title: Dahl salt-sensitive (S) rat_sample 2 of 3

description:
BP QTL study: Comparison of renal gene expression between the Dahl Salt-sensitive (S) rat and S.R(9)x3A congenic rat
Keywords = Blood Pressure
Keywords = Quantitative trait locus
Keywords = QTL
Keywords = hypertension
Keywords = rat
Keywords = congenic
Lot batch = (Tag:S7455)


title: S.R(9)x3A congenic strain-sample 3 of 3

status: Public on Sep 20 2004

type: RNA

city: Toledo

first: Bina

last: Joe

state: OH

address: 3035 Arlington Ave.

department: Physiology and Cardiovascular Genomics

country: USA

institute: Medical College of Ohio

description:
BP QTL study: Comparison of renal gene expression between the Dahl Salt-sensitive (S) rat vs. S.R(9) congenic
Keywords = Blood Pressure
Keywords = Quantitative trait locus
Keywords = QTL
Keywords = hypertension
Keywords = rat
Keywords = congenic
Lot batch = (Tag: 23340)

molecule: total RNA

organism: Rattus norvegicus

source_name: Kidney


title: S.R(9)x3A congenic strain_sample 3 of 3

description:
BP QTL study: Comparison of renal gene expression between the Dahl Salt-sensitive (S) rat and S.R(9)x3A congenic rat
Keywords = Blood Pressure
Keywords = Quantitative trait locus
Keywords = QTL
Keywords = hypertension
Keywords = rat
Keywords = congenic
Lot batch = (Tag:23340)


title: STV_G

city: Boston

first: Susan

last: Kandarian

state: MA

department: Department of Health Sciences

institute: Boston University

description:
STARVED MYOTUBES - C2C12 mouse myoblasts (American Type Culture Collection, Manassas, VA) were maintained in growth medium (DMEM supplemented with 10% Fetal Bovine serum, Invitrogen Corporation, Carlsbad, CA) in 5% CO2.  Cells were plated at a density of 40-50% in 100mm dishes.  When cells reached ~90% confluency 24 hours later, they were switched to differentiation media (DMEM containing 2% horse serum; GIBCO, Invitrogen Corporation, Carlsbad, CA) which was subsequently changed every 48 hours. All cells were allowed to differentiate for 4 days with feeding every two days (day 0, 2, and 4).  Beginning at day 4, control cells were re-fed every 48 hours whereas experimental cells were not re-fed.  After an additional 4 days (8 days post differentiation), cells were harvested and total RNA was isolated from control and "starved" (non re-fed cells)
Keywords = skeletal muscle
Keywords = atrophy

organism: Mus musculus

source_name: C2C12 MYOTUBES STARVED 4 DAYS


title: S.R(9)x3A  congenic strain-sample 2 of 3

description:
BP QTL study: Comparison of renal gene expression between the Dahl Salt-sensitive (S) rat and S.R(9)x3A congenic rat
Keywords = Blood Pressure
Keywords = Quantitative trait locus
Keywords = QTL
Keywords = hypertension
Keywords = rat
Keywords = congenic
Lot batch = (Tag:23339)


title: Dahl salt sensitive(S) rat-sample 3 of 3

description:
BP QTL study: Comparison of renal gene expression between the Dahl Salt-sensitive (S) rat and S.R(9)x3A congenic rat
Keywords = Blood Pressure
Keywords = Quantitative trait locus
Keywords = QTL
Keywords = hypertension
Keywords = rat
Keywords = congenic
Lot batch = (Tag:S7456)


title: STV_E


title: S.R(9)x3A congenic strain-sample 2 of 3

description:
BP QTL study: Comparison of renal gene expression between the Dahl Salt-sensitive (S) rat vs. S.R(9) congenic
Keywords = Blood Pressure
Keywords = Quantitative trait locus
Keywords = QTL
Keywords = hypertension
Keywords = rat
Keywords = congenic
Lot batch = (Tag: 23339)


title: STV_H


title: CON_D

description:
CONTROL MYOTUBES - C2C12 mouse myoblasts (American Type Culture Collection, Manassas, VA) were maintained in growth medium (DMEM supplemented with 10% Fetal Bovine serum, Invitrogen Corporation, Carlsbad, CA) in 5% CO2.  Cells were plated at a density of 40-50% in 100mm dishes.  When cells reached ~90% confluency 24 hours later, they were switched to differentiation media (DMEM containing 2% horse serum; GIBCO, Invitrogen Corporation, Carlsbad, CA) which was subsequently changed every 48 hours. All cells were allowed to differentiate for 4 days with feeding every two days (day 0, 2, and 4).  Beginning at day 4, control cells were re-fed every 48 hours whereas experimental cells were not re-fed.  After an additional 4 days (8 days post differentiation), cells were harvested and total RNA was isolated from control and "starved" (non re-fed cells)
Keywords = skeletal muscle
Keywords = atrophy

source_name: C2C12 MYOTUBES


title: S.R (9)x3A congenic strain-sample 2 of 3


title: Dahl salt sensitive (S) rat-sample 1 of 3

description:
BP QTL study: Comparison of renal gene expression between the Dahl Salt-sensitive (S) rat and S.R(9)x3A congenic rat
Keywords = Blood Pressure
Keywords = Quantitative trait locus
Keywords = QTL
Keywords = hypertension
Keywords = rat
Keywords = congenic
Lot batch = (Tag:S7454)


title: CON_B

source_name: C2C12 MYTOUBES


title: Dahl salt-sensitive(S) rat-sample 2 of 3


title: S.R(9)x3A congenic strain-sample 1 of 3

description:
BP QTL study: Comparison of renal gene expression between the Dahl Salt-sensitive (S) rat and S.R(9)x3A congenic rat

