title: treatment=AP time=6 (hrs) AP2-6hr

description:
Polymorphonuclear (PMN) leukocytes were obtained from healthy individuals.  "time" indicates time at which transcript levels were analyzed (hours). "treatment" indicates whether the polymorphonuclear leukocytes were untreated (ctrl) or treated with Anaplasma phagocytophilum (AP), Staphylococcus aureus (SA), HL60 cell lysate (uninf), heat-killed Anaplasma phagocytophilum (hkAP), or heat-killed HL60 cell lysate (hklys).
Sample_descripton: Sample_PMN_treatment = AP
Sample_descripton: Sample_time = 6
Sample_descripton: Affymetrix MAS version = MAS5
Sample_descripton: GeneSpring (version 6.0)normalization protocol:
Sample_descripton: 1.  Data Transformation:  Set measurements less than 0.0 to 0.0
Sample_descripton: 2.  Per Chip:  Normalize to a constant value of 150.0 (MAS scaling factor)
Sample_descripton: 3.  Per Gene:  Normalize to median
Keywords = NEUTROPHIL RESPONSE TO ANAPLASMA PHAGOCYTOPHILUM


title: treatment=AP time=6 (hrs) AP1-6hr

status: Public on May 15 2005

type: RNA

city: Hamilton

first: Frank

middle: R.

last: DeLeo

state: MT

address: 903 South 4th Street

department: Laboratory of Human Bacterial Pathogenesis

country: USA

institute: National Institute of Allergy and Infectious Diseases

molecule: total RNA

organism: Homo sapiens

source_name: Human polymorphonuclear (PMN) leukocytes


title: treatment=AP time=3 (hrs) AP1-3hr

description:
Polymorphonuclear (PMN) leukocytes were obtained from healthy individuals.  "time" indicates time at which transcript levels were analyzed (hours). "treatment" indicates whether the polymorphonuclear leukocytes were untreated (ctrl) or treated with Anaplasma phagocytophilum (AP), Staphylococcus aureus (SA), HL60 cell lysate (uninf), heat-killed Anaplasma phagocytophilum (hkAP), or heat-killed HL60 cell lysate (hklys).
Sample_descripton: Sample_PMN_treatment = AP
Sample_descripton: Sample_time = 3
Sample_descripton: Affymetrix MAS version = MAS5
Sample_descripton: GeneSpring (version 6.0)normalization protocol:
Sample_descripton: 1.  Data Transformation:  Set measurements less than 0.0 to 0.0
Sample_descripton: 2.  Per Chip:  Normalize to a constant value of 150.0 (MAS scaling factor)
Sample_descripton: 3.  Per Gene:  Normalize to median
Keywords = NEUTROPHIL RESPONSE TO ANAPLASMA PHAGOCYTOPHILUM


title: treatment=AP time=24 (hrs) AP2-24hr

description:
Polymorphonuclear (PMN) leukocytes were obtained from healthy individuals.  "time" indicates time at which transcript levels were analyzed (hours). "treatment" indicates whether the polymorphonuclear leukocytes were untreated (ctrl) or treated with Anaplasma phagocytophilum (AP), Staphylococcus aureus (SA), HL60 cell lysate (uninf), heat-killed Anaplasma phagocytophilum (hkAP), or heat-killed HL60 cell lysate (hklys).
Sample_descripton: Sample_PMN_treatment = AP
Sample_descripton: Sample_time = 24
Sample_descripton: Affymetrix MAS version = MAS5
Sample_descripton: GeneSpring (version 6.0)normalization protocol:
Sample_descripton: 1.  Data Transformation:  Set measurements less than 0.0 to 0.0
Sample_descripton: 2.  Per Chip:  Normalize to a constant value of 150.0 (MAS scaling factor)
Sample_descripton: 3.  Per Gene:  Normalize to median
Keywords = NEUTROPHIL RESPONSE TO ANAPLASMA PHAGOCYTOPHILUM


title: treatment=AP time=1.5 (hrs) AP1-1.5hr

description:
Polymorphonuclear (PMN) leukocytes were obtained from healthy individuals.  "time" indicates time at which transcript levels were analyzed (hours). "treatment" indicates whether the polymorphonuclear leukocytes were untreated (ctrl) or treated with Anaplasma phagocytophilum (AP), Staphylococcus aureus (SA), HL60 cell lysate (uninf), heat-killed Anaplasma phagocytophilum (hkAP), or heat-killed HL60 cell lysate (hklys).
Sample_descripton: Sample_PMN_treatment = AP
Sample_descripton: Sample_time = 1.5
Sample_descripton: Affymetrix MAS version = MAS5
Sample_descripton: GeneSpring (version 6.0)normalization protocol:
Sample_descripton: 1.  Data Transformation:  Set measurements less than 0.0 to 0.0
Sample_descripton: 2.  Per Chip:  Normalize to a constant value of 150.0 (MAS scaling factor)
Sample_descripton: 3.  Per Gene:  Normalize to median
Keywords = NEUTROPHIL RESPONSE TO ANAPLASMA PHAGOCYTOPHILUM


title: treatment=AP time=0 (hrs) AP2-0hr

description:
Polymorphonuclear (PMN) leukocytes were obtained from healthy individuals.  "time" indicates time at which transcript levels were analyzed (hours). "treatment" indicates whether the polymorphonuclear leukocytes were untreated (ctrl) or treated with Anaplasma phagocytophilum (AP), Staphylococcus aureus (SA), HL60 cell lysate (uninf), heat-killed Anaplasma phagocytophilum (hkAP), or heat-killed HL60 cell lysate (hklys).
Sample_descripton: Sample_PMN_treatment = AP
Sample_descripton: Sample_time = 0
Sample_descripton: Affymetrix MAS version = MAS5
Sample_descripton: GeneSpring (version 6.0)normalization protocol:
Sample_descripton: 1.  Data Transformation:  Set measurements less than 0.0 to 0.0
Sample_descripton: 2.  Per Chip:  Normalize to a constant value of 150.0 (MAS scaling factor)
Sample_descripton: 3.  Per Gene:  Normalize to median
Keywords = NEUTROPHIL RESPONSE TO ANAPLASMA PHAGOCYTOPHILUM


title: treatment=AP time=0 (hrs) AP1-0hr


title: ITME6E7ST_0

city: Madrid

first: Manuel

last: Collado

address: Melchor Fernandez Almagro 3

department: Molecular Oncology

country: Spain

institute: Spanish Cancer Research Center

description: IMR90 hTERT MekER E6/E7 ST


title: ITME6E7_1

description: IMR90 hTERT MekER E6/E7


title: ITMST_0

description: IMR90 hTERT MekER ST

source_name: ITM-ST


title: VDCM 4

status: Public on May 14 2005

city: Camperdown, Sydney

first: Masako

last: Tsubakihara

state: New South Wales, Australia

address: MRU, W103 Anderson Stuart Bldg (F13), Institute for Biomedical Research, University of Sydney

country: Australia

institute: University of Sydney

description: Hybridization of human heart with control (universal RNA)

source_name: VDCM HEART RNA

source_name: Human universal RNA


title: ITMST_1

description: IMR90 hTERT MekER ST


title: ITM_0

description: IMR90 hTERT MekER

source_name: ITM


title: VDCM 1


title: PDCM 5

source_name: PDCM HEART RNA


title: VDCM 3


title: ITM_1

description: IMR90 hTERT MekER


title: treatment=AP time=12 (hrs) AP1-12hr

description:
Polymorphonuclear (PMN) leukocytes were obtained from healthy individuals.  "time" indicates time at which transcript levels were analyzed (hours). "treatment" indicates whether the polymorphonuclear leukocytes were untreated (ctrl) or treated with Anaplasma phagocytophilum (AP), Staphylococcus aureus (SA), HL60 cell lysate (uninf), heat-killed Anaplasma phagocytophilum (hkAP), or heat-killed HL60 cell lysate (hklys).
Sample_descripton: Sample_PMN_treatment = AP
Sample_descripton: Sample_time = 12
Sample_descripton: Affymetrix MAS version = MAS5
Sample_descripton: GeneSpring (version 6.0)normalization protocol:
Sample_descripton: 1.  Data Transformation:  Set measurements less than 0.0 to 0.0
Sample_descripton: 2.  Per Chip:  Normalize to a constant value of 150.0 (MAS scaling factor)
Sample_descripton: 3.  Per Gene:  Normalize to median
Keywords = NEUTROPHIL RESPONSE TO ANAPLASMA PHAGOCYTOPHILUM


title: PDCM 2


title: treatment=hklys time=9 (hrs) hklys3-9hr

description:
Polymorphonuclear (PMN) leukocytes were obtained from healthy individuals.  "time" indicates time at which transcript levels were analyzed (hours). "treatment" indicates whether the polymorphonuclear leukocytes were untreated (ctrl) or treated with Anaplasma phagocytophilum (AP), Staphylococcus aureus (SA), HL60 cell lysate (uninf), heat-killed Anaplasma phagocytophilum (hkAP), or heat-killed HL60 cell lysate (hklys).
Sample_descripton: Sample_PMN_treatment = hklys
Sample_descripton: Sample_time = 9
Sample_descripton: Affymetrix MAS version = GCOS1.2
Sample_descripton: GeneSpring (version 7.0)normalization protocol:
Sample_descripton: 1.  Data Transformation:  Set measurements less than 0.0 to 0.0
Sample_descripton: 2.  Per Chip:  Normalize to a constant value of 150.0 (MAS scaling factor)
Sample_descripton: 3.  Per Gene:  Normalize to median
Keywords = NEUTROPHIL RESPONSE TO ANAPLASMA PHAGOCYTOPHILUM


title: ITME6E7_0

description: IMR90 hTERT MekER E6/E7


title: PDCM 3


title: ITV_0

description: IMR90 hTERT empty vector

source_name: ITV cells


title: PDCM 4


title: ITME6E7ST_1

description: IMR90 hTERT MekER E6/E7 ST


title: VDCM 2


title: ITV_1

description: IMR90 hTERT empty vector

source_name: ITV


title: DONOR 8

source_name: DONOR HEART RNA


title: DONOR 4


title: ISHD 10

source_name: ISHD HEART RNA


title: DONOR 6


title: DONOR 7


title: DONOR 3


title: DONOR 2


title: ISHD 9


title: ISHD 8


title: ISHD 6


title: ISHD 5


title: IDCM 5

source_name: IDCM HEART RNA


title: IDCM 7


title: PDCM 1


title: ISHD 2


title: IDCM 4


title: ISHD 1


title: ISHD 4


title: DONOR 1


title: DONOR 5


title: IDCM 1


title: FDCM 4

source_name: FDCM 4 heart RNA


title: ISHD 3


title: HCM 2

source_name: HCM 2 heart RNA


title: HCM 4

source_name: HCM 4 heart RNA


title: HCM 3

source_name: HCM 3 heart RNA


title: DOX 7

description: Hybridization of DOX 4 with control (universal RNA)

source_name: DOX 7 heart RNA


title: FDCM 1

source_name: FDCM 1 heart RNA


title: IDCM 6


title: FDCM 3

source_name: FDCM 3 heart RNA


title: IDCM 2


title: ISHD 7


title: DOX 4

source_name: DOX 4 heart RNA


title: FDCM 2

source_name: FDCM 2 heart RNA


title: HCM 1

source_name: HCM 1heart RNA

source_name: Human universal RNA


title: DOX 5

source_name: DOX 5 heart RNA


title: DOX 1

description: Hybridization of DOX 1 with control (universal RNA)

source_name: DOX 1 heart RNA


title: DOX 3

description: Hybridization of DOX 3 with control (universal RNA)

source_name: DOX 3 heart RNA


title: DOX 6

source_name: DOX 6 heart RNA


title: DOX 2

description: Hybridization of DOX 2 with control (universal RNA)

source_name: DOX 2 heart RNA


title: S136

status: Public on May 12 2005

city: Chiba

first: Akira

last: Nakagawara

address: 666-2 Nitona, Chuo-ku

country: Japan

institute: Chiba Cancer Center Research Institute

description:
Primary human neuroblastoma
Total RNA was extracted from each frozen tissue according to the AGPC method (Chomczynski and Sacchi, 1987). As a reference, a mixture of equal amounts of RNA from each of four neuroblastoma cell lines (NB69, NBL-S, SK-N-AS, and SH-SY5Y) were used. Ten micrograms each of total RNA were labeled with the CyScribe RNA labeling kit according to the manufacturer's manual (Amersham Pharmacia Biotech), followed by probe purification with the Qiagen MinElute PCR purification kit (Qiagen).
RNAs extracted from primary neuroblastoma tissues and RNAs of the reference mixture were labeled with Cy3- and Cy5- conjugated deoxynucleotides (Amersham), respectively, and were used as probes in 3.4 x SSC / 0.3% SDS together with 40 micrograms yeast tRNA and 100 micrograms polyA for suppression. Prior to hybridization, each microarray was soaked at room temperature for 30 min in Blocking solution containing 3% BSA, 0.2M NaCl, 0.1M Tris/HCl (pH 7.5) and 0.05% Triton X-100, dried at 37 degree celcius for 15 min, and washed with TE twice. After removing the remaining TE by centrifugation at 1000 rpm for 2 min, 20 microlitter of probe was applied onto the microarray and covered with a cover glass. The microarray was transferred to humidiated tightly covered box and incubated in 65 degree celcius chamber for 16 hours. The slides were washed twice for 5 min with 2xSSC, 0.1% SDS and then twice with 0.2xSSC, 0.1% SDS for 5 min at room temperature followed by centrifugation at 1000 rpm for 2 min.
Hybridized microarrays were scanned using the Agilent G2505A confocal laser scanner (Agilent Technologies, Inc.), and fluorescent intensities were quantified using the GenePix Pro microarray analysis software (Axon Instruments, Inc.).
Keywords = Primary human neuroblastoma

