title: MD_II_100_min

description:
Simple annotation: Oxidative stress, Menadione
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40973.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.77; Parameter Scan Time = 15:44:40; Parameter PMT Volts = 550; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 20589; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.77; Parameter Scan Time = 15:44:40; Parameter PMT Volts = 790; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 19310; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.14; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira


title: H2O2_II_77_min

status: Public on Feb 04 2005

type: RNA

city: Palo Alto

first: Michael

last: Shapira

state: CA

address: 300 Pasteur Dr. Lane Bldg. room L309

department: Genetics

country: USA

institute: Stanford University

description:
Simple annotation: Oxidative stress, H2O2
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40955.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.92; Parameter Scan Time = 18:23:53; Parameter PMT Volts = 520; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 20353; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.38; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.92; Parameter Scan Time = 18:23:53; Parameter PMT Volts = 720; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 19074; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.13; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

molecule: total RNA

organism: Saccharomyces cerevisiae

source_name: Cy3: DBY8724-usynchronous culture- 1.2e7 cells/ml

source_name: Cy5: DBY8724- synchronous culture-77 min after release from G1 arrest


title: 2mM MD 020min

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-07/18427.gif

source_name: Cy3: Asynchronous yeast culture grown to 0.56 OD

source_name: Cy5: experiment-0.40 OD


title: HEL Mhi-3

status: Public on Feb 03 2005

city: Canberra

first: Lina

last: Tze

state: ACT

country: Australia

institute: John Curtin School of Medical Research

description:
Interleukin-7 expanded bone marrow cells from anti-HEL immunoglobulin transgenic mice were sorted by FACS for surface IgM high, IgDneg-low expression.  The U74Av1 probe arrays were subjected to U74A mask corrections, and all target hybridization intensities were scaled to 1500 arbitrary units using Microarray Suite 5.0 (Affymetrix). (Tze etal. Public Library of Science Biology, In Press 2005)
Raw data obtained from Affymetrix Suite 5.0 program with all arrays subjected to MG-U74A mask corrections and scaling to taget intensity of '1500'.  Listed are all probe sets excluding masked probe sets and Affymetrix hybridization control probe sets.
Keywords = bone marrow B cells

organism: Mus musculus

source_name: Interleukin-7 expanded murine bone marrow cells


title: H2O2_II_49_min

description:
Simple annotation: Oxidative stress, H2O2
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40951.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.49; Parameter Scan Time = 17:41:39; Parameter PMT Volts = 510; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 20311; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.70; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.49; Parameter Scan Time = 17:41:39; Parameter PMT Volts = 750; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 19032; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.09; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-49 min after release from G1 arrest


title: H2O2_II_56_min

description:
Simple annotation: Oxidative stress, H2O2
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40952.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.55; Parameter Scan Time = 17:51:26; Parameter PMT Volts = 510; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 20321; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.66; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.55; Parameter Scan Time = 17:51:26; Parameter PMT Volts = 750; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 19042; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.12; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-56 min after release from G1 arrest


title: FxE HA-4

description:
Bone marrow cells from Bcl-2 transgenic mice were sorted by FACS for immature B cell population (B220+IgM+IgDneg) and cells were cultured for 1-2 days(s) in the presence of herbimycin A.  The U74Av2 probe arrays were subjected to U74A mask corrections, and all target hybridization intensities were scaled to 1500 arbitrary units using Microarray Suite 5.0 (Affymetrix). (Tze etal. Public Library of Science Biology, In Press 2005)
Raw data obtained from Affymetrix Suite 5.0 program with all arrays subjected to MG-U74A mask corrections and scaling to taget intensity of '1500'.  Listed are all probe sets excluding masked probe sets and Affymetrix hybridization control probe sets.
Keywords = bone marrow B cells

source_name: Murine bone marrow cells


title: 2mM MD 040min

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-07/18425.gif


title: GFPpos-1

description:
Interleukin-7 expanded bone marrow immature B cells from anti-HEL immunoglobulin/Rag-2-GFP double transgenic mice were recultured in the absence of interleukin-7 and in the presence of herbimycin A for 1 day and sorted by FACS for surface IgM+ and GFP+ expression.  The U74Av2 probe arrays were subjected to U74A mask corrections, and all target hybridization intensities were scaled to 1500 arbitrary units using Microarray Suite 5.0 (Affymetrix). (Tze etal. Public Library of Science Biology, In Press 2005)
Raw data obtained from Affymetrix Suite 5.0 program with all arrays subjected to MG-U74A mask corrections and scaling to taget intensity of '1500'.  Listed are all probe sets excluding masked probe sets and Affymetrix hybridization control probe sets.
Keywords = bone marrow B cells


title: GFPneg-2

description:
Interleukin-7 expanded bone marrow immature B cells from anti-HEL immunoglobulin/Rag-2-GFP double transgenic mice were recultured in the absence of interleukin-7 for 1 day and sorted by FACS for surface IgM+ and GFPneg expression.  The U74Av2 probe arrays were subjected to U74A mask corrections, and all target hybridization intensities were scaled to 1500 arbitrary units using Microarray Suite 5.0 (Affymetrix). (Tze etal. Public Library of Science Biology, In Press 2005)
Raw data obtained from Affymetrix Suite 5.0 program with all arrays subjected to MG-U74A mask corrections and scaling to taget intensity of '1500'.  Listed are all probe sets excluding masked probe sets and Affymetrix hybridization control probe sets.
Keywords = bone marrow B cells


title: H2O2_II_63_min

description:
Simple annotation: Oxidative stress, H2O2
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40953.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.71; Parameter Scan Time = 18:03:15; Parameter PMT Volts = 510; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 20332; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.27; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.71; Parameter Scan Time = 18:03:15; Parameter PMT Volts = 750; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 19053; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.12; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-63 min after release from G1 arrest


title: H2O2_II_42_min

description:
Simple annotation: Oxidative stress, H2O2
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40950.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.43; Parameter Scan Time = 17:30:34; Parameter PMT Volts = 510; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 20299; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.60; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.43; Parameter Scan Time = 17:30:34; Parameter PMT Volts = 730; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 19021; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.10; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-42 min after release from G1 arrest


title: HEL Mhi-1


title: GFPneg-3


title: MD_II_63_min

description:
Simple annotation: Oxidative stress, Menadione
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40970.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.58; Parameter Scan Time = 15:09:40; Parameter PMT Volts = 500; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 20555; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.47; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.58; Parameter Scan Time = 15:09:40; Parameter PMT Volts = 740; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 19277; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.13; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira


title: FxE HA-5


title: FxE HA-6


title: GFPpos-3


title: FxE Ctrl-3

description:
Bone marrow cells from Bcl-2 transgenic mice were sorted by FACS for immature B cell population (B220+IgM+IgDneg) and cells were cultured for 1-2 days(s) in media.  The U74Av2 probe arrays were subjected to U74A mask corrections, and all target hybridization intensities were scaled to 1500 arbitrary units using Microarray Suite 5.0 (Affymetrix). (Tze etal. Public Library of Science Biology, In Press 2005)
Raw data obtained from Affymetrix Suite 5.0 program with all arrays subjected to MG-U74A mask corrections and scaling to taget intensity of '1500'.  Listed are all probe sets excluding masked probe sets and Affymetrix hybridization control probe sets.
Keywords = bone marrow B cells


title: FxE HA-2


title: FxE Ctrl-2


title: FxE Ctrl-1


title: HEL Mhi-2


title: GFPneg-1


title: FxE Ctrl-4


title: 2mM MD 055min

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-07/18424.gif

source_name: Cy5: experiment-0.63 OD


title: FxE HA-3


title: FxE-3

description:
Bone marrow cells from Balb/c mice were sorted by FACS for immature B cell population (B220+IgM+IgDneg).  The U74Av2 probe arrays were subjected to U74A mask corrections, and all target hybridization intensities were scaled to 1500 arbitrary units using Microarray Suite 5.0 (Affymetrix). (Tze etal. Public Library of Science Biology, In Press 2005)
Raw data obtained from Affymetrix Suite 5.0 program with all arrays subjected to MG-U74A mask corrections and scaling to taget intensity of '1500'.  Listed are all probe sets excluding masked probe sets and Affymetrix hybridization control probe sets.
Keywords = bone marrow B cells


title: FxE-1


title: FxE HA-1


title: FxE-2


title: 2mM MD 000min

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-07/18423.gif

source_name: Cy5: experiment-0.32 OD


title: 2mM MD 140min

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-07/18421.gif

source_name: Cy5: experiment-0.74 OD


title: FxD-3

description:
Bone marrow cells from Balb/c mice were sorted by FACS for preB cell population (B220+CD43negIgMneg).  The U74Av2 probe arrays were subjected to U74A mask corrections, and all target hybridization intensities were scaled to 1500 arbitrary units using Microarray Suite 5.0 (Affymetrix). (Tze etal. Public Library of Science Biology, In Press 2005)
Raw data obtained from Affymetrix Suite 5.0 program with all arrays subjected to MG-U74A mask corrections and scaling to taget intensity of '1500'.  Listed are all probe sets excluding masked probe sets and Affymetrix hybridization control probe sets.
Keywords = bone marrow B cells


title: Ctrl Mhi-4

description:
Interleukin-7 expanded bone marrow immature B cells from B1-8h/3-83(kappa) mice were recultured in the absence of interleukin-7 and in the presence of interferon-(alpha)(beta) for 2 days and sorted by FACS for surface IgM high expression.  The U74Av2 probe arrays were subjected to U74A mask corrections, and all target hybridization intensities were scaled to 1500 arbitrary units using Microarray Suite 5.0 (Affymetrix). (Tze etal. Public Library of Science Biology, In Press 2005)
Raw data obtained from Affymetrix Suite 5.0 program with all arrays subjected to MG-U74A mask corrections and scaling to taget intensity of '1500'.  Listed are all probe sets excluding masked probe sets and Affymetrix hybridization control probe sets.
Keywords = bone marrow B cells


title: GFPpos-2


title: Cre Mhi-3

description:
Interleukin-7 expanded bone marrow immature B cells from B1-8h/3-83(kappa)/Mx-Cre mice were recultured in the absence of interleukin-7 and in the presence of interferon-(alpha)(beta) for 2 days and sorted by FACS for surface IgM high expression.  The U74Av2 probe arrays were subjected to U74A mask corrections, and all target hybridization intensities were scaled to 1500 arbitrary units using Microarray Suite 5.0 (Affymetrix). (Tze etal. Public Library of Science Biology, In Press 2005)
Raw data obtained from Affymetrix Suite 5.0 program with all arrays subjected to MG-U74A mask corrections and scaling to taget intensity of '1500'.  Listed are all probe sets excluding masked probe sets and Affymetrix hybridization control probe sets.
Keywords = bone marrow B cells


title: Ctrl Mhi-2


title: Cre Mlo-3

description:
Interleukin-7 expanded bone marrow immature B cells from B1-8h/3-83(kappa)/Mx-Cre mice were recultured in the absence of interleukin-7 and in the presence of interferon-(alpha)(beta) for 2 days and sorted by FACS for surface IgM low expression.  The U74Av2 probe arrays were subjected to U74A mask corrections, and all target hybridization intensities were scaled to 1500 arbitrary units using Microarray Suite 5.0 (Affymetrix). (Tze etal. Public Library of Science Biology, In Press 2005)
Raw data obtained from Affymetrix Suite 5.0 program with all arrays subjected to MG-U74A mask corrections and scaling to taget intensity of '1500'.  Listed are all probe sets excluding masked probe sets and Affymetrix hybridization control probe sets.
Keywords = bone marrow B cells


title: Ctrl Mhi-1


title: Ctrl Mhi-3


title: FxD-1


title: day6-B

status: Public on Feb 01 2005

city: University Park

first: Ross

last: Hardison

state: PA

department: BMB

institute: The Pennsylvania State University

description: The protocol for RNA isolation, labelling and hybridization is detailed at http://hils.psu.edu/stf/dnama/Protocols.html.