Keywords = Blood Pressure
Keywords = Quantitative trait locus
Keywords = QTL
Keywords = hypertension
Keywords = rat
Keywords = congenic
Lot batch = (Tag:23338)


title: Fos-/- splenocytes expressing deltaNFAT

status: Public on Sep 19 2004

city: Tokyo

first: Koichi

last: Matsuo

address: 35 Shinanomachi, Shinjuku-ku

department: Department of Microbiology and Immunology

country: Japan

institute: School of Medicine, Keio University

description: Fos-/- splenocytes were infected with deltaNFAT-virus and were co-cultured with stromal ST2-T cells for 6 days in the presence of dexamethasone and 1,25-dihydroxyvitaminD3. Cells were harvested in toto.

source_name: Fos-/- splenocytes infected with deltaNFAT-virus under an osteoclastogenic condition


title: CON_C


title: S.R (9)x3A congenic strain-sample 1 of 3

source_name: kidney


title: Fos-/- splenocytes expressing GFP

description: Fos-/- splenocytes were infected with GFP-virus and were co-cultured with stromal ST2-T cells for 6 days in the presence of dexamethasone and 1,25-dihydroxyvitaminD3. Cells were harvested in toto.

source_name: Fos-/- splenocytes infected with GFP-virus under an osteoclastogenic condition


title: Dahl Salt-sensitive (S) rat-sample 1 of 3


title: Fos-/- splenocytes

description: Fos-/- splenocytes were co-cultured with stromal ST2-T cells for 6 days in the presence of dexamethasone and 1,25-dihydroxyvitaminD3, and were harvested in toto.

source_name: Fos-/- splenocytes-derived osteoclastogenic co-culture


title: Fos+/+ splenocytes

description: wild-type splenocytes were co-cultured with stromal ST2-T cells for 6 days in the presence of dexamethasone and 1,25-dihydroxyvitaminD3, and were harvested in toto.

source_name: Fos+/+ splenocytes-derived osteoclastogenic co-culture


title: normal monocyte 3

status: Public on Sep 15 2004

city: Seattle

first: Lynn

last: Graf

state: WA

address: 1100 Fairview Ave. N. D1-100

department: Clinical Research Division

institute: Fred Hutchinson Cancer Research Center

description:
CD14+ cells were isolated from normal peripheral blood mononuclear cells by Dako Tuek4 antibody and Rat anti-mouse IgG2a+b magnetic bead selection to >95% purity.   Total RNA was isolated with Qiagen RNeasy columns and converted to biotin-labeled cRNA by standard Affymetrix protocols. Targets were produced using standard Affymetrix procedures from about 12ug of total RNA. For analysis with MAS5 the sample was scaled to an arbitrary value of 1000 by overall hybridization intensity to allow comparison of multiple samples.
Keywords = monocyte, CD14

organism: Homo sapiens

source_name: normal CD14+ cells from peripheral blood


title: CON_A

description:
CONTROL MYOTUBES
C2C12 mouse myoblasts (American Type Culture Collection, Manassas, VA) were maintained in growth medium (DMEM supplemented with 10% Fetal Bovine serum, Invitrogen Corporation, Carlsbad, CA) in 5% CO2.  Cells were plated at a density of 40-50% in 100mm dishes.  When cells reached ~90% confluency 24 hours later, they were switched to differentiation media (DMEM containing 2% horse serum; GIBCO, Invitrogen Corporation, Carlsbad, CA) which was subsequently changed every 48 hours. All cells were allowed to differentiate for 4 days with feeding every two days (day 0, 2, and 4).  Beginning at day 4, control cells were re-fed every 48 hours whereas experimental cells were not re-fed.  After an additional 4 days (8 days post differentiation), cells were harvested and total RNA was isolated from control and "starved" (non re-fed cells)
Keywords = skeletal muscle
Keywords = atrophy


title: normal monocyte 5


title: G-PBMC monocyte 3

description:
CD14+ cells were isolated from peripheral blood mononuclear cells collected from normal donors after 3 days of G-CSF stimulation. Dako Tuek4 antibody and Rat anti-mouse IgG2a+b magnetic bead selection were used to isolate cells (>95% purity).  Total RNA was isolated with Qiagen RNeasy columns and converted to biotin-labeled cRNA by standard Affymetrix protocols. Targets were produced using standard Affymetrix procedures from about 12ug of total RNA. For analysis with MAS5 the sample was scaled to an arbitrary value of 1000 by overall hybridization intensity to allow comparison of multiple samples.
Keywords = monocyte, CD14, GPBMC

source_name: CD14+ cells from G-CSF mobilized peripheral blood


title: G-PBMC monocyte 1


title: G-PBMC monocyte 4


title: G-PBMC monocyte 5


title: Fos+/+ bone-marrow

description: wild-type bone marrow cells were co-cultured with stromal ST2-T cells for 6 days in the presence of dexamethasone and 1,25-dihydroxyvitaminD3, and were harvested in toto.

source_name: Fos+/+ bone-marrow derived osteoclastogenic co-culture


title: normal monocyte 1


title: sample L 18.5 wt

first: Maria

middle: Isabel

last: Ramirez

address: 72 E. Concord St. E603

department: Medicine

institute: Boston University School of Medicine

description: Total RNA, labeled using the ENZO kit (Affymetrix).

