title: LL2-Cy3+LL14-Cy5 (expt 1)

description:
Strain and culture conditions.  We grew wild-type T. elongatus (Yamaoka et al., Plant Cell Physiol. 19, 943-954) at 50oC under constant light from white fluorescent lamps at 38 micromol m-2 sec-1 (hereafter called LL conditions) in BG-11 liquid medium (Rippka et al., J. Gen. Microbiol. 111, 1-61) with bubbling of air containing 5% (v/v) CO2. We subjected the cells to 12 h of darkness to synchronize the circadian clock, and transferred them back to LL. We collected cells for RNA isolation at 2 h (LL2) and 14 h (LL14) after the transfer.
Microarray experiments.  We isolated total RNAs from two independent cultures by the hot-phenol method (Kucho et al., Genes Genet. Syst. 79, 189-197) and purified them using the SV total RNA isolation system (Promega, WI, USA). We used a mixture of the total RNAs from the two cultures for labeling reactions. We synthesized fluorescence-labeled cDNA by direct incorporation of Cy3-dUTP or Cy5-dUTP (Amersham Bioscience, NJ, USA) during random-primed reverse transcription, using 5.9 microgram total RNA and an RNA fluorescence labeling core kit (M-MLV version 2.0, TaKaRa, Japan). We prehybridized the microarray for 1 h at 42oC in a solution containing 5 X SSC (1 X SSC is 0.15 M NaCl, 0.015 M sodium citrate), 0.1% sodium lauryl sulfate (SDS), and 10 mg/ml bovine serum albumin. We washed the microarray at room temperature in distilled water 3 times for 1 min, rinsed it in 2-propanol, and dried it by centrifugation at 150 X g for 2 min. We performed hybridization for 16 h at 42oC in 12-mL solution containing 5 X SSC, 0.1% SDS, 30% formamide, and heat-denatured labeled cDNA. We then washed the microarray at room temperature with 2 X SSC containing 0.1% SDS for 4 min, with 0.1 X SSC containing 0.1% SDS for 4 min, and 3 times with 0.1 X SSC for 1 min. We dried the microarray by centrifugation. We obtained fluorescence images of Cy3 and Cy5 dye channels using a GenePix 4000B scanner (Axon Instruments, CA, USA).
Data analysis.  We used GenePix Pro 5.0 software (Axon Instruments) to determine the signal intensity of each spot and its local background. We calculated net signal intensity by subtracting the median signal intensity of all pixels within the local background area from the median signal intensity of all pixels within the spot area. We visually confirmed the correct recognition of all spot areas by the automatic alignment function of the GenePix Pro. We flagged spots and did not use them for data analysis when any of following occurred: (i) the GenePix Pro did not find the spot area automatically, (ii) the net signal intensity was <= 0, (iii) the percentage of saturated pixels in the spot area was >= 25, and (iv) severe noise was present. We normalized biases in signal intensity between the two fluorescent dye channels in a microarray by locally weighted linear regression analysis (lowess normalization) (Yang et al., Nucleic Acids Res. 30, e15) using MIDAS software (http://www.tigr.org/software/tm4/midas.html). For all normalization, we set the smoothing parameter to 0.33.

Keywords = circadian clock
Keywords = thermophilic cyanobacteria

source_name: LL2 (Cy3)


title: UET-13 Neural differentiated(2004/12/24)

status: Public on Dec 28 2004

type: RNA

city: Setagaya-ku

first: Akihiro

last: Umezawa

state: Tokyo

department: Center for Regenerative Medicine

country: Japan

institute: National Center for Child Health and Development

description: Human bone marrow-derived stromal cells

molecule: total RNA

organism: Homo sapiens

source_name: UET-13 Neural differentiated


title: F9 TSA sample #3

status: Public on Dec 27 2004

city: Albany

first: Niquiche

last: Sangster

state: NY

department: Biology

country: USA

institute: University at Albany

description: F9 cells were treated with TSA (0.07uM) for 24 hrs.  RNA was isolated using tri-reagent followed up with DNAse treatment and purified using an RNeasy spin column.  RNA was submitted to an Affymetrix core Microarray facility (Renselaer, NY) and was further processed according to Affymetrix protocol.

organism: Mus musculus

source_name: F9 embryonal Carcinoma cells


title: F9 RA sample #1

description: F9 cells were treated with RA (5 x 10-7 M) for 24 hrs.  RNA was isolated using tri-reagent followed up with DNAse treatment and purified using an RNeasy spin column.  RNA was submitted to an Affymetrix core Microarray facility (Renselaer, NY) and was further processed according to Affymetrix protocol.


title: 24 hours post 3h electrical pacing

status: Public on Dec 24 2004

city: Copenhagen

first: Peter

last: Schjerling

address: Bispebjerg Bakke 23, M81

department: Institute of Sports Medicine Copenhagen, ISMC

country: Denmark

institute: Bispebjerg Hospital

description: Mice with implanted pacer stimulated for 3 hours. Muscle harvested 24 hours after stimulation.

source_name: Skeletal muscle, 24 hours post stimulation ("P24")

source_name: Skeletal muscle, Control (reference, "Pre")


title: F9 RA sample #2


title: F9 con sample #2

description: F9 cells were treated with DMEM supplemented with etoh for 24hrs. RNA was harvested using Tri-reagent. RNA was Dnase treated and purified using RNeasy spin columns. Samples were submitted to Center for Functional genomics microarray core facility where they followed affymetrix hybridization protocol. Raw data was then entered into GeneSpring for Data analyzation


title: LL2-Cy3+LL14-Cy5 (expt 2)

status: Public on Dec 29 2004

city: Nagoya

first: Masahiro

last: Ishiura

state: Aichi

address: Furo-cho, Chikusa-ku

department: Gene Center

institute: Nagoya University

description:
Strain and culture conditions.  We grew wild-type T. elongatus (Yamaoka et al., Plant Cell Physiol. 19, 943-954) at 50oC under constant light from white fluorescent lamps at 38 micromol m-2 sec-1 (hereafter called LL conditions) in BG-11 liquid medium (Rippka et al., J. Gen. Microbiol. 111, 1-61) with bubbling of air containing 5% (v/v) CO2. We subjected the cells to 12 h of darkness to synchronize the circadian clock, and transferred them back to LL. We collected cells for RNA isolation at 2 h (LL2) and 14 h (LL14) after the transfer.
Microarray experiments.  We isolated total RNAs from two independent cultures by the hot-phenol method (Kucho et al., Genes Genet. Syst. 79, 189-197) and purified them using the SV total RNA isolation system (Promega, WI, USA). We used a mixture of the total RNAs from the two cultures for labeling reactions. We synthesized fluorescence-labeled cDNA by direct incorporation of Cy3-dUTP or Cy5-dUTP (Amersham Bioscience, NJ, USA) during random-primed reverse transcription, using 5.9 microgram total RNA and an RNA fluorescence labeling core kit (M-MLV version 2.0, TaKaRa, Japan). We prehybridized the microarray for 1 h at 42oC in a solution containing 5 X SSC (1 X SSC is 0.15 M NaCl, 0.015 M sodium citrate), 0.1% sodium lauryl sulfate (SDS), and 10 mg/ml bovine serum albumin. We washed the microarray at room temperature in distilled water 3 times for 1 min, rinsed it in 2-propanol, and dried it by centrifugation at 150 X g for 2 min. We performed hybridization for 16 h at 42oC in 12-mL solution containing 5 X SSC, 0.1% SDS, 30% formamide, and heat-denatured labeled cDNA. We then washed the microarray at room temperature with 2 X SSC containing 0.1% SDS for 4 min, with 0.1 X SSC containing 0.1% SDS for 4 min, and 3 times with 0.1 X SSC for 1 min. We dried the microarray by centrifugation. We obtained fluorescence images of Cy3 and Cy5 dye channels using a GenePix 4000B scanner (Axon Instruments, CA, USA).
Data analysis.  We used GenePix Pro 5.0 software (Axon Instruments) to determine the signal intensity of each spot and its local background. We calculated net signal intensity by subtracting the median signal intensity of all pixels within the local background area from the median signal intensity of all pixels within the spot area. We visually confirmed the correct recognition of all spot areas by the automatic alignment function of the GenePix Pro. We flagged spots and did not use them for data analysis when any of following occurred: (i) the GenePix Pro did not find the spot area automatically, (ii) the net signal intensity was <= 0, (iii) the percentage of saturated pixels in the spot area was >= 25, and (iv) severe noise was present. We normalized biases in signal intensity between the two fluorescent dye channels in a microarray by locally weighted linear regression analysis (lowess normalization) (Yang et al., Nucleic Acids Res. 30, e15) using MIDAS software (http://www.tigr.org/software/tm4/midas.html). For all normalization, we set the smoothing parameter to 0.33.
Keywords = circadian clock
Keywords = thermophilic cyanobacteria

organism: Thermosynechococcus vestitus BP-1


title: HSF1 wt replicate 2

city: Kanazawa

first: Hiroshi

last: Sakurai

state: Ishikawa

address: 5-11-80 Kodatsuno

department: School of Health Sciences

institute: Kanazawa University

description:
Total RNA isolated from HSF1 wt cells grown at 39oC for 15 min. cDNA labelling using oligo(dT) and 33P-dCTP
Keywords = yeast
Keywords = HSF1
Lot batch = HSF1 wt replicate 2

organism: Saccharomyces cerevisiae

source_name: HSF1 wt cells grown at 39oC for 15 min


title: Sham control

description: Sham operated mice with implanted but inactive pacer. Muscles harvested at same timepoint as immediately post stimulation for stimulated mice.

source_name: Skeletal muscle, Sham operated


title: 1 hour post 3h electrical pacing

description: Mice with implanted pacer stimulated for 3 hours. Muscle harvested one hour after stimulation.

source_name: Skeletal muscle, 1 hour post stimulation ("P1")


title: hsf1-R206S/F256S replicate 2

description:
Total RNA isolated from hsf1-R206S/F256S cells grown at 39oC for 15 min. cDNA labelling using oligo(dT) and 33P-dCTP
Keywords = yeast
Keywords = HSF1
Lot batch = hsf1-rf replicate 2


title: hsf1-R206S/F256S replicate 1

description:
Total RNA isolated from hsf1-R206S/F256S cells grown at 39oC for 15 min. cDNA labelling using oligo(dT) and 33P-dCTP
Keywords = yeast
Keywords = HSF1
Lot batch = hsf1-rf replicate 1


title: F9 con sample #3


title: H4-1(2004/12/24)

description: Human bone marrow-derived stromal cells

source_name: H4-1 cells


title: F9 TSA sample #2


title: 3 hours post 3h electrical pacing

description: Mice with implanted pacer stimulated for 3 hours. Muscle harvested three hours after stimulation.