source_name: Mixture of human neuroblastoma cell lines reference RNA


title: S134


title: S129


title: S128


title: IDCM 3

source_name: IDCM HEART RNA


title: S130


title: S131


title: S132


title: S135


title: S133


title: Drosophila yakuba strain 14021-0261.0 blue gut larvae vs. white prepupae, replicate 7

city: Cambridge

first: Scott

middle: A

last: Rifkin

state: MA

address: 16 Divinity Ave

department: OEB

institute: Harvard University

description:
Comparison between Drosophila yakuba strain 14021-0261.0 start of pupariation (white prepupae) and late 3rd instar larvae (blue gut).
Sample_molecule=polyA RNA.
Sample_scan_protocol=GenePix with Axon 4000 series scanner.
Sample_data_processing=Spot (CSIRO) v2.0.
Extended dataset for Rifkin et al. Nature Genetics. 33: 138.
Updated to Drosophila melanogaster genome release 4.0
Keywords = evolution, Drosophila yakuba, quantitative genetics, heterospecific hybridization, comparative genomics

organism: Drosophila yakuba

source_name: Drosophila yakuba strain 14021-0261.0 late 3rd instar larvae (blue gut)


title: Drosophila yakuba strain 14021-0261.0 blue gut larvae vs. white prepupae, replicate 8

description:
Comparison between Drosophila yakuba strain 14021-0261.0 late 3rd instar larvae (blue gut) and start of pupariation (white prepupae).
Sample_molecule=polyA RNA.
Sample_scan_protocol=GenePix with Axon 4000 series scanner.
Sample_data_processing=Spot (CSIRO) v2.0.
Extended dataset for Rifkin et al. Nature Genetics. 33: 138.
Updated to Drosophila melanogaster genome release 4.0
Keywords = evolution, Drosophila yakuba, quantitative genetics, heterospecific hybridization, comparative genomics

source_name: Drosophila yakuba strain 14021-0261.0 start of pupariation (white prepupae)


title: Drosophila yakuba strain 14021-0261.0 blue gut larvae vs. white prepupae, replicate 5


title: Drosophila yakuba strain 14021-0261.0 blue gut larvae vs. white prepupae, replicate 6


title: Drosophila yakuba strain 14021-0261.0 blue gut larvae vs. white prepupae, replicate 2


title: S127


title: Drosophila melanogaster technical error assessment using larvae and adults, replicate 5

description:
Comparison between adult (stage mix) and larvae (stage mix) for assessing technical error.
Different samples aliquotted from a master TRIzol sludge and processed separately.
Sample_molecule_ch1=polyA RNA.
Sample_extract_protocol=TRIzol (Invitrogen)/Chloroform total RNA extraction. oligo-dT cellulose (Ambion) using poly-prep (BioRad) columns for polyA RNA isolation.
Sample_label_protocol=Atlas (BD Biosciences) amino-allyl labelling protocol.
Sample_hyb_protocol=TIGR #M005.
Sample_scan_protocol=GenePix with Axon 4000 series scanner.
Sample_data_processing=Spot (CSIRO) v2.0.
Keywords = Drosophila melanogaster, technical error

organism: Drosophila melanogaster

source_name: Drosophila melanogaster Canton S adult (stage mix)

source_name: Drosophila melanogaster Canton S larvae (stage mix)


title: Drosophila yakuba strain 14021-0261.0 blue gut larvae vs. white prepupae, replicate 3


title: S125


title: Drosophila melanogaster technical error assessment using larvae and adults, replicate 6

description:
Comparison between larvae (stage mix) and adult (stage mix) for assessing technical error.
Different samples aliquotted from a master TRIzol sludge and processed separately.
Sample_molecule_ch1=polyA RNA.
Sample_extract_protocol=TRIzol (Invitrogen)/Chloroform total RNA extraction. oligo-dT cellulose (Ambion) using poly-prep (BioRad) columns for polyA RNA isolation.
Sample_label_protocol=Atlas (BD Biosciences) amino-allyl labelling protocol.
Sample_hyb_protocol=TIGR #M005.
Sample_scan_protocol=GenePix with Axon 4000 series scanner.
Sample_data_processing=Spot (CSIRO) v2.0.
Keywords = Drosophila melanogaster, technical error


title: S123


title: S119


title: S122


title: S120


title: Drosophila melanogaster technical error assessment using larvae and adults, replicate 8


title: S121


title: S117


title: Drosophila melanogaster technical error assessment using larvae and adults, replicate 4


title: Drosophila melanogaster technical error assessment using larvae and adults, replicate 3


title: S118


title: Drosophila yakuba strain 14021-0261.0 blue gut larvae vs. white prepupae, replicate 1


title: S113


title: Drosophila melanogaster technical error assessment using larvae and adults, replicate 2


title: S115


title: S124


title: Drosophila melanogaster technical error assessment using larvae and adults, replicate 7


title: S114


title: S112


title: Drosophila yakuba strain 14021-0261.0 blue gut larvae vs. white prepupae, replicate 4


title: S108


title: S109


title: S111


title: S126


title: S107


title: Drosophila melanogaster technical error assessment using larvae and adults, replicate 1


title: S105


title: S110


title: S104


title: S100


title: S102


title: S103


title: S099


title: S106


title: S096


title: S098


title: S097


title: S101


title: S090


title: S092


title: S093


title: S094


title: S091


title: S095


title: S089


title: S084


title: S083


title: S088


title: S086


title: S087


title: S085


title: S082


title: S079


title: S080


title: S081


title: S078


title: S072


title: S076


title: S073


title: S077


title: S068


title: NB2256

description:
Primary human neuroblastoma
Total RNA was extracted from each frozen tissue according to the AGPC method (Chomczynski and Sacchi, 1987). As a reference, a mixture of equal amounts of RNA from each of four neuroblastoma cell lines (NB69, NBL-S, SK-N-AS, and SH-SY5Y) were used. Five micrograms each of total RNA were labeled with the CyScribe RNA labeling kit according to the manufacturer's manual (Amersham Pharmacia Biotech), followed by probe purification with the Qiagen MinElute PCR purification kit (Qiagen).
RNAs extracted from primary neuroblastoma tissues and RNAs of the reference mixture were labeled with Cy3- and Cy5- conjugated deoxynucleotides (Amersham), respectively, and were used as probes in 3.4 x SSC / 0.3% SDS together with 40 micrograms yeast tRNA and 100 micrograms polyA for suppression. Prior to hybridization, each microarray was soaked at room temperature for 30 min in Blocking solution containing 3% BSA, 0.2M NaCl, 0.1M Tris/HCl (pH 7.5) and 0.05% Triton X-100, dried at 37 degree celcius for 15 min, and washed with TE twice. After removing the remaining TE by centrifugation at 1000 rpm for 2 min, 20 microlitter of probe was applied onto the microarray and covered with a cover glass. The microarray was transferred to humidiated tightly covered box and incubated in 65 degree celcius chamber for 16 hours. The slides were washed twice for 5 min with 2xSSC, 0.1% SDS and then twice with 0.2xSSC, 0.1% SDS for 5 min at room temperature followed by centrifugation at 1000 rpm for 2 min.
Hybridized microarrays were scanned using the Agilent G2505A confocal laser scanner (Agilent Technologies, Inc.), and fluorescent intensities were quantified using the GenePix Pro microarray analysis software (Axon Instruments, Inc.).
Keywords = Primary human neuroblastoma


title: S071


title: S067


title: S070


title: S065


title: NB2190


title: NB2183


title: S075


title: S064


title: NB2184


title: NB2255


title: NB2254


title: S060


title: S061


title: S063


title: S062


title: S066


title: NB2253


title: NB2252


title: S057


title: S058


title: S059


title: NB2251


title: S069


title: NB2250


title: NB2249


title: S116


title: S054


title: S055


title: NB2248


title: S056


title: NB2247


title: S053


title: S074


title: NB2246


title: S050


title: NB2245


title: NB2244


title: S051


title: NB2243


title: S052


title: S048


title: S047


title: S049


title: NB2242


title: S046


title: NB2241


title: NB2240


title: NB2239


title: NB2192


title: S044


title: NB2238


title: S043


title: NB2237


title: S045


title: NB2234


title: NB2233


title: NB2235


title: S039


title: NB2232


title: NB2231


title: S035


title: NB2229


title: S038


title: S036


title: S037


title: S033


title: S041


title: S042


title: NB2227


title: S032


title: NB2236


title: NB2228


title: AAV-LXR alpha-T09-1

city: Philadelphia

first: Mitchell

middle: A.

last: Lazar

state: PA

address: 415 Curie Boulevard

department: Medicine

institute: University of Pennsylvania

description: Microarray analysis of liver RNA from Low Density Lipoprotein Receptor null mice on C57B6 background expressing human LXR alpha via adeno-associated virus (AAV2.8) gene transfer, under control of the liver specific human thyroxine binding globulin promoter. Samples is from a 8 month old mouse, with AAV treatment at age of 10 weeks, on Western diet for 12 weeks prior experiment. T0901317 (5mg/kg) was administered for 3 days by i.p. injection.

organism: Mus musculus

source_name: AAV-LXR alpha-liver-T09 for 3 days


title: S031


title: NB2226


title: S030


title: AAV-LXR alpha-T09-2


title: AAV-LXR alpha-Vehicle-2

description: Microarray analysis of liver RNA from Low Density Lipoprotein Receptor null mice on C57B6 background expressing human LXR alpha via adeno-associated virus (AAV2.8) gene transfer, under control of the liver specific human thyroxine binding globulin promoter. Samples is from a 8 month old mouse, with AAV treatment at age of 10 weeks, on Western diet for 12 weeks prior experiment. Vehicle as a control substance was administered for 3 days by i.p. injection.

source_name: AAV-LXR alpha-liver-vehicle for 3 days


title: S029


title: S034


title: NB2225


title: NB2230


title: S028


title: NB2224


title: S025


title: AAV-GFP-T09-2

description: Microarray analysis of liver RNA from Low Density Lipoprotein Receptor null mice on C57B6 background expressing GFP (control) via adeno-associated virus (AAV2.8) gene transfer, under control of the liver specific human thyroxine binding globulin promoter. Samples is from a 8 month old mouse, with AAV treatment at age of 10 weeks, on Western diet for 12 weeks prior experiment. T0901317 (5mg/kg) was administered for 3 days by i.p. injection.

source_name: AAV-GFP-liver-T09 for 3 days


title: S026


title: S023


title: AAV-GFP-T09-1


title: NB2223


title: NB2222


title: S022


title: S027


title: AAV-GFP-Vehicle-2

description: Microarray analysis of liver RNA from Low Density Lipoprotein Receptor null mice on C57B6 background expressing GFP (control) via adeno-associated virus (AAV2.8) gene transfer, under control of the liver specific human thyroxine binding globulin promoter. Sample is from a 8 month old mouse, with AAV treatment at age of 10 weeks, on Western diet for 12 weeks prior experiment. Vehicle as a control substance was administered for 3 days by i.p. injection.