source_name: Wild type fetal lung dpc 18.5


title: sample P term wt

source_name: Wild type  lung at birth (term)


title: sample N term wt


title: normal monocyte 4


title: Normal Megakaryocytes

status: Public on Sep 17 2004

city: Modena

first: Elena

last: Tenedini

department: department of biomedical sciences

country: Italy

institute: University of Modena and Reggio Emilia

description: Normal donors BM CD34+ cells were differentiated in thrombopoietin-treated liquid suspension cultures. Briefly, CD34+ cells (80,000 /mL) were resuspended in a serum-free medium in the presence of 100 ng/mL of human recombinant thrombopoietin (TPO; Genzyme, Boston, MA). Every 3 days, viable cells were scored by Trypan blue dye exclusion and cultures were amplified with fresh serum-free medium. Each well was then supplemented with 100 ng/mL TPO. After 14 to 16 days of liquid culture, CD34-derived megakaryocytes (MKs) were purified by means of an anti-CD41a monoclonal antibody (MoAb) (Dako, Milan, Italy) directed against the glycoproteic *IIb-*3 complex and immunobeads (MPC 450 Dynabeads; Dynal, Oslo, Norway), as previously described (27). The purity of MKs was determined for each isolation by indirect immunofluorescence, using an anti-CD41b MoAb which reacts with a different epitope of *IIb-*3 subunit (Immunotech Inc., Westbrook, ME), followed by a goat anti-mouse IgG, covalently linked to fluorescein (Becton Dickinson, San Jose, CA).

source_name: Bone marrow, TPO treated, CD34 posistive cells (6 donors pool)


title: sample O term wt


title: G-PBMC monocyte 2


title: sample J 18.5 wt


title: Essential Thrombocythemia (ET) Megakaryocytes

description: Essential Throbocytemia BM CD34+ cells were differentiated in thrombopoietin-treated liquid suspension cultures. Briefly, CD34+ cells (80,000 /mL) were resuspended in a serum-free medium in the presence of 100 ng/mL of human recombinant thrombopoietin (TPO; Genzyme, Boston, MA). Every 3 days, viable cells were scored by Trypan blue dye exclusion and cultures were amplified with fresh serum-free medium. Each well was then supplemented with 100 ng/mL TPO. After 14 to 16 days of liquid culture, CD34-derived megakaryocytes (MKs) were purified by means of an anti-CD41a monoclonal antibody (MoAb) (Dako, Milan, Italy) directed against the glycoproteic *IIb-*3 complex and immunobeads (MPC 450 Dynabeads; Dynal, Oslo, Norway), as previously described (27). The purity of MKs was determined for each isolation by indirect immunofluorescence, using an anti-CD41b MoAb which reacts with a different epitope of *IIb-*3 subunit (Immunotech Inc., Westbrook, ME), followed by a goat anti-mouse IgG, covalently linked to fluorescein (Becton Dickinson, San Jose, CA).

source_name: Bone marrow, TPO treated, Cd34 positive cells (6 ET patients pool)


title: normal monocyte 2


title: sample M 18.5 wt


title: sample K 18.5 wt


title: sample I 18.5 wt


title: sample H term homo

source_name: T1alpha (-/-) lung at birth (term)


title: sample F term homo


title: sample D 18.5 homo

source_name: T1alpha (-/-) fetal lung dpc 18.5


title: sample G term homo


title: sample B 18.5 homo


title: sample A 18.5 homo


title: sample E 18.5 homo


title: P.sojae infection of soybean at 48h rep3 #28

status: Public on Sep 14 2004

city: London

first: Mark

last: Gijzen

state: ON

address: 1391 Sandford St

department: Agriculture & AgriFood Canada

country: Canada

institute: SCPFRC London

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000120521

organism:
Glycine max
Phytophthora sojae

source_name: 48h infection, biol rep 3

source_name: 48h control, biol rep 3


title: P.sojae infection of soybean at 48h rep3 #29

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000000019

source_name: 48h infected, biol rep 3


title: P.sojae infection of soybean at 48h rep3 #27

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000120523


title: P.sojae infection of soybean at 48h rep3 #25

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000120531


title: P.sojae infection of soybean at 24h rep3 #24

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000000018

source_name: 24h infected, biol rep 3

source_name: 24h control, biol rep 3


title: P.sojae infection of soybean at 24h rep3 #21

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000120084


title: P.sojae infection of soybean at 48h rep3 #26

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000120522


title: P.sojae infection of soybean at 48h rep3 #30

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000000020


title: P.sojae infection of soybean at 24h rep3 #19

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000120518


title: P. sojae infection of soybean at 24h rep3 #20

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000120534


title: P.sojae infection of soybean at 24h rep3 #23

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000000017


title: P.sojae infection of soybean at 12h rep3 #17

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000000015

source_name: 12h control, biol rep 3

source_name: 12h infected, biol rep 3


title: P. sojae infection of soybean at 12h rep3 #16

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000000044


title: P. sojae infection of soybean at 12h rep3 #15

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000000043


title: P.sojae infection of soybean at 24h rep3 #22

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000120085


title: P.sojae infection of soybean at 12h rep3 #14

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000120524


title: P.sojae infection of soybean at 12h rep3 #18


title: P. sojae infection of soybean at 6h rep3 #12

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000000033

source_name: 6h infected, biol rep 3

source_name: 6h control biol rep 3


title: P.sojae infection of soybean at 6h rep 3 #9

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000000034

source_name: 6h control, biol rep 3


title: P. sojae infection of soybean at 12h rep3 #13

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000120089


title: P.sojae infection of soybean at 6h rep3 #8

description:
Soybean cv Harasoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P. sojae race 2, isolate P6497
Lot batch = 2000120525