source_name: 6 Days after HMBA induction

source_name: No HMBA induction (control)


title: Cre Mlo-4


title: Cre Mlo-1


title: FxD-2


title: Cre Mhi-4


title: B6 Mneg-1

description:
Interleukin-7 expanded bone marrow cells from C57BL/6 mice were sorted by FACS for surface B220+ and IgMneg population.  The U74Av2 probe arrays were subjected to U74A mask corrections, and all target hybridization intensities were scaled to 1500 arbitrary units using Microarray Suite 5.0 (Affymetrix). (Tze etal. Public Library of Science Biology, In Press 2005)
Raw data obtained from Affymetrix Suite 5.0 program with all arrays subjected to MG-U74A mask corrections and scaling to taget intensity of '1500'.  Listed are all probe sets excluding masked probe sets and Affymetrix hybridization control probe sets.
Keywords = bone marrow B cells


title: Cre Mlo-2


title: Cre Mhi-2


title: Cre Mhi-1


title: day4-B

source_name: 4 Days after HMBA induction


title: CA2

city: Tokyo

first: Fumiyuki

last: Uematsu

state: Tokyo

address: 2-2 Kanda-surugadai, Chiyoda

department: Department of Pathology

country: Japan

institute: Sasaki Institute

description: hepatocellular carcinoma from male Fischer344 rat fed choline-deficient, L-amino acid-defined diet for 70 w

organism: Rattus norvegicus

source_name: hepatocellular carcinoma


title: CA5


title: B6 Mneg-2


title: CA4


title: day3-B

source_name: 3 Days after HMBA induction


title: CA3


title: AFFS084-6-291004

status: Public on Feb 02 2005

city: Parkville

first: Ken

last: Simpson

state: Victoria

address: 1G Royal Parade

department: Genetics and Bioinformatics

institute: The Walter and Eliza Hall Institute

description:
SOCS3 null, replicate 2
Keywords = embryonic stem cells
Keywords = endoderm
Keywords = SHP2
Keywords = SOCS3
Keywords = leukemia inhibitory factor
Keywords = ERK1/2

source_name: embryonic stem cells


title: AFFS084-1-291004

description:
wildtype replicate 1
Keywords = embryonic stem cells
Keywords = endoderm
Keywords = SHP2
Keywords = SOCS3
Keywords = leukemia inhibitory factor
Keywords = ERK1/2


title: AFFS084-4-291004

description:
SOCS3 null, replicate 1
Keywords = embryonic stem cells
Keywords = endoderm
Keywords = SHP2
Keywords = SOCS3
Keywords = leukemia inhibitory factor
Keywords = ERK1/2


title: AFFS084-2-291004

description:
wildtype replicate 2
Keywords = embryonic stem cells
Keywords = endoderm
Keywords = SHP2
Keywords = SOCS3
Keywords = leukemia inhibitory factor
Keywords = ERK1/2


title: day2-B

source_name: 2 Days after HMBA induction


title: 202b

city: Tuebingen

first: Javier

middle: Fernando

last: Palatnik

address: 37-39 Spemannstrasse

department: Molecular Biology

country: Germany

institute: Max Planck Institute

description: jaw-D mutant expanded leaves grown in short days.

organism: Arabidopsis thaliana

source_name: jaw-D SD leaves


title: day5-B

source_name: 5 Days after HMBA induction


title: day0-B


title: day6-A


title: NC5

description: non-cancerous, cirrhotic liver tissues surrounding hepatocellular carcinoma from male Fischer344 rat fed choline-deficient, L-amino acid-defined diet for 70 w

source_name: non-cancerous liver


title: NC3


title: 201a

description: Columbia expanded leaves grown in short days.

source_name: columbia leaves SD


title: NC4


title: day5-A


title: 202a


title: 201b


title: NC2


title: CA1


title: day4-A


title: 226b

description: RNA was extracted from vegetative apices of 7d-old short-day grown plants overexpressing miR172a (Col-0 background).

source_name: vegetative apex


title: 225b

description: RNA was extracted from vegetative apices of 7d-old short-day grown plants overexpressing miR164b (Col-0 background).


title: NC1


title: 223a

description: RNA was extracted from vegetative apices of 7d-old short-day grown Columbia plants tranformed with empty pML_Bart plasmid.


title: 223b


title: day3-A


title: CON4

description: normal liver from male Fischer344 rat fed basal diet for 70 w

source_name: normal liver


title: 225a


title: 222b

description: RNA was harvested from floral apices of long-day grown plants overexpressing miR164b (Col-0 background)

source_name: floral apex


title: 226a


title: 222a


title: 220b

description: RNA was harvested from floral apices of long-day grown Columbia plants transformed with empty pML_Bart plasmid


title: 221b

description: RNA was harvested from floral apices of long-day grown plants overexpressing miR156b (Col-0 background)


title: CON5


title: day2-A

description: The protocol for RNA isolation, labelling and hybridization is detailed at http://hils.psu.edu/stf/dnama/Protocols.html.


title: day0-A


title: day1-A

source_name: 1 Day after HMBA induction


title: CON1

description: normal liver from male Fischer rat fed basal diet for 70 w


title: 221a


title: 220a


title: 231c

description: RNA was isolated from flowers stage 15 form col plants.

source_name: columbia flowers


title: CON3


title: CON2


title: 232b

description: RNA was isolated from flowers stage 15 from 159a overexpressor.

source_name: flowers


title: 232a

description: RNA was isolated from flowers stage 15 form transgenics overexpressing miR159a.

source_name: Flowers of miR159a overexpressers


title: 232_c


title: 231b

source_name: Columbia flowers


title: 231a

description: RNA was isolated from flowers stage 15.


title: R1 ES cells

status: Public on Jan 29 2005

city: Edinburgh

first: Tilo

last: Kunath

address: 5 LIttle France Drive

department: Centre for Regenerative Medicine

country: United Kingdom

institute: University of Edinburgh

description:
Undifferentiated R1 ES cells grown on gelatin in the presence of LIF
Keywords = ES cells

source_name: mouse ES cells


title: PEC: TAM-8 untreated

status: Public on Jan 31 2005

city: Frederick

first: Lisa

middle: M

last: Gangi

state: MD

address: 915 Tollhouse Ave

department: LMT-Frederick

institute: NCI

description:
mAdb experiment ID: 42984
Peritoneal exudate cells and tumor associated macrophages were harvested from mice 3 weeks following tumor implantation and adherent cells were maintained in culture .
Array Print: Mm_FCRF_GEM2_v9p2_110202
cell_type: peritoneal and tumor associated macrophages
Mouse strain: C57/6N black 8weeks
treatment_agent: none
treatment_dose: N/A
treatment_time: N/A

source_name: PEC Untreated

source_name: TAM Untreated


title: PEC: TAM-3 untreated

description:
mAdb experiment ID: 35402
Peritoneal exudate cells and tumor associated macrophages were harvested from mice 3 weeks following tumor implantation and adherent cells were maintained in culture .
Array Print: Mm_FCRF_GEM2_v3p6_111501
cell_type: peritoneal and tumor associated macrophages
Mouse strain: C57/6N black 8weeks
treatment_agent: none
treatment_dose: N/A
treatment_time: N/A


title: TAM: TAM-16 LPS

description:
mAdb experiment ID: 33176
Tumor associated macrophages were harvested from mice 3 weeks following tumor implantation and adherent cells were maintained in culture and treated with and without LPS for 4 hours.
Array Print: Mm_FCRF_GEM2_v3p6_111501
cell_type: tumor associated macrophages
Mouse strain: C57/6N black 8weeks
treatment_agent: LPS
treatment_dose: 100 ng/mL
treatment_time: 4 hours

source_name: TAM LPS


title: PEC: TAM7 LPS

description:
mAdb experiment ID: 42512
Peritoneal exudate cells and tumor associated macrophages were harvested from mice 3 weeks following tumor implantation and adherent cells were maintained in culture and treated with LPS for 4 hours.
Array Print: Mm_FCRF_GEM2_v9p2_110202
cell_type: peritoneal and tumor associated macrophages
Mouse strain: C57/6N black 8weeks
treatment_agent: LPS
treatment_dose: 100 ng/mL
treatment_time: 4 hours

source_name: PEC LPS


title: TAM: TAM-trial LPS

description:
mAdb experiment ID: 41394
Tumor associated macrophages were harvested from mice 3 weeks following tumor implantation and adherent cells were maintained in culture and treated with and without LPS for 4 hours.
Array Print: Mm_FCRF_GEM2_v9p2_110202
cell_type: tumor associated macrophages
Mouse strain: C57/6N black 8weeks
treatment_agent: LPS
treatment_dose: 100 ng/mL
treatment_time: 4 hours


title: IM8A1-II

description:
Extraembryonic endoderm cells IM8A1 passage 27, PO strain. Cultured on tissue culture plastic for 4 days in RPMI 1640/20%FBS
Keywords = XEN cells

source_name: mouse XEN cells


title: IM8A1-I

description:
Extraembryonic endoderm cells IM8A1 passage 27, PO strain. Cultured on gelatin in 70% EMFI-CM
Keywords = XEN cells


title: TMRI E2 48hr

status: Public on Jan 28 2005

city: Sharnbrook

first: Fei Ling

last: Lim

state: Bedfordshire

address: Colworth Science Park

institute: Unilever

description:
Immature (19/20 days of age) Alpk:APfCD-1 mice were treated with arachis oil (AO) vehicle or 0.4mg/kg 17beta-estradiol (E2), via a single subcutaneous injection, and sacrificed at 1hr, 2hr, 4hr, 8hr, 24hr, 48hr, 72hr post dose.
Keywords = estrogen
Keywords = gene expression
Keywords = microarray
Keywords = phenotypic anchoring
Keywords = uterus

source_name: uterus


title: TMRI AO 72hr


title: XEN1-3

description:
Extraembryonic endoderm cells XEN1-3 passage 18, ICR strain. Cultured on gelatin in 70% EMFI-CM
Keywords = XEN cells


title: TMRI AO 8hr


title: PEC: TAM1 LPS

description:
mAdb experiment ID: 34254
Peritoneal exudate cells and tumor associated macrophages were harvested from mice 3 weeks following tumor implantation and adherent cells were maintained in culture and treated with LPS for 4 hours.
Array Print: Mm_FCRF_GEM2_v3p6_111501
cell_type: peritoneal and tumor associated macrophages
Mouse strain: C57/6N black 8weeks
treatment_agent: LPS
treatment_dose: 100 ng/mL
treatment_time: 4 hours


title: PEC2 untreated: PEC LPS

description:
mAdb experiment ID: 34255
Peritoneal exudate cells were harvested from mice and adherent cells were maintained in culture with and without LPS treatment.
Array Print: Mm_FCRF_GEM2_v3p6_111501
cell_type: peritoneal macrophages
Mouse strain: C57/6N black 8weeks
treatment_agent: LPS
treatment_dose: 100 ng/mL
treatment_time: 4 hours

source_name: PEC +LPS


title: TMRI E2 2hr


title: TMRI AO 24hr


title: TMRI E2 72hr


title: TMRI AO 4hr


title: PEC1 untreated: PEC LPS

description:
mAdb experiment ID: 31511
Peritoneal exudate cells were harvested from mice and adherent cells were maintained in culture with and without LPS treatment.
Array Print: Mm_FCRF_GEM2_v1p1_062601
cell_type: peritoneal macrophages
Mouse strain: C57/6N black 8weeks
treatment_agent: LPS
treatment_dose: 100 ng/mL
treatment_time: 4 hours


title: TMRI E2 4hr


title: TMRI AO 48hr


title: PEC: TAM-2R untreated

description:
mAdb experiment ID: 35119
Peritoneal exudate cells and tumor associated macrophages were harvested from mice 3 weeks following tumor implantation and adherent cells were maintained in culture .
Array Print: Mm_FCRF_GEM2_v3p6_111501
cell_type: peritoneal and tumor associated macrophages
Mouse strain: C57/6N black 8weeks
treatment_agent: none
treatment_dose: N/A
treatment_time: N/A


title: PEC: TAM-b untreated

description:
mAdb experiment ID: 33374
Peritoneal exudate cells and tumor associated macrophages were harvested from mice 3 weeks following tumor implantation and adherent cells were maintained in culture .
Array Print: Mm_FCRF_GEM2_v3p6_111501
cell_type: peritoneal and tumor associated macrophages
Mouse strain: C57/6N black 8weeks
treatment_agent: none
treatment_dose: N/A
treatment_time: N/A


title: TMRI E2 8hr


title: TMRI E2 24hr


title: CTL2 E2 72hr


title: TMRI AO 1hr


title: TMRI E2 1hr


title: TMRI AO 2hr


title: CTL2 AO 24hr


title: CTL2 AO 48hr


title: CTL2 AO 8hr


title: CTL2 AO 72hr


title: CTL2 E2 8hr


title: CTL2 E2 24hr


title: CTL2 AO 4hr


title: PPARg d10, rep 2

city: Lund

first: Robert

last: Månsson

address: Klinikgatan 26, BMC B12

department: Hematopoietic stem cell biology

country: Sweden

institute: Lund Stem Cell Center

description:
NIH-3T3 cells transduced with either EBF1-, PPARg2- or empty vector were stimulated with hormones to initiate adipocyte differentiation. RNA extraction was done using TriZol at d0, d2, d4 and d10 after stimulation. Samples were handled according to standard affymetrix protocols. 7 independent stimulation experiments were analysed.
Keywords = Adipogenesis, early B-cell factor 1 (EBF1), commitment, differentiation, NIH-3T3, pparg