source_name: AAV-GFP-liver-vehicle for 3 days


title: S016


title: NB2220


title: AAV-GFP-Vehicle-1


title: NB2219


title: S014


title: S015


title: S017


title: S020


title: AAV-LXR alpha-Vehicle-1


title: S024


title: NB2218


title: S040


title: S021


title: S012


title: NB2217


title: NB2216


title: S013


title: S010


title: S011


title: S018


title: S009


title: NB2215


title: S008


title: S007


title: S003


title: S004


title: S006


title: S005


title: NB2213


title: NB2212


title: NB2214


title: S002


title: S001


title: S019


title: NB2211


title: Drosophila melanogaster strain Netherlands 2 blue gut larvae vs. white prepupae, replicate 8

description:
Comparison between Drosophila melanogaster strain Netherlands 2 start of pupariation (white prepupae) and late 3rd instar larvae (blue gut).
Sample_molecule=polyA RNA.
Sample_scan_protocol=GenePix with Axon 4000 series scanner.
Sample_data_processing=Spot (CSIRO) v2.0.
Extended dataset for Rifkin et al. Nature Genetics. 33: 138.
Updated to Drosophila melanogaster genome release 4.0
Keywords = evolution, Drosophila melanogaster, quantitative genetics, heterospecific hybridization, comparative genomics

source_name: Drosophila melanogaster strain Netherlands 2 late 3rd instar larvae (blue gut)


title: Drosophila simulans strain 14021-0251.167 blue gut larvae vs. white prepupae, replicate 8

description:
Comparison between Drosophila simulans strain 14021-0251.167 start of pupariation (white prepupae) and late 3rd instar larvae (blue gut).
Sample_molecule=polyA RNA.
Sample_scan_protocol=GenePix with Axon 4000 series scanner.
Sample_data_processing=Spot (CSIRO) v2.0.
Extended dataset for Rifkin et al. Nature Genetics. 33: 138.
Updated to Drosophila melanogaster genome release 4.0
Keywords = evolution, Drosophila simulans, quantitative genetics, heterospecific hybridization, comparative genomics

organism: Drosophila simulans

source_name: Drosophila simulans strain 14021-0251.167 late 3rd instar larvae (blue gut)


title: Drosophila melanogaster strain Netherlands 2 blue gut larvae vs. white prepupae, replicate 5

description:
Comparison between Drosophila melanogaster strain Netherlands 2 late 3rd instar larvae (blue gut) and start of pupariation (white prepupae).
Sample_molecule=polyA RNA.
Sample_scan_protocol=GenePix with Axon 4000 series scanner.
Sample_data_processing=Spot (CSIRO) v2.0.
Extended dataset for Rifkin et al. Nature Genetics. 33: 138.
Updated to Drosophila melanogaster genome release 4.0
Keywords = evolution, Drosophila melanogaster, quantitative genetics, heterospecific hybridization, comparative genomics

source_name: Drosophila melanogaster strain Netherlands 2 start of pupariation (white prepupae)


title: Drosophila melanogaster strain Netherlands 2 blue gut larvae vs. white prepupae, replicate 7


title: HUVEC_TNF-stimulated experiment 3

city: Hannover

first: Dorothee

last: Viemann

state: Deutschland

address: Carl-Neuberg-Straße 1

department: Department of Pediatric Pulmonology, Allergy and Neonatology

country: Germany

institute: Hannover Medical School

description: RNA was isolated from HUVEC (passage 3) after stimulation with  2 ng/ml TNF for 5 h.

source_name: HUVEC culture


title: HUVEC_TNF-stimulated experiment 4


title: HUVEC_TNF-stimulated experiment 1


title: HUVEC_control experiment 4

description: RNA was isolated from unstimulated HUVEC (passage 3) cultured for 5 h.


title: HUVEC_TNF-stimulated experiment 2


title: Drosophila simulans strain 14021-0251.167 blue gut larvae vs. white prepupae, replicate 7

source_name: Drosophila simulans strain 14021-0251.167 start of pupariation (white prepupae)


title: Drosophila melanogaster strain Samarkand blue gut larvae vs. white prepupae, replicate 2

description:
Comparison between Drosophila melanogaster strain Samarkand start of pupariation (white prepupae) and late 3rd instar larvae (blue gut).
Sample_molecule=polyA RNA.
Sample_scan_protocol=GenePix with Axon 4000 series scanner.
Sample_data_processing=Spot (CSIRO) v2.0.
Extended dataset for Rifkin et al. Nature Genetics. 33: 138.
Updated to Drosophila melanogaster genome release 4.0
Keywords = evolution, Drosophila melanogaster, quantitative genetics, heterospecific hybridization, comparative genomics

source_name: Drosophila melanogaster strain Samarkand late 3rd instar larvae (blue gut)


title: Drosophila melanogaster strain Netherlands 2 blue gut larvae vs. white prepupae, replicate 3


title: Drosophila melanogaster strain Samarkand blue gut larvae vs. white prepupae, replicate 8

description:
Comparison between Drosophila melanogaster strain Samarkand late 3rd instar larvae (blue gut) and start of pupariation (white prepupae).
Sample_molecule=polyA RNA.
Sample_scan_protocol=GenePix with Axon 4000 series scanner.
Sample_data_processing=Spot (CSIRO) v2.0.
Extended dataset for Rifkin et al. Nature Genetics. 33: 138.
Updated to Drosophila melanogaster genome release 4.0
Keywords = evolution, Drosophila melanogaster, quantitative genetics, heterospecific hybridization, comparative genomics

source_name: Drosophila melanogaster strain Samarkand start of pupariation (white prepupae)


title: NB2221

source_name: Mixture of human neuroblastoma cell lines reference RNA


title: Drosophila simulans strain 14021-0251.167 blue gut larvae vs. white prepupae, replicate 6

description:
Comparison between Drosophila simulans strain 14021-0251.167 late 3rd instar larvae (blue gut) and start of pupariation (white prepupae).
Sample_molecule=polyA RNA.
Sample_scan_protocol=GenePix with Axon 4000 series scanner.
Sample_data_processing=Spot (CSIRO) v2.0.
Extended dataset for Rifkin et al. Nature Genetics. 33: 138.
Updated to Drosophila melanogaster genome release 4.0
Keywords = evolution, Drosophila simulans, quantitative genetics, heterospecific hybridization, comparative genomics


title: Drosophila melanogaster strain Canton S blue gut larvae vs. white prepupae, replicate 3

description:
Comparison between Drosophila melanogaster strain Canton S start of pupariation (white prepupae) and late 3rd instar larvae (blue gut).
Sample_molecule=polyA RNA.
Sample_scan_protocol=GenePix with Axon 4000 series scanner.
Sample_data_processing=Spot (CSIRO) v2.0.
Extended dataset for Rifkin et al. Nature Genetics. 33: 138.
Updated to Drosophila melanogaster genome release 4.0
Keywords = evolution, Drosophila melanogaster, quantitative genetics, heterospecific hybridization, comparative genomics

source_name: Drosophila melanogaster strain Canton S late 3rd instar larvae (blue gut)


title: ku86(wt)_Terc(wt)_2

first: Peter

last: Klatt

department: Molecular Oncology Program

institute: Spanish National Cancer Center (CNIO)

description:
Total RNA from testis of Ku86(+/+);Terc(+/+) mice; experiment 2
Keywords = telomerase
Keywords = Ku86
Keywords = stress
Keywords = DNA damage

source_name: total RNA from testis


title: Drosophila melanogaster strain Samarkand blue gut larvae vs. white prepupae, replicate 4


title: HUVEC_control experiment 2


title: Drosophila simulans strain 14021-0251.167 blue gut larvae vs. white prepupae, replicate 5


title: Drosophila simulans strain 14021-0251.167 blue gut larvae vs. white prepupae, replicate 3


title: HUVEC_control experiment 3


title: Drosophila simulans strain 14021-0251.167 blue gut larvae vs. white prepupae, replicate 4


title: Drosophila melanogaster strain Canton S blue gut larvae vs. white prepupae, replicate 4

description:
Comparison between Drosophila melanogaster strain Canton S late 3rd instar larvae (blue gut) and start of pupariation (white prepupae).
Sample_molecule=polyA RNA.
Sample_scan_protocol=GenePix with Axon 4000 series scanner.
Sample_data_processing=Spot (CSIRO) v2.0.
Extended dataset for Rifkin et al. Nature Genetics. 33: 138.
Updated to Drosophila melanogaster genome release 4.0
Keywords = evolution, Drosophila melanogaster, quantitative genetics, heterospecific hybridization, comparative genomics

source_name: Drosophila melanogaster strain Canton S start of pupariation (white prepupae)


title: Drosophila simulans strain 14021-0251.167 blue gut larvae vs. white prepupae, replicate 1


title: Drosophila melanogaster strain Samarkand blue gut larvae vs. white prepupae, replicate 7


title: HUVEC_control experiment 1


title: Drosophila simulans strain 14021-0251.167 blue gut larvae vs. white prepupae, replicate 2


title: Drosophila melanogaster strain Oregon R blue gut larvae vs. white prepupae, replicate 8

description:
Comparison between Drosophila melanogaster strain Oregon R start of pupariation (white prepupae) and late 3rd instar larvae (blue gut).
Sample_molecule=polyA RNA.
Sample_scan_protocol=GenePix with Axon 4000 series scanner.
Sample_data_processing=Spot (CSIRO) v2.0.
Extended dataset for Rifkin et al. Nature Genetics. 33: 138.
Updated to Drosophila melanogaster genome release 4.0
Keywords = evolution, Drosophila melanogaster, quantitative genetics, heterospecific hybridization, comparative genomics

source_name: Drosophila melanogaster strain Oregon R late 3rd instar larvae (blue gut)


title: Drosophila melanogaster strain Oregon R blue gut larvae vs. white prepupae, replicate 4

source_name: Drosophila melanogaster strain Oregon R start of pupariation (white prepupae)


title: ku86(wt)_Terc(ko)_2

description:
Total RNA from testis of Ku86(+/+);G3-Terc(-/-) mice; experiment 2
Keywords = telomerase
Keywords = Ku86
Keywords = stress
Keywords = DNA damage


title: Drosophila melanogaster strain Samarkand blue gut larvae vs. white prepupae, replicate 5


title: Drosophila melanogaster strain Samarkand blue gut larvae vs. white prepupae, replicate 1


title: Drosophila melanogaster strain Samarkand blue gut larvae vs. white prepupae, replicate 6


title: Drosophila melanogaster strain Netherlands 2 blue gut larvae vs. white prepupae, replicate 6


title: Drosophila melanogaster strain Samarkand blue gut larvae vs. white prepupae, replicate 3


title: HMEC_TNF-stimulated experiment 1

description: RNA was isolated from HMEC (passage 3) after stimulation with  2 ng/ml TNF for 5 h.

source_name: HMEC culture


title: HMEC_TNF-stimulated experiment 3


title: ku86(ko)_Terc(wt)_2

description:
Total RNA from testis of Ku86(-/-);Terc(+/+) mice; experiment 2
Keywords = telomerase
Keywords = Ku86
Keywords = stress
Keywords = DNA damage


title: Drosophila melanogaster strain Netherlands 2 blue gut larvae vs. white prepupae, replicate 4


title: Drosophila melanogaster strain Oregon R blue gut larvae vs. white prepupae, replicate 2


title: ku86(ko)_Terc(wt)_1

description:
Total RNA from testis of Ku86(-/-);Terc(+/+) mice; experiment 1
Keywords = telomerase
Keywords = Ku86
Keywords = stress
Keywords = DNA damage


title: HMEC_TNF-stimulated experiment 2


title: Drosophila melanogaster strain Oregon R blue gut larvae vs. white prepupae, replicate 7

description:
Comparison between Drosophila melanogaster strain Oregon R late 3rd instar larvae (blue gut) and start of pupariation (white prepupae).
Sample_molecule=polyA RNA.
Sample_scan_protocol=GenePix with Axon 4000 series scanner.
Sample_data_processing=Spot (CSIRO) v2.0.
Extended dataset for Rifkin et al. Nature Genetics. 33: 138.
Updated to Drosophila melanogaster genome release 4.0
Keywords = evolution, Drosophila melanogaster, quantitative genetics, heterospecific hybridization, comparative genomics


title: HMEC_control experiment 3

description: RNA was isolated from unstimulated HMEC (passage 3) cultured for 5 h.


title: HMEC_control experiment 2


title: ku86(ko)_Terc(ko)_2

description:
Total RNA from testis of Ku86(-/-);G3-Terc(-/-) mice; experiment 2
Keywords = telomerase
Keywords = Ku86
Keywords = stress
Keywords = DNA damage


title: Drosophila melanogaster strain Canton S blue gut larvae vs. white prepupae, replicate 8


title: Drosophila melanogaster strain Oregon R blue gut larvae vs. white prepupae, replicate 1


title: T_SJ_ALL_73

status: Public on May 11 2005

city: New Haven

first: Jun

last: Lu

state: CT

address: 10 Amistad St

department: Yale Stem Cell Center and Department of Genetics

institute: Yale University

description: A tumor sample from the B cell ALL.

source_name: St Jude


title: T_SJ_ALL_71

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_67

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_68

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_72

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_66

description: A tumor sample from the B cell ALL.


title: ku86(wt)_Terc(ko)_1

description:
Total RNA from testis of Ku86(+/+);G3-Terc(-/-) mice; experiment 1
Keywords = telomerase
Keywords = Ku86
Keywords = stress
Keywords = DNA damage


title: HMEC-I control

source_name: unstimulated HMEC culture experiment 1


title: Drosophila melanogaster strain Oregon R blue gut larvae vs. white prepupae, replicate 5


title: Drosophila melanogaster strain Netherlands 2 blue gut larvae vs. white prepupae, replicate 2

description:
Comparison between Drosophila melanogaster strain Netherlands 2 late 3rd instar larvae (blue gut) and start of pupariation (white prepupae).
Sample_molecule=polyA RNA.
Sample_scan_protocol=GenePix with Axon 4000 series scanner.
Sample_data_processing=Spot (CSIRO) v2.0.
Extended dataset for Rifkin et al. Nature Genetics. 33: 138.
Updated to Drosophila melanogaster genome release 4.0
Keywords = evolution, Drosophila melanogaster, quantitative genetics, heterospecific hybridization, comparative genomics


title: T_SJ_ALL_70

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_65

description: A tumor sample from the B cell ALL.