title: P. sojae infection of soybean 6h, rep 3 #10

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000000035


title: P.sojae infection of soybean at 6h rep 3 #7

description:
Soybean cv Harasoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P. sojae race 2, isolate P6497
Lot batch = 2000120090


title: P. sojae infection of soybean at 6h rep 3 #11

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P.sojae race 2, isolate 6497
Lot batch = 2000000032

source_name: 6h infected biol rep 3


title: P.sojae infection of soybean at 3h rep3 #6

description:
Soybean cv Harasoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P. sojae race 2, isolate P6497
Lot batch = 2000000031

source_name: 3h infected, biol rep 3

source_name: 3h control, biol rep 3


title: P.sojae infection of soybean at 3h rep3, #5

description:
Soybean cv Harasoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P. sojae race 2, isolate P6497
Lot batch = 2000000030


title: P.sojae infection of soybean at 3h rep3 #2

description:
Soybean cv Harasoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P. sojae race 2, isolate P6497
Lot batch = 2000120080


title: P.sojae infection of soybean at 24h rep 2 #8

description:
Soybean cv harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P. sojae race 2, isolate P6497
Lot batch = 2000000038

source_name: 24h infected biol rep 2

source_name: 24h control biol rep 2


title: P. sojae infection of soybean at 48h rep2 #10

description:
Soybean cv harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P. sojae race 2, isolate P6497
Lot batch = 2000002651

source_name: 48h infected biol rep 2

source_name: 48h control biol rep 2


title: P.sojae infection of soybean 48h rep2 #9

description:
Soybean cv harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P. sojae race 2, isolate P6497
Lot batch = 2000120532


title: sample C 18.5 homo

description: Total RNA, labeled using the ENZO kit (Affymetrix).

source_name: T1alpha (-/-) fetal lung dpc 18.5


title: P.sojae infection of soybean at 3h rep 3#4

description:
Soybean cv Harasoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P. sojae race 2, isolate P6497
Lot batch = 2000000029


title: 2 month Denervated EDL Rat8

status: Public on Sep 10 2004

city: Ann Arbor

first: Tatiana

middle: Y.

last: Kostrominova

state: MI

address: 300 N. Ingalls st.

department: Institute of Gerontology

institute: University of Michigan

description: Labeled cDNA was hybridized to the Rat Atlas 1.2 Array II membranes (Clontech Laboratories, Palo Alto, CA). Digital images were obtained with a phosphorimager (Molecular Dynamics, Sunnyvale, CA) and processed with Array Vision software (Imaging Research, St. Catharine, Ontario, Canada). Linear regression method of data normalization was used for the analysis.

source_name: 2 month denervated EDL muscle from 6 mo old Brown-Norway rat


title: P.sojae infection of soybean at 24h rep2 #7

description:
Soybean cv harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P. sojae race 2, isolate P6497
Lot batch = 2000120533


title: 2 month Denervated EDL Rat7


title: P.sojae infection of soybean 6h rep2 #3

description:
Soybean cv harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P. sojae race 2, isolate P6497
Lot batch = 2000120528

source_name: 6h control biol rep 2

source_name: 6h infected biol rep 2


title: P.sojae infection of soybean 12h rep2 #5

description:
Soybean cv harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P. sojae race 2, isolate P6497
Lot batch = 2000120530

source_name: 12h control biol rep 2

source_name: 12h infected biol rep 2


title: Control EDL Rat8

source_name: EDL muscle from 6 mo old Brown-Norway rat


title: Control EDL Rat7


title: 2 month Denervated EDL Rat6


title: P.sojae infection of soybean 3h rep3 #1

description:
Soybean cv Harasoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P. sojae race 2, isolate P6497
Lot batch = 2000120520

source_name: 3h control biol rep 3

source_name: 3h infected biol rep 3


title: P.sojae infection soybean at 48h rep1 #9

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 2, isolate P6497
Lot batch = 2000120519

source_name: 48h control, biol rep 1

source_name: 48h infected, biol rep 1


title: P.sojae infection of soybean 6h rep2 #4

description:
Soybean cv harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P. sojae race 2, isolate P6497
Lot batch = 2000000036


title: P.sojae infection soybean at 48h rep 1 #10

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 2, isolate P6497
Lot batch = 2000000042


title: P.sojae infection of soybean 3h, rep2 #2

description:
Soybean cv harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P. sojae race 2, isolate P6497
Lot batch = 2000000027

source_name: 3h infected biol rep 2

source_name: 3h control biol rep 2


title: Control EDL Rat4


title: P.sojae infection of soybean at 24h rep 1 #7

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 2, isolate P6497
Lot batch = 2000120517

source_name: 24h control, biol rep 1

source_name: 24h infected, biol rep 1


title: P.sojae infection soybean at 24h rep 1 #8

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 2, isolate P6497
Lot batch = 2000000041


title: 2 month Denervated EDL Rat1


title: 2 month Denervated EDL Rat2


title: 2 month Denervated EDL Rat3


title: P.sojae infection of soybean at 12h rep2 #6

description:
Soybean cv harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P. sojae race 2, isolate P6497
Lot batch = 200000037


title: Control EDL Rat6


title: P.sojae infection of soybean at 12h rep 1 #6

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 2, isolate P6497
Lot batch = 2000000026

source_name: 12h infected, biol rep 1

source_name: 12h control, biol rep 1


title: P.sojae infection of soybean at 3h rep 3,#3

description:
Soybean cv Harasoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P. sojae race 2, isolate P6497
Lot batch = 2000000028