source_name: transduced NIH-3T3 cellline


title: CTL2 E2 48hr


title: EBF1 d10, rep 1


title: CTL2 E2 2hr


title: EBF1 d10, rep 2


title: CTL2 AO 2hr


title: CTL2 E2 1hr


title: vector d10, rep 3


title: PPARg d10, rep 3


title: vector d10, rep 1


title: CTL2 AO 1hr


title: PPARg d10, rep 1


title: EBF1 d4, rep 4


title: EBF1 d4, rep 3


title: CTL2 E2 4hr


title: EBF1 d4, rep 7


title: vector d10, rep 2


title: EBF1 d4, rep 5


title: EBF1 d4, rep 6


title: EBF1 d4, rep 2


title: PPARg d4, rep 7


title: PPARg d4, rep 5


title: PPARg d4, rep 1


title: PPARg d4, rep 4


title: PPARg d4, rep 6


title: PPARg d4, rep 2


title: EBF1 d2, rep 2


title: vector d4, rep 7


title: EBF1 d2, rep 1


title: vector d4, rep 2


title: vector d4, rep 4


title: vector d4, rep 3


title: vector d4, rep 1


title: PPARg d4, rep 3


title: vector d4, rep 6


title: PPARg d2, rep 1


title: vector d2, rep 4


title: EBF1 d0, rep 3


title: vector d2, rep 1


title: vector d4, rep 5


title: EBF1 d0, rep 4


title: PPARg d2, rep 3


title: EBF1 d2, rep 4


title: vector d2, rep 3


title: PPARg d2, rep 2


title: PPARg d2, rep 4


title: EBF1 d4, rep 1


title: EBF1 d2, rep 3


title: EBF1 d0, rep 2


title: PPARg d0, rep 4


title: PPARg d0, rep 3


title: PPARg d0, rep 2


title: vector d0, rep 3


title: vector d0, rep 4


title: EBF1 d0, rep 1


title: vector d0, rep 1


title: M201SE+RT Swap dye-Raw

city: Columbia

first: Sachin

middle: S

last: Bhusari

state: MO

address: 920 East Campus Drive

department: Animal Sciences

institute: Univ of Missouri

description:
M201 belongs to group of mice fed endophtye-infected fescue diet (E+). This is the third technical replicate of M201. This was done in swap dye fashion.
Keywords = Endophyte
Keywords = fescue

source_name: RNA from universal mouse reference RNA

source_name: RNA from M201 fed endophyte-infected fescue diet.


title: M201SE+RT 1st Rep- Raw

description:
M201 belongs to group of mice fed endophtye-infected fescue diet (E+). This is the first replicate of M201.
Keywords = Endophyte
Keywords = fescue

source_name: RNA from M201 mouse fed E+ diet.


title: M201SE+RT 2nd Rep- Raw

description:
M201 belongs to group of mice fed endophtye-infected fescue diet (E+). This is the second technical replicate of M201.
Keywords = Endophyte
Keywords = fescue

source_name: RNA from M201 mouse fed endophyte-infected fescue diet


title: F242SE+RT swap dye-raw

description:
F242 belongs to group of mice fed endophyte-infected fescue diet (E+) at thermoneutral conditions. This is the second technical replicate done in swap dye fashion.
Keywords = Endophyte
Keywords = Fescue

source_name: RNA from F242 mouse fed the E+ diet


title: F212SE+RT swap dye-raw

description:
F212 belongs to group of mice fed endophyte-infected fescue diet (E+) at thermoneutral conditions. This  replicate is done in swap dye fashion.
Keywords = Endophyte
Keywords = Fescue

source_name: RNA from universal mouse reference RNA.

source_name: RNA from F212 mouse fed E+ diet.


title: F202SE+RT 1st Rep-Raw

description:
F202 belongs to group of mice fed endophtye-infected fescue diet (E+). This is the first technical replicate of F202.
Keywords = Endophyte
Keywords = fescue

source_name: RNA from F202 mouse fed with endophyte-infected fescue diet


title: M257SE+RT swap dye-raw

description:
M257 belongs to group of mice fed endophtye-infected fescue diet (E+). This is a swap dye done for M257 mouse.
Keywords = Endophyte
Keywords = fescue

source_name: mRNA from universal mouse reference RNA

source_name: mRNA from M257 mouse fed Endophyte-infected diet


title: F202SE+RT swap dye-raw

description:
F202 belongs to group of mice fed endophtye-infected fescue diet (E+). This is the third technical replicate of F202 done in swap dye design.
Keywords = Endophyte
Keywords = fescue

source_name: RNA from F202 mouse fed E+ diet.


title: F242-Cy5, F201-Cy3 loop hybridization-raw

description:
F242 belongs to group of mice fed endophyte-infected fescue diet (E+) at thermoneutral conditions. This is the first technical replicate done in loop design. The data from this hybridization was used in ANOVA analysis.
Keywords = Endophyte
Keywords = Fescue

source_name: RNA from F242 mouse fed E+ diet at thermoneutral

source_name: RNA from F201 mouse fed E+ diet at heat stress


title: M257SE+RT-Raw

description:
Mice belongs to E+ group which were fed endophyte-infected fescue diet at themonuetral conditions.
Keywords = Fescue toxins
Keywords = endophyte

source_name: Mouse M257 fed with Fescue toxins.

source_name: Universal Mouse Reference RNA.


title: M222SE+RT swap dye-raw

description:
M222 belongs to group of mice fed endophyte-infected fescue diet (E+) at thermoneutral conditions. This is the second technical replicate done in swap dye fashion.
Keywords = Endophyte
Keywords = Fescue

source_name: RNA from M222 mouse fed the E+diet.


title: M257SE+RT 2nd Rep-Raw

description:
M257 belongs to group of mice fed endophtye-infected fescue diet (E+).
Keywords = Endophyte
Keywords = fescue

source_name: mRNA from mouse M257 fed with endophyte-infected fescue diet (E+).

source_name: mRNA from Universal mouse reference RNA.


title: F202SE+RT 2nd Rep-Raw

description:
F202 belongs to group of mice fed endophtye-infected fescue diet (E+). This is the second technical replicate of F202.
Keywords = Endophyte
Keywords = fescue

source_name: RNA from universal mouse reference RNA


title: Cisplatin treatment in H460 #2

status: Public on Jan 27 2005

city: Seoul

first: Se Nyun

last: Kim

country: South Korea

institute: Digital Genomics, Inc.

description: For Ch1, RNA was prepared from H460 cells treated with 5 micromolar cisplatin for 24 hours.  For Ch2, RNA was prepared from untreated H460 cells.

organism: Homo sapiens

source_name: H460 human lung cancer cell line treated with 5micromolar cisplatin

source_name: H460 human lung cancer cell line


title: Cisplatin treatment in H460


title: Cytarabin treatment in H460 #2

description: For Ch1, RNA was prepared from H460 cells treated with 0.2micromolar cytarabin for 24 hours.  For Ch2, RNA was prepared from untreated H460 cells.

source_name: H460 human lung cancer cell line treated with 0.2micromolar cytarabin


title: Paclitaxel treatment in H460

description: For Ch1, RNA was prepared from H460 cells treated with 5 nanomolar paclitaxel for 24 hours.  For Ch2, RNA was prepared from untreated H460 cells.

source_name: H460 human lung cancer cell line treated with 5nanoomolar paclitaxel


title: 5-FU treatment in H460 #2-r

description: For Ch1, RNA was prepared from H460 cells treated with 1micromolar 5-fluorouracil for 24 hours. For Ch2, RNA was prepared from untreated H460 cells.

source_name: H460 human lung cancer cell line treated with 1micromolar 5-fluorouracil


title: Cytarabin treatment in H460


title: Cytochalasin D treatment in H460

description: For Ch1, RNA was prepared from H460 cells treated with 0.2 micromolar cytochalasin D for 24 hours.  For Ch2, RNA was prepared from untreated H460 cells.

source_name: H460 human lung cancer cell line treated with 0.2 micromolar cytochalasin D


title: Paclitaxel treatment in H460 #2


title: Cytochalasin D treatment in H460 #2


title: 5-FU treatment in H460 #2

description: For Ch1, RNA was prepared from untreated H460 cells.  For Ch2, RNA was prepared from H460 cells treated with 1micromolar 5-fluorouracil for 24 hours.

source_name: H460 human lung cancer cell line treated with 1microM 5-fluorouracil


title: 5-FU treatment in H460 #1-r


title: vector d2, rep 2

description:
NIH-3T3 cells transduced with either EBF1-, PPARg2- or empty vector were stimulated with hormones to initiate adipocyte differentiation. RNA extraction was done using TriZol at d0, d2, d4 and d10 after stimulation. Samples were handled according to standard affymetrix protocols. 7 independent stimulation experiments were analysed.
Keywords = Adipogenesis, early B-cell factor 1 (EBF1), commitment, differentiation, NIH-3T3, pparg

source_name: transduced NIH-3T3 cellline


title: M222SE+RT 1st Rep-Raw

description:
M222 belongs to group of mice fed endophyte-infected fescue diet (E+) at thermoneutral conditions. This is the first technical replicate done.
Keywords = Endophyte
Keywords = Fescue

source_name: RNA from M222 mouse fed E+ diet.


title: 5-FU treatment in H460 #1


title: PPARg d0, rep 1


title: vector d0, rep 2


title: 8 day high Fe group 2 (RAE230B)

status: Public on Jan 26 2005

city: Tucson

first: James

middle: Forrest

last: Collins

state: AZ

address: PO Box 245073, 1501 N. campbell Ave.

department: Pediatrics

institute: University of Arizona Health Sciences Center

description: rat duodenum

source_name: rat duodenum


title: 21 day low Fe group 2 (RAE230B)

description: rat duodenum


title: 21 day high Fe group 2 (RAE230B)

description: rat duodenum


title: 8 day low Fe group 2 (RAE230B)

description: rat duodenum


title: 21 day low Fe group 1 (RAE230B)

description: rat duodenum


title: 21 day low Fe group 3 (RAE230B)

description: rat duodenum


title: 6 week low Fe group 3 (RAE230B)

description: rat duodenum


title: 8 day low Fe group 1 (RAE230B)

description: rat duodenum


title: 8 day high Fe group 1 (RAE230B)

description: rat duodenum


title: 8 day high Fe group 3 (RAE230B)

description: rat duodenum


title: 21 day high Fe group 3 (RAE230B)

description: rat duodenum


title: 21 day high Fe group 1 (RAE230B)

description: rat duodenum


title: 12 week low Fe group 3 (RAE230B)

description: rat duodenum


title: 12 week low Fe group 2 (RAE230B)

description: rat duodenum


title: 6 week low Fe group 2 (RAE230B)

description: rat duodenum


title: 6 week high Fe group 2 (RAE230B)

description: rat duodenum


title: 6 week high Fe group 3 (RAE230B)

description: rat duodenum


title: d4Lin+-A-1

city: Toronto

first: Daniel

last: Kirouac

state: Ontario

department: Biomaterials and Biomedical Engineering

country: Canada

institute: University of Toronto

description: Umbilical cord blood was lineage depelted using a stemsep column and cultured in serum free liquid culture for 4 days with cytokines SCF, FL, and Tpo.  Lin+ cells were removed from culture at day-4 using a Stemsep column, and RNA was extracted for analysis.

source_name: cultured cord blood progenitors


title: 6 week high Fe group 1 (RAE230B)

description: rat duodenum


title: d5E-A-2

description: Umbilical cord blood was lineage depelted using a stemsep column and cultured in serum free liquid culture for 5 days with cytokines SCF, FL, and Tpo.  Meida exchange was performed at day-4.  2 of 3 replicates.


title: 6 week low Fe group 1 (RAE230B)

description: rat duodenum


title: d5E-A-3

description: Umbilical cord blood was lineage depelted using a stemsep column and cultured in serum free liquid culture for 5 days with cytokines SCF, FL, and Tpo.  Meida exchange was performed at day-4.  3 of 3 replicates.


title: 36 week low Fe group 1 (RAE230B)

description: rat duodenum


title: 12 week high Fe group 2 (RAE230B)

description: rat duodenum


title: 12 week low Fe group 1 (RAE230B)

description: rat duodenum


title: 36 week low Fe group 3 (RAE230B)

description: rat duodenum


title: d5NE-A-3

description: Umbilical cord blood was lineage depelted using a stemsep column and cultured in serum free liquid culture for 5 days with cytokines SCF, FL, and Tpo.  3 of 3 replicates.