source_name: Skeletal muscle, 3 hours post stimulation ("P3")


title: HSF1 wt replicate 1

description:
Total RNA isolated from HSF1 wt cells grown at 39oC for 15 min. cDNA labelling using oligo(dT) and 33P-dCTP
Keywords = yeast
Keywords = HSF1
Lot batch = HSF1 wt replicate 1


title: F9 TSA sample #1


title: UET-13(2004/12/24)

description: Human bone marrow-derived stromal cells

source_name: UET-13 cells


title: F9 con sample #1


title: 0 hours post 3h electrical pacing

description: Mice with implanted pacer stimulated for 3 hours. Muscle harvested immediately after stimulation.

source_name: Skeletal muscle, 0 hours post stimulation ("P0")


title: 8 hours post 3h electrical pacing

description: Mice with implanted pacer stimulated for 3 hours. Muscle harvested eight hours after stimulation.

source_name: Skeletal muscle, 8 hours post stimulation ("P8")


title: F9 RA sample #3


title: Dye-reversal of 6 week smoke vs 1 week control

status: Public on Dec 23 2004

city: Dallas

first: John

middle: G

last: Maresh

state: TX

address: 5323 Harry Hines

department: Internal Medicine

institute: U.T. Southwestern Medical Center

description: Endothelium from 6-week smoke-exposed mice vs 1 week control, Dye-reversal

source_name: 6 week smoke

source_name: 1 week control


title: endothelium, 1 week smoked vs. control

description: Sorted endothelial cells from smoked vs. control mice

source_name: Smoke

source_name: Control


title: spo-cta-arr1-pre

status: Public on Dec 22 2004

city: San Juan

first: Humberto

last: Ortiz-Zuazaga

state: PR

address: PO BOX 23334

department: High Performance Computing facility

institute: University of Puerto Rico

description: Conditioned Taste Aversion experiment, array 1, pretreatment.

organism: Rattus norvegicus

source_name: brain, amygdala


title: CD1 strain salivary

city: Toronto

first: Qun

last: Pan

address: 160 College St.

country: Canada

institute: University of Toronto

description:
We describe the application of a new microarray platform, which combines information from exon body and splice-junction probes, to analyze the regulation of 3126 alternative splicing events in ten mouse tissues. The details of the methods and algorithms are described in this paper: Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform (Molecular Cell, Dec., 2004)
Keywords = A new quantitative alternative splicing microarray platform

source_name: Pooled mouse CD1 strain salivary


title: Smoke vs control, 6 week

description: Endothelium from 6-week smoke-exposed mice vs 1 week control

source_name: Smoke 6 week

source_name: Control 1 week


title: CD1 strain testis

source_name: Pooled mouse CD1 strain testis


title: Time Course Experiment after HO induction. Time (4h) Sup fraction

city: Bunkyo-ku

first: Katsuhiko

last: Shirahige

address: 1-1-1 Yayoi

department: Research Center for Epigenetic Disease

institute: The University of Tokyo

description: Time course experiment after HO induction (4h). Sup fraction used for normalization of GSM34578.

source_name: S. cerevisiae


title: endothelium,1 week smoke vs. control, dye-reversal

source_name: Smoked


title: Time Course Experiment after HO induction. Time (4h) ChIP fraction

description: Time course experiment after HO induction (4h).


description: Time Course Experiment after HO induction. Time (2h) Sup fraction used for normalization of GSM34576.


title: CD1 strain lung

source_name: Pooled mouse CD1 strain lung


description: Time Course Experiment after HO induction. Time (2h) ChIP fraction.


title: Time Course Experiment after HO induction. Time (0h) Chip fraction (II)

description: Time Course Experiment after HO induction. Time (0h) ChIP fraction (II). Only data for time (0h) are duplicated.


title: Sup fraction of Time (0h)

description: Time Course Experiment after HO induction. Time (0h) Sup fraction used for normalization of GSM34573 and GSM34574.


title: Sup fraction after ChIP (4h)

description: Sup fraction (4h) used for the normalization of GSM34232 and GSM34233.


title: Sup fraction after ChIP (0h)

description: Sup fraction (0h) used for the normalization of GSM34215 and GSM34227.


title: CD1 strain heart

source_name: Pooled mouse CD1 strain heart


title: FHL1, IFH1 double deletion (first experiment)

city: Bronx

first: Jonathan

middle: R.

last: Warner

department: Department of Cell Biology

institute: Albert Einstein College of Medicine

description: FHL1, IFH1 double deleted strain, grown in 30 degrees and total RNA was isolated from them.

source_name: Yeast total RNA.


title: CD1 strain spleen

source_name: Pooled mouse CD1 strain spleen


description: Time Course Experiment after HO induction. Time (0h) ChIP fraction (I).


title: CD1 strain muscle

source_name: Pooled mouse CD1 strain muscle


title: Smoke vs. control, 6 week

description: Endothelium from 6-week smoke-exposed mice vs 6 week control


title: FHL1, IFH1 double deleted strain (second experiment)


title: CD1 strain intestine

source_name: Pooled mouse CD1 strain intestine


title: Delta FHL1 (first experiment)

description: FHL1 deleted strain, grown in 30 degrees and total RNA was isolated from them.


title: Binding Profile of Scc1 on chr3,4,5, and 6 (4h after induction) Exp2

description: After 4h of HO induction. Scc1 chromatin -immunoprecipitation fraction. Exp2.


title: Sup fraction after mock ChIP

description: Sup fraction of Mock ChIP experiment using strain without tag. Sup fraction used for normalization of GSM34571


title: Binding Profile of Scc1 on chr3,4,5, and 6 (4h after induction) Exp1

description: After 4h of HO induction. Scc1 chromatin -immunoprecipitation fraction. Exp1.


title: CD1 strain brain

description:
We describe the application of a new microarray platform, which combines information from exon body and splice-junction probes, to analyze the regulation of 3126 alternative splicing events in diverse mouse tissues. The details of the methods and algorithms are described in this paper: Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform (Molecular Cell, Dec., 2004)
Keywords = A new quantitative alternative splicing microarray platform

source_name: Pooled mouse CD1 strain brain


title: Delta FHL1 (second experiment)

source_name: Yeast total RNA


title: Binding Profile of Scc1 on chr3,4,5, and 6 (0h after induction) Exp2

description: 0h after HO induction. Chromatin-immunoprecipitation by Scc1.


title: WT (second experiment)

description: Wild type cells, grown in 30 degrees and total RNA was isolated from them.


title: Mock ChIP

description: Mock ChIP experiment using strain without tag.


title: CD1 strain kidney

description:
We describe the application of a new microarray platform, which combines information from exon body and splice-junction probes, to analyze the regulation of 3126 alternative splicing events in ten mouse tissues. The details of the methods and algorithms are described in this paper: Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform (Molecular Cell, Dec., 2004)
Keywords = A new quantitative alternative splicing microarray platform

source_name: Pooled mouse CD1 strain kidney


title: CD1 strain liver

description:
We describe the application of a new microarray platform, which combines information from exon body and splice-junction probes, to analyze the regulation of 3126 alternative splicing events in ten mouse tissues. The details of the methods and algorithms are described in this paper: Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform (Molecular Cell, Dec., 2004)
Keywords = A new quantitative alternative splicing microarray platform
Lot batch =

source_name: Pooled mouse CD1 strain liver


title: Wild type (first experiment)

description: Wild type cells, grown in 30 degrees and total RNA was isolated from the.

source_name: Total RNA from yeast


title: 406A

status: Public on Dec 20 2004

city: Aberdeen Proving Ground

first: James

middle: F

last: Dillman

state: MD

address: 3100 Ricketts Point Rd

department: Cell and Molecular Biology Branch

institute: U.S. Army Medical Research Institute of Chemical Defense

description:
sulfur mustard exposed rat lung
saline vehicle
0 mg sulfur mustard
30 min
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide

source_name: lung


title: 398A


title: 404B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
3 mg sulfur mustard
24 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 401A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
3 mg sulfur mustard
30 min
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 403A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
0 mg sulfur mustard
30 min
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 402B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
6 mg sulfur mustard
30 min
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 405A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
6 mg sulfur mustard
30 min
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 406B

description:
sulfur mustard exposed rat lung
saline vehicle
0 mg sulfur mustard
30 min
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: Binding Profile of Scc1 on chr3,4,5, and 6 (0h after induction) Exp1

description: 0 hour after HO induction. Chromatin-immunoprecipitation fraction by Scc1. 1st.


title: mouse reference pRS 0.3 ng -3

status: Public on Dec 21 2004

city: Manhattan

first: Philine

last: Wangemann

state: KS

address: 1600 Dension Avenue

department: Anatomy and Physiology

institute: Kansas State University

description:
Universal Mouse Reference RNA from Strategene
This sample is also known as MUR pRS 0.3ng
Keywords = Universal mouse reference RNA
Keywords = mur pRS 0.3ng

source_name: Universal RNA


title: 400A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
1 mg sulfur mustard
30 min
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: GGills

city: Leiden

first: Christoph

middle: Peter

last: Bagowski

country: Netherlands

institute: Leiden University

description:
labeling:
Cy5 = Hypoxia
Cy3 = Normoxia

organism: Danio rerio

source_name: Gills


title: 405B


title: GsGills

description:
labeling:
Cy3 = hypoxia
Cy5 = normoxia


title: 398B


title: 396B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
3 mg sulfur mustard
30 min
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 402A


title: 396A


title: 404A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
3 mg sulfur mustard
24 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 395A


title: 395B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
1 mg sulfur mustard
30 min
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 397A


title: 400B


title: 403B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
0 mg sulfur mustard
30 min
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: endothelium, 1 wk smoke vs. control

description: Sorted endothelial cells from smoked vs. control mice

source_name: Smoke

source_name: Control


title: 397B


title: FsGills

description:
labeling:
Cy3 = Hypoxia
Cy5 = Normoxia


title: AGills

description:
Gill RNA labeling:
Cy3: Hypoxia
Cy5: Normoxia


title: AsGills

description:
labeling:
Cy3: Hypoxia
Cy5: Normoxia


title: 392A


title: 390A


title: 387B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
6 mg sulfur mustard
1 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 387A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
6 mg sulfur mustard
1 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 385A


title: 392B


title: 386A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
0 mg sulfur mustard
1 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 384A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
3 mg sulfur mustard
1 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 393A

description:
sulfur mustard exposed rat lung
saline vehicle
0 mg sulfur mustard
30 min
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 391A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
3 mg sulfur mustard
30 min
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 394B


title: 391B


title: 390B


title: 388B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
1 mg sulfur mustard
1 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 381B

description:
sulfur mustard exposed rat lung
saline vehicle
0 mg sulfur mustard
1 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 393B

description:
sulfur mustard exposed rat lung
saline vehicle
0 mg sulfur mustard
30 min
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 385B


title: 388A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
1 mg sulfur mustard
1 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 389B


title: 394A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
0 mg sulfur mustard
30 min
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 382B


title: 384B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
3 mg sulfur mustard
1 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 389A


title: 382A


title: 386B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
0 mg sulfur mustard
1 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 379A


title: 401B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
3 mg sulfur mustard
30 min
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 379B


title: 378B


title: 381A

description:
sulfur mustard exposed rat lung
saline vehicle
0 mg sulfur mustard
1 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 378A