source_name: 3h control, biol rep 3

source_name: 3h infected, biol rep 3


title: 2min DeltaPDR1 benomyl time course

status: Public on Sep 07 2004

city: Paris

first: Gaëlle

last: Lelandais

address: 46, rue d'Ulm

department: Biologie

country: France

institute: Ecole Normale Supérieure

description: Time-course analyses of the modifications of the yeast gene expression program which immediately follows addition of the antimitotic drug benomyl

organism: Saccharomyces cerevisiae

source_name: DeltaPDR1 strain with drug

source_name: DeltaPDR1 strain


title: 2 month Denervated EDL Rat4

source_name: 2 month denervated EDL muscle from 6 mo old Brown-Norway rat


title: 2 month Denervated EDL Rat5


title: P. sojae infection of soybean 3h rep1 #1

description:
Soybean cv Harosoy (Rps7),
control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 2, isolate P6497
Lot batch = 2000000021

source_name: 3h control, biol rep 1

source_name: 3h infected, biol rep 1


title: P.sojae infection of soybean at 6h rep 1 #4

description:
Soybean cv Harosoy (Rps7) control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 2, isolate P6497
Lot batch = 2000000024

source_name: 6h infected, biol rep 1

source_name: 6h control, biol rep 1


title: Control EDL Rat5

description: Labeled cDNA was hybridized to the Rat Atlas 1.2 Array II membranes (Clontech Laboratories, Palo Alto, CA). Digital images were obtained with a phosphorimager (Molecular Dynamics, Sunnyvale, CA) and processed with Array Vision software (Imaging Research, St. Catharine, Ontario, Canada). Linear regression method of data normalization was used for the analysis.

source_name: EDL muscle from 6 mo old Brown-Norway rat


title: Control EDL Rat3

source_name: EDL muscle from 6mo old Brown-Norway rat


title: 4min DeltaPDR1 benomyl time course


title: 20min WT benomyl time course

source_name: WT strain with drug

source_name: WT strain


title: 30s DeltaPDR1 benomyl time course


title: gyrase binding (ChIP-chip) no. 2

status: Public on Sep 09 2004

type: genomic

city: Saint Paul

first: Kyeong Soo

last: Jeong

state: MN

institute: University of Minnesota

description: Raw data for spatial pattern analysis of gyrase binding in E. coli MG1655 (wild type)

molecule: genomic DNA

organism: Escherichia coli

source_name: DNA detected with GyrA immunoglobulin

source_name: Reference Genomic DNA


title: Control EDL Rat1

source_name: EDL Muscle from 6 mo old Brown-Norway rat


title: Control EDL Rat2


title: gyrase binding (ChIP-chip) no. 4


title: gyrase binding (ChIP-chip) no. 5

description: Raw data for spatial pattern analysis of gyrase binding in E. coli MG1655 (gyrA D82G mutant)


title: P.sojae infection of soybean at 6h rep 1 #3

description:
Soybean cv Harosoy (Rps7) control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 2, isolate P6497
Lot batch = 2000000023

source_name: 6h control, bio rep 1


title: gyrase binding (ChIP-chip) no. 3


title: 20min DeltaPDR1 benomyl time course


title: P.sojae infection of soybean at 3h rep2 #1

description:
Soybean cv harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores of P. sojae race 2, isolate P6497
Lot batch = 2000120529

source_name: 3h control biol rep 2

source_name: 3h infected biol rep 2


title: gyrase binding (ChIP-chip) no. 8


title: 2min DeltaYAP1 benomyl time course

source_name: DeltaYAP1 strain with drug

source_name: DeltaYAP1 strain


title: 20min DeltaYAP1 benomyl time course


title: gyrase binding (ChIP-chip) no. 7


title: 10min WT benomyl time course


title: 40min WT benomyl time course


title: 4min WT benomyl time course


title: P. sojae infection of soybean 3h rep 1 #2

description:
Soybean cv Harosoy (Rps7),
control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 2, isolate P6497
Lot batch = 2000000022


title: 30s WT benomyl time course


title: 10min DeltaPDR1 benomyl time course

source_name: DeltaPDR1 strain with drug

source_name: DeltaPDR1 strain


title: 4min DeltaYAP1 benomyl time course


title: 30s DeltaYAP1 benomyl time course


title: 10min DeltaYAP1 benomyl time course


title: gyrase binding (ChIP-chip) no. 1


title: 48h_RA3

city: Cincinnati

first: Sarah

middle: S.

last: Williams

institute: Cincinnati Children's Hopital Medical Center

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
48 hour RA treated, replicate 3

source_name: murine neural crest


title: gyrase binding (ChIP-chip) no. 6


title: P.sojae infection of soybean at 12h rep 1 #5

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 2, isolate P6497
Lot batch = 2000000025

source_name: 12h control, biol rep 1

source_name: 12h infected, biol rep 1


title: 2min WT benomyl time course


title: 48h_c4

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
48 hour control, replicate 4


title: 48h_RA1

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
48 hour RA treated, replicate 1


title: 48h_RA2

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
48 hour RA treated, replicate 2


title: 24h_RA2

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
24 hour RA treated, replicate 2


title: 24h_RA3

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
24 hour RA treated, replicate 3


title: 24h_RA4

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
24 hour RA treated, replicate 4


title: 48h_c3


title: 24h_RA1

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
24 hour RA treated, replicate 1


title: 48h_c2

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
48 hour control, replicate 2


title: 24h_c3

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
24 hour control, replicate 3


title: 12h_c3

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
12 hour control, replicate 3


title: 24h_c2

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
24 hour control, replicate 2