title: 12 week high Fe group 3 (RAE230B)

description: rat duodenum


title: d5E-A-1

description: Umbilical cord blood was lineage depelted using a stemsep column and cultured in serum free liquid culture for 5 days with cytokines SCF, FL, and Tpo.  Meida exchange was performed at day-4.  1 of 3 replicates.


title: 12 week high Fe group 1 (RAE230B)

description: rat duodenum


title: 36 week low Fe group 2 (RAE230B)

description: rat duodenum


title: 36 week high Fe group 3 (RAE230B)

description: rat duodenum


title: 8 day low Fe group 3 (RAE230B)

description: rat duodenum


title: d5NE-A-1

description: Umbilical cord blood was lineage depelted using a stemsep column and cultured in serum free liquid culture for 5 days with cytokines SCF, FL, and Tpo.  1 of 3 replicates.


title: 36 week low Fe group 3 (RAE230A)

description: rat duodenum


title: AML 14735

city: Salamanca

first: Norma

middle: Carmen

last: Gutierrez

department: Hematology

country: Spain

institute: University Hospital

description:
Bone marrow (BM) samples from 43 adult patients with newly de novo diagnosed AML All samples contained more than 80% blast cells.
FAB/WHO classification = M0/AML, minimally differentiated

source_name: Bone marrow


title: d5NE-A-2

description: Umbilical cord blood was lineage depelted using a stemsep column and cultured in serum free liquid culture for 5 days with cytokines SCF, FL, and Tpo.  2 of 3 replicates.


title: AML 17273

description:
Bone marrow (BM) samples from 43 adult patients with newly de novo diagnosed AML All samples contained more than 80% blast cells.
FAB/WHO classification = M2/AML with maturation


title: 36 week high Fe group 2 (RAE230B)

description: rat duodenum


title: d4-A-2

description: Umbilical cord blood was lineage depelted using a stemsep column and cultured in serum free liquid culture for 4 days with cytokines SCF, FL, and Tpo.  2 of 3 replicates.


title: d4-A-3

description: Umbilical cord blood was lineage depelted using a stemsep column and cultured in serum free liquid culture for 4 days with cytokines SCF, FL, and Tpo.  3 of 3 replicates.


title: AML 16942

description:
Bone marrow (BM) samples from 43 adult patients with newly de novo diagnosed AML All samples contained more than 80% blast cells.
FAB/WHO classification = M1/AML without maturation


title: 36 week high Fe group 3 (RAE230A)

description: rat duodenum


title: 12 week low Fe group 3 (RAE230A)

description: rat duodenum


title: AML 7297

description:
Bone marrow (BM) samples from 43 adult patients with newly de novo diagnosed AML All samples contained more than 80% blast cells.
FAB/WHO classification = M6/Acute erythroid leukemia


title: 36 week high Fe group 1 (RAE230A)

description: rat duodenum


title: AML 9376


title: AML 16973


title: AML 10232

description:
Bone marrow (BM) samples from 43 adult patients with newly de novo diagnosed AML All samples contained more than 80% blast cells.
FAB/WHO classification = M4/Acute myelomonocytic leukemia


title: 36 week low Fe group 1 (RAE230A)

description: rat duodenum


title: AML 11567


title: 36 week low Fe group 2 (RAE230A)

description: rat duodenum


title: 12 week low Fe group 2 (RAE230A)

description: rat duodenum


title: 36 week high Fe group 1 (RAE230B)

description: rat duodenum


title: AML 170


title: AML 17099


title: AML 16221


title: AML 9875


title: 36 week high Fe group 2 (RAE230A)

description: rat duodenum


title: 12 week low Fe group 1 (RAE230A)

description: rat duodenum


title: AML 12570


title: AML 15833


title: 12 week high Fe group 2 (RAE230A)

description: rat duodenum


title: AML 10557


title: 12 week high Fe group 3 (RAE230A)

description: rat duodenum


title: AML 6209


title: AML 14698


title: 6 week high Fe group 2 (RAE230A)

description: rat duodenum


title: 6 week low Fe group 1 (RAE230A)

description: rat duodenum


title: 6 week high Fe group 3 (RAE230A)

description: rat duodenum


title: AML 15443


title: 12 week high Fe group 1 (RAE230A)

description: rat duodenum


title: 6 week low Fe group 3 (RAE230A)

description: rat duodenum


title: 6 week low Fe group 2 (RAE230A)

description: rat duodenum


title: AML 14399


title: AML 13850

description:
Bone marrow (BM) samples from 43 adult patients with newly de novo diagnosed AML All samples contained more than 80% blast cells.
FAB/WHO classification = M5/Acute monoblastic/monocytic leukemia


title: AML 14043


title: 21 day low Fe group 3 (RAE230A)

description: rat duodenum


title: AML 13451


title: 6 week high Fe group 1 (RAE230A)

description: rat duodenum


title: AML 12361


title: AML 139


title: 21 day low Fe group 1 (RAE230A)

description: rat duodenum


title: AML 6667


title: AML 13296


title: 21 day high Fe group 3 (RAE230A)

description: rat duodenum


title: AML 13774


title: 8 day low Fe group 2 (RAE230A)

description: rat duodenum


title: 8 day low Fe group 3 (RAE230A)

description: rat duodenum


title: 21 day high Fe group 1 (RAE230A)

description: rat duodenum


title: AML 13701


title: 21 day high Fe group 2 (RAE230A)

description: rat duodenum


title: 8 day high Fe group 3 (RAE230A)

description: rat duodenum


title: 8 day high Fe group 2 (RAE230A)

description: rat duodenum


title: AML 355

description:
Bone marrow (BM) samples from 43 adult patients with newly de novo diagnosed AML All samples contained more than 80% blast cells.
FAB/WHO classification = M4Eo/Acute myeloid leukemia (AML) with abnormal bone marrow eosinophils and inv(16)


title: AML 7644


title: AML 9949


title: 8 day low Fe group 1 (RAE230A)

description: rat duodenum


title: AML 185


title: AML 17074

description:
Bone marrow (BM) samples from 43 adult patients with newly de novo diagnosed AML All samples contained more than 80% blast cells.
FAB/WHO classification = M3/Acute promyelocytic leukemia (APL) with t(15;17)


title: 8 day high Fe group 1 (RAE230A)

description: rat duodenum


title: Reference hybridization R5

city: Milwaukee

first: David

middle: P.

last: Basile

state: WI

address: 8701 Watertown Plank

department: Physiology

institute: Medical College of Wisconsin

description: This file contains the raw data and the normalized log values of each element of the hybridization platform for an experiment in which rat kidney gene expression is compared in sham-operated animals vs. animals following 35 days of recovery from 52 min of ischemia/reperfusion.

source_name: Sham Rat C total kidney

source_name: Sham Rat F total kidney


title: AML 16739


title: AML 10981


title: Reference Hybridization R6

source_name: Sham Rat D total kidney

source_name: Sham Rat E total kidney


title: AML 16089

description:
Bone marrow (BM) samples from 43 adult patients with newly de novo diagnosed AML All samples contained more than 80% blast cells.
FAB/WHO classification = M3/Acute promyelocytic leukemia (APL) with t(15;17


title: NOD

city: Cincinnati

first: Jonathan

middle: D

last: Katz

state: OH

address: 3333 Burnet Avenue

department: Division of Endocrinology

institute: Cincinnati Children's Hospital Research Foundation

description:
pancreas from 3 week old NOD mouse.  RNA was extracted by GITC method. Targets were produced using standard Affymetrix procedures from about 10ug of total RNA.  RNA was isolated twice from 6 animals each and pooled.
Pancreas
Keywords = NOD, pancreas

source_name: pancreas


title: NOD1


title: Reference hybridization R4

source_name: Sham Rat B total kidney


title: NOD.scid

description:
pancreas from 3 week old NOD.scid mouse.  RNA was extracted by GITC method. Targets were produced using standard Affymetrix procedures from about 10ug of total RNA.  RNA was isolated twice from 6 animals each and pooled.
Pancreas
Keywords = NOD.scid, pancreas


title: AML 14217


title: AML 14398


title: Hybridization F2 cy5 sham

source_name: ARF Rat F total kidney


title: Reference hybridization R3


title: Reference Hybridization R1

source_name: Sham Rat A total kidney


title: Hybridization F1 cy3 sham


title: AML 13223


title: AML 13058


title: AML 12366


title: NOD.scid1


title: BDC2.5/NOD.scid_1

description:
pancreas from 3 week old BDC2.5/NOD.scid mouse.  RNA was extracted by GITC method. Targets were produced using standard Affymetrix procedures from about 10ug of total RNA.  RNA was isolated twice from 6 animals each and pooled.
Pancreas
Keywords = BDC2.5/NOD.scid, pancreas


title: Hybridization D2 cy5 sham

source_name: ARF Rat D total kidney


title: AML 5204


title: Hybridization E1 cy3 sham

source_name: ARF Rat E total kidney


title: AML 10222


title: Hybridization D1 cy3 sham


title: Hybridization A2 cy5 sham

source_name: ARF Rat A total kidney


title: Hybridization B2 cy5 sham

source_name: ARF Rat B total kidney


title: Hybridization C2 cy5 sham

source_name: ARF Rat C total kidney


title: Hybridization B1 cy3 sham


title: Xenograft tumor: 13R cy5(r) A549 cell co-hybridized with Universal cDNA

status: Public on Jan 25 2005

city: Menlo Park

middle: J

last: Chin

institute: PPD Discovery

description:
cells were grown with 10% fetal calf serum in Dulbecco's modified Eagle's medium at 37 degrees C in 5% C02
total RNA was harvested from 4 x 106 cells using a High Pure RNA isolation kit (Roche Applied Science) according to manufacturer's instructions. For xenografts, tumors were were excised 22-29 days post-implantation under accredited procedures (Piedmont Research Center, Morrisville, NC), snap-frozen in liquid nitrogen and stored at -80 degrees C until use.  Total RNA was prepaed from frozen specimens by 24 hr immersion at -80 degrees C in RNAlater-ICE (Ambion) to 'transition' solid tumors for subsequent homogenization by grinding with a liquid nitrogen-chilled mortar/pestle, followed by resuspension in Trizol.
cDNA from parental cells, Human Universal RNA and xenografts was generated with amino-allyl dUTP using a modified Agilent Fluorescent Direct Label kit. The cDNA was purified with QIAquick PCR columns and coupled to either N-hydroxysuccinimidyl-esterified Cy3 or Cy5 dyes. Dye-conjugated cDNAs were purified from free dye using the CyScribe GFX purification kit (Amersham). Arrays were hybridized for 16 hr at 60 degrees C using an Agilent In Situ Hybridization kit.
Keywords = xenograft tumors

source_name: 13R cy3(g) Universal RNA

source_name: 13R cy5(r) A549 cell


title: BDC2.5/NOD.scid


title: Xenograft tumor: 15L cy5(r) Universal RNA co-hybridized with Universal cDNA

source_name: 15L cy3(g) A549 cell

source_name: 15L cy5(r) Universal RNA


title: Xenograft tumor: 15R cy5(r) A549 cell co-hybridized with Universal cDNA

source_name: 15R cy3(g) Universal RNA

source_name: 15R cy5(r) A549 cell


title: Hybridization C1 cy3 sham

source_name: Sham Rat C total kidney


title: Xenograft tumor: 07R cy5(r) HCT116 cell co-hybridized with Universal cDNA

source_name: 07R cy3(g) Universal RNA

source_name: 07R cy5(r) HCT116 cell


title: Xenograft tumor: 06R cy5(r) HCT116 cell co-hybridized with Universal cDNA

source_name: 06R cy3(g) Universal RNA

source_name: 06R cy5(r) HCT116 cell


title: Hybridization A1 cy3 sham

description:
This file contains the raw data and the normalized log values of each element of the hybridization platform for an experiment in which rat kidney gene expression is compared in sham-operated animals vs. animals following 35 days of recovery from 52 min of ischemia/reperfusion.

These data refer to the comparison of 1 of 6 sham vs. ARF rat pairs used in the study.

The proceedures for detecting spot quality and detection, and adjustment of low intensity
signals has been described in the following reference:
Liang et al.,Physiological Genomics 8 (2):139-49, 2002.