title: 377B


title: 377A


title: 376A


title: 375B


title: 362B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
0 mg sulfur mustard
3 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 372A


title: 375A


title: 363A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
3 mg sulfur mustard
3 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 373A


title: 363B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
3 mg sulfur mustard
3 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 359B


title: 362A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
0 mg sulfur mustard
3 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 361A

description:
sulfur mustard exposed rat lung
saline vehicle
0 mg sulfur mustard
3 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 371A


title: 366B

description:
sulfur mustard exposed rat lung
saline vehicle
0 mg sulfur mustard
3 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 360B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
6 mg sulfur mustard
3 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 361B


title: 376B


title: 366A


title: 372B


title: 371B


title: 374B


title: 360A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
6 mg sulfur mustard
3 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 374A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
3 mg sulfur mustard
1 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 358B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
1 mg sulfur mustard
3 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 357A


title: 358A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
1 mg sulfur mustard
3 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 359A


title: 355A


title: 357B


title: 353B


title: 354A


title: 355B


title: 342B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
0 mg sulfur mustard
6 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 343B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
6 mg sulfur mustard
6 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 353A


title: 343A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
6 mg sulfur mustard
6 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 352B


title: 350B


title: 352A


title: 340B


title: 354B


title: 351A


title: 340A


title: 342A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
0 mg sulfur mustard
6 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 351B


title: 339B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
3 mg sulfur mustard
6 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 341B

description:
sulfur mustard exposed rat lung
saline vehicle
0 mg sulfur mustard
6 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 341A

description:
sulfur mustard exposed rat lung
saline vehicle
0 mg sulfur mustard
6 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 336B


title: 339A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
3 mg sulfur mustard
6 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 337B


title: 338B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
1 mg sulfur mustard
6 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 350A


title: 338A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
1 mg sulfur mustard
6 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 337A


title: 336A


title: 334A


title: 335B


title: 335A


title: 334B


title: 333B


title: 332B


title: 328B


title: 330A


title: 329A


title: 320B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
6 mg sulfur mustard
24 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 333A


title: RT_WT_15

first: Rolf

last: Turk

address: Wassenaarseweg 72

department: Center for Human and Clinical Genetics

institute: Leiden University Medical Center

description: Wildtype timecourse microarray data

source_name: WT t=8wks individual B

source_name: WT t=10wks individual B


title: 332A


title: RT_WT_08

description: Wildtype timecourse microarray data

source_name: WT t=12wks individual A

source_name: WT t=14wks individual A


title: RT_WT_10

description: Wildtype timecourse microarray data

source_name: WT t=20wks individual A

source_name: WT t=1wk individual B


title: RT_WT_18

description: Wildtype timecourse microarray data

source_name: WT t=14wks individual B

source_name: WT t=20wks individual B


title: 331A


title: 319B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
3 mg sulfur mustard
24 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 328A


title: 331B


title: RT_WT_17

description: Wildtype timecourse microarray data

source_name: WT t=12wks individual B


title: RT_WT_14

description: Wildtype timecourse microarray data

source_name: WT t=6wks individual B


title: RT_WT_07

description: Wildtype timecourse microarray data

source_name: WT t=10wks individual A


title: 329B


title: RT_WT_12

description: Wildtype timecourse microarray data

source_name: WT t=2.5wks individual B

source_name: WT t=4wks individual B


title: RT_WT_09

description: Wildtype timecourse microarray data


title: RT_WT_16

description: Wildtype timecourse microarray data


title: RT_WT_06

description: Wildtype timecourse microarray data

source_name: WT t=8wks individual A

source_name: WT t=10 wks individual A


title: RT_WT_13

description: Wildtype timecourse microarray data


title: 320A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
6 mg sulfur mustard
24 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide

source_name: lung


title: RT_WT_11

description: Wildtype timecourse microarray data


title: RT_WT_05

description: Wildtype timecourse microarray data

source_name: WT t=6wks individual A


title: 317B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
0 mg sulfur mustard
24 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 373B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
1 mg sulfur mustard
1 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 316A

description:
sulfur mustard exposed rat lung
saline vehicle
0 mg sulfur mustard
24 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 315B


title: RT_WT_01

description: Wildtype timecourse microarray data

source_name: WT t=1wk individual A


title: RT_WT_03

description: Wildtype timecourse microarray data

source_name: WT t=2.5wks individual A

source_name: WT t=4wks individual A


title: 318B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
1 mg sulfur mustard
24 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 314B


title: 315A


title: 317A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
0 mg sulfur mustard
24 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: RT_MDX_16

description: Timecourse experiment, loop design, mdx

source_name: MDX t=14wks individual B

source_name: MDX t=12wks individual B


title: RT_WT_04

description: Wildtype timecourse microarray data


title: RT_WT_02

description: Wildtype timecourse microarray data


title: 313B


title: RT_MDX_15

description: Timecourse experiment, loop design, mdx

source_name: MDX t=10wks individual B


title: 313A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
1 mg sulfur mustard
24 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 314A

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
3 mg sulfur mustard
24 hr
chip replicate A
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: RT_MDX_10

description: Timecourse experiment, loop design, mdx

source_name: MDX t=2.5wks individual B

source_name: MDX t=1wk individual B


title: RT_MDX_11

description: Timecourse experiment, loop design, mdx

source_name: MDX t=4wks individual B


title: RT_MDX_12

description: Timecourse experiment, loop design, mdx

source_name: MDX t=6wks individual B


title: RT_MDX_13

description: Timecourse experiment, loop design, mdx

source_name: MDX t=8wks individual B

source_name: MDX t-6wks individual B


title: RT_MDX_09

description: Timecourse experiment, loop design, mdx

source_name: MDX t=20wks individual A


title: RT_MDX_18

description: Timecourse experiment, loop design, mdx

source_name: MDX t=1wk individual A

source_name: MDX t=20wks individual B


title: RT_MDX_17

description: Timecourse experiment, loop design, mdx


title: RT_MDX_14

description: Timecourse experiment, loop design, mdx


title: 312A

source_name: lung


title: 330B

description:
sulfur mustard exposed rat lung
isopropyl alcohol vehicle
6 mg sulfur mustard
3 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 308A


title: Cyclosporine A 48hr treatment sample

city: Dublin

first: Craig

last: Slattery

country: Ireland

institute: Conway Institute

description: 48hr tretment Array in timecourse of Cyclosporine A effects on HK-2 cells

source_name: HK-2 human renal proximal tubular epithelial cell line


title: 308B


title: 307B


title: 311B

description:
sulfur mustard exposed rat lung
saline vehicle
0 mg sulfur mustard
24 hr
chip replicate B
Keywords = sulfur mustard, lung, chemical warfare agent, alkylating agent, bis-(2-chloroethyl) sulfide


title: 310A


title: 310B


title: RT_MDX_07

description: Timecourse experiment, loop design, mdx

source_name: MDX t=14wks individual A

source_name: MDX t=12wks individual A


title: 306B


title: Cyclosporine A 12hr treatment

description: 12hr tretment Array in timecourse of Cyclosporine A effects on HK-2 cells


title: 307A


title: 319A


title: RT_MDX_08

description: Timecourse experiment, loop design, mdx


title: RT_MDX_06

description: Timecourse experiment, loop design, mdx

source_name: MDX t=10wks individual A


title: 312B


title: 311A


title: RT_MDX_05

description: Timecourse experiment, loop design, mdx

source_name: MDX t=8wks individual A


title: RT_MDX_03

description: Timecourse experiment, loop design, mdx

source_name: MDX t=6wks individual A

source_name: MDX t=4wks individual A


title: Cyclosporine-A Control Sample

description: Control Array in timecourse of Cyclosporine A effects on HK-2 cells

source_name: HK-2 human renal proximal tubular epithelial cells


title: 8 hour tunicamycin CHOP-/- C

status: Public on Dec 17 2004

city: New York

first: Stefan

last: Marciniak

department: Molecular Pathogenesis

institute: Skirball

description: Time course experiment of tunicamycin effect (2 microgram/ml)

source_name: primary MEFs


title: 8 hour tunicamycin CHOP-/- B


title: 316B


title: 306A


title: 8 hour tunicamycin CHOP-/- D


title: RT_MDX_02

description: Timecourse experiment, loop design, mdx

source_name: MDX t=2.5wks individual A


title: RT_MDX_01

description: Timecourse experiment, loop design, mdx


title: 8 hour tunicamycin wild type C


title: 8 hour tunicamycin wild type D


title: RT_MDX_04

description: Timecourse experiment, loop design, mdx

source_name: MDX t=6wks indivdual A


title: 318A


title: 4 hour tunicamycin CHOP-/- D


title: 4 hour tunicamycin CHOP-/- C


title: 4 hour tunicamycin CHOP-/- B


title: Untreated CHOP-/- A

description: Time course experiment of tunicamycin effect


title: 4 hour tunicamycin wild type C


title: Untreated CHOP-/- C


title: 4 hour tunicamycin wild type B


title: 4 hour tunicamycin wild type A


title: 8 hour tunicamycin wild type B


title: Untreated CHOP-/- B


title: Untreated wild type D


title: 8 hour tunicamycin CHOP-/- A


title: Untreated wild type B

description: pass 3 primary mefs

source_name: wild type primary mef


title: Untreated wild type C

description: pass 3 primary mefs


title: 4 hour tunicamycin wild type D


title: Untreated CHOP-/- D


title: 4 hour tunicamycin CHOP-/- A


title: Untreated wild type A

description: pass 3 primary mefs


title: B chip no foreskolin replicate 1

status: Public on Dec 16 2004

city: Portland

first: Soren

last: Impey

state: OR

institute: Vollum Institute

description:
A comparison of foreskolin-induced mRNA vs. an inactive control in the rat PC12 cell pheochromocytoma cell line.
Keywords = PC12
Keywords = Foreskolin


title: B chip foreskolin replicate 2

source_name: A comparison of foreskolin-induced mRNA vs. an inactive control in the rat PC12 cell pheochromocytoma cell line.


title: A chip foreskolin replicate 1


title: A chip foreskolin replicate 2


title: B chip no foreskolin replicate 2


title: B chip foreskolin replicate 1


title: delta mlp1 3

city: Burjassot

first: Jose

middle: E.

last: Perez-Ortin

state: Valencia

address: Dr. Moliner 50

department: Bioquimica y Biologia Molecular

country: Spain

institute: Universitat de Valencia

description:
Total RNA isolated from a exponentially growing culture of mlp1 mutant yeast cells. cDNA labelling using oligo(dT)15VN and 33P-dCTP.
Keywords = yeast
Keywords = MLP1

source_name: Exponentially growing mlp1 mutant yeast strain


title: A chip no foreskolin replicate 2


title: delta mlp1 2


title: dmyc overexpression 14h-4

city: Seattle

first: Ling

last: Li

state: WA

address: 1100 Fairview Ave. N.

department: Basic Sciences

institute: Fred Hutchinson Cancer Research Center

description: Total RNA was isolated 14h after 2h of heat shock.