title: 24h_c4

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
24 hour control, replicate 4


title: 12h_RA3

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
12 hour RA treated, replicate 3


title: 24h_c1

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
24 hour control, replicate 1


title: 12h_c2

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
12 hour control, replicate 2


title: 12h_c1

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
12 hour control, replicate 1


title: 12h_RA2

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
12 hour RA treated, replicate 2


title: 6h_RA1

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
6 hour RA treated, replicate 1


title: 6h_c3

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
6 hour control, replicate 3


title: 12h_RA1

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
12 hour RA treated, replicate 1


title: 6h_RA2

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
6 hour RA treated, replicate 2


title: 6h_RA3

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
6 hour RA treated, replicate 3


title: 6h_c2

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
6 hour control, replicate 2


title: 6h_c1

description: dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis


title: 48h_c1

description:
dorsal neural tube was bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (Biocoat, Becton Dickinson Labware, Bedford, MA) in DMEM with 10% horse serum in order to allow for sufficient outgrowth of neural crest cells. The RA was added the following morning; RMA Express 0.2 used to initially normalize data; GeneSpring (Silicon Genetics, Inc.) used for subsequent analysis
48 hour control, replicate 1


title: H3(K4,9,14,18,23,27Q) 1

status: Public on Sep 04 2004

city: Albany

first: Randall

middle: Heywood

last: Morse

state: NY

institute: Wadsworth Center

description: H3(K4,9,14,18,23,27Q) (CLY460); 2/18/03 sample 1

source_name: Strain CLY460


title: H3delta(1-28) 2

description: H3delta(1-28) (NSY458); 6/20/02 sample

source_name: Strain NSY458


title: rpd3 delete H4(K5,8,12,16Q) 2

description: rpd3 delete H4(K5,8,12,16Q) (RMY492); 2/12/03 sample 2

source_name: Strain RMY492


title: rpd3 delete H3delta(1-28) 2

description: rpd3 delete H3delta(1-28) (NSY459); 6/20/02 sample

source_name: Strain NSY459


title: H4(K5,8,12,16Q) 1

description: H4(K5,8,12,16Q) (RMY491); 2/12/03 sample 1

source_name: Strain RMY491


title: H4delta(2-26) 1

description: H4delta(2-26) (NSY438); 4/22/02 sample

source_name: Strain NSY438


title: rpd3 delete H4(K5,8,12,16Q) 1

description: rpd3 delete H4(K5,8,12,16Q) (RMY492); 2/12/03 sample 1


title: H3delta(1-28) 1

description: H3delta(1-28) (NSY458); 4/22/02 sample


title: Wild type 2

description: Wild type (NSY429); 7/17/02 sample

source_name: Strain NSY429


title: Wild type 3

description: Wild type (NSY429); 3/30/03 sample


title: H4(K5,8,12,16Q) 2

description: H4(K5,8,12,16Q) (RMY491); 2/12/03 sample 2


title: rpd3 deletion 1

description: rpd3 delete (NSY430), 4/22/02 sample

source_name: Strain NSY430


title: H3(K4,9,14,18,23,27Q) 3

description: H3(K4,9,14,18,23,27Q) (CLY460); 3/19/03 sample


title: Wild type 1

description: Wild type (NSY429); 6/20/02 sample


title: Rpd3 deletion 2

description: rpd3 delete (NSY430), 6/20/02 sample


title: RH_RRE2_swarmer ref_swarmer ref_2D_3

status: Public on Sep 02 2004

city: Austin

first: Rasika

last: Harshey

state: TX

department: Section of Molecular Genetics and Microbiology

institute: Institute of Cellular and Molecular Biology

description:
mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation vs mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation
User - TWang
Date_of_Scan = 2003/09/18 10:58:57

organism: Salmonella enterica subsp. enterica serovar Typhimurium


title: rpd3 delete H3delta(1-28) 1

description: rpd3 delete H3delta(1-28) (NSY459); 4/22/02 sample


title: RH_RRE2_swarmer ref_swarmer ref_2D_1

source_name: mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation


title: RH_RRE2_mRNA from swarming cells on 0.6%_1.5% agar plates at 3h _8h_2D_1

description:
Salmonella typhimurium mRNA from swarming cells on 1.5% agar at 8h after inoculation
User - TWang
Date_of_Scan = 2003/08/19 12:21:19

source_name: mRNA from swarming cells on 1.5% agar_8h after inoculation

source_name: swarmer ref


title: RH_RRE2_swarmer ref_vs_swarmer_6h_2D_1

description:
swarmer ref_vs_mRNA from swarming cells on 1.5% agar plates at 6h after inoculation
User - TWang
Date_of_Scan = 2003/08/28 09:35:38


title: RH_RRE2_swarmer ref_Bacto_agar_plate_no_LB_2D_3

description:
Salmonella typhimurium swarmer ref on Bacto agar plate without LB
User - TWang
Date_of_Scan = 2003/07/02 11:43:24

source_name: swarmer ref Bacto agar plate (no LB)


title: RH_RRE2_swarmer ref_vs_swarmer_6h_2D_3

source_name: mRNA from swarming cells on 1.5% agar plates at 6h after inoculation


title: RH_RRE2_swarmer ref_Petri_dish_surface_2D_3

description:
Salmonella typhimurium swarmer ref on petri dish surface
User - TWang
Date_of_Scan = 2003/07/02 12:37:23