The raw data included here are from Imagene 4.1.

source_name: Sham Rat A total kidney


title: Xenograft tumor: 07L cy5(r) Universal RNA co-hybridized with Universal cDNA

source_name: 07L cy3(g) HCT116 cell

source_name: 07L cy5(r) Universal RNA


title: Xenograft tumor: 06L cy5(r) Universal RNA co-hybridized with Universal cDNA

source_name: 06L cy3(g) HCT116 cell

source_name: 06L cy5(r) Universal RNA


title: Xenograft tumor: 08R cy5(r) HCT116 cell co-hybridized with Universal cDNA

source_name: 08R cy3(g) Universal RNA

source_name: 08R cy5(r) HCT116 cell


title: Xenograft tumor: 08L cy5(r) Universal RNA co-hybridized with Universal cDNA

source_name: 08L cy3(g) HCT116 cell

source_name: 08L cy5(r) Universal RNA


title: Xenograft tumor: 09R cy5(r) HCT116 cell co-hybridized with Universal cDNA

source_name: 09R cy3(g) Universal RNA

source_name: 09R cy5(r) HCT116 cell


title: Xenograft tumor: 10R cy5(r) HCT116 cell co-hybridized with Universal cDNA

source_name: 10R cy3(g) Universal RNA

source_name: 10R cy5(r) HCT116 cell


title: Xenograft tumor: 10L cy5(r) Universal RNA co-hybridized with Universal cDNA

source_name: 10L cy3(g) HCT116 cell

source_name: 10L cy5(r) Universal RNA


title: Xenograft tumor: 11L cy5(r) Universal RNA co-hybridized with Universal cDNA

source_name: 11L cy3(g) HCT116 cell

source_name: 11L cy5(r) Universal RNA


title: Xenograft tumor: 09L cy5(r) Universal RNA co-hybridized with Universal cDNA

source_name: 09L cy3(g) HCT116 cell

source_name: 09L cy5(r) Universal RNA


title: Xenograft tumor: 12R cy5(r) MDA-MB231 cell co-hybridized with Universal cDNA

source_name: 12R cy3(g) Universal RNA

source_name: 12R cy5(r) MDA-MB231 cell


title: Xenograft tumor: 11R cy5(r) HCT116 cell co-hybridized with Universal cDNA

source_name: 11R cy3(g) Universal RNA

source_name: 11R cy5(r) HCT116 cell


title: Xenograft tumor: 14R cy5(r) MDA-MB231 cell co-hybridized with Universal cDNA

source_name: 14R cy3(g) Universal RNA

source_name: 14R cy5(r) MDA-MB231 cell


title: Xenograft tumor: 14L cy5(r) Universal RNA co-hybridized with Universal cDNA

source_name: 14L cy3(g) MDA-MB231 cell

source_name: 14L cy5(r) Universal RNA


title: Xenograft tumor: 23L cy3(g) PC3c co-hybridized with Universal cDNA

source_name: 23L cy3(g) PC3c

source_name: 23L cy5(r) Universal


title: Xenograft tumor: 22L cy3(g) PC3c co-hybridized with Universal cDNA

source_name: 22L cy3(g) PC3c

source_name: 22L cy5(r) Universal


title: Xenograft tumor: 12L cy5(r) Universal RNA co-hybridized with Universal cDNA

source_name: 12L cy3(g) MDA-MB231 cell

source_name: 12L cy5(r) Universal RNA


title: Reference Hybridization R2

source_name: Sham rat A total kidney

source_name: Sham rat E total kidney


title: Xenograft tumor: 23R cy5(r) PC3c co-hybridized with Universal cDNA

source_name: 23R cy3(g) Universal

source_name: 23R cy5(r) PC3c


title: Hybridization E2 cy5 sham

source_name: ARF Rat E total kidney

source_name: Sham Rat E total kidney


title: Xenograft tumor: 25L cy3(g) SKOV3c co-hybridized with Universal cDNA

source_name: 25L cy3(g) SKOV3c

source_name: 25L cy5(r) Universal


title: Xenograft tumor: 19L cy3(g) SKOV3c co-hybridized with Universal cDNA

source_name: 19L cy3(g) SKOV3c

source_name: 19L cy5(r) Universal


title: Xenograft tumor: 25R cy5(r) SKOV3c co-hybridized with Universal cDNA

source_name: 25R cy3(g) Universal

source_name: 25R cy5(r) SKOV3c


title: Xenograft tumor: 19R cy5(r) SKOV3c co-hybridized with Universal cDNA

source_name: 19R cy3(g) Universal

source_name: 19R cy5(r) SKOV3c


title: Xenograft tumor: 90L cy3(g) A549t#4 co-hybridized with Universal cDNA

source_name: 90L cy5(r) Universal


title: Xenograft tumor: 91L cy3(g) A549t#5 co-hybridized with Universal cDNA

source_name: 91L cy5(r) Universal


title: Xenograft tumor: 65R cy5(r) A549t#5 co-hybridized with Universal cDNA

source_name: 65R cy3(g) Universal


title: Xenograft tumor: 90R cy5(r) A549t#4 co-hybridized with Universal cDNA

source_name: 90R cy3(g) Universal


title: Xenograft tumor: 91R cy5(r) A549t#5 co-hybridized with Universal cDNA

source_name: 91R cy3(g) Universal


title: Xenograft tumor: 65L cy3(g) A549t#5 co-hybridized with Universal cDNA

source_name: 65L cy5(r) Universal


title: Xenograft tumor: 60L cy3(g) A549t#3 co-hybridized with Universal cDNA

source_name: 60L cy5(r) Universal


title: Xenograft tumor: 64L cy3(g) HCT116t#3 co-hybridized with Universal cDNA

source_name: 64L cy5(r) Universal


title: Xenograft tumor: 59L cy3(g) A549t#2 co-hybridized with Universal cDNA

source_name: 59L cy5(r) Universal


title: Xenograft tumor: 29L cy3(g) A549t#1 co-hybridized with Universal cDNA

source_name: 29L cy5(r) Universal


title: Xenograft tumor: 60R cy5(r) A549t#3 co-hybridized with Universal cDNA

source_name: 60R cy3(g) Universal


title: Xenograft tumor: 63R cy5(r) HCT116t#3 co-hybridized with Universal cDNA

source_name: 63R cy3(g) Universal


title: Xenograft tumor: 64R cy5(r) HCT116t#3 co-hybridized with Universal cDNA

source_name: 64R cy3(g) Universal


title: Xenograft tumor: 36L cy3(g) A549t#1 co-hybridized with Universal cDNA

source_name: 36L cy5(r) Universal


title: Xenograft tumor: 36R cy5(r) A549t#1 co-hybridized with Universal cDNA

source_name: 36R cy3(g) Universal


title: Xenograft tumor: 26L cy3(g) HCT116t#1 co-hybridized with Universal cDNA

source_name: 26L cy5(r) Universal


title: Xenograft tumor: 29R cy5(r) A549t#1 co-hybridized with Universal cDNA

source_name: 29R cy3(g) Universal


title: Xenograft tumor: 26R cy5(r) HCT116t#1 co-hybridized with Universal cDNA

source_name: 26R cy3(g) Universal


title: Xenograft tumor: 21L cy3(g) HCT116t#2 co-hybridized with Universal cDNA

source_name: 21L cy5(r) Universal


title: Xenograft tumor: 21R cy5(r) HCT116t#2 co-hybridized with Universal cDNA

source_name: 21R cy3(g) Universal


title: Xenograft tumor: 63L cy3(g) HCT116t#3 co-hybridized with Universal cDNA

source_name: 63L cy5(r) Universal


title: Xenograft tumor: 27L cy3(g) HCT116t#2 co-hybridized with Universal cDNA

source_name: 27L cy5(r) Universal


title: Xenograft tumor: 58R cy5(r) MDA-MB231t#3 co-hybridized with Universal cDNA

source_name: 58R cy3(g) Universal


title: Xenograft tumor: 46R cy5(r) HCT116t#1 co-hybridized with Universal cDNA

source_name: 46R cy3(g) Universal


title: Xenograft tumor: 46L cy3(g) HCT116t#1 co-hybridized with Universal cDNA

source_name: 46L cy5(r) Universal


title: Xenograft tumor: 55L cy3(g) MDA-MB231t#2 co-hybridized with Universal cDNA

source_name: 55L cy5(r) Universal


title: Xenograft tumor: 58L cy3(g) MDA-MB231t#3 co-hybridized with Universal cDNA

source_name: 58L cy5(r) Universal


title: Xenograft tumor: 54R cy5(r) MDA-MB231t#1 co-hybridized with Universal cDNA

source_name: 54R cy3(g) Universal


title: Xenograft tumor: 68R cy5(r) MDA-MB231t#3 co-hybridized with Universal cDNA

source_name: 68R cy3(g) Universal


title: Xenograft tumor: 27R cy5(r) HCT116t#2 co-hybridized with Universal cDNA

source_name: 27R cy3(g) Universal


title: Xenograft tumor: 55R cy5(r) MDA-MB231t#2 co-hybridized with Universal cDNA

source_name: 55R cy3(g) Universal


title: Xenograft tumor: 54L cy3(g) MDA-MB231t#1 co-hybridized with Universal cDNA

source_name: 54L cy5(r) Universal


title: Xenograft tumor: 49L cy3(g) MDA-MB231t#1 co-hybridized with Universal cDNA

source_name: 49L cy5(r) Universal


title: Xenograft tumor: 68L cy3(g) MDA-MB231t#4 co-hybridized with Universal cDNA

source_name: 68L cy5(r) Universal


title: Xenograft tumor: 50L cy3(g) MDA-MB231t#2 co-hybridized with Universal cDNA

source_name: 50L cy5(r) Universal


title: Xenograft tumor: 51L cy3(g) MDA-MB231t#3 co-hybridized with Universal cDNA

source_name: 51L cy5(r) Universal


title: Xenograft tumor: 50R cy5(r) MDA-MB231t#2 co-hybridized with Universal cDNA

source_name: 50R cy3(g) Universal


title: Xenograft tumor: 51R cy5(r) MDA-MB231t#3 co-hybridized with Universal cDNA

source_name: 51R cy3(g) Universal


title: Xenograft tumor: 62R cy5(r) PC3t#2 co-hybridized with Universal cDNA

source_name: 62R cy3(g) Universal


title: Xenograft tumor: 93L cy3(g) PC3t#5 co-hybridized with Universal cDNA

source_name: 93L cy5(r) Universal


title: Xenograft tumor: 49R cy5(r) MDA-MB231t#1 co-hybridized with Universal cDNA