title: Drosophila melanogaster strain Canton S blue gut larvae vs. white prepupae, replicate 2


title: T_SJ_ALL_62

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_64

description: A tumor sample from the B cell ALL.


title: Drosophila melanogaster strain Oregon R blue gut larvae vs. white prepupae, replicate 3


title: T_SJ_ALL_63

description: A tumor sample from the B cell ALL.


title: ku86(wt)_Terc(wt)_1

description:
Total RNA from testis of Ku86(+/+);Terc(+/+) mice; experiment 1
Keywords = telomerase
Keywords = Ku86
Keywords = stress
Keywords = DNA damage


title: T_SJ_ALL_61

description: A tumor sample from the B cell ALL.


title: Drosophila melanogaster strain Oregon R blue gut larvae vs. white prepupae, replicate 6


title: T_SJ_ALL_58

description: A tumor sample from the T cell ALL.


title: T_SJ_ALL_60

description: A tumor sample from the B cell ALL.


title: Drosophila melanogaster strain Canton S blue gut larvae vs. white prepupae, replicate 1


title: T_SJ_ALL_59

description: A tumor sample from the T cell ALL.


title: Drosophila melanogaster strain Canton S blue gut larvae vs. white prepupae, replicate 5


title: T_SJ_ALL_52

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_57

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_48

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_51

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_55

description: A tumor sample from the T cell ALL.


title: T_SJ_ALL_54

description: A tumor sample from the T cell ALL.


title: T_SJ_ALL_46

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_49

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_69

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_47

description: A tumor sample from the T cell ALL.


title: T_SJ_ALL_50

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_45

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_53

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_56

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_41

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_44

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_36

description: A tumor sample from the T cell ALL.


title: Drosophila melanogaster strain Canton S blue gut larvae vs. white prepupae, replicate 7


title: T_SJ_ALL_42

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_39

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_40

description: A tumor sample from the T cell ALL.


title: T_SJ_ALL_37

description: A tumor sample from the T cell ALL.


title: T_SJ_ALL_43

description: A tumor sample from the T cell ALL.


title: T_SJ_ALL_33

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_38

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_35

description: A tumor sample from the B cell ALL.


title: Drosophila melanogaster strain Netherlands 2 blue gut larvae vs. white prepupae, replicate 1


title: Drosophila melanogaster strain Canton S blue gut larvae vs. white prepupae, replicate 6


title: T_SJ_ALL_27

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_26

description: A tumor sample from the T cell ALL.


title: T_SJ_ALL_29

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_28

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_30

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_34

description: A tumor sample from the T cell ALL.


title: T_SJ_ALL_31

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_23

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_32

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_24

description: A tumor sample from the T cell ALL.


title: T_SJ_ALL_25

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_20

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_17

description: A tumor sample from the T cell ALL.


title: T_SJ_ALL_22

description: A tumor sample from the T cell ALL.


title: T_SJ_ALL_18

description: A tumor sample from the T cell ALL.


title: T_SJ_ALL_14

description: A tumor sample from the T cell ALL.


title: T_SJ_ALL_12

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_15

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_11

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_21

description: A tumor sample from the T cell ALL.


title: T_SJ_ALL_19

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_8

description: A tumor sample from the T cell ALL.


title: T_SJ_ALL_10

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_3

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_7

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_4

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_13

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_5

description: A tumor sample from the T cell ALL.


title: T_SJ_ALL_2

description: A tumor sample from the B cell ALL.


title: T_SJ_ALL_6

description: A tumor sample from the B cell ALL.


title: N_ERYTH_6

description: Erythroid differentiation of CD34 cells, day 12

source_name: MIT


title: T_SJ_ALL_9

description: A tumor sample from the B cell ALL.


title: PDT_BRST_5

description: A poorly differentiated tumor sample from the breast.

source_name: Ramaswamy study


title: T_SJ_ALL_1

description: A tumor sample from the B cell ALL.


title: N_ERYTH_5

description: Erythroid differentiation of CD34 cells, day 10


title: N_ERYTH_4

description: Erythroid differentiation of CD34 cells, day 8


title: PDT_BRST_3


title: T_SJ_ALL_16

description: A tumor sample from the B cell ALL.


title: N_ERYTH_3

description: Erythroid differentiation of CD34 cells, day 6


title: N_ERYTH_2

description: Erythroid differentiation of CD34 cells, day 4


title: N_ERYTH_1

description: Erythroid differentiation of CD34 cells, day 2


title: PDT_BRST_1


title: PDT_LUNG_6

description: A poorly differentiated tumor sample from the lung.


title: PDT_LUNG_5


title: PDT_BRST_4


title: PDT_LBL_1

description: A tumor sample from the large B cell lymphoma.


title: PDT_LUNG_3


title: PDT_BRST_2


title: PDT_LUNG_4


title: PDT_LUNG_8


title: PDT_LUNG_7


title: PDT_LUNG_2


title: PDT_LUNG_1


title: T_MLUNG_7

description: A tumor sample from the mouse lung.


title: PDT_OVARY_2

description: A poorly differentiated tumor sample from the ovary.


title: PDT_STOM_1

description: A tumor sample from the stomach.


title: PDT_OVARY_3


title: PDT_OVARY_1


title: PDT_COLON_1

description: A poorly differentiated tumor sample from the colon.


title: T_MLUNG_2

description: A tumor sample from the mouse lung.


title: T_MLUNG_6

description: A tumor sample from the mouse lung.


title: T_MLUNG_5

description: A tumor sample from the mouse lung.


title: N_MLUNG_3

description: A normal sample from the mouse lung.


title: T_MLUNG_1

description: A tumor sample from the mouse lung.


title: N_MLUNG_4

description: A normal sample from the mouse lung.


title: T_MLUNG_4

description: A tumor sample from the mouse lung.


title: N_MLUNG_5

description: A normal sample from the mouse lung.


title: MMRC_fB3_T2

status: Public on Oct 18 2005

city: Rensselaer

first: Sridar

middle: V

last: Chittur

state: NY

address: One Discovery Drive, CRC 342G

department: Center for Functional Genomics

institute: SUNY-University at Albany

description:
Strain: 129
Sex: f
Age: 1 wk
Tissue: brain
Biological Replicate: 3
Technical Replicate: 2
Dye: Cy3

source_name: Mouse Brain

source_name: Universal Mouse Reference RNA (Stratagene)


title: TCL_TF-1_1

description: A tumor cell-line sample from the acute myelogenous leukemia.


title: N_MLUNG_2

description: A normal sample from the mouse lung.


title: TCL_TF-1_3


title: TCL_TF-1_2


title: T_MLUNG_3

description: A tumor sample from the mouse lung.


title: N_MLUNG_1

description: A normal sample from the mouse lung.


title: TCL_HEL_2


title: TCL_HEL_3


title: TCL_K562_1


title: TCL_K562_2


title: T_MF_3

description: A tumor sample from the mycosis fungoides.


title: TCL_HEL_1


title: T_MF_1


title: T_MF_2


title: T_LBL_5

source_name: Dana Farber


title: T_LBL_8


title: T_LBL_6


title: T_LBL_2


title: T_LBL_1


title: T_LBL_4


title: T_FCC_7

description: A tumor sample from the follicular cleaved lymphoma.


title: T_LBL_3


title: T_FCC_8


title: T_FCC_6


title: T_LBL_7


title: T_FCC_3


title: T_FCC_5


title: T_FCC_2


title: T_FCC_4


title: TCL_ALLCL_10

description: A tumor cell-line sample from the T cell ALL.


title: TCL_ALLCL_8


title: TCL_ALLCL_7


title: T_FCC_1


title: TCL_ALLCL_6


title: TCL_ALLCL_9


title: TCL_ALLCL_4


title: TCL_ALLCL_5


title: TCL_ALLCL_1


title: TCL_ALLCL_3


title: T_TALL_18

description: A tumor sample from the T cell ALL.


title: TCL_ALLCL_2


title: T_TALL_15

description: A tumor sample from the T cell ALL.


title: T_TALL_17

description: A tumor sample from the T cell ALL.


title: T_TALL_13

description: A tumor sample from the T cell ALL.


title: T_TALL_16

description: A tumor sample from the T cell ALL.


title: T_TALL_10

description: A tumor sample from the T cell ALL.


title: T_TALL_6

description: A tumor sample from the T cell ALL.


title: T_TALL_8

description: A tumor sample from the T cell ALL.


title: T_TALL_9

description: A tumor sample from the T cell ALL.


title: T_TALL_14

description: A tumor sample from the T cell ALL.


title: T_TALL_7

description: A tumor sample from the T cell ALL.


title: T_TALL_5

description: A tumor sample from the T cell ALL.


title: T_TALL_3

description: A tumor sample from the T cell ALL.


title: T_TALL_12

description: A tumor sample from the T cell ALL.


title: T_BALL_25

description: A tumor sample from the B cell ALL.


title: T_TALL_1

description: A tumor sample from the T cell ALL.


title: T_TALL_4

description: A tumor sample from the T cell ALL.


title: T_BALL_24

description: A tumor sample from the B cell ALL.


title: T_TALL_11

description: A tumor sample from the T cell ALL.


title: T_BALL_23

description: A tumor sample from the B cell ALL.


title: T_BALL_20

description: A tumor sample from the B cell ALL.


title: T_BALL_22

description: A tumor sample from the B cell ALL.


title: T_BALL_21

description: A tumor sample from the B cell ALL.


title: T_BALL_14

description: A tumor sample from the B cell ALL.


title: T_BALL_15

description: A tumor sample from the B cell ALL.


title: T_BALL_12

description: A tumor sample from the B cell ALL.


title: T_BALL_19

description: A tumor sample from the B cell ALL.


title: T_BALL_10

description: A tumor sample from the B cell ALL.


title: T_BALL_11

description: A tumor sample from the B cell ALL.


title: T_BALL_18

description: A tumor sample from the B cell ALL.


title: T_TALL_2

description: A tumor sample from the T cell ALL.


title: T_BALL_4

description: A tumor sample from the B cell ALL.


title: T_BALL_26

description: A tumor sample from the B cell ALL.


title: T_BALL_16

description: A tumor sample from the B cell ALL.


title: T_BALL_17

description: A tumor sample from the B cell ALL.


title: T_BALL_5

description: A tumor sample from the B cell ALL.


title: T_BALL_7

description: A tumor sample from the B cell ALL.


title: T_BALL_9

description: A tumor sample from the B cell ALL.


title: T_BALL_1

description: A tumor sample from the B cell ALL.


title: T_BALL_6

description: A tumor sample from the B cell ALL.


title: TCL_MCF-7_3

description: A tumor cell-line sample from the breast.


title: TCL_MCF-7_5


title: T_BALL_8

description: A tumor sample from the B cell ALL.


title: T_BALL_3

description: A tumor sample from the B cell ALL.


title: T_BALL_13

description: A tumor sample from the B cell ALL.


title: TCL_MCF-7_4


title: N_BRAIN_2

description: A normal sample from the brain.


title: T_BALL_2

description: A tumor sample from the B cell ALL.


title: T_BRST_5

description: A tumor sample from the breast.


title: TCL_MCF-7_2


title: N_BRAIN_1

description: A normal sample from the brain.


title: TCL_MCF-7_1


title: T_BRST_1

description: A tumor sample from the breast.


title: T_BRST_3

description: A tumor sample from the breast.


title: T_BRST_4

description: A tumor sample from the breast.


title: T_BRST_2

description: A tumor sample from the breast.


title: T_BRST_6

description: A tumor sample from the breast.


title: T_MELA_1

description: A tumor sample from the melanoma.


title: N_BRST_3

description: A normal sample from the breast.


title: T_MELA_3

description: A tumor sample from the melanoma.


title: TCL_SKMEL-5_1

description: A tumor cell-line sample from the melanoma.


title: TCL_SKMEL-5_2


title: N_BRST_1

description: A normal sample from the breast.


title: N_BRST_2

description: A normal sample from the breast.


title: T_MESO_3

description: A tumor sample from the mesothelioma.


title: T_MESO_1

description: A tumor sample from the mesothelioma.


title: T_MESO_4

description: A tumor sample from the mesothelioma.


title: T_MESO_2

description: A tumor sample from the mesothelioma.


title: T_MESO_6

description: A tumor sample from the mesothelioma.


title: T_MESO_8

description: A tumor sample from the mesothelioma.


title: T_MESO_7

description: A tumor sample from the mesothelioma.


title: T_MESO_5

description: A tumor sample from the mesothelioma.


title: T_LUNG_4

description: A tumor sample from the lung.


title: T_LUNG_2

description: A tumor sample from the lung.