source_name: swarmer ref on petri dish surface


title: H4delta(2-26) 2

description: H4delta(2-26) (NSY438); 8/12/02 sample


title: RH_RRE2_mRNA from swarming cells on 0.6%_1.5% agar plates at 3h _8h_2D_2


title: RH_RRE2_mRNA from swarming cells on 0.6%_1.5%agar_3h_v_5h_2D_1

description:
Salmonella typhimurium mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation with 1.5% agar for 5h incubation
User - TWang
Date_of_Scan = 2003/08/19 12:00:59

source_name: mRNA from swarming cells on 1.5% agar for 5h


title: RH_RRE2_swarmer ref_Petri_dish_surface_2D_2


title: RH_RRE2_swarmer ref_vs_swarmer_6h_2D_2


title: RH_RRE2_14028_QW106-7_OD0.6_Broth_without_glucose_2D_1

description:
Salmonella typhimurium 14028 v QW106-7 in broth without glucose at OD 0.6
User - TWang
Date_of_Scan = 2003/07/02 12:02:51

source_name: 14028 in broth without glucose

source_name: QW106-7 in broth without glucose


title: RH_RRE2_14028_QW106-7_OD0.6_Broth_without_glucose_2D_2


title: RH_RRE2_mRNA from swarming cells on 0.6%_1.5% agar plates at 3h _8h_2D_3


title: RH_RRE2_mRNA from swarming cells on 0.6%_1.5%agar_3h_v_5h_2D_2


title: RH_RRE2_swarmer ref_Bacto_agar_plate_no_LB_2D_1


title: RH_RRE2_swarmer ref_Bacto_agar_plate_no_LB_2D_2


title: RH_RRE2_swarmer ref_14028_4h_plate_2D_1

description:
Salmonella typhimurium swarmer ref vs 14028_4h_plate
User - TWang
Date_of_Scan = 2003/04/17 12:22:01


title: RH_RRE2_14028_QW106-7_OD0.6_Broth_without_glucose_2D_3


title: RH_RRE2_mRNA from swarming cells on 0.6%_1.5%agar_3h_v_5h_2D_3


title: RH_RRE2_swarmer ref_swarmer ref_2D_2


title: RH_RRE2_swarmer ref_14028_2h_plate_2D_3

description:
Salmonella typhimurium swarmer ref vs 14028_2h_plate
User - TWang
Date_of_Scan = 2003/04/17 11:39:10


title: RH_RRE2_swarmer ref_14028_2h_plate_2D_2


title: RH_RRE2_swarmer ref_Petri_dish_surface_2D_1


title: RH_RRE2_swarmer ref_14028_4h_plate_2D_3


title: RH_RRE2_swarmer ref_14028_2h_plate_2D_1


title: RH_RRE2_swarmer ref_14028_2.5h_plate_2D_3

description:
Salmonella typhimurium swarmer ref vs 14028_2.5h_plate
User - TWang
Date_of_Scan = 2003/04/17 12:06:03


title: RH_RRE2_14028_2h_plate_v_broth_2D_1

description:
Salmonella typhimurium 14028 2h broth v plate
User - TWang
Date_of_Scan = 2003/04/04 11:21:59

source_name: 14028 2h plate

source_name: 14028 2h broth


title: RH_RRE2_14028_4h_broth_v_plate_2D_3

description:
Salmonella typhimurium 14028 4h broth v plate
User - TWang
Date_of_Scan = 2003/04/04 12:05:41

source_name: 14028 4h broth

source_name: 14028 4h plate


title: RH_RRE2_14028_4h_plate_v_broth_2D_3

description:
Salmonella typhimurium 14028 4h broth v plate
User - TWang
Date_of_Scan = 2003/04/04 12:48:21


title: RH_RRE2_14028_4h_broth_v_plate_2D_2


title: RH_RRE2_14028_4h_plate_v_broth_2D_2


title: RH_RRE2_14028_2h_plate_v_broth_2D_3


title: RH_RRE2_14028_2h_plate_v_broth_2D_2


title: RH_RRE2_swarmer ref_14028_2.5h_plate_2D_1


title: RH_RRE2_14028_4h_plate_v_broth_2D_1


title: RH_RRE2_14028_cheY_2.5h_+glucose_Broth_2D_3

description:
Salmonella typhimurium 14028 vs cheY_2.5h with glucose in broth
User - TWang
Date_of_Scan = 2003/03/26 12:30:08

source_name: 14028 2.5h with glucose in broth

source_name: cheY 2.5h with glucose in broth


title: RH_RRE2_14028_4h_broth_v_plate_2D_1


title: RH_RRE2_swarmer ref_14028_4h_plate_2D_2


title: RH_RRE2_14028_2h_broth_v_plate_2D_3

description:
Salmonella typhimurium 14028 2h broth v plate
User - TWang
Date_of_Scan = 2003/04/04 11:00:17


title: RH_RRE2_14028_2h_broth_v_plate_2D_2


title: RH_RRE2_14028_2h_broth_v_plate_2D_1


title: RH_RRE2_14028_cheY_2.5h_+glucose_Broth_2D_1


title: RH_RRE2_14028_cheB_2.5h_+glucose_Broth_2D_3

description:
Salmonella typhimurium 14028 vs cheB_2.5h with glucose in broth
User - TWang
Date_of_Scan = 2003/03/26 12:11:06

source_name: cheB 2.5h with glucose in broth

source_name: 14028 2.5h with glucose in plate


title: RH_RRE2_14028_cheA_2.5h_+glucose_Broth_2D_3

description:
Salmonella typhimurium 14028 vs cheA_2.5h with glucose in broth
User - TWang
Date_of_Scan = 2003/03/21 12:33:00