organism: Drosophila melanogaster

source_name: yw, hs-FLP122; Act-GAL4, UAS-GFP; UAS-dMyc

source_name: yw, hs-FLP122; Act-GAL4, UAS-GFP; +


title: dmyc overexpression 7h-5

description: Total RNA was isolated 7h after 2h of heat shock.


title: dmyc overexpression 7h-1

source_name: ywhs-FLP122; Act-GAL4, UAS-GFP; +

source_name: hs-FLP122; Act-GAL4, UAS-GFP; UAS-dMyc


title: dmyc overexpression 14h-3


title: dmyc 7-3


title: dmyc overexpression 7h-2


title: Slide 8071

city: Bar Harbor

first: Ioannis

middle: M

last: Stylianou

state: ME

address: 600 Maine Street

institute: The Jackson Laboratory

description: Brown adipose tissue (BAT) comparison between F-line and F-line

source_name: BAT Fob3b-line Pool1 (green)

source_name: BAT F-line Pool1 (red)


title: 8 hour tunicamycin wild type A


title: Slide 8072

source_name: BAT F-line Pool1 (green)

source_name: BAT Fob3b-line Pool1 (red)


title: dmyc overexpression 7h-4


title: delta mlp1 1


title: dmyc overexpression 14h-1


title: dmyc overexpression 14h-2


title: Slide 8074

description: Liver comparison between F-line and F-line (self:self cross pool)

source_name: Liver F-line Pool1 (green)

source_name: Liver F-line Pool2 (red)


title: ENCODE: MeH3K4-IMR90 Rep3

type: genomic

city: San Diego

first: Chunxu

last: Qu

state: CA

department: Gene Regulation

institute: Ludwig Institute for Cancer Research

description:
Genome-wide location analysis of dimethylated K4 histone 3 binding at ENCODE regions in IMR90 cells. Replicate 3 of 3.  Array ID in the lab is ENC251.
Keywords = ENCODE, ChIP-on-Chip, dimethylated K4 histone 3

molecule: genomic DNA

source_name: Chromatin immunoprecipitated DNA using MeH3K4 antibody

source_name: input DNA


title: Slide 8075

description: Liver comparison between F-line and Fob3b-line (cross pool)

source_name: Liver Fob3b-line Pool1 (green)


title: Slide 8094

description: Brown adipose tissue (BAT) comparison between Fob3b-line and F-line

source_name: BAT Fob3b-line Pool2 (green)

source_name: BAT F-line Pool2 (red)


title: ENCODE: MeH3K4-IMR90 Rep2

description:
Genome-wide location analysis of dimethylated K4 histone 3 binding at ENCODE regions in IMR90 cells. Replicate 2 of 3.  Array ID in the lab is ENC250.
Keywords = ENCODE, ChIP-on-Chip, dimethylated K4 histone 3


title: Slide 8095

source_name: BAT F-line Pool2 (green)

source_name: BAT Fob3b-line Pool2 (red)


title: Slide 8076

source_name: Liver Fob3b-line Pool2 (red)


title: Slide 8088


title: Slide 8069

description: Liver comparison between F-line and Fob3b-line

source_name: Liver Fob3b-line Pool2 (green)


title: ENCODE: MeH3K4-IMR90 Rep1

description:
Genome-wide location analysis of dimethylated K4 histone 3 binding at ENCODE regions in IMR90 cells. Replicate 1 of 3.  Array ID in the lab is ENC051.
Keywords = ENCODE, ChIP-on-Chip, dimethylated K4 histone 3


title: Slide 8070

source_name: Liver F-line Pool2 (green)


title: Slide 8089


title: HCV_Control_3

status: Public on Dec 15 2004

city: Davis

first: Michael

last: George

address: 451 Health Sciences Drive

department: Medical Microbiology and Immunology

institute: University of California, Davis

description: dChip expression analysis (PM only) of HepG2 human liver cell line untransfected - replicate 3


title: Slide 8073

description: Liver comparison between Fob3b-line and Fob3b-line (self:self cross pool)


title: Slide 8097

description: Liver comparison between Fob3b-line and F-line  self-self

source_name: Liver Fob3b-line Pool1 (red)


title: Slide 8096

description: Liver comparison between F-line and F-line  self-self

source_name: Liver F-line Pool1 (red)


title: HCV_Control_1

description: dChip expression analysis (PM only) of HepG2 human liver cell line untransfected - replicate 1


title: ENCODE: AcH3-IMR90 Rep3

description:
Genome-wide location analysis of acetylated histone 3 binding at ENCODE regions in IMR90 cells. Replicate 3 of 3.  Array ID in the lab is ENC249.
Keywords = ENCODE, ChIP-on-Chip, acetylayed histone 3

source_name: Chromatin immunoprecipitated DNA using AcH3 antibody


title: A chip no foreskolin replicate 1

description:
A comparison of foreskolin-induced mRNA vs. an inactive control in the rat PC12 cell pheochromocytoma cell line.
Keywords = PC12
Keywords = Foreskolin


title: -Leu t=17

city: Chicago

first: Kimberly

last: Dittmar

state: IL

department: Biochemistry and Molecular Biology

institute: University of Chicago

description: The ratios represent the ratio of charged to total tRNA in an E. coli sample at time 17 minutes after leucine starvation

organism: Escherichia coli

source_name: -Leu t=17 charged

source_name: -Leu t=17 total


title: Slide 8093


title: Slide 8092

source_name: Liver F-line Pool1 (green)


title: ENCODE: AcH3-IMR90 Rep1

description:
Genome-wide location analysis of acetylated histone 3 binding at ENCODE regions in IMR90 cells. Replicate 1 of 3.  Array ID in the lab is ENC049.
Keywords = ENCODE, ChIP-on-Chip, acetylayed histone 3


title: Slide 8065


title: -Leu t=7

description: The ratios represent the ratio of charged to total tRNA in an E. coli sample at time 7 minutes after leucine starvation

source_name: -Leu t=7 charged

source_name: -Leu t=7 total


title: -Leu t=2

description: The ratios represent the ratio of charged to total tRNA in an E. coli sample at time 2 after leucine starvation

source_name: -Leu t=2 charged

source_name: -Leu t=2 total


title: -Leu t=0

description: The ratios represent the ratio of charged to total tRNA in an E. coli sample at time 0 before leucine starvation

source_name: -Leu t=0 charged

source_name: -Leu t=0 total


title: HCV_Core_1

description: dChip expression analysis (PM only) of HepG2 human liver cell line following transfection of Hepatitis C Core protein - replicate 1


title: HCV_Core_3

description: dChip expression analysis (PM only) of HepG2 human liver cell line following transfection of Hepatitis C Core protein - replicate 3


title: 251271910012_S01_1_4_polarity0_red:FetalHeart_green:FetalHeart

status: Public on Dec 14 2004

city: Palo Alto

first: Svetlana

last: Shchegrova

institute: Agilent Technologies, Inc

description:
Fetal Heart and Adult Heart commercial polyA RNA samples
Amplified and labeled according to standard Agilent protocols
Data processed with FeatureExtraction v7.5, only good features are reported (no saturated or outliers)
Keywords = Adult Heart, Fetal Heart, Agilent

source_name: Fetal Heart labeled with Cy5

source_name: Fetal Heart labeled with Cy3


title: -Leu t=32

description: The ratios represent the ratio of charged to total tRNA in an E. coli sample at time 32 minutes after leucine starvation

source_name: -Leu t=32 charged

source_name: -Leu t=32 total


title: 251271910012_S01_2_4_polarity-1_red:AdultHeart_green:FetalHeart

source_name: Adult Heart labeled with Cy5


title: 251271910011_S01_2_3_polarity1_red:FetalHeart_green:AdultHeart

source_name: Adult Heart labeled with Cy3


title: 251271910012_S01_2_3_polarity1_red:FetalHeart_green:AdultHeart


title: 251271910012_S01_1_3_polarity-1_red:AdultHeart_green:FetalHeart


title: 251271910012_S01_1_2_polarity1_red:FetalHeart_green:AdultHeart


title: 251271910012_S01_1_1_polarity0_red:AdultHeart_green:AdultHeart


title: HCV_Core_2

description: dChip expression analysis (PM only) of HepG2 human liver cell line following transfection of Hepatitis C Core protein - replicate 2


title: 251271910012_S01_2_2_polarity-1_red:AdultHeart_green:FetalHeart


title: Slide 8068

description: Liver comparison between F-line and Fob3b-line

source_name: Liver Fob3b-line Pool1 (red)


title: Slide 8091

source_name: Liver Fob3b-line Pool2 (green)

source_name: Liver F-line Pool2 (red)


title: 251271910011_S01_2_2_polarity1_red:FetalHeart_green:AdultHeart


title: 251271910011_S01_2_1_polarity-1_red:AdultHeart_green:FetalHeart


title: 251271910012_S01_2_1_polarity1_red:FetalHeart_green:AdultHeart


title: 251271910011_S01_1_4_polarity0_red:AdultHeart_green:AdultHeart


title: 251271910011_S01_1_3_polarity1_red:FetalHeart_green:AdultHeart


title: 251271910011_S01_1_2_polarity1_red:FetalHeart_green:AdultHeart


title: 251271910011_S01_1_1_polarity1_red:FetalHeart_green:AdultHeart


title: 251271910010_S01_2_3_polarity1_red:FetalHeart_green:AdultHeart


title: 251271910010_S01_1_4_polarity0_red:AdultHeart_green:AdultHeart


title: 251271910010_S01_2_4_polarity1_red:FetalHeart_green:AdultHeart


title: 251271910010_S01_2_2_polarity1_red:FetalHeart_green:AdultHeart


title: 251271910010_S01_1_1_polarity-1_red:AdultHeart_green:FetalHeart


title: 251271810008_S01_2_1_polarity-1_red:AdultHeart_green:FetalHeart


title: 251271910010_S01_1_2_polarity-1_red:AdultHeart_green:FetalHeart


title: 251271910010_S01_2_1_polarity0_red:FetalHeart_green:FetalHeart


title: 251271810008_S01_1_2_polarity1_red:FetalHeart_green:AdultHeart


title: 251271910010_S01_1_3_polarity-1_red:AdultHeart_green:FetalHeart


title: 251271810008_S01_1_3_polarity1_red:FetalHeart_green:AdultHeart


title: 251271810008_S01_2_4_polarity0_red:FetalHeart_green:FetalHeart


title: 251271810008_S01_2_3_polarity1_red:FetalHeart_green:AdultHeart


title: 251271810007_S01_2_3_polarity1_red:FetalHeart_green:AdultHeart


title: 251271810008_S01_1_4_polarity0_red:AdultHeart_green:AdultHeart


title: ENCODE: AcH3-IMR90 Rep2

description:
Genome-wide location analysis of acetylated histone 3 binding at ENCODE regions in IMR90 cells. Replicate 2 of 3.  Array ID in the lab is ENC248.
Keywords = ENCODE, ChIP-on-Chip, acetylayed histone 3