source_name: 49R cy3(g) Universal


title: Xenograft tumor: 93R cy5(r) PC3t#5 co-hybridized with Universal cDNA

source_name: 93R cy3(g) Universal


title: Xenograft tumor: 22R cy5(r) PC3c co-hybridized with Universal cDNA

source_name: 22R cy3(g) Universal

source_name: 22R cy5(r) PC3c


title: Xenograft tumor: 92R cy5(r) PC3t#4 co-hybridized with Universal cDNA

source_name: 92R cy3(g) Universal


title: Xenograft tumor: 53R cy5(r) PC3t#3 co-hybridized with Universal cDNA

source_name: 53R cy3(g) Universal


title: Xenograft tumor: 61L cy3(g) PC3t#2 co-hybridized with Universal cDNA

source_name: 61L cy5(r) Universal


title: Xenograft tumor: 53L cy3(g) PC3t#3 co-hybridized with Universal cDNA

source_name: 53L cy5(r) Universal


title: Xenograft tumor: 62L cy3(g) PC3t#2 co-hybridized with Universal cDNA

source_name: 62L cy5(r) Universal


title: Xenograft tumor: 61R cy5(r) PC3t#2 co-hybridized with Universal cDNA

source_name: 61R cy3(g) Universal


title: Xenograft tumor: 92L cy3(g) PC3t#4 co-hybridized with Universal cDNA

source_name: 92L cy5(r) Universal


title: Xenograft tumor: 47R cy5(r) PC3t#1 co-hybridized with Universal cDNA

source_name: 47R cy3(g) Universal


title: Xenograft tumor: 47L cy3(g) PC3t#1 co-hybridized with Universal cDNA

source_name: 47L cy5(r) Universal


title: Xenograft tumor: 52L cy3(g) PC3t#1 co-hybridized with Universal cDNA

source_name: 52L cy5(r) Universal


title: Xenograft tumor: 48R cy5(r) PC3t#3 co-hybridized with Universal cDNA

source_name: 48R cy3(g) Universal


title: Xenograft tumor: 66R cy5(r) SKOV3t#4 co-hybridized with Universal cDNA

source_name: 66R cy3(g) Universal

source_name: 66R cy5(r) SKOV3t#4


title: Xenograft tumor: 48L cy3(g) PC3t#3 co-hybridized with Universal cDNA

source_name: 48L cy5(r) Universal


title: Xenograft tumor: 67R cy5(r) SKOV3t#5 co-hybridized with Universal cDNA

source_name: 67R cy3(g) Universal

source_name: 67R cy5(r) SKOV3t#5


title: Xenograft tumor: 52R cy5(r) PC3t#1 co-hybridized with Universal cDNA

source_name: 52R cy3(g) Universal


title: Xenograft tumor: 67L cy3(g) SKOV3t#5 co-hybridized with Universal cDNA

source_name: 67L cy3(g) SKOV3t#5

source_name: 67L cy5(r) Universal


title: Xenograft tumor: 28L cy3(g) SKOV3t#1 co-hybridized with Universal cDNA

source_name: 28L cy3(g) SKOV3t#1

source_name: 28L cy5(r) Universal


title: Xenograft tumor: 66L cy3(g) SKOV3t#4 co-hybridized with Universal cDNA

source_name: 66L cy3(g) SKOV3t#4

source_name: 66L cy5(r) Universal


title: Xenograft tumor: 30L cy3(g) SKOV3t#1 co-hybridized with Universal cDNA

source_name: 30L cy3(g) SKOV3t#1

source_name: 30L cy5(r) Universal


title: Xenograft tumor: 28R cy5(r) SKOV3t#1 co-hybridized with Universal cDNA

source_name: 28R cy3(g) Universal

source_name: 28R cy5(r) SKOV3t#1


title: Xenograft tumor: 31L cy3(g) SKOV3t#2 co-hybridized with Universal cDNA

source_name: 31L cy3(g) SKOV3t#2

source_name: 31L cy5(r) Universal


title: Xenograft tumor: 30R cy3(g) SKOV3t#1 co-hybridized with Universal cDNA

source_name: 30R cy3(g) SKOV3t#1

source_name: 30R cy5(r) Universal


title: Xenograft tumor: 35R cy5(r) SKOV3t#3 co-hybridized with Universal cDNA

source_name: 35R cy3(g) Universal

source_name: 35R cy5(r) SKOV3t#3


title: Xenograft tumor: 33R cy3(g) SKOV3t#2 co-hybridized with Universal cDNA

source_name: 33R cy3(g) SKOV3t#2

source_name: 33R cy5(r) Universal


title: Xenograft tumor: 34L cy3(g) SKOV3t#3 co-hybridized with Universal cDNA

source_name: 34L cy3(g) SKOV3t#3

source_name: 34L cy5(r) Universal


title: Xenograft tumor: 34R cy5(r) SKOV3t#3 co-hybridized with Universal cDNA

source_name: 34R cy3(g) Universal

source_name: 34R cy5(r) SKOV3t#3


title: Xenograft tumor: 35L cy3(g) SKOV3t#3 co-hybridized with Universal cDNA

source_name: 35L cy3(g) SKOV3t#3

source_name: 35L cy5(r) Universal


title: Xenograft tumor: 31R cy3(g) SKOV3t#2 co-hybridized with Universal cDNA

source_name: 31R cy3(g) SKOV3t#2

source_name: 31R cy5(r) Universal


title: Xenograft tumor: 33L cy3(g) SKOV3t#2 co-hybridized with Universal cDNA

source_name: 33L cy3(g) SKOV3t#2

source_name: 33L cy5(r) Universal


title: 21 day low Fe group 2 (RAE230A)

description: rat duodenum

source_name: rat duodenum


title: ColonTumor022KAFBT_cta.txt

first: Bruce

last: Aronow

institute: Cincinnati Children's Hospital Medical Center

description:
Colon Tumor
Keywords = mouse gene expression database

source_name: Colon

source_name: Universal mouse reference RNA


title: ColonTumor022RAFBU_cta.txt


title: Orangcy5vsHumancy3slide67

city: New Haven

first: Yoav

last: Gilad

state: CT

address: 333 Cedar St.

institute: Yale

description: Orang Cy5 vs. Human Cy3 on slide 67

organism:
Pongo pygmaeus
Homo sapiens

source_name: orang

source_name: human


title: Rhesuscy5vsHumancy3slide81

description: Rhesus Cy5 vs. Human Cy3 on slide 81

organism:
Macaca mulatta
Homo sapiens

source_name: rhesus


title: Orangcy5vsHumancy3slide63

description: Orang Cy5 vs. Human Cy3 on slide 63


title: Humancy5vsHumancy3slide80

description: Human self hybridization on slide 80


title: Humancy5vsHumancy3slide60

description: Chimp Cy3 vs. Human Cy5 on slide 60


title: Humancy5vsRhesuscy3slide82

description: Rhesus Cy3 vs. Human Cy5 on slide 82


title: Humancy5vsChimpcy3slide56

description: Chimp Cy5 vs. Human Cy3 on slide 56

organism:
Pan troglodytes
Homo sapiens

source_name: chimp


title: Humancy5vsChimpcy3slide89

description: Chimp Cy3 vs. Human Cy5 on slide 89


title: Humancy5vsOrangcy3slide68

description: Orang Cy3 vs. Human Cy5 on slide 68


title: Humancy5vsHumancy3slide77

description: Human self hybridization on slide 77


title: Rhesuscy5vsHumancy3slide83

description: Rhesus Cy5 vs. Human Cy3 on slide 83


title: Humancy5vsHumancy3slide85

description: Human self hybridization on slide 85


title: Chimpcy5vsHumancy3slide54

description: Chimp Cy5 vs. Human Cy3 on slide 54


title: Humancy5vsRhesuscy3slide72

description: Rhesus Cy3 vs Human Cy5 on slide 72


title: Chimpcy5vsHumancy3slide55

description: Chimp Cy5 vs. Human Cy3 on slide 55

source_name: Chimp

source_name: Human


title: mtDNA "Common"-deletion subject 4

status: Public on Jan 22 2005

city: Milan

first: Marco

last: Crimi

address: Via F. Sforza, 35

department: Dept. of Neuroscience

country: Italy

institute: University of Milan

description:
Skeletal muscle gene expression profiling in Mitochondrial disorders
Keywords = muscle
Keywords = mtdna
Keywords = human
Keywords = mitochondrial disorders

source_name: Skeletal muscle biopsy


title: mtDNA "Common"-deletion subject 2


title: Humancy5vsOrangcy3slide78

description: Orang Cy3 vs. Human Cy5 on slide 78


title: mtDNA "Common"-deletion subject 3


title: A3243G-PEO subject 3


title: A3243G-PEO subject 1


title: A3243G-MELAS subject 2


title: A3243G-PEO subject 2


title: A3243G-PEO subject 4


title: mtDNA "Common"-deletion subject 1


title: A3243G-MELAS subject 1


title: A3243G-MELAS subject 3


title: CD4IncDec-test-3

city: Rockville

first: Maryanne

last: Vahey

address: 1600 East Gude Drive

institute: Walter Reed Army Institute of Research

description:
HIV seropositve, samples used to test the trend (increase or decrease) of CD4 cells
Keywords = HIV, Human, PBMC, in vivo

source_name: Human PBMC


title: A3243G-MELAS subject 4


title: CD4IncDec-test-2


title: Normal subject 3


title: CD4IncDec-test-1


title: CD4IncTp2-2

description:
HIV seropositive, CD4 cells increase over time, sampled at time point2
Keywords = HIV, Human, PBMC, in vivo


title: Normal subject 2


title: CD4IncTp1-6

description:
HIV seropositive, CD4 cells increase over time, sampled at time point1
Keywords = HIV, Human, PBMC, in vivo


title: CD4IncTp2-8


title: CD4IncTp2-7


title: CD4IncTp2-5


title: CD4IncTp2-4


title: CD4IncTp2-3


title: CD4IncTp1-9


title: Normal subject 1


title: CD4IncTp2-6


title: CD4IncTp1-7


title: CD4IncTp2-1


title: CD4IncTp1-5


title: CD4IncTp1-8


title: CD4IncTp1-2


title: CD4IncTp1-4


title: CD4DecTp2-10

description:
HIV seropositive, CD4 cells decrease over time, sampled at time point 2
Keywords = HIV, Human, PBMC, in vivo


title: CD4IncTp1-3


title: CD4DecTp2-7


title: CD4DecTp2-11


title: CD4DecTp2-13


title: CD4DecTp2-12


title: CD4IncTp1-1


title: CD4DecTp2-9


title: CD4DecTp2-8


title: CD4DecTp2-6


title: CD4DecTp2-2


title: CD4DecTp1-4

description:
HIV seropositive, CD4 cells decrease over time, sampled at time point 1
Keywords = HIV, Human, PBMC, in vivo


title: CD4DecTp2-5


title: CD4DecTp1-9


title: CD4DecTp1-2


title: CD4DecTp1-5


title: CD4DecTp2-3


title: CD4DecTp1-8


title: CD4DecTp1-6


title: CD4DecTp2-4


title: CD4DecTp1-1


title: CD4DecTp2-1


title: CD4DecTp1-3


title: CD4DecTp1-10


title: SeroTest-10

description:
HIV seropositive, samples used to test HIV infection status
Keywords = HIV, Human, PBMC, in vivo


title: SeroTest-9


title: SeroTest-7


title: CD4DecTp1-7


title: SeroTest-8


title: SeroTest-3


title: SeroTest-5


title: SeroNeg-10

description:
HIV seronegative sample
Keywords = HIV, Human, PBMC, in vivo


title: SeroTest-2


title: SeroNeg-12


title: SeroTest-4


title: SeroTest-6


title: SeroNeg-5


title: SeroNeg-9


title: SeroNeg-11


title: SeroTest-1


title: SeroNeg-4


title: SeroNeg-3


title: SeroNeg-6


title: SeroNeg-7


title: SeroNeg-2


title: SeroNeg-1


title: SeroNeg-8


title: Confluent2

status: Public on Jan 20 2005

city: Indianapolis

first: Leni

last: Moldovan

state: IN

address: 980 W Walnut St., Rm. C422

department: Ophthalmology

institute: Indiana University

description:
Algorithm:	Statistical
Corner+	Avg:162, Count:32
Corner-	Avg:8902, Count:32
Background	Avg:70.48,Stdev:1.07,Max:73.5,Min:67.5
Noise	Avg:3.78,Stdev:0.18,Max:4.4,Min:3.3
RawQ	2.39
BF
Alpha1	0.04
Alpha2	0.06
Tau	0.015
Gamma1H	0.0025
Gamma1L	0.0025
Gamma2H	0.003
Gamma2L	0.003
Perturbation	1.1
TGT	500
NF	1
SF	8.985465
SFGene	All
2nd experiment out of 4. mRNA was extracted (standard Quiagen) from 6 x 10*6 mouse aortic endothelial cells, mature confluent monolayer. The rest of procedures are standard, as recommended by Affymetrix. The expressed genes were compared with those from subconfluent endothelial cells. With few exceptions, many endothelial specific genes and functions were downregulated with loss of confluency, as well as several groups representing specific organelles (endoplasmic reticulum, Golgi, lysosomes, peroxisomes). Proliferation and microtubules were highly upregulated.
Keywords = endothelium
Keywords = confluency
Lot batch = 1004225

source_name: aortic endothelial cells


title: Subconfluent2

description:
Algorithm:	Statistical
Corner+	Avg:67, Count:32
Corner-	Avg:8079, Count:32
Background	Avg:44.31,Stdev:1.24,Max:46.5,Min:40.8
Noise	Avg:1.54,Stdev:0.16,Max:2.5,Min:1.3
RawQ	1.63
BF
Alpha1	0.04
Alpha2	0.06
Tau	0.015
Gamma1H	0.0025
Gamma1L	0.0025
Gamma2H	0.003
Gamma2L	0.003
Perturbation	1.1
TGT	500
NF	1
SF	13.27759
SFGene	All
2nd experiment out of 4. mRNA was extracted (standard Quiagen) from 6 x 10*6 mouse aortic endothelial cells, subconfluent culture (< 50% confluency). The rest of procedures are standard, as recommended by Affymetrix. The expressed genes were compared with those from subconfluent endothelial cells. With few exceptions, many endothelial specific genes and functions were downregulated with loss of confluency, as well as several groups representing specific organelles (endoplasmic reticulum, Golgi, lysosomes, peroxisomes). Proliferation and microtubules were highly upregulated.
Keywords = endothelium
Keywords = confluency
Lot batch = 1004390


title: Subconfluent3

description:
Algorithm:	Statistical
Corner+	Avg:113, Count:32
Corner-	Avg:7611, Count:32
Background	Avg:58.60,Stdev:0.66,Max:60.6,Min:57.3
Noise	Avg:1.78,Stdev:0.08,Max:2.0,Min:1.6
RawQ	1.87
BF
Alpha1	0.04
Alpha2	0.06
Tau	0.015
Gamma1H	0.0025
Gamma1L	0.0025
Gamma2H	0.003
Gamma2L	0.003
Perturbation	1.1
TGT	500
NF	1
SF	8.194065
SFGene	All
3rd experiment out of 4. mRNA was extracted (standard Quiagen) from 6 x 10*6 mouse aortic endothelial cells, subconfluent culture (< 50% confluency). The rest of procedures are standard, as recommended by Affymetrix. The expressed genes were compared with those from subconfluent endothelial cells. With few exceptions, many endothelial specific genes and functions were downregulated with loss of confluency, as well as several groups representing specific organelles (endoplasmic reticulum, Golgi, lysosomes, peroxisomes). Proliferation and microtubules were highly upregulated.
Keywords = endothelium
Keywords = confluency
Lot batch = 1005795