title: T_MELA_2

description: A tumor sample from the melanoma.


title: T_LUNG_3

description: A tumor sample from the lung.


title: T_LUNG_6

description: A tumor sample from the lung.


title: T_LUNG_1

description: A tumor sample from the lung.


title: T_LUNG_5

description: A tumor sample from the lung.


title: N_LUNG_2

description: A normal sample from the lung.


title: N_LUNG_3

description: A normal sample from the lung.


title: N_LUNG_1

description: A normal sample from the lung.


title: N_LUNG_4

description: A normal sample from the lung.


title: T_UT_10

description: A tumor sample from the uterus.


title: T_UT_8

description: A tumor sample from the uterus.


title: T_UT_9

description: A tumor sample from the uterus.


title: T_UT_7

description: A tumor sample from the uterus.


title: T_UT_4

description: A tumor sample from the uterus.


title: T_UT_3

description: A tumor sample from the uterus.


title: T_UT_6

description: A tumor sample from the uterus.


title: N_UT_9

description: A normal sample from the uterus.


title: T_UT_2

description: A tumor sample from the uterus.


title: N_UT_8

description: A normal sample from the uterus.


title: T_OVARY_6

description: A tumor sample from the ovary.


title: T_OVARY_7

description: A tumor sample from the ovary.


title: N_UT_5

description: A normal sample from the uterus.


title: N_UT_1

description: A normal sample from the uterus.


title: N_UT_3

description: A normal sample from the uterus.


title: T_OVARY_5

description: A tumor sample from the ovary.


title: T_OVARY_3

description: A tumor sample from the ovary.


title: T_OVARY_4

description: A tumor sample from the ovary.


title: N_UT_4

description: A normal sample from the uterus.


title: N_UT_7

description: A normal sample from the uterus.


title: TCL_PC-3_4

description: A tumor cell-line sample from the prostate.


title: T_UT_1

description: A tumor sample from the uterus.


title: T_OVARY_2

description: A tumor sample from the ovary.


title: TCL_PC-3_3


title: N_UT_6

description: A normal sample from the uterus.


title: T_OVARY_1

description: A tumor sample from the ovary.


title: TCL_PC-3_2


title: T_PROST_4

description: A tumor sample from the prostate.


title: T_PROST_6

description: A tumor sample from the prostate.


title: TCL_PC-3_1


title: T_PROST_5

description: A tumor sample from the prostate.


title: T_PROST_3

description: A tumor sample from the prostate.


title: T_PROST_2

description: A tumor sample from the prostate.


title: N_UT_2

description: A normal sample from the uterus.


title: N_PROST_2

description: A normal sample from the prostate.


title: N_PROST_6

description: A normal sample from the prostate.


title: TCL_293_1

description: A tumor cell-line sample from the kidney.


title: N_PROST_1

description: A normal sample from the prostate.


title: N_PROST_3

description: A normal sample from the prostate.


title: N_BLDR_1

description: A normal sample from the bladder.


title: T_BLDR_7

description: A tumor sample from the bladder.


title: T_PROST_1

description: A tumor sample from the prostate.


title: T_BLDR_2

description: A tumor sample from the bladder.


title: T_BLDR_4

description: A tumor sample from the bladder.


title: N_PROST_7

description: A normal sample from the prostate.


title: N_PROST_8

description: A normal sample from the prostate.


title: TCL_293_2


title: TCL_293_3


title: N_PROST_5

description: A normal sample from the prostate.


title: T_BLDR_6

description: A tumor sample from the bladder.


title: T_BLDR_5

description: A tumor sample from the bladder.


title: N_PROST_4

description: A normal sample from the prostate.


title: T_BLDR_3

description: A tumor sample from the bladder.


title: T_KID_5

description: A tumor sample from the kidney.


title: T_BLDR_1

description: A tumor sample from the bladder.


title: N_BLDR_2

description: A normal sample from the bladder.


title: T_KID_4

description: A tumor sample from the kidney.


title: T_UT_5

description: A tumor sample from the uterus.


title: T_KID_3

description: A tumor sample from the kidney.


title: T_KID_1

description: A tumor sample from the kidney.


title: T_KID_2

description: A tumor sample from the kidney.


title: N_KID_3

description: A normal sample from the kidney.


title: N_KID_2

description: A normal sample from the kidney.


title: N_LVR_2

description: A normal sample from the liver.


title: T_PAN_7

description: A tumor sample from the pancreas.


title: N_KID_1

description: A normal sample from the kidney.


title: T_PAN_5

description: A tumor sample from the pancreas.


title: T_PAN_4

description: A tumor sample from the pancreas.


title: N_LVR_3

description: A normal sample from the liver.


title: N_LVR_1

description: A normal sample from the liver.


title: T_COLON_10

description: A tumor sample from the colon.


title: N_PAN_1

description: A normal sample from the pancreas.


title: T_PAN_1

description: A tumor sample from the pancreas.


title: T_PAN_9

description: A tumor sample from the pancreas.


title: T_PAN_8

description: A tumor sample from the pancreas.


title: T_PAN_6

description: A tumor sample from the pancreas.


title: T_PAN_3

description: A tumor sample from the pancreas.


title: T_COLON_8

description: A tumor sample from the colon.


title: T_COLON_5

description: A tumor sample from the colon.


title: T_COLON_7

description: A tumor sample from the colon.


title: T_COLON_4

description: A tumor sample from the colon.


title: T_COLON_9

description: A tumor sample from the colon.


title: T_COLON_3

description: A tumor sample from the colon.


title: T_PAN_2

description: A tumor sample from the pancreas.


title: T_COLON_2

description: A tumor sample from the colon.


title: T_COLON_6

description: A tumor sample from the colon.


title: N_COLON_2

description: A normal sample from the colon.


title: N_COLON_1

description: A normal sample from the colon.


title: N_COLON_3

description: A normal sample from the colon.


title: N_COLON_4

description: A normal sample from the colon.


title: T_COLON_1

description: A tumor sample from the colon.


title: N_COLON_5

description: A normal sample from the colon.


title: N_STOM_6

description: A normal sample from the stomach.


title: N_STOM_2

description: A normal sample from the stomach.


title: N_STOM_4

description: A normal sample from the stomach.


title: TCL_HL60_5

description: HL-60 cells treated with ATRA for 3 days


title: TCL_HL60_6

description: HL-60 cells treated with ATRA for 5 days


title: N_STOM_5

description: A normal sample from the stomach.


title: N_STOM_3

description: A normal sample from the stomach.


title: N_STOM_1

description: A normal sample from the stomach.


title: TCL_HL60_3

description: HL-60 cells treated with vehicle for 5 days


title: TCL_HL60_2

description: HL-60 cells treated with vehicle for 3 days


title: TCL_HL60_4

description: HL-60 cells treated with ATRA for 1 day


title: TCL_HL60_1

description: HL-60 cells treated with vehicle for 1 day


title: Fibroblasts 24 hours after sham-irradiation (3)

city: Little Rock

first: Marjan

last: Boerma

state: AR

address: 4301 West Markham, Slot 725

institute: University of Arkansas for Medical Sciences

description: A culture of neonatal rat heart fibroblasts was sham-irradiated (at room temperature), to serve as a control for cultures of fibroblasts after ionising radiation.

organism: Rattus norvegicus

source_name: Cardiac fibroblasts in culture


title: TS21 sample 1 (cerebellum)

status: Public on May 10 2005

city: Baltimore

first: Jonathan

last: Pevsner

state: MD

address: 707 N. Broadway

department: Neurology

institute: Kennedy Krieger Institute

description:
RNA isolated from fetal cerebellum
Keywords = trisomy
Keywords = brain
Keywords = Down syndrome

source_name: fetal cerebellum (18-19 weeks gestation)


title: TS21 sample 2 (astrocyte)

description:
RNA isolated from astrocyte cell lines derived from fetal cerebrum
Keywords = trisomy
Keywords = brain
Keywords = Down syndrome

source_name: fetal astrocyte cell lines (17-20 weeks gestation)


title: Euploid sample 3 (cerebrum_TS13)

description:
RNA isolated from fetal cerebrum
Keywords = trisomy 13
Keywords = brain
Keywords = Patau syndrome

source_name: fetal cerebrum (18 weeks gestation)


title: TS21 sample 1 (astrocyte)


title: Euploid sample 2 (heart)

description:
RNA isolated from fetal heart (predominantly valve and canal regions)
Keywords = trisomy
Keywords = heart
Keywords = Down syndrome

source_name: fetal heart (18-19 weeks gestation)


title: TS21 sample 2 (heart)


title: TS13 sample 2 (cerebrum)

source_name: fetal cerebrum (19-21 weeks gestation)


title: TS21 sample 3 (cerebellum)


title: LPS3

city: Pittsburgh

first: Tamas

last: Dolinay

department: Pulmonary, Allergy and Critical Care

institute: Univerisity of Pittsburgh Medical Center

description: E. coli lipopolysaccaride (O127:BO serotype) injection 3mg/kg sample 3

source_name: mouse lung tissue


title: TS13 sample 3 (cerebrum)


title: Euploid sample 2 (cerebrum_TS13)


title: overventilation1

description: Mechanical ventilation with 25cmH2O pressure (overventilation) 3h sample 1


title: Euploid sample 1 (heart)


title: Euploid sample 2 (astrocyte)

source_name: fetal astrocyte cell lines (17-10 weeks gestation)


title: Euploid sample 1 (cerebrum_TS13)


title: Euploid sample 1 (Astrocyte)


title: TS21 sample 2 (cerebellum)


title: overventilation3

description: Mechanical ventilation with 25cmH2O pressure (overventilation) 3h sample 3


title: TS13 sample 1 (cerebrum)


title: overventilation2

description: Mechanical ventilation with 25cmH2O pressure (overventilation) 3h sample 2


title: Euploid sample 3 (Cerebellum)

source_name: fetal cerebellum


title: Euploid sample 3 (cerebrum)

description:
RNA isolated from fetal cerebrum
Keywords = trisomy
Keywords = brain
Keywords = Down syndrome


title: TS21 sample 1 (heart)


title: Euploid sample 2 (cerebrum)


title: LPS2

description: E. coli lipopolysaccaride (O127:BO serotype) injection 3mg/kg sample 2


title: Euploid sample 1 (cerebellum)


title: Trisomy 21 sample 4 (cerebrum)

source_name: fetal cerebrum (18 to 19 weeks gestation)


title: Euploid sample 4 (cerebrum)


title: Euploid sample 1 (cerebrum)


title: Euploid sample 2 (cerebellum)

source_name: fatal cerebellum (18-19 weeks gestation)


title: LPS1

description: E. coli lipopolysaccaride (O127:BO serotype) injection 3mg/kg sample 1


title: c1

description: control 1 condition


title: H-4000A

status: Public on May 08 2005

city: Wageningen

first: Linette

last: Pellis

address: Bornsesteeg 45

country: Netherlands

institute: RIKILT-Institute of Food Safety

description: HT29 exposed to 4000ng/ml folic acid

source_name: Caco-2, HT29, CCD841CoTr


title: H-100B

description: HT29 exposed to 100ng/ml folic acid


title: CD-4000A

description: CCD841CoTr exposed to 4000ng/ml folic acid


title: H-10B

description: HT29 exposed to 10ng/ml folic acid


title: Trisomy 21 sample 3 (cerebrum)


title: H-10A

description: HT29 exposed to 10ng/ml folic acid


title: Trisomy 21 sample 1 (cerebrum)


title: CD-4000B


title: H-100A

description: HT29 exposed to 100ng/ml folic acid


title: CD-10A

description: CCD841CoTr exposed to 10ng/ml folic acid


title: H-4000B

description: HT29 exposed to 4000ng/ml folic acid


title: CD-100A

description: CCD841CoTr exposed to 100ng/ml folic acid


title: CD-10B


title: control3

description: control 3 sample


title: control2

description: control 2 sample


title: CC-4000A

description: Caco-2 exposed to 4000ng/ml folic acid


title: CC-10B

description: Caco-2 exposed to 10ng/ml folic acid


title: CC-4000B

description: Caco-2 exposed to 4000ng/ml folic acid


title: CD-100B


title: CC-10A

description: Caco-2 exposed to 10ng/ml folic acid


title: Ku86(ko)_Terc(ko)_1

description:
Total RNA from testis of Ku86(-/-);G3-Terc(-/-) mice; experiment 1
Keywords = telomerase
Keywords = Ku86
Keywords = stress
Keywords = DNA damage

source_name: total RNA from testis


title: CC-100B

description: Caco-2 exposed to 100ng/ml folic acid


title: Trisomy 21 sample 2 (cerebrum)


title: Spotted dick Chromatin immunopurification 3

status: Public on May 07 2005

type: genomic

first: Andrew

middle: Robin

last: Page

address: Downing Street

department: Department of Genetics

country: United Kingdom

institute: University of Cambridge

description: Chromatin enriched by immunopurification with antibodies against the Drosophila transcription factor spotted dick compared with pre immune sera on a cDNA microarray

molecule: genomic DNA

source_name: anti-spotted dick chromatin

source_name: pre-immune sera chromatin


title: Spotted dick Chromatin immunopurification 1


title: CC-100A

description: Caco-2 exposed to 100ng/ml folic acid


title: Spotted dick Chromatin immunopurification 4


title: C57BL/10 QF replicate 2

status: Public on May 06 2005

city: Newcastle-upon-Tyne

first: Steve

last: Laval

institute: Institute of Human Genetics

description: 3-week old C57BL/10 QF mouse muscle, replicate 2

source_name: Dysf +/+ QF control mouse muscle


title: C57BL/10 control TA, replicate 3

description: 3-week old C57BL/10 control TA mouse muscle, replicate 3

source_name: Dysf +/+ TA control mouse muscle


title: Spotted dick Chromatin immunopurification 2


title: C57BL/10-SJL.Dysf TA, replicate 3

description: 3-week old C57BL/10-SJL.Dysf TA mouse muscle, replicate 3

source_name: Dysf -/- TA mouse muscle


title: CT8

city: Lexington

first: Eric

middle: M

last: Blalock

state: KY

address: 800 Rose St.