source_name: Chromatin immunoprecipitated DNA using AcH3 antibody

source_name: input DNA


title: 251271810008_S01_2_2_polarity1_red:FetalHeart_green:AdultHeart


title: 251271810007_S01_2_4_polarity1_red:FetalHeart_green:AdultHeart


title: 251271810008_S01_1_1_polarity1_red:FetalHeart_green:AdultHeart


title: 251271810007_S01_2_2_polarity1_red:FetalHeart_green:AdultHeart


title: 251271810007_S01_2_1_polarity0_red:FetalHeart_green:FetalHeart


title: 251271810007_S01_1_4_polarity0_red:AdultHeart_green:AdultHeart


title: Slide 8067

source_name: Liver Fob3b-line Pool1 (green)

source_name: Liver F-line Pool1 (red)


title: 251271810006_S01_2_2_polarity-1_red:AdultHeart_green:FetalHeart


title: 251271810006_S01_2_4_polarity-1_red:AdultHeart_green:FetalHeart


title: 251271810007_S01_1_2_polarity-1_red:AdultHeart_green:FetalHeart


title: 251271810007_S01_1_3_polarity-1_red:AdultHeart_green:FetalHeart


title: 251271810006_S01_2_1_polarity1_red:FetalHeart_green:AdultHeart


title: 251271810006_S01_2_3_polarity1_red:FetalHeart_green:AdultHeart


title: 251271810006_S01_1_4_polarity0_red:FetalHeart_green:FetalHeart


title: 251271810006_S01_1_3_polarity-1_red:AdultHeart_green:FetalHeart


title: 251271810006_S01_1_2_polarity1_red:FetalHeart_green:AdultHeart


title: 251271810007_S01_1_1_polarity-1_red:AdultHeart_green:FetalHeart


title: 251271810006_S01_1_1_polarity0_red:AdultHeart_green:AdultHeart


title: Side population CD45+ cells of E17.5 lung-sample 3, subset 3

status: Public on Dec 11 2004

city: Boston

first: Simon

middle: Xun

last: Liang

state: MA

address: 80 East Concord ST

department: Pulmonary Center

institute: Boston University School of Medicine

description: Side population CD45+ cells were isolated by FACS from digested E17.5 mouse lung.

source_name: Digested lung


title: Main population CD45- cells of E17.5 lung-sample3

description: Main population CD45- cells were isolated by FACS from digested E17.5 mouse lung.


title: Side population CD45- cells of E17.5 lung-sample3

description: Side population CD45- cells were isolated by FACS from digested E17.5 mouse lung.


title: Side population CD45- cells of E17.5 lung-sample2


title: Side population CD45+ cells of E17.5 lung-sample 3, subset 2


title: Side population CD45+ cells of E17.5 lung-sample1


title: Main population CD45- cells of E17.5 lung-sample2


title: Main population CD45+ cells of E17.5 lung-sample1

description: Main population CD45+ cells were isolated by FACS from digested E17.5 mouse lung.


title: Main population CD45+ cells of E17.5 lung-sample3


title: Main population CD45- cells of E17.5 lung-sample1


title: IL-15+IL-21 5

city: Bethesda

first: John

last: Brady

institute: NCI

description: naive CD8 T cells treated 4 hours with IL-15+IL-21

source_name: CD8-T cells


title: Side population CD45+ cells of E17.5 lung-sample2


title: Side population CD45+ cells of E17.5 lung-sample 3, subset 1


title: IL-15+IL-21 4


title: Main population CD45+ cells of E17.5 lung-sample2


title: IL-15+IL-21 3


title: IL-15+IL-21 2


title: IL-15+IL-21 1


title: IL-21 4

description: naive CD8 T cells treated 4 hours with IL-21


title: IL-21 5


title: IL-15 5

description: naive CD8 T cells treated 4 hours with IL-15


title: IL-21 1


title: IL-21 2


title: IL-21 3


title: control 1

description: Control mice total RNA

source_name: CD8T cells


title: Hep3B_NCM_16h_S2

status: Public on Dec 10 2004

city: ROUEN

first: Jean

middle: Philippe

last: SALIER

address: Bvd Gambetta

department: Inserm Unit 519

country: France

institute: Faculty of Medicine and Pharmacy

description: A time-course (T0, 15, 30 min, 1, 3, 6 or 16 hours) of mRNA abundance changes was studied in the human Hep3B hepatoma cell line challenged with a pro-inflammatory cytokine-enriched CM vs control NCM. Paired cultures prepared from a same batch of trypsinized cells were challenged with CM vs NCM for a given length of time and this was repeated in three independent experiments (S1,S2,S3).

source_name: Hep3B cell line


title: control 2

description: Control mice total RNA


title: Hep3B_NCM_16h_S3


title: control 3

description: Control mice total RNA


title: IL-15 4


title: Hep3B_CM_16h_S1


title: Hep3B_NCM_6h_S3


title: IL-15 1


title: Hep3B_NCM_16h_S1


title: Hep3B_CM_16h_S3


title: Hep3B_CM_16h_S2


title: HCV_Control_2

description: dChip expression analysis (PM only) of HepG2 human liver cell line untransfected - replicate 2


title: IL-15 3


title: IL-15 2


title: control 5

description: Control mice

source_name: CD8T cells total RNA


title: control 4

description: Control mice total RNA


title: Hep3B_CM_6h_S2


title: Hep3B_CM_6h_S3


title: Hep3B_NCM_6h_S2


title: Hep3B_NCM_6h_S1


title: Hep3B_CM_6h_S1


title: Hep3B_NCM_3h_S3


title: Hep3B_CM_3h_S3


title: Hep3B_NCM_3h_S2


title: Hep3B_CM_3h_S2


title: Hep3B_NCM_3h_S1


title: 251271710008_S01_2_3_polarity1_red:FetalHeart_green:AdultHeart

source_name: Fetal Heart labeled with Cy5


title: Hep3B_NCM_1h_S1


title: Hep3B_CM_30min_S2


title: Hep3B_CM_30min_S1


title: Hep3B_CM_30min_S3


title: 251271710008_S01_2_4_polarity1_red:FetalHeart_green:AdultHeart


title: 251271710008_S01_2_1_polarity0_red:FetalHeart_green:FetalHeart

source_name: Fetal Heart labeled with Cy3


title: Hep3B_NCM_30min_S1


title: 251271710008_S01_2_2_polarity1_red:FetalHeart_green:AdultHeart


title: Hep3B_CM_15min_S2


title: Hep3B_CM_1h_S3


title: Hep3B_CM_15min_S3


title: Hep3B_NCM_30min_S2


title: Hep3B_NCM_15min_S3


title: Hep3B_NCM_1h_S3


title: Hep3B_NCM_30min_S3


title: Hep3B_CM_3h_S1


title: 251271710008_S01_1_3_polarity-1_red:AdultHeart_green:FetalHeart


title: Hep3B_CM_1h_S1


title: Hep3B_CM_1h_S2


title: Hep3B_NCM_15min_S2


title: Hep3B_NCM_1h_S2


title: Hep3B_NCM_T0_S3


title: 251271710008_S01_1_2_polarity-1_red:AdultHeart_green:FetalHeart


title: Hep3B_CM_T0_S3


title: Hep3B_CM_15min_S1


title: Hep3B_NCM_15min_S1


title: 251271710008_S01_1_1_polarity-1_red:AdultHeart_green:FetalHeart


title: 251271710007_S01_2_3_polarity1_red:FetalHeart_green:AdultHeart


title: 251271710007_S01_2_4_polarity-1_red:AdultHeart_green:FetalHeart


title: Hep3B_NCM_T0_S2


title: 251271710007_S01_2_2_polarity-1_red:AdultHeart_green:FetalHeart


title: 251271710007_S01_1_4_polarity0_red:FetalHeart_green:FetalHeart


title: 251271710007_S01_2_1_polarity1_red:FetalHeart_green:AdultHeart


title: Hep3B_NCM_T0_S1


title: 251271710007_S01_1_2_polarity1_red:FetalHeart_green:AdultHeart


title: 251271710007_S01_1_1_polarity0_red:AdultHeart_green:AdultHeart


title: 10.5 Months Heart MDX rep 3

city: Cleveland

first: Henry

middle: J.

last: Kaminski

state: OH

address: 11100 Euclid Avenue

department: Neurology

institute: Case Western Reserve University

description:
Standard Affymetrix Protocol
Keywords = microarray
Keywords = extraocular muscle

source_name: 10.5 months cardiac muscle


title: Trained diabetic 5 weeks DT5

city: Jyväskylä

first: Mika

last: Silvennoinen

address: Rautpohjankatu 8, Viveca

country: Finland

institute: LIKES - Research Center

description: Trained diabetic mice, time point 5 weeks

source_name: Calf muscle complex


title: 251271710008_S01_1_4_polarity0_red:AdultHeart_green:AdultHeart

source_name: Adult Heart labeled with Cy5

source_name: Adult Heart labeled with Cy3


title: 251271710007_S01_1_3_polarity-1_red:AdultHeart_green:FetalHeart


title: Trained 3 weeks T3

description: Trained mice, time point 3 weeks


title: 251271710006_S01_2_4_polarity0_red:FetalHeart_green:FetalHeart


title: Trained diabetic 3 weeks DT3

description: Trained diabetic mice, time point 3 weeks


title: 10.5 Months Heart MDX rep 1


title: Trained 5 weeks T5

description: Trained mice, time point 5 weeks


title: 10.5 Months Heart MDX rep 2


title: Trained 1 week T1

description: Trained mice, time point 1 week


title: Hep3B_CM_T0_S1


title: 10.5 Months Heart Control rep 3


title: 10.5 months Heart Control rep 1


title: Trained diabetic 1 week DT1

description: Trained diabetic mice, time point 1 week


title: Diabetic 5 weeks D5

description: Diabetic mice, time point 5 weeks


title: 8 Weeks Heart MDX rep 3

source_name: 8 weeks cardiac muscle


title: 251271710006_S01_2_3_polarity1_red:FetalHeart_green:AdultHeart

description:
Fetal Heart and Adult Heart commercial polyA RNA samples
Amplified and labeled according to standard Agilent protocols
Data processed with FeatureExtraction v7.5, only good features are reported (no saturated or outliers)
Keywords = Adult Heart, Fetal Heart, Agilent


title: Hep3B_CM_T0_S2


title: 10.5 Months Heart Control rep 2


title: 251271710006_S01_2_2_polarity1_red:FetalHeart_green:AdultHeart


title: 251271710006_S01_1_1_polarity1_red:FetalHeart_green:AdultHeart


title: 251271710006_S01_1_2_polarity1_red:FetalHeart_green:AdultHeart


title: 251271710006_S01_1_4_polarity0_red:AdultHeart_green:AdultHeart


title: 251271710006_S01_1_3_polarity1_red:FetalHeart_green:AdultHeart


title: 251271710006_S01_2_1_polarity-1_red:AdultHeart_green:FetalHeart


title: Healthy 3 weeks C3

description: Healthy control mice, time point 3 weeks


title: Diabetic 1 week D1

description: Diabetic mice, time point 1 week


title: Healthy 1 week C1

description: Healthy control mice, time point 1 week


title: Healthy 5 weeks C5

description: Healthy control mice, time point 5 weeks


title: Side population CD45- cells of E17.5 lung-sample1


title: nrd-3

status: Public on Dec 08 2004

first: CBDM

last: Lab

address: 77 Avenue Louis Pasteur

department: Microbiology and Immunobiology

institute: Harvard Medical School

description: OT-I CD8+ T cells transferred into unirradiated b6 host sorted at day 6