title: Confluent4

description:
Algorithm:	Statistical
Corner+	Avg:137, Count:32
Corner-	Avg:18633, Count:32
Background	Avg:68.57,Stdev:1.25,Max:72.9,Min:65.9
Noise	Avg:2.86,Stdev:0.16,Max:3.2,Min:2.5
RawQ	2.61
BF
Alpha1	0.04
Alpha2	0.06
Tau	0.015
Gamma1H	0.0025
Gamma1L	0.0025
Gamma2H	0.003
Gamma2L	0.003
Perturbation	1.1
TGT	500
NF	1
SF	3.556811
SFGene	All
4th experiment out of 4. mRNA was extracted (standard Quiagen) from 6 x 10*6 mouse aortic endothelial cells, mature confluent monolayer. The rest of procedures are standard, as recommended by Affymetrix. The expressed genes were compared with those from subconfluent endothelial cells. With few exceptions, many endothelial specific genes and functions were downregulated with loss of confluency, as well as several groups representing specific organelles (endoplasmic reticulum, Golgi, lysosomes, peroxisomes). Proliferation and microtubules were highly upregulated.
Keywords = endothelium
Keywords = confluency
Lot batch = 1004225


title: Subconfluent4

description:
Algorithm:	Statistical
Corner+	Avg:250, Count:32
Corner-	Avg:15485, Count:32
Background	Avg:67.66,Stdev:1.78,Max:74.5,Min:65.1
Noise	Avg:2.58,Stdev:0.14,Max:3.0,Min:2.2
RawQ	2.36
BF
Alpha1	0.04
Alpha2	0.06
Tau	0.015
Gamma1H	0.0025
Gamma1L	0.0025
Gamma2H	0.003
Gamma2L	0.003
Perturbation	1.1
TGT	500
NF	1
SF	3.045698
SFGene	All
4th experiment out of 4. mRNA was extracted (standard Quiagen) from 6 x 10*6 mouse aortic endothelial cells, subconfluent culture (< 50% confluency). The rest of procedures are standard, as recommended by Affymetrix. The expressed genes were compared with those from subconfluent endothelial cells. With few exceptions, many endothelial specific genes and functions were downregulated with loss of confluency, as well as several groups representing specific organelles (endoplasmic reticulum, Golgi, lysosomes, peroxisomes). Proliferation and microtubules were highly upregulated.
Keywords = endothelium
Keywords = confluency
Lot batch = 1005795


title: Confluent3

description:
Algorithm:	Statistical
Corner+	Avg:87, Count:32
Corner-	Avg:8658, Count:32
Background	Avg:50.81,Stdev:0.96,Max:52.6,Min:48.1
Noise	Avg:1.83,Stdev:0.08,Max:2.1,Min:1.7
RawQ	1.73
BF
Alpha1	0.04
Alpha2	0.06
Tau	0.015
Gamma1H	0.0025
Gamma1L	0.0025
Gamma2H	0.003
Gamma2L	0.003
Perturbation	1.1
TGT	500
NF	1
SF	7.35167
SFGene	All
3rd experiment out of 4. mRNA was extracted (standard Quiagen) from 6 x 10*6 mouse aortic endothelial cells, mature confluent monolayer. The rest of procedures are standard, as recommended by Affymetrix. The expressed genes were compared with those from subconfluent endothelial cells. With few exceptions, many endothelial specific genes and functions were downregulated with loss of confluency, as well as several groups representing specific organelles (endoplasmic reticulum, Golgi, lysosomes, peroxisomes). Proliferation and microtubules were highly upregulated.
Keywords = endothelium
Keywords = confluency
Lot batch = 1005795


title: Confluent1

description:
Algorithm:	Statistical
Corner+	Avg:218, Count:32
Corner-	Avg:13803, Count:32
Background	Avg:59.41,Stdev:1.72,Max:64.2,Min:55.7
Noise	Avg:2.17,Stdev:0.16,Max:3.0,Min:1.9
RawQ	2.07
BF
Alpha1	0.04
Alpha2	0.06
Tau	0.015
Gamma1H	0.0025
Gamma1L	0.0025
Gamma2H	0.003
Gamma2L	0.003
Perturbation	1.1
TGT	500
NF	1
SF	5.579305
SFGene	All
1st experiment out of 4. mRNA was extracted (standard Quiagen) from 6 x 10*6 mouse aortic endothelial cells, mature confluent monolayer. The rest of procedures are standard, as recommended by Affymetrix. The expressed genes were compared with those from subconfluent endothelial cells. With few exceptions, many endothelial specific genes and functions were downregulated with loss of confluency, as well as several groups representing specific organelles (endoplasmic reticulum, Golgi, lysosomes, peroxisomes). Proliferation and microtubules were highly upregulated.
Keywords = endothelium
Keywords = confluency
Lot batch = 1003388


title: Subconfluent1

description:
Algorithm:	Statistical
Corner+	Avg:116, Count:32
Corner-	Avg:14643, Count:32
Background	Avg:52.38,Stdev:0.40,Max:53.4,Min:51.1
Noise	Avg:2.10,Stdev:0.09,Max:2.4,Min:1.9
RawQ	1.98
BF
Alpha1	0.04
Alpha2	0.06
Tau	0.015
Gamma1H	0.0025
Gamma1L	0.0025
Gamma2H	0.003
Gamma2L	0.003
Perturbation	1.1
TGT	500
NF	1
SF	4.386849
SFGene	All
1st experiment out of 4. mRNA was extracted (standard Quiagen) from 6 x 10*6 mouse aortic endothelial cells, subconfluent culture (< 50% confluency). The rest of procedures are standard, as recommended by Affymetrix. The expressed genes were compared with those from confluent endothelial cells. With few exceptions, many endothelial specific genes and functions were downregulated with loss of confluency, as well as several groups representing specific organelles (endoplasmic reticulum, Golgi, lysosomes, peroxisomes). Proliferation and microtubules were highly upregulated.
Keywords = endothelium
Keywords = confluency
Lot batch = 1003388


title: Confite leaves compared to W23 (-UV-B)-2

city: Rosario

first: Paula

last: Casati

state: Santa Fe

address: Suipacha 531

department: Biological Sciences

country: Argentina

institute: Universidad Nacional de Rosario

description: In experiments with supplemental UV-B radiation in the greenhouse, plants were germinated under supplemental visible lighting to 10% of summer noon radiation without UV-B for 3 weeks. After that, plants were illuminated by UV-B lamps using fixtures mounted 30 cm above the plants (Phillips, F40UVB 40 W and TL 20 W/12) for 8 h, and leaf samples were collected immediately after the end of the light treatment; this simulates a 4-fold increase in UV-B at 305 nm compared to the Stanford field in August at noon. The bulbs were covered using CA filters to exclude wavelengths lower than 280 nm. As a control, plants were exposed for the same period of time under the same lamps covered with PE (no UV-B treatment). The output of the UV-B source in all the experiments was recorded using the Optronics spectroradiometer.

organism: Zea mays

source_name: Confite leaves (-UV-B)

source_name: W23 leaves (-UV-B)


title: Confite leaves compared to W23 leaves (+UV-B)-2

source_name: W23 leaves (+UV-B)

source_name: Confite leaves (+UV-B)


title: Mishca leaves compared to W23 leaves (+UV-B)

source_name: Mishca leaves (+UV-B)


title: Mishca leaves compared to W23 leaves (+UV-B)-2


title: Confite leaves compared to W23 leaves (-UV-B)


title: Confite leaves compared to W23 leaves (+UV-B)


title: HMEC_50 vs BT474

city: Kenilworth

first: Wei

last: Ding

state: NJ

address: 2015 Galloping Hill Road

department: Discovery Technology

institute: Schering Plough Research Institute

description: Expression comparison between primary normal human mammary epithelial cell from 50 years old donor and  human breast cancer cell line BT474


title: Mishca leaves compared to W23 leaves (-UV-B)-2

source_name: Mishca leaves (-UV-B)


title: Conico leaves compared to W23 leaves (-UV-B)-2

description: In these comparisons, samples from one landrace were hybridized with samples from W23 line under the same treatment (+UV-B, supplementary UV-B; -UV-B, no UV-B).

source_name: Conico leaves (-UV-B)


title: HMEC_50 vs BT549

description: Expression comparison between primary normal human mammary epithelial cell from 50 years old donor and  human breast cancer cell line BT549


title: HMEC_50 vs SKBR3

description: Expression comparison between primary normal human mammary epithelial cell from 50 years old donor and  human breast cancer cell line SKBR3


title: Conico leaves compared to W23 leaves (-UV-B)


title: HMEC_50 vs BT20

description: Expression comparison between primary normal human mammary epithelial cell from 50 years old donor and  human breast cancer cell line BT20


title: HMEC_50 vs MDA_MB_468

description: Expression comparison between primary normal human mammary epithelial cell from 50 years old donor and  human breast cancer cell line MDA_MB_468


title: HMEC_50 vs ZR_75_1

description: Expression comparison between primary normal human mammary epithelial cell from 50 years old donor and  human breast cancer cell line ZR-75-1


title: Mishca leaf RNA compared to b,pl leaf RNA (-UV-B)

source_name: b,pl leaf RNA (-UV-B)

source_name: Mishca leaf RNA (-UV-B)


title: Conico leaves compared with W23 b,pl leaves (+UV-B)

source_name: W23 b,pl leaves (+UV-B)

source_name: Conico leaves compared (+UV-B)


title: Cacahuacintle leaves compared to W23 leaves (-UV-B)

source_name: Cacahuacintle leaves (-UV-B)


title: Conico leaves compared to W23 (+UV-B)-2

source_name: Conico leaves (+UV-B)


title: Cacahuacintle leaves compared to W23 b,pl leaves (-UV-B)-2

source_name: W23 b,pl leaves (-UV-B)


title: Cacahuacintle leaves compared to W23 leaves (-UV-B)-2


title: Cacahuacintle leaves compared to W23 b,pl leaves (+UV-B)

source_name: Cacahuacintle leaves (+UV-B)


title: SAN1 YC2

status: Public on Jan 19 2005

city: Seattle

last: Gottschling

state: WA

address: 1100 Fairview Avenue N., Mailstop A3-025

department: Division of Basic Sciences

institute: Fred Hutchinson Cancer Research Center

description: Cy5/Cy3 comparison of SAN1/san1 cells grown in YEPD

source_name: SAN1 YC

source_name: san1 YC


title: SAN1 YEPD 2

source_name: SAN1 YEPD

source_name: san1 YEPD


title: SAN1 YC5

description: Cy3/Cy5 comparison of SAN1/san1 cells grown in YC


title: SAN1 YC1


title: HMEC_50 vs HMEC_41

description: Expression comparison of primary normal human mammary epithelial cells between 50 years old and 41 years old donors


title: HMEC_50 vs T47D

description: Expression comparison between primary normal human mammary epithelial cell from 50 years old donor and  human breast cancer cell line T47D


title: SAN1 YC6


title: HMEC_50 vs MCF7

description: Expression comparison between primary normal human mammary epithelial cell from 50 years old donor and  human breast cancer cell line MCF7


title: SAN1 YEPD 5

description: Cy3/Cy5 comparison of SAN1/san1 cells grown in YEPD


title: SAN1 YEPD 6


title: SAN1 YEPD 3


title: SAN1 YEPD 4


title: SAN1 YC4


title: X273e

status: Public on Jan 18 2005

city: Basel

first: Florent

last: Baty

address: Petersgraben 4

department: Pneumology

country: Switzerland

institute: Universitätsspital Basel

description:
Healthy control; Age=-; Sex=-
Keywords = DNA Microarrays, sarcoidosis, inflammation, follow-up study

source_name: peripheral blood cell


title: X276e


title: Arrocillo leaves compared to W23 b,pl (+ UV-B)-2

description: In these comparisons, samples from one landrace were hybridized with samples from W23 line under the same treatment (supplementary (+) UV-B or no (-) UV-B

source_name: Arrocillo leaves (+ UV-B)

source_name: W23 b,pl leaves (+ UV-B)


title: Arrocillo leaves compared to W23 (+UV-B)

source_name: W23 leaves (+UV-B)

source_name: Arrocillo leaves (+UV-B)


title: SAN1 YEPD 1


title: Arrocillo leaves compared to W23 b,pl (-UV-B)

source_name: Arrocillo leaves (-UV-B)