department: Molecular and Biomedical Pharmacology

institute: University of Kentucky

description:
Hippocampal cultures at DIV 12 were infected with either As-aCaN or Ad-LacZ, or were uninfected
Keywords = bioinformatics
Keywords = gene expression
Keywords = calcineurin
Keywords = calcium
Keywords = Alzheimer's
Keywords = inflamation
Keywords = Adenovirus
Keywords = astrocytes
Keywords = microarray

source_name: Primary Hippocampal Culture


title: C57BL/10-SJL.Dysf TA, replicate 1

description: 3-week old C57BL/10-SJL.Dysf TA mouse muscle, replicate 1


title: CT5-2


title: CT-2


title: CT6


title: CT7


title: C57BL/10 TA, replicate 1

description: 3-week old C57BL/10 control TA mouse muscle, replicate 1

source_name: Dysf +/+ control mouse muscle


title: AdLacz-2


title: AdLacz-1


title: C57BL/10 control TA, replicate 2

description: 3-week old C57BL/10 control TA mouse muscle, replicate 2

source_name: Dysf +/+ control TA mouse muscle


title: C57BL/10 QF, replicate 3

description: 3-week old C57BL/10 QF mouse muscle, replicate 3


title: adLacZ8


title: C57BL/10-SJL.Dysf QF replicate 3

description: 3-week old C57BL/10-SJL.Dysf QF mouse muscle, replicate 3

source_name: Dysf -/- QF mouse muscle


title: adLacZ6


title: adLacZ5


title: C57BL/10-SJL.Dysf QF replicate 2

description: 3-week old C57BL/10-SJL.Dysf QF mouse muscle, replicate 2


title: CT4


title: C57BL/10-SJL.Dysf TA, replicate 2

description: 3-week old C57BL/10-SJL.Dysf TA mouse muscle, replicate 2


title: adLacZ7


title: adACN9


title: CT3


title: adLacZ4


title: C57BL/10-SJL.Dysf QF replicate 1

description: 3-week old C57BL/10-SJL.Dysf QF mouse muscle, replicate 1

source_name: Dysf -/- QF muscle


title: AdACN-2


title: C57BL/10 Control QF, replicate 1

description: 3-week old C57BL/10 QF mouse muscle, replicate 1


title: AdACN-1


title: adACN7


title: adACN8


title: adACN6


title: adACN3


title: adACN5


title: adACN4


title: T3 (2h) on hypothyroid mice liver (2.2)

status: Public on May 04 2005

city: Stockholm

first: Amilcar

last: Flores

country: Sweden

institute: Karolinska Institute

description: Comparing hepatic expression of hypothyroid wild type ( WT) mice with hypothyroid  WT mice treated with thyroid hormone (T3)

source_name: WT hypothyroid mice liver (pooledx5)

source_name: WT hypothyroid mice liver+T3(2h)(pooledx5)


title: liver,hypothyroid TRbeta-/-vs liver,hypothyroid WT(1.2)

description: Comparing hepatic expression of hypothyroids WT mice with hypothyroid thyroid hormone receptor beta - /- (knockout) mice

source_name: mice liver hypothyroid WT (pooled5x)

source_name: mice liver hypothyroid TRbeta-/- (pooled5x)


title: T3(2h) in hypothyroid mice liver (2.1)

description: Comparison of hepatic expression of hypothyroid wild type ( WT) mice with hypothyroid  WT mice treated with thyroid hormone (T3)

source_name: RNA,WT hypothyroid liver (pooledx5)


title: Hepatic effects of T3 (2h) of hypothyroid TRbeta-/- mice (3.1)

description: Comparing hepatic expression of hypothyroid thyroid hormone receptor beta -/- mice with hypothyroid thyroid hormone receptor beta -/- mice treated with thyroid hormone (T3)

source_name: liver TR beta -/- T3 treated

source_name: liver TR beta -/- mice


title: H1 Hepatic effects of T3 (2h) of hypothyroid TRbeta-/- mice (3.2)

source_name: pool of total RNA from livers of hypothyroid TR beta -/- mice treated with T3 for 2h


title: Gata-1 Wild Type B

city: Chicago

first: John

last: Crispino

state: IL

institute: The University of Chicago

description: Progenitors were isolated from 13.5 day mouse fetal livers and grown into megakaryocytes in differentiation media. Megakaryocytes were isolated on a BSA gradient and RNA isolated.

source_name: Mouse Megakaryocytes


title: female Vs. male young rat liver (1.1)

description: Liver RNA was hybridised to arrays containing 6240 spots. Each female rat was compared to one male rat, in a total of 4 hybridisations.

source_name: gender,sex,liver male Cy5 Total RNA

source_name: gender,sex,liver female Cy3 Total RNA


title: liver hypothyroid WT vs liver hypopthyroid TRbeta-/- mice (1.1)

description: Comparison of liver gene expression of Hypothyroids wild type and TRbeta -/- mice.

source_name: hypothyroid WT liver(pooledx5)

source_name: hypothyroid TRbete-/- liver(pooledx5)


title: Gata-1 Wild Type C


title: HEPATOCYTES, GROWTH HORMONE, 24 hours

description: primary rat hepartocytes treated with 100 ng/ml bGH for 24h. Control and treated samples were harvested at the same time. Cultured in Williams E medium with insulin and vitamin C supplemented. 4 biological replicas, 8 hybridisations in	Hepatocytes prepared in 2001 on commercial matrigel

source_name: HEPATOCYTES, GROWTH HORMONE, 24 hours GH Cy5 Total RNA

source_name: Untreated


title: Gata-1 Knock Down C


title: Effect of 17 alpha Ethinylestradiol on male rats (4)

description: Intact adult Male rats, 3 months of age, were treated with 17 alpha ethinylestradiol (5 mg/kg body weight) for 1 day. Reversed.

source_name: estrogen EE control #4 Cy5 Total RNA

source_name: estrogen EE 1day #10 Cy3 Total RNA


title: Effect of 17 alpha Ethinylestradiol on male rats (2)

description: Intact adult Male rats, 3 months of age, were treated with 17 alpha ethinylestradiol (5 mg/kg body weight) for 1 day. Forward.

source_name: estrogen EE 1day male #8 Cy5 Total RNA

source_name: estrogen EE control male #6 Cy3 Total RNA


title: Effect of 17 alpha Ethinylestradiol on male rats (3)

source_name: estrogen EE control #3 Cy5 Total RNA

source_name: estrogen EE 1day #9 Cy3 Total RNA


title: Gata-1 Wild Type A


title: Gata-1 Knock Down A


title: female Vs. male young rat liver (1.3)

source_name: gender,sex,liver female rat 3 Cy5 Total RNA

source_name: gender,sex,liver male rat 3 Cy3 Total RNA


title: HEPATOCYTES, GROWTH HORMONE, RAT, 24 hours (3.1)

source_name: HEPATOCYTES, GROWTH HORMONE, RAT 24 hours GH Cy3 Total RNA


title: HEPATOCYTES, GROWTH HORMONE, RAT 24 hours GH (4.2)


title: female Vs. male young rat liver (1.4)

source_name: gender,sex,liver female rat 4 Cy5 Total RNA

source_name: gender,sex,liver male rat 4 Cy3 Total RNA


title: HEPATOCYTES, GROWTH HORMONE, RAT 24 hours GH (4.1)

source_name: HEPATOCYTES, GROWTH HORMONE, RAT 24 hours GH Cy5 Total RNA


title: female Vs. male young rat liver (1.2)

source_name: gender,sex,liver male rat 6 Cy5 Total RNA

source_name: gender,sex,liver female rat 6 Cy3 Total RNA


title: HEPATOCYTES, GROWTH HORMONE, RAT Treated 48 Hours (2)

description: primary rat hepartocytes treated with 100 ng/ml bGH for 48h. Control and treated samples were harvested at the same time. Cultured in Williams E medium with insulin and vitamin C supplemented. 4 biological replicas, 8 hybridisations in	Hepatocytes prepared in 2001 on commercial matrigel

source_name: HEPATOCYTES, GROWTH HORMONE, RAT Treated 48 Hours Cy3 Total RNA


title: Effect of continuous GH treatment in old rat liver (3)

description: Male rats, 2-year-old, were treated with vehicle or human GH (0.34 microgram/gram body weight) for 3 weeks. Individual RNA were used for 4 microarray hybridization. Dye swapped.

source_name: rat (old), liver, growth hormone, minipump Prisse #22, old male control rat Cy5 Total RNA

source_name: rat (old), live, growth hormone, minipump Prisse #3, old male GH minipump rat Cy3 Total RNA


title: Gata-1 Knock Down B

source_name: Mouse Megakaryocytes


title: Effect of continuous GH treatment in old rat liver (4)

source_name: rat (old), live, growth hormone, minipump Prisse #24, old male control rat Cy3 Total RNA

source_name: rat (old), live, growth hormone, minipump Prisse #2, old male GH minipump rat Cy5 Total RNA


title: Effect of 17 alpha Ethinylestradiol on male rats (1)

source_name: estrogen EE 1day male #11 Cy5 Total RNA

source_name: estrogen EE control male #5 Cy3 Total RNA


title: HEPATOCYTES, GROWTH HORMONE, RAT Treated 48 Hours

source_name: HEPATOCYTES, GROWTH HORMONE, RAT treated Cy3 Total RNA

source_name: Untreated


title: Effect of continuous GH treatment in old rat liver (2)

description: Male rats, 2-year-old, were treated with vehicle or human GH (0.34 microgram/gram body weight) for 3 weeks. Individual RNA were used for 4 microarray hybridization. Dye swapped. Cy3 GH minipump, Cy5 control. Reversed.

source_name: rat (old), live, growth hormone, minipump Prisse #21, old male control rat Cy5 Total RNA

source_name: rat (old), live, growth hormone, minipump Prisse #6, old male GH minipump rat Cy3 Total RNA


title: GH 24h reverse

description:
Different batches of primary rat hepartocytes treated with 100 ng/ml bGH for 24h. Control and treated samples were harvested at the same time. Cultured in Williams E medium with insulin and vitamin C supplemented. 4 biological replicas.
Hepatocytes prepared in 2001 on commercial matrigel. Same batch of cells. Insulin concentration high. 24h bGH treatment.

source_name: HEPATOCYTES, GROWTH HORMONE, RAT Treated Cy3 Total RNA

source_name: HEPATOCYTES, GROWTH HORMONE, RAT untreated Cy5 Total RNA


title: Rat Hepatocyte 24h forward

description: Different batches of primary rat hepartocytes treated with 100 ng/ml bGH for 24h. Control and treated samples were harvested at the same time. Cultured in Williams E medium with insulin and vitamin C supplemented. 4 biological replicas, 8 hybridisations in Hepatocytes prepared in 2001 on commercial matrigel. Insulin concentration high. 24h bGH treatment.

source_name: HEPATOCYTES, GROWTH HORMONE, RAT Untreated Cy3 Total RNA

source_name: HEPATOCYTES, GROWTH HORMONE, RAT Treated Cy5 Total RNA


title: B Cell aIgM-G2

status: Public on May 03 2005

city: La Jolla

first: Jennifer

last: Hammond

state: CA

address: 10550 N. Torrey Pines Rd.