source_name: ln/spleen


title: MAF_S2F2

status: Public on Dec 09 2004

city: Raleigh

first: Ahmad

last: Fakhoury

state: NC

department: Plant Pathology

institute: North Carolina State University

description:
RNA was isolated from fungal lyophilized tissue using Trizol (Life Technologies, Rockville, MD) according to the manufacturers instructions. cDNA synthesis, labeling, and hybridization were performed using the 3DNA detection system from Genisphere (Hatfield, PA) as recommended by the manufacturer.
Keywords = Aspergillus
Keywords = aflatoxin
Keywords = 14-3-3

organism: Aspergillus flavus

source_name: Aspergillus flavus strain 6A

source_name: Aspergillus flavus strain 8610


title: nrd-2


title: hpd115-1

description: OT-I CD8+ T cells transferred into irradiated b6 host sorted at day 115


title: Diabetic 3 weeks D3

description: Diabetic mice, time point 3 weeks


title: hpd40-1

description: OT-I CD8+ T cells transferred into irradiated b6 host sorted at day 40


title: hpd40-2


title: hpd40-3


title: hpd40-4


title: hpd5-4

description: OT-I CD8+ T cells transferred into irradiated b6 host sorted at day 6


title: nrd-4


title: 8 Weeks Heart MDX rep 2


title: hpd5-3


title: hpd115-2


title: 8 Week Heart Control rep 1

source_name: 8 Week cardiac muscle


title: Heart dKO rep 3

description:
Standard Affymetrix Protocol
Keywords = extraocular muscle
Keywords = Affymetrix

source_name: 8 week heart muscle


title: Extraocular dKO rep 3

source_name: 8 week extraocular muscle


title: hpd5-2

description: cells transferred into irradiated b6 host sorted at day 6


title: Heart MDX (control) rep 3


title: Leg dKO rep 3

source_name: 8 week leg muscle


title: hpd115-3


title: nrd-1


title: hpd5-5


title: MAF_S1F2


title: hpd5-8


title: Extraocular MDX (control) rep 3


title: 8 Weeks  Heart MDX rep 1


title: hpd5-6


title: Leg MDX (control) rep 3


title: MAF_S2F1


title: hpd5-7


title: Leg dKO rep 2


title: Extraocular dKO rep 2


title: Heart dKO rep 2


title: MAF_S1F1


title: hp day 5-1


title: Heart MDX (control) rep 2


title: Leg MDX (control) rep 2


title: 8 Weeks Heart Control rep 3


title: Heart dKO rep 1


title: GEIM 38 on u133A

city: Cambridge

first: Sek Won

last: Kong

address: 7 Divinity Avenue

institute: Harvard University

description: The dataset consists of a set of 14 human muscle biopsy samples from patients with inflammatory myopathies that were hybridized on both HG-U95Av2 and HG-U133A human arrays.

source_name: Human, muscle, inclusion body myositis


title: Expression profile of wild type strain (2)

city: Bunkyo-ku

first: Katsuhiko

last: Shirahige

state: Tokyo

institute: The University of Tokyo

description:
Type of experiment: Gene expression profiling analysis of S.cerevisiae W303-1a.
Experimental factor: genetic variation (WT, gpr1 and gpa2 mutant strains).
Number of hybridizations: 6. Single-colour labeling was performed for each sample.
Sample preparation:
Total RNA was prepared using FastRNA Pro Red Kit  (BIO 101 Systems) according to the manufacturers' instructions.

source_name: W303-1a (wild type strain)


title: Leg MDX (control) rep 1


title: Extraocular MDX (control) rep 2


title: Leg dKO rep 1


title: 8 Weeks Heart Control rep 2


title: Extraocular dKO rep 1


title: Expression profile of gpr1 deletion mutant (1)

source_name: gpr1 deletion mutant


title: Expression profile of gpr1 deletion mutant (2)


title: Heart MDX (control) rep 1


title: GEIM 21 on u133A

source_name: Human, muscle, inflammatory myopathy


title: GEIM 39 on u133A

source_name: Human, muscle, dermatomyositis


title: Expression profile of gpa2 deletion mutant (1)

source_name: gpa2 deletion mutant


title: GEIM 12 on u133A


title: Expression profile of gpa2 deletion mutant (2)

source_name: gpa2 deletion mutant (2nd experiment)


title: Extraocular MDX (control) rep 1


title: GEIM 27 on u133A


title: GEIM 16 on u133A

source_name: Human, muscle, polymyositis


title: GEIM 7 on u133A


title: GEIM 30 on u133A


title: Expression profile of wild type strain (1)

description:
Type of experiment: Gene expression profiling analysis of S.cerevisiae W303-1a.
Experimental factor: genetic variation (WT, gpr1 and gpa2 mutant strains).
Number of hybridizations: 6. Single-colour labeling was performed for each sample.
Sample preparation:
Total RNA was prepared using FastRNA Pro Red Kit  (BIO 101 Systems) according to the manufacturers' instructions.
.

source_name: W303-1a (wild type)


title: GEIM 17 on u133A


title: GEIM 36 on u133A


title: GEIM 19 on u133A


title: Hearts_Polarity-1_Array2(dye_flip)

status: Public on Dec 07 2004

description:
Fetal Heart and Adult Heart commercial polyA RNA samples
Amplified and labeled according to standard Agilent protocols, slides printed on 2%UDS with LoGlo process
Data processed with FeatureExtraction v7.1, only good features are reported (no saturated or outliers)
Keywords = Adult Heart, Fetal Heart

source_name: Adult Heart labeled with Cy5

source_name: Fetal Heart labeled with Cy3


title: GEIM 3 on u133A


title: Fibroblasts 24 hours after UV

status: Public on Dec 03 2004

city: Little Rock

first: Marjan

last: Boerma

state: AR

address: 4301 West Markham, Slot 725

institute: University of Arkansas for Medical Sciences

description:
A culture of neonatal rat cardiac fibroblasts was irradiated with 10 J/m[squared] UVC (at room temperature). RNA was isolated 24 hours after irradiation.
Lot batch =

source_name: Cardiac fibroblasts in culture


title: Fibroblasts 24 hours after sham-UV

description:
A culture of neonatal rat cardiac fibroblasts was sham-irradiated (at room temperature), to serve as a control for cultured fibroblasts irradiated with UV.
Lot batch =


title: Fibroblasts 24 hours after sham-UV (2)


title: Fibroblasts 24 hours after UV (3)


title: Hearts_Polarity-1_Array1(dye_flip)


title: Hearts_Polarity1_Array3

source_name: Fetal Heart labeled with Cy5

source_name: Adult Heart labeled with Cy3


title: Fibroblasts 24 hours after sham-UV (3)


title: Hearts_Polarity-1_Array4(dye_flip)


title: Hearts_Polarity1_Array4


title: GEIM 9 on u133A


title: Cardiac cells 24 hours after UV

description:
Neonatal rat cardiomyocyte-enriched cell cultures were irradiated with 10 J/m[squared] UVC (at room temperature). RNA was isolated 24 hours after irradiation.
Lot batch =

source_name: Cardiac cells in culture


title: Fibroblasts 24 hours after UV (2)


title: Hearts_Polarity-1_Array3(dye_flip)


title: Fibroblasts 24 hours after 8.5 Gy (3)

description:
A culture of neonatal rat cardiac fibroblasts was treated with ionising radiation at a single dose of 8.5 Gy (at room temperature). RNA was isolated 24 hours after irradiation.
Lot batch =


title: Cardiac cells 24 hours after sham-UV

description:
Neonatal rat cardiomyocyte-enriched cell cultures were sham-irradiated (at room temperature), to serve as a control for neonatal rat cardiomyocyte-enriched cultures irradiated with UV.
Lot batch =


title: Cardiac cells after 24 hours of cyclic stretch (2)

description:
Neonatal rat cardiomyocyte-enriched cells, cultured on Flexcell culture plates coated with collagen I, were subjected to cyclic stretch for 24 hours.
Lot batch =


title: Hearts_Polarity1_Array1


title: Cardiac cells after 24 hours of cyclic stretch (3)


title: Cardiac cells 24 hours after UV (2)


title: Cardiac cells after 24 hours of cyclic stretch


title: Cardiac cells 24 hours after sham-UV (2)


title: Cardiac cells cultured at Flexcell culture plates coated with collagen I (3)

description:
Neonatal rat cardiomyocyte-enriched cells were cultured on Flexcell culture plates coated with collagen I, to serve as a control for neonatal rat cardiomyocyte-enriched cultures subjected to cyclic stretch.
Lot batch =


title: Cardiac cells cultured at Flexcell culture plates coated with collagen I


title: Cardiac cells cultured at Flexcell culture plates coated with collagen I (2)


title: Cardiac cells 24 hours after UV (3)


title: Cardiac cells 24 hours after 8.5 Gy

description:
Neonatal rat cardiomyocyte-enriched cell cultures were treated with ionising radiation at a single dose of 8.5 Gy. RNA was isolated at 24 hours after irradiation
Lot batch =


title: Fibroblasts cultured at Flexcell culture plates, coated with collagen I (3)

description:
Neonatal rat heart fibroblasts were cultured on Flexcell culture plates, coated with collagen I, to serve as a control for cultures of fibroblasts subjected to cyclic stretch.
Lot batch =


title: Fibroblasts cultured at Flexcell culture plates, coated with collagen I (2)


title: Fibroblasts after 24 hours of cyclic stretch

description:
Neonatal rat heart fibroblasts were cultured on Flexcell culture plates, coated with collagen I, and subjected to cyclic stretch for 24 hours.
Lot batch =


title: Hearts_Polarity1_Array2


title: Cardiac cells 24 hours after 8.5 Gy (2)


title: Fibroblasts after 24 hours of cyclic stretch (2)


title: Fibroblasts after 24 hours of cyclic stretch (3)


title: Fibroblasts cultured at Flexcell culture plates, coated with collagen I


title: Fibroblasts 24 hours after 8.5 Gy (2)

description:
A culture of neonatal rat heart fibroblasts was treated with ionising radiation at a single dose of 8.5 Gy (at room temperature). RNA was isolated 24 hours after irradiation.
Lot batch =


title: Cardiac cells 24 hours after 8.5 Gy (3)


title: Fibroblasts ionising radiation 0 Gy

description:
A culture of neonatal rat heart fibroblasts was sham-irradiated (at room temperature), to serve as a control for fibroblasts after ionising radiation.
Lot batch =

source_name: cardiac fibroblasts in culture


title: GEIM 20 on u133A


title: Cardiac cells 24 hours after sham-irradiation

description:
A culture, enriched for neonatal rat heart myocytes, was sham-irradiated (at room temperature), to serve as a control for cardiomyocyte-enriched cultures after ionising radiation.
Lot batch =


title: Fibroblasts 24 hours after sham-irradiation (2)

description:
A culture of neonatal rat heart fibroblasts was sham-irradiated (at room temperature), to serve as a control for cultures of fibroblasts after ionising radiation.
Lot batch =


title: Cardiac cells 24 hours after sham-irradiation (2)


title: Fibroblasts 24 hours after 8.5 Gy

description:
A culture of neonatal rat heart fibroblasts was treated with ionising radiation at a single dose of 8.5 Gy (at room temperature). RNA was isolated at 24 hours after irradiation.
Lot batch =


title: Cardiac cells 24 hours after sham-irradiation (3)


title: Patient 33, Visit 1, Time of treatment 0 weeks, File nt053003

status: Public on Dec 01 2004

city: Collegeville

last: Burczynski

state: PA

address: 500 Arcola Road

department: Pharmacogenomic Biomarkers

institute: Wyeth

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 33
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A

source_name: Peripheral Blood Mononuclear Cells (PBMC)


title: Patient 30, Visit 1, Time of treatment 0 weeks, File nt053014

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 30
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Patient 42, Visit 1, Time of treatment 0 weeks, File nt051005

