congenic
Lot batch = (Tag: 23338)

source_name: kidney


title: Dahl Salt-sensitive (S) rat-sample 3 of 3

description:
BP QTL study: Comparison of renal gene expression between the Dahl Salt-sensitive (S) rat vs. S.R(9) congenic
Keywords = Blood Pressure
Keywords = Quantitative trait locus
Keywords = QTL
Keywords = hypertension
Keywords = rat
Keywords = congenic
Lot batch = (Tag: S7456)


title: S.R (9)x3A congenic strain-sample 3 of 3

description:
BP QTL study: Comparison of renal gene expression between the Dahl Salt-sensitive (S) rat and S.R(9)x3A congenic rat
Keywords = Blood Pressure
Keywords = Quantitative trait locus
Keywords = QTL
Keywords = hypertension
Keywords = rat
Keywords = congenic
Lot batch = (Tag:23340)

source_name: Kidney


title: Dahl Salt -sensitive (S) rat-sample 1 of 3

description:
BP QTL study: Comparison of renal gene expression between the Dahl Salt-sensitive (S) rat vs. S.R(9) congenic
Keywords = Blood Pressure
Keywords = Quantitative trait locus
Keywords = QTL
Keywords = hypertension
Keywords = rat
Keywords = congenic
Lot batch = (Tag: S7454)


title: Dahl salt-sensitive (S) rat_sample 3 of 3

description:
BP QTL study: Comparison of renal gene expression between the Dahl Salt-sensitive (S) rat and S.R(9)x3A congenic rat
Keywords = Blood Pressure
Keywords = Quantitative trait locus
Keywords = QTL
Keywords = hypertension
Keywords = rat
Keywords = congenic
Lot batch = (Tag:S7456)


title: Dahl salt-sensitive (S) rat-sample 2 of 3

description:
BP QTL study: Comparison of renal gene expression between the Dahl Salt-sensitive (S) rat vs. S.R(9) congenic
Keywords = Blood Pressure
Keywords = Quantitative trait locus
Keywords = QTL
Keywords = hypertension
Keywords = rat
Keywords = congenic
Lot batch = (Tag: S7455)