institute: The Scripps Research Institute

description:
B cells were purified from splenocytes subjected to cell culture and activated with 10 ug/ml anti-IgM and 10 ng/ml IL-4
full description of sample found in Elena M. Comelli, Mark Sutton-Smith, Qi Yan, Margarida Amado, Maria Panico, Tim Gilmartin, Thomas Whisenant, Caroline M. Lanigan, Steven R. Head, David Goldberg, Howard R. Morris, Anne Dell, and James C. Paulson. (2005). Changes in N-linked Glycosylation of Activated T and B Cells Resulting from Altered Expression of Terminal Glycosyltransferases (in publication).
Keywords = N-linked glycosylation, T cell, B cell, activation, glycosyltransferase, carbohydrate, glycomics, glycan, galactosyltransferase, sialyltransferase

source_name: splenocytes from C57Bl/6 male mice (6-10 wks old)


title: B Cell Fresh-E4

description:
B cells were purified from fresh splenocytes (cells not subjected to cell culture) from C57Bl/6 male mice (6-10 wks old)
full description of sample found in Elena M. Comelli, Mark Sutton-Smith, Qi Yan, Margarida Amado, Maria Panico, Tim Gilmartin, Thomas Whisenant, Caroline M. Lanigan, Steven R. Head, David Goldberg, Howard R. Morris, Anne Dell, and James C. Paulson. (2005). Changes in N-linked Glycosylation of Activated T and B Cells Resulting from Altered Expression of Terminal Glycosyltransferases (in publication).
Keywords = N-linked glycosylation, T cell, B cell, activation, glycosyltransferase, carbohydrate, glycomics, glycan, galactosyltransferase, sialyltransferase


title: B Cell Fresh-K1


title: B Cell Fresh-G1


title: Effect of continuous GH treatment in old rat liver

description:
Male rats, 2-year-old, were treated with vehicle or human GH (0.34 microgram/gram body weight) for 3 weeks. Individual RNA were used for 4 microarray hybridization. Dye swapped.
Cy3 GH minipump, Cy5 control. Reversed.

source_name: rat (old), liver, growth hormone, minipump Prisse #20, old male control rat Cy5 Total RNA

source_name: rat (old), liver, growth hormone, minipump Prisse #4, old male GH minipump rat Cy3 Total RNA


title: CD8 IL2/IL12-L4

description:
CD8 T cells and B cells were purified from splenocytes subjected to cell culture and activated with 4 ng/ml IL-2 and 5 ng/ml IL-12
full description of sample found in Elena M. Comelli, Mark Sutton-Smith, Qi Yan, Margarida Amado, Maria Panico, Tim Gilmartin, Thomas Whisenant, Caroline M. Lanigan, Steven R. Head, David Goldberg, Howard R. Morris, Anne Dell, and James C. Paulson. (2005). Changes in N-linked Glycosylation of Activated T and B Cells Resulting from Altered Expression of Terminal Glycosyltransferases (in publication).
Keywords = N-linked glycosylation, T cell, B cell, activation, glycosyltransferase, carbohydrate, glycomics, glycan, galactosyltransferase, sialyltransferase


title: B Cell aIgM-H2


title: CD8 Fresh-C3

description:
CD8 T cells and B cells were purified from fresh splenocytes (cells not subjected to cell culture) from C57Bl/6 male mice (6-10 wks old)
full description of sample found in Elena M. Comelli, Mark Sutton-Smith, Qi Yan, Margarida Amado, Maria Panico, Tim Gilmartin, Thomas Whisenant, Caroline M. Lanigan, Steven R. Head, David Goldberg, Howard R. Morris, Anne Dell, and James C. Paulson. (2005). Changes in N-linked Glycosylation of Activated T and B Cells Resulting from Altered Expression of Terminal Glycosyltransferases (in publication).
Keywords = N-linked glycosylation, T cell, B cell, activation, glycosyltransferase, carbohydrate, glycomics, glycan, galactosyltransferase, sialyltransferase


title: CD8 IL2/IL12-H1


title: CD8 IL2/IL12-D4


title: CD4 IL2/IL12-D3

description:
CD4 T cells and B cells were purified from splenocytes subjected to cell culture and activated with 4 ng/ml IL-2 and 5 ng/ml IL-12
full description of sample found in Elena M. Comelli, Mark Sutton-Smith, Qi Yan, Margarida Amado, Maria Panico, Tim Gilmartin, Thomas Whisenant, Caroline M. Lanigan, Steven R. Head, David Goldberg, Howard R. Morris, Anne Dell, and James C. Paulson. (2005). Changes in N-linked Glycosylation of Activated T and B Cells Resulting from Altered Expression of Terminal Glycosyltransferases (in publication).
Keywords = N-linked glycosylation, T cell, B cell, activation, glycosyltransferase, carbohydrate, glycomics, glycan, galactosyltransferase, sialyltransferase


title: CD8 IL2/IL4-C4

description:
CD8 T cells and B cells were purified from splenocytes subjected to cell culture and activated with 4 ng/ml IL-2 and 10 ng/ml IL-4
full description of sample found in Elena M. Comelli, Mark Sutton-Smith, Qi Yan, Margarida Amado, Maria Panico, Tim Gilmartin, Thomas Whisenant, Caroline M. Lanigan, Steven R. Head, David Goldberg, Howard R. Morris, Anne Dell, and James C. Paulson. (2005). Changes in N-linked Glycosylation of Activated T and B Cells Resulting from Altered Expression of Terminal Glycosyltransferases (in publication).
Keywords = N-linked glycosylation, T cell, B cell, activation, glycosyltransferase, carbohydrate, glycomics, glycan, galactosyltransferase, sialyltransferase


title: CD8 IL2/IL4-A4


title: CD8 IL2-L2

description:
CD8 T cells and B cells were purified from splenocytes subjected to cell culture and activated with 4 ng/ml IL-2
full description of sample found in Elena M. Comelli, Mark Sutton-Smith, Qi Yan, Margarida Amado, Maria Panico, Tim Gilmartin, Thomas Whisenant, Caroline M. Lanigan, Steven R. Head, David Goldberg, Howard R. Morris, Anne Dell, and James C. Paulson. (2005). Changes in N-linked Glycosylation of Activated T and B Cells Resulting from Altered Expression of Terminal Glycosyltransferases (in publication).
Keywords = N-linked glycosylation, T cell, B cell, activation, glycosyltransferase, carbohydrate, glycomics, glycan, galactosyltransferase, sialyltransferase


title: CD8 IL2-D2


title: AdjacentNeu_Ker51

city: Cleveland

first: Melissa

last: Landis

state: OH

address: 2109 Adelbert

department: Pharmacology

institute: Case Western Reserve School of Medicine

description:
RNA from prenoplastic mammary gland that is adjacent to erbB2-induced tumor/ part of a 14 genechip exp comparing tumors, preneoplastic neu mammary gland (adjacent neu), and age-matched, wild-type control mammary glands to identify early events of erbB2/neu-induced tumorigenesis
Keywords = transgenic mouse
Keywords = MMTV-neu
Keywords = erbB2
Keywords = HER2
Keywords = mammary tumor
Lot batch = 2004907

source_name: preneoplastic MMTV-neu mammary gland that surrounds a MMTV-neu-induced tumor


title: CD8 IL2-E2


title: CD8 Fresh-B3


title: CD8 Fresh-A3


title: B Cell aIgM-K2


title: CD4 IL2/IL4-C2

description:
CD4 T cells and B cells were purified from splenocytes subjected to cell culture and activated with 4 ng/ml IL-2 and 10 ng/ml IL-4
full description of sample found in Elena M. Comelli, Mark Sutton-Smith, Qi Yan, Margarida Amado, Maria Panico, Tim Gilmartin, Thomas Whisenant, Caroline M. Lanigan, Steven R. Head, David Goldberg, Howard R. Morris, Anne Dell, and James C. Paulson. (2005). Changes in N-linked Glycosylation of Activated T and B Cells Resulting from Altered Expression of Terminal Glycosyltransferases (in publication).
Keywords = N-linked glycosylation, T cell, B cell, activation, glycosyltransferase, carbohydrate, glycomics, glycan, galactosyltransferase, sialyltransferase


title: CD8 IL2/IL4-B4


title: CD4 IL2/IL12-E3


title: CD4 IL2/IL4-B2


title: CD4 IL2/IL4-A2


title: CD4 IL2/IL12-L3


title: CD4 IL2-E1

description:
CD4 T cells and B cells were purified from splenocytes subjected to cell culture and activated with 4 ng/ml IL-2
full description of sample found in Elena M. Comelli, Mark Sutton-Smith, Qi Yan, Margarida Amado, Maria Panico, Tim Gilmartin, Thomas Whisenant, Caroline M. Lanigan, Steven R. Head, David Goldberg, Howard R. Morris, Anne Dell, and James C. Paulson. (2005). Changes in N-linked Glycosylation of Activated T and B Cells Resulting from Altered Expression of Terminal Glycosyltransferases (in publication).
Keywords = N-linked glycosylation, T cell, B cell, activation, glycosyltransferase, carbohydrate, glycomics, glycan, galactosyltransferase, sialyltransferase


title: Uninjured Control - Epicenter Rep1

first: James

middle: Bradley

last: Aimone

address: 10010 N. Torrey Pines Rd

department: Laboratory of Genetics

institute: Salk Institute

description: RNA characterization of tissue from the injury location (~T8) in an uninjured animal. From the Christopher Reeve Paralysis Foundation Research Consortium microarray study (www.crpf.org/microarray)

source_name: Spinal Cord, Epicenter (~T8)


title: Uninjured Control - Epicenter Rep2


title: CD4 IL2-L1


title: Contusion - 35 Day Epicenter Rep3

description: RNA characterization of tissue from the injury site, 35 days post-injury. From the Christopher Reeve Paralysis Foundation Research Consortium microarray study (www.crpf.org/microarray)


title: AdjacentNeu_Ker49


title: Uninjured Control - Epicenter Rep3


title: CD4 Fresh-C1

description:
CD4 T cells and B cells were purified from fresh splenocytes (cells not subjected to cell culture) from C57Bl/6 male mice (6-10 wks old)
full description of sample found in Elena M. Comelli, Mark Sutton-Smith, Qi Yan, Margarida Amado, Maria Panico, Tim Gilmartin, Thomas Whisenant, Caroline M. Lanigan, Steven R. Head, David Goldberg, Howard R. Morris, Anne Dell, and James C. Paulson. (2005). Changes in N-linked Glycosylation of Activated T and B Cells Resulting from Altered Expression of Terminal Glycosyltransferases (in publication).
Keywords = N-linked glycosylation, T cell, B cell, activation, glycosyltransferase, carbohydrate, glycomics, glycan, galactosyltransferase, sialyltransferase


title: Tumor_setB_Ker81

description:
MMTV-neu mouse mammary tumor set B/ the two tumors in set B were part of a second group of tumors which were used to determine whether there was repeated observation of original changes of gene expression/ part of a 14 genechip exp comparing tumors, preneoplastic neu mammary gland (adjacent neu), and age-matched, wild-type control mammary glands to identify early events of erbB2/neu-induced tumorigenesis

Keywords = transgenic mouse
Keywords = MMTV-neu
Keywords = erbB2
Keywords = HER2
Keywords = mammary tumor
Lot batch = 2006609

source_name: MMTV-neu mouse mammary tumor


title: CD4 Fresh-A1


title: AdjacentNeu_Ker23

description:
RNA from prenoplastic mammary gland that is adjacent to erbB2-induced tumor/ part of a 14 genechip exp comparing tumors, preneoplastic neu mammary gland (adjacent neu), and age-matched, wild-type control mammary glands to identify early events of erbB2/neu-induced tumorigenesis
Keywords = transgenic mouse
Keywords = MMTV-neu
Keywords = erbB2
Keywords = HER2
Keywords = mammary tumor
Lot batch = 2001815


title: AMWT_Ker41

description:
pooled RNA from mammary glands from 5 mice/ part of a 14 genechip exp comparing tumors, preneoplastic neu mammary gland (adjacent neu), and age-matched, wild-type control mammary glands to identify early events of erbB2/neu-induced tumorigenesis