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 42
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Patient 31, Visit 1, Time of treatment 0 weeks, File nt053011

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 31
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Patient 41, Visit 1, Time of treatment 0 weeks, File nt050913

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 41
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Patient 40, Visit 1, Time of treatment 0 weeks, File nt050903

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 40
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Patient 27, Visit 1, Time of treatment 0 weeks, File nt050901

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 27
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Patient 25, Visit 1, Time of treatment 0 weeks, File nt053002

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 25
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Patient 38, Visit 1, Time of treatment 0 weeks, File nt053001

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 38
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Patient 18, Visit 1, Time of treatment 0 weeks, File nt050914

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 18
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Patient 26, Visit 1, Time of treatment 0 weeks, File nt051007

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 26
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Patient 24, Visit 1, Time of treatment 0 weeks, File nt053013

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 24
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Patient 44, Visit 1, Time of treatment 0 weeks, File nt053010

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 44
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Patient 20, Visit 1, Time of treatment 0 weeks, File nt050909

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 20
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Mouse gld SCID 324

city: Rockville

first: Jeff

middle: X.

last: Zhou

address: 5640 Fishers Lane

department: NIAID

institute: NIH

description:
mAdb experiment ID: 34396
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 324

source_name: mouse hematopoetic tumor cell line common reference 2


title: Patient 46, Visit 1, Time of treatment 0 weeks, File nt518

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 46
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Patient 21, Visit 1, Time of treatment 0 weeks, File nt050907

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 21
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Patient 10, Visit 1, Time of treatment 0 weeks, File nt051008

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 10
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Mouse gld SCID 424

description:
mAdb experiment ID: 34397
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 424


title: Patient 15, Visit 1, Time of treatment 0 weeks, File nt050910

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 15
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Patient 2, Visit 1, Time of treatment 0 weeks, File nt053012

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 2
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Mouse gld SCID 3294

description:
mAdb experiment ID: 34393
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 3294


title: Patient 13, Visit 1, Time of treatment 0 weeks, File nt610

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 13
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Patient 16, Visit 1, Time of treatment 0 weeks, File nt050902

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 16
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Patient 4, Visit 1, Time of treatment 0 weeks, File nt051002

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 4
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Mouse gld SCID 142

description:
mAdb experiment ID: 34394
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 142


title: Patient 7, Visit 1, Time of treatment 0 weeks, File nt051003

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 7
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Mouse gld SCID 221_2

description:
mAdb experiment ID: 34398
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 221_2


title: Mouse gld SCID 311 SPL

description:
mAdb experiment ID: 34390
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 311 SPL


title: Mouse gld SCID 223

description:
mAdb experiment ID: 34395
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 223


title: Patient 22, Visit 1, Time of treatment 0 weeks, File nt050906

description:
PBMCs from Renal Cell Carcinoma subjects. Samples collected over time as subject was treated with CCI-779
Donor number : 22
Donor disease : Renal Cell Carcinoma
Visit number : 1
Treatment : CCI-779
Time of treatment : 0 weeks
CCI Cummulative AUC : N/A
Cummulative AUC sum : N/A


title: Mouse Balb.nu B cells + LPS [#2-3]

description:
mAdb experiment ID: 35628
Mouse nude Balb LPS activated B cells
Array Print: Mmaa-13

source_name: Balb.nu B cells + LPS [#2-3]


title: Mouse gld SCID 435 #1

description:
mAdb experiment ID: 34387
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 435 #1


title: Mouse Balb.nu B cells + LPS [#1-2]

description:
mAdb experiment ID: 35624
Mouse nude Balb LPS activated B cells
Array Print: Mmaa-13

source_name: Balb.nu B cells + LPS [#1-2]


title: Mouse Balb.nu B cells + LPS [#3-2]

description:
mAdb experiment ID: 35630
Mouse nude Balb LPS activated B cells
Array Print: Mmaa-13

source_name: Balb.nu B cells + LPS [#3-2]


title: Mouse gld SCID 421

description:
mAdb experiment ID: 34386
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 421


title: Mouse Balb.nu B cells + LPS [#1-3]

description:
mAdb experiment ID: 35625
Mouse nude Balb LPS activated B cells
Array Print: Mmaa-13

source_name: Balb.nu B cells + LPS [#1-3]


title: Mouse Balb.nu B cells + LPS [#3-1]

description:
mAdb experiment ID: 35629
Mouse nude Balb LPS activated B cells
Array Print: Mmaa-13

source_name: Balb.nu B cells + LPS [#3-1]


title: Mouse Balb.nu B cells + LPS [#2-2]

description:
mAdb experiment ID: 35627
Mouse nude Balb LPS activated B cells
Array Print: Mmaa-13

source_name: Balb.nu B cells + LPS [#2-2]


title: Mouse Balb.nu B cells + LPS [#2-1]

description:
mAdb experiment ID: 35626
Mouse nude Balb LPS activated B cells
Array Print: Mmaa-13

source_name: Balb.nu B cells + LPS [#2-1]


title: Mouse SJL 36976

description:
mAdb experiment ID: 34456
Mouse SJL-B2M B cell lymphoma Spleen tissue
Array Print: Mmaa-11


title: Mouse SJL 36974

description:
mAdb experiment ID: 34459
Mouse SJL-B2M B cell lymphoma Spleen tissue
Array Print: Mmaa-11


title: Mouse gld SCID 426

description:
mAdb experiment ID: 34383
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 426


title: Mouse Balb.nu B cells + LPS [#1-1]

description:
mAdb experiment ID: 35623
Mouse nude Balb LPS activated B cells
Array Print: Mmaa-13

source_name: Balb.nu B cells + LPS [#1-1]

source_name: mouse hematopoetic tumor cell line common reference 2


title: Mouse gld SCID 221_1

description:
mAdb experiment ID: 34385
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 221_1


title: Mouse gld SCID 600

description:
mAdb experiment ID: 34382
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 600


title: Mouse gld SCID 531

description:
mAdb experiment ID: 34384
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 531


title: Mouse gld SCID 2685

description:
mAdb experiment ID: 34381
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 2685


title: Mouse gld SCID 362

description:
mAdb experiment ID: 34389
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 362


title: Mouse SJL 36669

description:
mAdb experiment ID: 34453
Mouse SJL-B2M B cell lymphoma Spleen tissue
Array Print: Mmaa-11


title: Mouse gld SCID 205 #1

description:
mAdb experiment ID: 34378
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 205 #1


title: Mouse gld SCID 205 #2

description:
mAdb experiment ID: 34379
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 205 #2


title: Mouse gld SCID 217 LN

description:
mAdb experiment ID: 34377
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 217 LN


title: Mouse gld SCID 355 MLN

description:
mAdb experiment ID: 34388
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 355 MLN


title: Mouse SJL 36693

description:
mAdb experiment ID: 34457
Mouse SJL-B2M B cell lymphoma Spleen tissue
Array Print: Mmaa-11


title: Mouse SJL 37047

description:
mAdb experiment ID: 34449
Mouse SJL-B2M B cell lymphoma Spleen tissue
Array Print: Mmaa-11


title: Mouse SJL 36975

description:
mAdb experiment ID: 34454
Mouse SJL-B2M B cell lymphoma Spleen tissue
Array Print: Mmaa-11


title: Mouse SJL 36668

description:
mAdb experiment ID: 34450
Mouse SJL-B2M B cell lymphoma Spleen tissue
Array Print: Mmaa-11


title: Mouse MZL 35841

description:
mAdb experiment ID: 34547
Mouse Marginal Zone(+)  B cell lymphoma Spleen tissue
Array Print: Mmaa-10


title: Mouse SJL 36697

description:
mAdb experiment ID: 34455
Mouse SJL-B2M B cell lymphoma Spleen tissue
Array Print: Mmaa-11


title: Mouse gld SCID 311 LN

description:
mAdb experiment ID: 34392
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 311 LN


title: Mouse MZL 35630

description:
mAdb experiment ID: 34553
Mouse Marginal Zone(+)  B cell lymphoma Spleen tissue
Array Print: Mmaa-10


title: Mouse Balb.nu B cells + LPS [#3-3]

description:
mAdb experiment ID: 35631
Mouse nude Balb LPS activated B cells
Array Print: Mmaa-13

source_name: Balb.nu B cells + LPS [#3-3]


title: Mouse MZL 34932

description:
mAdb experiment ID: 34554
Mouse Marginal Zone B cell lymphoma Spleen tissue
Array Print: Mmaa-10


title: Mouse SJL 36671

description:
mAdb experiment ID: 34451
Mouse SJL-B2M B cell lymphoma Spleen tissue
Array Print: Mmaa-11


title: Mouse FBL 35208

description:
mAdb experiment ID: 34544
Mouse Follicular B cell lymphoma Spleen tissue
Array Print: Mmaa-10


title: Mouse FBL 34990

description:
mAdb experiment ID: 34543
Mouse Follicular B cell lymphoma Spleen tissue
Array Print: Mmaa-10


title: Mouse FBL 35610

description:
mAdb experiment ID: 34540
Mouse Follicular B cell lymphoma Spleen tissue
Array Print: Mmaa-10


title: Mouse MZL 35046

description:
mAdb experiment ID: 34550
Mouse Marginal Zone  B cell lymphoma Spleen tissue
Array Print: Mmaa-10


title: Mouse PCT Sipc 3308

description:
mAdb experiment ID: 34466
Mouse plasmacytoma cell line
Array Print: Mmaa-10

source_name: PCT Sipc 3308


title: Mouse PCT J 558

description:
mAdb experiment ID: 34469
Mouse plasmacytoma cell line
Array Print: Mmaa-10