title: X272e


title: X270e


title: X269e


title: X271e


title: Arrocillo leaves compared to W23 b,pl (-UV-B)-2


title: S9

city: Singapore

first: Jayapal

last: Manikandan

country: Singapore

institute: NUS

description: SARS patient blood sample 9

source_name: SARS patient blood sample


title: S8

description: SARS patient blood sample 8


title: S7

description: SARS patient blood sample 7


title: X268e


title: S6

description: SARS patient blood sample 6


title: X265e


title: S3

description: SARS patient blood sample 1


title: X262e

description:
Sarcoidosis stage I patient; Age=39; Sex=M
Keywords = DNA Microarrays, sarcoidosis, inflammation, follow-up study


title: HMEC_50 vs HMEC_21

description: Expression comparison of primary normal human mammary epithelial cells between 50 years old and 21 years old donors


title: X267e


title: S10

description: SARS patient blood sample 10


title: X260e

description:
Sarcoidosis stage I patient; Age=27; Sex=M
Keywords = DNA Microarrays, sarcoidosis, inflammation, follow-up study


title: X266e


title: S4

description: SARS patient blood sample 4


title: X264e

description:
Sarcoidosis stage I patient; Age=33; Sex=F
Keywords = DNA Microarrays, sarcoidosis, inflammation, follow-up study


title: S5

description: SARS patient blood sample 5


title: X263e

description:
Sarcoidosis stage II/III patient; Age=37; Sex=F
Keywords = DNA Microarrays, sarcoidosis, inflammation, follow-up study


title: X257e

description:
Sarcoidosis stage II/III patient; Age=40; Sex=F
Keywords = DNA Microarrays, sarcoidosis, inflammation, follow-up study


title: X259e

description:
Sarcoidosis stage I patient; Age=20; Sex=F
Keywords = DNA Microarrays, sarcoidosis, inflammation, follow-up study


title: X261e

description:
Sarcoidosis stage I patient; Age=38; Sex=M
Keywords = DNA Microarrays, sarcoidosis, inflammation, follow-up study


title: X256e

description:
Sarcoidosis stage II/III patient; Age=34; Sex=F
Keywords = DNA Microarrays, sarcoidosis, inflammation, follow-up study


title: X275e


title: N4

description: PBMC normal sample RNA for Control

source_name: PBMC normal sample RNA for Control


title: X258e

description:
Sarcoidosis stage II/III patient; Age=61; Sex=F
Keywords = DNA Microarrays, sarcoidosis, inflammation, follow-up study


title: S2

description: SARS patient blood sample 1


title: S1

description: SARS patient blood sample 1


title: X255e

description:
Sarcoidosis stage I patient; Age=53; Sex=F
Keywords = DNA Microarrays, sarcoidosis, inflammation, follow-up study


title: N1

description: PBMC normal sample RNA for Control

source_name: PBMC normal sample RNA


title: X254e

description:
Sarcoidosis stage II/III patient; Age=25; Sex=M
Keywords = DNA Microarrays, sarcoidosis, inflammation, follow-up study


title: N3

description: PBMC normal sample RNA for Control


title: N2

description: PBMC normal sample RNA for Control


title: X253e

description:
Sarcoidosis stage I patient; Age=23; Sex=M
Keywords = DNA Microarrays, sarcoidosis, inflammation, follow-up study


title: PEL-5-1

status: Public on Jan 16 2005

city: New York

first: wen

last: fan

state: NY

address: 1300 York Ave

department: Pathology and Laboratory Medicine

institute: Weill Medical College of Cornell University

description: PEL-5 Cell line, No1

source_name: PEL-5 cell line


title: SM1-1

description: SM1 Cell line, No1

source_name: SM1 cell line


title: IBL4-2

description: IBL4 Cell line, No2

source_name: IBL4 cell line


title: IBL4-1

description: IBL4 Cell line, No1


title: BCBL-1-2

description: BCBL-1 Cell line, No2

source_name: BCBL-1 cell line


title: PEL-5-2

description: PEL-5 Cell line, No2


title: BC-3-2

description: BC-3 Cell line, No2

source_name: BC-3 cell line


title: BCKN-1-1

description: BCKN-1 Cell line, No1

source_name: BCKN-1 cell line


title: BC-5-1

description: BC-5 Cell line, No1

source_name: BC-5 cell line


title: SM1-2

description: SM1 Cell line, No2


title: BC-2-2

description: BC-2 Cell line, No2

source_name: BC-2 cell line


title: BC-2-1

description: BC-2 Cell line, No1


title: BC-3-1

description: BC-3 Cell line, No1


title: BCBL-1-1

description: BCBL-1 Cell line, No1


title: BC-5-2

description: BC-5 Cell line, No2


title: BC-1-2

description: BC-1 Cell line, No2

source_name: BC-1 cell line


title: BCKN-1-2

description: BCKN-1 Cell line, No2


title: SAN1 YC3

description: Cy5/Cy3 comparison of SAN1/san1 cells grown in YEPD

source_name: SAN1 YC

source_name: san1 YC


title: Pt. 1

description: Mononuclear cells from serous fluids of patient 1


title: NORMAL 2

status: Public on Jan 12 2005

city: Bethesda

first: Roshanak

middle: T

last: Semnani

address: Center Drive

department: LPD

institute: NIAID

description: Normal blood bank monocyte donor

source_name: human monocyte


title: M02-110 pre-treatment

description: Wuchereria bancrofti (Wb) positive Malian patient pre-treatment with ivermectin/albendazole.


title: M02-110 post-treatment

description: Wuchereria bancrofti (Wb) positive Malian patient post-treatment with ivermectin/albendazole.


title: M02-097 pre-treatment


title: M02-147 post-treatment


title: Pt. 3

description: Mononuclear cells from serous fluids of patient 3


title: M02-147 pre-treatment


title: Pt.2

description: Mononuclear cells from serous fluids of patient 2


title: M02-133 post-treatment

description: Wuchereria bancrofti (Wb) negative Malian patient post-treatment with ivermectin/albendazole.


title: 26786 PMT 2

status: Public on Jan 17 2005

city: Moffett Field

first: Waraporn

last: Tongprasit

state: CA

institute: NASA Ames Research Center

description: Time after deflagellation=120 min

organism: Chlamydomonas reinhardtii

source_name: cells of wild type (srain cc-124), pH-mediated severing


title: M02-097 post-treatment


title: M02-006 pre-treatment


title: M02-006 post-treatment

description: Wuchereria bancrofti (Wb) positive Malian patient pretreatment with ivermectin/albendazole.


title: M02-039 pretreatment

description: Wuchereria bancrofti (Wb) negative Malian patient pre-treatment with ivermectin/albendazole.


title: M02-039 post-treatment


title: H6c7-Kr_U133A

status: Public on Jan 11 2005

city: Toronto

first: Ming-Sound

last: Tsao

institute: Ontario Cancer Institute/ Princess Margaret Hospital

description: K-ras oncogene was introduced into H6c7 cell line. RNA was extracted using phenol/chloroform and purified with Qiagen RNeasy kit. cRNA was produced using standard Affymetrix procedures.

source_name: K-ras oncogene-expressing H6c7 cell line


title: MDS patient MDS7 (Repl. 2)

status: Public on Jan 10 2005

city: Oxford

first: Andrea

last: Pellagatti

address: John Radcliffe Hospital

department: NDCLS, RDM

institute: University of Oxford

description: The patient RNA was compared to the normal RNA pool using a T7-based amplification method: 1 microgram of total RNA was reverse-transcribed using a T7-oligodT primer and then labelled aRNAs produced via in vitro transcription in the presence of either Cy3-UTP or Cy5-UTP. The labelled aRNAs were then purified and hybridized competitively to the microarray.

source_name: Neutrophils from 7 healthy controls (RNA pooled)

source_name: Neutrophils from MDS patient


title: 26005 PMT2 532

description: Time after deflagellation=0


title: MDS patient MDS7 (Repl. 1)


title: X274e

description:
Healthy control; Age=-; Sex=-
Keywords = DNA Microarrays, sarcoidosis, inflammation, follow-up study

source_name: peripheral blood cell


title: MDS patient MDS6 (Repl. 2)


title: 26786 PMT1

description: Time after deflagellation=120 min


title: 26005 PMT1 532

description: Time after deflagellation=0

source_name: cells of wild-type (strain cc-124), ph-mediated severing


title: M02-133 pre-treatment


title: MDS patient MDS32 (Repl. 1)


title: MDS patient MDS32 (Repl. 2)


title: MDS patient MDS5 (Repl. 1)


title: MDS patient MDS6 (Repl. 1)


title: MDS patient MDS33 (Repl. 2)


title: AML patient MDS20 (Repl. 2)

source_name: Neutrophils from AML patient


title: MDS patient MDS2 (Repl. 2)


title: AML patient MDS20 (Repl. 1)


title: MDS patient MDS15 (Repl. 2)


title: MDS patient MDS2 (Repl. 1)


title: MDS patient MDS4 (Repl. 2)


title: MDS patient MDS30


title: MDS patient MDS15 (Repl. 1)


title: MDS patient MDS4 (Repl. 1)


title: MDS patient MDS11 (Repl. 2)


title: MDS patient MDS3 (Repl. 2)


title: MDS patient MDS33 (Repl. 1)


title: MDS patient MDS3 (Repl. 1)


title: MDS patient MDS10 (Repl. 2)


title: MDS patient MDS10 (Repl. 1)


title: MDS patient MDS1 (Repl. 2)


title: MDS patient MDS1 (Repl. 1)


title: BC-1-1

description: BC-1 Cell line, No1


title: AML patient M1282 (Repl. 2)


title: MDS patient M1278 (Repl. 1)


title: MDS patient M1278 (Repl. 2)


title: MDS patient M1269 (Repl. 2)


title: MDS patient M1262 (Repl. 2)


title: MDS patient M1262 (Repl. 1)


title: MDS patient M1269 (Repl. 1)


title: MDS patient M1260 (Repl. 2)


title: MDS patient M1260 (Repl. 1)


title: MDS patient M1242 (Repl. 1)


title: MDS patient M1256 (Repl. 1)


title: MDS patient M1255 (Repl. 1)


title: MDS patient M1255 (Repl. 2)


title: Young 9

city: Lexington

first: Eric

last: Blalock

state: KY

address: 800 Rose St.

department: Molecular and Biomedical Pharmacology

institute: University of Kentucky

description:
10 male Fischer rats, aged 4 months were trained sequentially on two tasks, SWM and OMT; hippocampal tissue collected 24 hours after a 7 day training/testing sequence
Keywords = bioinformatics
Keywords = gene expression
Keywords = memory
Keywords = synaptic plasticity
Keywords = myeli
Keywords = inflamation

source_name: hippocampal CA1 tissue


title: MDS patient M1242 (Repl. 2)


title: NAL7

city: Riverside

first: Stephen

middle: R.

last: Spindler

department: Biochemistry

institute: University of California, Riverside

description:
Female Ames dwarf mouse (df/df) with ad libitum access to water and standard pelleted food (LabDiet, PMI Feeds, Inc., St Louis, MO) caged with microisolator filter tops.  Mice were killed between 24 to 26 months of age, tissues removed, rapidly frozen on dry ice, and stored in liquid nitrogen. Total liver RNA was isolated from frozen tissue as described (T. Tsuchiya, J.M. Dhahbi, X. Cui, P.L. Mote, A. Bartke, S.R. Spindler, Physiological Genomics, Submitted). mRNA levels were measured using the Affymetrix mouse U74Av2 array according to standard protocols. After hybridization, arrays were scanned using a Hewlett-Packard GeneArray Scanner. Image analysis was performed as described (Cao SX, Dhahbi JM, Mote PL, and Spindler SR. Genomic profiling of short- and long-term caloric restriction effects in the liver of aging mice. Proc Natl Acad Sci U S A 98: 10630-10635, 2001). A more detailed description of the methods can be found in (T. Tsuchiya, J.M. Dhahbi, X. Cui, P.L. Mote, A. Bartke, S.R. Spindler, Physiological Genomics, Submitted).
Keywords = Ames dwarf
Keywords = mouse
Keywords = Affymetrix
Keywords = caloric restriction

source_name: Phenotypically normal mouse (+/+ or +/df) with ad libitum access to standard pelleted food


title: H6c7-U133A

description: RNA was extracted using phenol/chloroform and purified with Qiagen RNeasy kit. cRNA was produced using standard Affymetrix procedures.

source_name: Human pancreatic duct epithelial cell line


title: Young 10


title: MDS patient CH (Repl. 2)


title: MDS patient M1256 (Repl. 2)


title: NAL8


title: Young 8


title: Young 7


title: NAL6


title: NAL4


title: NAL3


title: Young 6


title: Young 3


title: Young 5


title: NAL1


title: NAL2