Keywords = transgenic mouse
Keywords = MMTV-neu
Keywords = erbB2
Keywords = HER2
Keywords = mammary tumor
Lot batch = 2003877

source_name: 41wk FVB(97%)/CF-1 (3%) mammary gland


title: AdjacentNeu_Ker25


title: Tumor_Ker24

description:
MMTV-neu mouse mammary tumor/ part of a 14 genechip exp comparing tumors, preneoplastic neu mammary gland (adjacent neu), and age-matched, wild-type control mammary glands to identify early events of erbB2/neu-induced tumorigenesis
Keywords = transgenic mouse
Keywords = MMTV-neu
Keywords = erbB2
Keywords = HER2
Keywords = mammary tumor
Lot batch = 2001815


title: AMWT_Ker40

description:
pooled RNA from mammary glands from 5 mice/ part of a 14 genechip exp comparing tumors, preneoplastic neu mammary gland (adjacent neu), and age-matched, wild-type control mammary glands to identify early events of erbB2/neu-induced tumorigenesis
Keywords = transgenic mouse
Keywords = MMTV-neu
Keywords = erbB2
Keywords = HER2
Keywords = mammary tumor
Lot batch = 2004907

source_name: 31wk FVB(87.5%)/CF-1 (12.5%) mammary gland


title: Contusion - 35 Day Epicenter Rep1


title: Tumor_setB_Ker80

description:
MMTV-neu mouse mammary tumor set B/ the two tumors in set B were part of a second group of tumors which were used to determine whether there was repeated observation of original changes of gene expression/ part of a 14 genechip exp comparing tumors, preneoplastic neu mammary gland (adjacent neu), and age-matched, wild-type control mammary glands to identify early events of erbB2/neu-induced tumorigenesis
Keywords = transgenic mouse
Keywords = MMTV-neu
Keywords = erbB2
Keywords = HER2
Keywords = mammary tumor
Lot batch = 2006609


title: Tumor_Ker26


title: CD4 IL2-D1


title: Tumor_Ker52

description:
MMTV-neu mouse mammary tumor, part of a 14 genechip exp comparing tumors, preneoplastic neu mammary gland (adjacent neu), and age-matched, wild-type control mammary glands to identify early events of erbB2/neu-induced tumorigenesis
Keywords = transgenic mouse
Keywords = MMTV-neu
Keywords = erbB2
Keywords = HER2
Keywords = mammary tumor
Lot batch = 2004097


title: CD4 Fresh-B1


title: Tumor_Ker50


title: Arabidopsis Root 1

status: Public on May 02 2005

city: Pasadena

first: Yuling

last: Jiao

address: 1200 E California Blvd

department: Biology

institute: California Institute of Technology

description:
Arabidopsis seedling photomorphogenesis, roots, white light vs. dark.
Keywords = Arabidopsis
Keywords = photomorphogenesis

organism: Arabidopsis thaliana

source_name: six-day Arabidopsis seedling roots under continuous white light

source_name: six-day Arabidopsis seedling roots in dark


title: Arabidopsis Root 3


title: Arabidopsis far-red light 1

description:
Arabidopsis seedling photomorphogenesis, whole seedlings, far-red light vs. dark.
Keywords = Arabidopsis
Keywords = photomorphogenesis

source_name: six-day Arabidopsis seedlings under continuous far-red light

source_name: six-day Arabidopsis seedlings in dark


title: Arabidopsis red light 2

description:
Arabidopsis seedling photomorphogenesis, whole seedlings, red light vs. dark.
Keywords = Arabidopsis
Keywords = photomorphogenesis

source_name: six-day Arabidopsis seedlings under continuous red light


title: Arabidopsis red light 3


title: XX2_Paf

city: Storrs

first: Adam

middle: S

last: Raefski

address: 354 Mansfield Road

department: MCB

institute: University of Connecticut

description: Neonatal (P0) whole brain mRNA from 40,XX female C57BL/6J x C3H/Paf

source_name: P0 Whole Brain


title: XX1_Paf


title: Arabidopsis white light 2

description:
Arabidopsis seedling photomorphogenesis, whole seedlings, white light vs. dark.
Keywords = Arabidopsis
Keywords = photomorphogenesis

source_name: six-day Arabidopsis seedlings under continuous white light


title: Arabidopsis Cotyledon 1

description:
Arabidopsis seedling photomorphogenesis, cotyledons, white light vs. dark.
Keywords = Arabidopsis
Keywords = photomorphogenesis

source_name: six-day Arabidopsis seedling cotyledons under continuous white light

source_name: six-day Arabidopsis seedling cotyledons in dark


title: Arabidopsis white light 3


title: Arabidopsis far-red light 2


title: Arabidopsis red light 1


title: Arabidopsis blue light 3

description:
Arabidopsis seedling photomorphogenesis, whole seedlings, blue light vs. dark.
Keywords = arabidopsis
Keywords = photomorphogenesis

source_name: six-day Arabidopsis seedlings under continuous blue light


title: Arabidopsis white light 1


title: Tumor_Ker22

description:
MMTV-neu mouse mammary tumor, part of a 14 genechip exp comparing tumors, preneoplastic neu mammary gland (adjacent neu), and age-matched, wild-type control mammary glands to identify early events of erbB2/neu-induced tumorigenesis
Keywords = transgenic mouse
Keywords = MMTV-neu
Keywords = erbB2
Keywords = HER2
Keywords = mammary tumor
Lot batch = 2001815


title: Arabidopsis Cotyledon 2


title: Arabidopsis Cotyledon 3


title: XX3_Paf


title: Arabidopsis blue light 2


title: Contusion - 35 Day Epicenter Rep2

description: RNA characterization of tissue from the injury site, 35 days post-injury. From the Christopher Reeve Paralysis Foundation Research Consortium microarray study (www.crpf.org/microarray)


title: Rice white light 3

description:
Rice seedling photomorphogenesis, whole seedlings, white light vs. dark.
Keywords = rice
Keywords = photomorphogenesis

organism: Oryza sativa

source_name: ten-day rice seedlings under continuous white light

source_name: ten-day rice seedlings in dark


title: Arabidopsis blue light 1


title: Arabidopsis Root 2

description:
Arabidopsis seedling photomorphogenesis, roots, white light vs. dark.
Keywords = arabidopsis
Keywords = photomorphogenesis


title: XX19_InX

description: Neonatal (P0) whole brain mRNA from 40,XX female In(X)/C3H x C57BL/6J


title: Arabidopsis far-red light 3


title: Rice white light 2


title: Rice white light 1


title: 293T cells untreated (sample 2)

first: Bettina

last: Groschel

address: 10010 North Torrey Pines Road

department: Infectious Disease

institute: The Salk Institute

description: Total RNA from untreated 293T cells (2 samples) was isolated using RNeasy Midi Kit (QIAGEN, Valencia) followed by gene expression profiling on Affymetrix human U133A arrays and analysis by MAS 5.1.

source_name: 293T cells


title: hTERT transduced CD4+ T lymphocyte clone, 80 PDs

city: Essen

first: Ludger

last: Klein-Hitpass

address: Virchowstr. 173

department: Universitaetsklinikum

institute: Institut fuer Zellbiologie

description:
CD4+ T lymphocyte clone was generated by single-cell sorting. Cells were cultured in RPMI 1640 medium containing 10% human serum supplemented with 100U/ml rIL-2 and weekly stimulated with PHA and 1E+06/ml irradiated (3000 rad) allogenic mononuclear feeder cells. The cells were transduced with hTERT-GFP vector at population doubling PD=25. The population doubling (PD) of the cells analysed was PD=80. The cells were 10 days after initial stimulation at the time of RNA isolation. RNA samples were processed and hybridized to Affymetrix GeneChips according to the manufacturers recommendations. Image analysis was done using Affymetrix MAS5.0. Arrays were normalized by global scaling to a TGT of 1000.
Keywords = hTERT
Keywords = telomerase
Keywords = T lymphocytes

source_name: CD4+ T lymphocytes


title: XX1_InX

description: Neonatal (P0) whole brain mRNA from 40,XX females In(X)/C3H x C57BL/6J


title: XpO18

description: Neonatal (P0) whole brain mRNA from 39,Xp (XpO) In(X)/C3H x C57BL/6J


title: hTERT transduced CD4+ T lymphocyte clone, 44 PDs

description:
CD4+ T lymphocyte clone was generated by single-cell sorting. Cells were cultured in RPMI 1640 medium containing 10% human serum supplemented with 100U/ml rIL-2 and weekly stimulated with PHA and 1E+06/ml irradiated (3000 rad) allogenic mononuclear feeder cells. The cells were transduced with hTERT-GFP vector at population doubling PD=25. The population doubling (PD) of the cells analysed was PD=44. The cells were 10 days after initial stimulation at the time of RNA isolation. RNA samples were processed and hybridized to Affymetrix GeneChips according to the manufacturers recommendations. Image analysis was done using Affymetrix MAS5.0. Arrays were normalized by global scaling to a TGT of 1000.
Keywords = hTERT
Keywords = telomerase
Keywords = T lymphocytes


title: XpO15


title: Rice shoot 2

description:
Rice seedling photomorphogenesis, seedling shoots, white light vs. dark.
Keywords = rice
Keywords = photomorphogenesis

source_name: ten-day rice seedling shoots in dark

source_name: ten-day rice seedling shoots under continuous white light


title: XmO7

description: Neonatal (P0) whole brain mRNA from 39,Xm (XmO) C57BL/6J x C3H/Paf


title: Rice root 3

description:
Rice seedling photomorphogenesis, seedling roots, white light vs. dark.
Keywords = rice
Keywords = photomorphogenesis

source_name: ten-day rice seedling roots under continuous white light

source_name: ten-day rice seedling roots in dark


title: Rice shoot 1


title: Rice root 2


title: XmO1


title: 293T cells untreated (sample 1)


title: GFP-control transduced CD4+ T lymphocyte clone, 47 PDs

description:
CD4+ T lymphocyte clone was generated by single-cell sorting. Cells were cultured in RPMI 1640 medium containing 10% human serum supplemented with 100U/ml rIL-2 and weekly stimulated with PHA and 1E+06/ml irradiated (3000 rad) allogenic mononuclear feeder cells. The cells were transduced with GFP-control vector at population doubling PD=25. The population doubling (PD) of the cells analysed was PD=47. The cells were 10 days after initial stimulation at the time of RNA isolation. RNA samples were processed and hybridized to Affymetrix GeneChips according to the manufacturers recommendations. Image analysis was done using Affymetrix MAS5.0. Arrays were normalized by global scaling to a TGT of 1000.
Keywords = hTERT
Keywords = telomerase
Keywords = T lymphocytes


title: Rice far-red light 3

description:
Rice seedling photomorphogenesis, whole seedlings, far-red light vs. dark.
Keywords = rice
Keywords = photomorphogenesis

source_name: ten-day rice seedlings under continuous far-red light


title: Rice red light 2

description:
Rice seedling photomorphogenesis, whole seedlings, red light vs. dark.
Keywords = rice
Keywords = photomorphogenesis

source_name: ten-day rice seedlings under continuous red light


title: Rice far-red light 2


title: Rice red light 1


title: AMWT_Ker42

description:
pooled RNA from mammary glands from 5 control mice/ part of a 14 genechip exp comparing tumors, preneoplastic neu mammary gland (adjacent neu), and age-matched, wild-type control mammary glands to identify early events of erbB2/neu-induced tumorigenesis
Keywords = transgenic mouse
Keywords = MMTV-neu
Keywords = erbB2
Keywords = HER2
Keywords = mammary tumor
Lot batch = 2003877

source_name: 41wk FVB(97%)/CF-1 (3%) mammary gland


title: Rice red light 3


title: XmO2


title: Rice blue light 3

description:
Rice seedling photomorphogenesis, whole seedlings, blue light vs. dark.
Keywords = rice
Keywords = photomorphogenesis

source_name: ten-day rice seedlings under continuous blue light


title: CD4+ T lymphocyte clone, 32 PDs

description:
CD4+ T lymphocyte clone was generated by single-cell sorting. Cells were cultured in RPMI 1640 medium containing 10% human serum supplemented with 100U/ml rIL-2 and weekly stimulated with PHA and 1E+06/ml irradiated (3000 rad) allogenic mononuclear feeder cells. The population doubling (PD) of the cells analysed was PD=32. The cells were 10 days after initial stimulation at the time of RNA isolation. RNA samples were processed and hybridized to Affymetrix GeneChips according to the manufacturers recommendations. Image analysis was done using Affymetrix MAS5.0. Arrays were normalized by global scaling to a TGT of 1000.
Keywords = hTERT
Keywords = telomerase
Keywords = T lymphocytes


title: Rice blue light 2


title: Rice blue light 1


title: Rice shoot 3


title: Rice root 1


title: Rice far-red light 1


title: Rover_mutants_4

status: Public on May 01 2005

city: Mississauga

first: Zak

last: Razak

state: ON

address: 3359 Mississauga Road

department: Zoology Department

country: Canada

institute: University of Toronto

description:
Array Number:  12906623
Total RNA was extracted from Drosophila third instar larvae using Trizol Reagent (Invitrogen). Please refer to Osborne et al. 1997 (PMID: 9242616) for information on the fly strains.  80ug of RNA, quantified by A260 using a NanoDrop spectrophotometer (NanoDrop Technologies, Wilmington, DE), was used in each direct labeling reaction (see <http://www.flyarrays.com>) to generate fluorescently labeled cDNA. The respective Cy3 and Cy5 targets were suspended in 75 uL DIG EasyHyb solution (Roche, Mississauga, ON) and were competitively hybridized to the array for 17.75 hours in a CMT-GAPS hybridization chamber (Corning, Acton, MA). Scanning was performed with a ScanArray 4000 system (Perkin Elmer, Boston, MA) using the following settings: 10uM scan: Cy3(543 nm) 100-73, Cy5(633 nm) 100-64 (laser power-PMT Gain). Quantification was performed using QuantArray v3 software (Perkin Elmer) using the adaptive algorithm without background subtraction. The data in the file is not normalized. The ratio in the Value column was derived from normalized data (not shown) as discussed in the manuscript.
Keywords = Drosophila
Keywords = foraging
Keywords = behavior
Keywords = cGMP
Keywords = guanylyl cyclase
Keywords = genetic background
Lot batch = D12K_300404

source_name: Untreated Rover third instar larvae

source_name: Untreated DGCalpha1[3] Rover third instar larvae