source_name: PCT J 558


title: Mouse PCT CS

description:
mAdb experiment ID: 34465
Mouse plasmacytoma cell line
Array Print: Mmaa-10

source_name: PCT CS


title: Mouse FBL 35344

description:
mAdb experiment ID: 34538
Mouse Follicular B cell lymphoma Spleen tissue
Array Print: Mmaa-10


title: Mouse MZL 35844

description:
mAdb experiment ID: 34548
Mouse Marginal Zone  B cell lymphoma Spleen tissue
Array Print: Mmaa-10


title: Mouse PCT 23-72

description:
mAdb experiment ID: 34462
Mouse plasmacytoma cell line
Array Print: Mmaa-10


title: Mouse MZL 34909

description:
mAdb experiment ID: 34551
Mouse Marginal Zone  B cell lymphoma Spleen tissue
Array Print: Mmaa-10


title: Mouse FBL 36549

description:
mAdb experiment ID: 34535
Mouse Follicular B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse FBL 35618

description:
mAdb experiment ID: 34541
Mouse Follicular B cell lymphoma Spleen tissue
Array Print: Mmaa-10


title: Mouse SJL 34458

description:
mAdb experiment ID: 34458
Mouse SJL B cell lymphoma Spleen tissue
Array Print: Mmaa-11


title: Mouse MZL 34955

description:
mAdb experiment ID: 34555
Mouse Marginal Zone B cell lymphoma Spleen tissue
Array Print: Mmaa-10


title: Mouse FBL 36650

description:
mAdb experiment ID: 34536
Mouse Follicular B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse PCT T 1756

description:
mAdb experiment ID: 34460
Mouse plasmacytoma cell line
Array Print: Mmaa-10

source_name: PCT T 1756


title: Mouse FBL 35711

description:
mAdb experiment ID: 34532
Mouse Follicular B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse FBL 30253

description:
mAdb experiment ID: 34531
Mouse Follicular B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse FBL 35278

description:
mAdb experiment ID: 34545
Mouse Follocular B cell lymphoma Spleen tissue
Array Print: Mmaa-10


title: Mouse MZL 35587

description:
mAdb experiment ID: 34552
Mouse Marginal Zone  B cell lymphoma Spleen tissue
Array Print: Mmaa-10


title: Mouse gld SCID 861

description:
mAdb experiment ID: 34380
FasL mutant mouse B cell lymphoma
Array Print: Mmad-03

source_name: gld SCID 861


title: Mouse PCT TEPC-3609

description:
mAdb experiment ID: 34463
Mouse plasmacytoma cell line
Array Print: Mmaa-10

source_name: PCT TEPC-3609

source_name: mouse hematopoetic tumor cell line common reference 2


title: Mouse FBL 35871

description:
mAdb experiment ID: 34533
Mouse Follicular B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse MZL 35588

description:
mAdb experiment ID: 34559
Mouse Marginal Zone  B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse FBL 30677

description:
mAdb experiment ID: 34542
Mouse Follicular B cell lymphoma Spleen tissue
Array Print: Mmaa-10


title: Mouse PCT ABPC-48

description:
mAdb experiment ID: 34467
Mouse plasmacytoma cell line
Array Print: Mmaa-10

source_name: PCT ABPC-48


title: Mouse SJL 36670

description:
mAdb experiment ID: 34452
Mouse SJL-B2M B cell lymphoma Spleen tissue
Array Print: Mmaa-11


title: Mouse MZL 34946

description:
mAdb experiment ID: 34549
Mouse Marginal Zone  B cell lymphoma Spleen tissue
Array Print: Mmaa-10


title: Mouse PCT ABPC-20

description:
mAdb experiment ID: 34464
Mouse plasmacytoma cell line
Array Print: Mmaa-10

source_name: PCT ABPC-20


title: Mouse PCT MPC 11

description:
mAdb experiment ID: 34468
Mouse plasmacytoma cell line
Array Print: Mmaa-10

source_name: PCT MPC 11


title: Mouse IBL 37159

description:
mAdb experiment ID: 34524
Mouse Immunoblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse MZL 29996

description:
mAdb experiment ID: 34546
Mouse Marginal Zone  B cell lymphoma Spleen tissue
Array Print: Mmaa-10


title: Mouse FBL 35535

description:
mAdb experiment ID: 34539
Mouse Follicular B cell lymphoma Spleen tissue
Array Print: Mmaa-10


title: Mouse IBL 35611

description:
mAdb experiment ID: 34525
Mouse Immunoblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse PCT AP

description:
mAdb experiment ID: 34461
Mouse plasmacytoma cell line
Array Print: Mmaa-10

source_name: PCT AP


title: Mouse IBL 37150

description:
mAdb experiment ID: 34523
Mouse Immunoblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse IBL 37132

description:
mAdb experiment ID: 34556
Mouse Immunoblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse CBL 35087

description:
mAdb experiment ID: 34514
Mouse Centroblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse IBL 36482

description:
mAdb experiment ID: 34522
Mouse Immunoblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse CBL 36165

description:
mAdb experiment ID: 34517
Mouse Centroblastic-HA B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: CEA_SGF:ALU029

city: Evry

first: Thierry

last: Kortulewski

address: 2 rue Gaston Cremieux

institute: CEA/DRR/SGF/LGRH

description: RNA sample from lymphocytes B (sca1- IL7- B220+) was labeled in Cy3 and hybridized against RNA sample from total bone marrow cells labeled in Cy5.

source_name: total bone marrow cells isolated from 50 wild type C57/Bl6 mice.

source_name: lymphocytes B (sca1- IL7R- B220+ phenotype) sorted from 15 wild type C57/Bl6 mice by cytometry.


title: Mouse IBL 31473

description:
mAdb experiment ID: 34519
Mouse Immunoblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse CBL 35706

description:
mAdb experiment ID: 34557
Mouse Centroblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse CBL 35277

description:
mAdb experiment ID: 34516
Mouse Centroblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse CBL 31623

description:
mAdb experiment ID: 34511
Mouse Centroblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse CBL 30539

description:
mAdb experiment ID: 34508
Mouse Centroblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse IBL 35624

description:
mAdb experiment ID: 34520
Mouse Immunoblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse IBL 35663

description:
mAdb experiment ID: 34521
Mouse Immunoblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: CEA_SGF:ALU023

description: RNA sample from proB lymphocytes(sca1lo IL7lo B220+) was labeled in Cy5 and hybridized against RNA sample from total bone marrow cells labeled in Cy3.

source_name: Pro-lymphocyte B (sca1lo IL7R+/lo B220+ phenotype) sorted from 15 wild type C57/Bl6 mice by cytometry.


title: CEA_SGF:ALU024

description: RNA sample from proB lymphocytes(sca1lo IL7lo B220+) was labeled in Cy3 and hybridized against RNA sample from total bone marrow cells labeled in Cy5.


title: CEA_SGF:ALU026

description: RNA sample from lymphocytes B (sca1- IL7- B220+) was labeled in Cy5 and hybridized against RNA sample from total bone marrow cells labeled in Cy3.


title: Mouse CBL 30750

description:
mAdb experiment ID: 34509
Mouse Centroblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Mouse CBL 35121

description:
mAdb experiment ID: 34515
Mouse Centroblastic-HA B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: CEA_SGF:ALU022


title: CEA_SGF:ALU020

description: RNA sample from common lymphoid progenitor cells(lin- sca1lo IL7lo c-kit-) was labeled in Cy3 and hybridized against RNA sample from total bone marrow cells labeled in Cy5.

source_name: common lymphoid progenitors (lin- sca1lo c-kitlo IL7R+ phenotype) sorted from 50 wild type C57/Bl6 mice by cytometry.


title: Mouse CBL 33133

description:
mAdb experiment ID: 34513
Mouse Centroblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: CEA_SGF:ALU021


title: Mouse CBL 31726

description:
mAdb experiment ID: 34512
Mouse Centroblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: CEA_SGF:ALU018

description: RNA sample from common lymphoid progenitor cells(lin- sca1lo IL7lo c-kit-) was labeled in Cy5 and hybridized against RNA sample from total bone marrow cells labeled in Cy3.


title: CEA_SGF:ALU025


title: Mouse CBL 30537

description:
mAdb experiment ID: 34507
Mouse Centroblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: CEA_SGF:ALU027


title: Mouse CBL 31208

description:
mAdb experiment ID: 34510
Mouse Centroblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: CEA_SGF:ALU008

description: RNA sample from transgenic megakaryocytes (c-kit- CD41+)was labeled in Cy3 and hybridized against RNA sample from total bone marrow cells labeled in Cy5.

source_name: megakaryocytes (c-kit- CD41+ phenotype) sorted by cytometry from 8 MIIb-tk transgenic mice 3 days after ganciclovir withdrawal.


title: CEA_SGF:ALU019


title: CEA_SGF:ALU028

description: RNA sample from lymphocytes B (sca1- IL7- B220+) was labeled in Cy3 and hybridized against RNA sample from total bone marrow cells labeled in Cy5.


title: Mouse CBL 30287

description:
mAdb experiment ID: 34505
Mouse Centroblastic B cell lymphoma Spleen  tissue
Array Print: Mmaa-10


title: Rasagiline_4

city: Haifa

first: Yotam

last: Sagi

address: 2 Efron st.

department: Department of Pharmacology , Faculty of Medicine

country: Israel

institute: Technion - Israel institute of Technology

description: 5 mice (22-24gr) received Rasagiline mesylate (0.1mg/kg in 0.1ml water)for 14 days orally, killed by cervical translocation. Midbrains were punched under dissecting microscope, pooled and total RNA was produced and purified.

source_name: C57/Bl Mouse Midbrain


title: WT Ovule 1 (AtGenome1)

city: Los Angeles

first: Bob

last: Goldberg

address: 610 Charles E Young Drive East

department: Molecular, Cell and Developmental Biology

institute: University of California, Los Angeles

description: Microarray Methods: Total RNA was extracted using the Hot Borate Method (ref.).  Fifteen micrograms of biotinylated complementary RNA (cRNA) was prepared as described (Le et. al., 2004, PNAS).  cRNA was subsequently hybridized to Affymetrix ATH1 Arabidopsis GeneChips.  The scanned array images were analyzed using Affymetrix Microarray Suite 4.0 (MAS 4.0) with a global scaling intensity set at 2500.

organism: Arabidopsis thaliana

source_name: Genotype: Ws-0, Wild Type; Stage: Unfertilized Ovule; Technical Replica: 1 of 2


title: CEA_SGF:ALB052

description: RNA sample from transgenic hematopoietic subpopulation (lin- sca1+ c-kit-) was labeled in Cy3 and hybridized against RNA sample from total bone marrow cells labeled in Cy5.

source_name: hematopoietic cells (lin- sca1+ phenotype) sorted by cytometry from 8 MIIb-tk transgenic mice 1 day after ganciclovir withdrawal.


title: CEA_SGF:ALU007

description: RNA sample from transgenic megakaryocytes (c-kit- CD41+) was labeled in Cy5 and hybridized against RNA sample from total bone marrow cells labeled in Cy3.