source_name: cheA 2.5h with glucose in broth


title: RH_RRE2_14028_cheB_2.5h_+glucose_Broth_2D_1


title: RH_RRE2_14028_cheA_2.5h_+glucose_Broth_2D_2


title: RH_RRE2_14028_cheA_4h_+glucose_Broth_2D_3

description:
Salmonella typhimurium 14028 vs cheA_4h with glucose in broth
User - TWang
Date_of_Scan = 2003/03/21 12:13:58

source_name: cheA 4h with glucose in broth

source_name: 14028 4h with glucose in broth


title: RH_RRE2_14028_cheY_2.5h_+glucose_Broth_2D_2


title: RH_RRE2_14028_cheB_2.5h_+glucose_Broth_2D_2


title: RH_RRE2_swarmer ref_14028_2.5h_plate_2D_2

source_name: swarmer ref


title: RH_RRE2_14028_cheA_4h_+glucose_Broth_2D_1


title: RH_RRE2_14028_cheA_1.5h_+glucose_Broth_2D_2

description:
Salmonella typhimurium 14028 vs cheA_1.5h with glucose in broth
User - TWang
Date_of_Scan = 2003/03/21 11:21:12

source_name: cheA 1.5h with glucose in broth

source_name: 14028 1.5h with glucose in broth


title: RH_RRE2_14028_cheA_2.5h_+glucose_Broth_2D_1


title: RH_RRE2_14028_cheA_1.5h_+glucose_Broth_2D_1


title: RH_RRE2_14028_cheA_1.5h_+glucose_Broth_2D_3


title: RH_RRE2_14028_0.6%agar_1.5%agar_3h_2D_1

description:
Salmonella typhimurium 14028 on 0.6%agar vs 1.5% agar for 3h
User - TWang
Date_of_Scan = 2003/03/14 11:13:31


title: RH_RRE2_14028_cheB_4h on plate_2D_

description:
Salmonella typhimurium 14028 on plate vs cheB on plate for 4h
User - TWang
Date_of_Scan = 2003/03/11 11:33:04

source_name: cheB 4h on plate

source_name: 14028 4h on plate


title: RH_RRE2_14028_0.6%agar_1.5%agar_2.5h_2D_2

description:
Salmonella typhimurium 14028 on 0.6%agar vs 1.5% agar for 2.5h
User - TWang
Date_of_Scan = 2003/03/14 10:59:09


title: H3(K4,9,14,18,23,27Q) 2

description: H3(K4,9,14,18,23,27Q) (CLY460); 2/18/03 sample 2

source_name: Strain CLY460


title: RH_RRE2_14028_cheA_4h_+glucose_Broth_2D_2


title: RH_RRE2_14028_0.6%agar_1.5%agar_2h_2D_2

description:
Salmonella typhimurium 14028 on 0.6%agar vs 1.5% agar for 2h
User - TWang
Date_of_Scan = 2003/03/14 10:42:06


title: RH_RRE2_14028_0.6%agar_1.5%agar_2.5h_2D_1


title: RH_RRE2_14028_cheY_4h on plate_2D_3

description:
Salmonella typhimurium 14028 on plate vs cheY on plate for 4h
User - TWang
Date_of_Scan = 2003/02/21 12:23:31

source_name: cheY 4h on plate


title: RH_RRE2_14028_0.6%agar_1.5%agar_2h_2D_1


title: RH_RRE2_14028_0.6%agar_1.5%agar_2h_2D_3


title: RH_RRE2_14028_0.6%agar_1.5%agar_3h_2D_2


title: RH_RRE2_14028_cheA_4h on plate_2D_3

description:
Salmonella typhimurium 14028 on plate vs cheA on plate for 4h
User - TWang
Date_of_Scan = 2003/03/11 10:54:39

source_name: cheA 4h on plate


title: RH_RRE2_14028_cheA_4h on plate_2D_1


title: RH_RRE2_14028_0.6%agar_1.5%agar_2.5h_2D_3


title: RH_RRE2_14028_cheY_4h on plate_2D_2


title: RH_RRE2_14028_cheA_2h on plate_2D_1

description:
Salmonella typhimurium 14028 on plate vs cheA on plate for 2h
User - TWang
Date_of_Scan = 2003/03/11 10:36:48

source_name: cheA 2h on plate

source_name: 14028 2h on plate


title: RH_RRE2_14028_cheA_2h on plate_2D_2


title: RH_RRE2_14028_cheB_4h on plate_2D_1


title: RH_RRE2_14028_cheA_2h on plate_2D_3


title: RH_RRE2_14028_cheY_2h on plate_2D_3

description:
Salmonella typhimurium 14028 2h on plate vs cheY 2h on plate
User - TWang
Date_of_Scan = 2003/02/21 11:46:10

source_name: cheY 2h on plate


title: RH_RRE2_14028_cheB_4h on plate_2D_2


title: RH_RRE2_14028_cheA_4h on plate_2D_2


title: RH_RRE2_14028_cheB_2h on plate_2D_3

description:
Salmonella typhimurium 14028 on plate vs cheB on plate for 2h
User - TWang
Date_of_Scan = 2003/03/11 11:14:58

source_name: cheB 2h on plate


title: RH_RRE2_14028_cheB_2h on plate_2D_2


title: RH_RRE2_14028_cheY_2h on plate_2D_1


title: RH_RRE2_14028_cheY_2.5h on plate_2D_2

description:
Salmonella typhimurium 14028 on plate vs cheY on plate for 2.5h
User - TWang
Date_of_Scan = 2003/02/21 12:06:15

source_name: cheY 2.5h on plate

source_name: 14028 2.5h on plate


title: RH_RRE2_14028_0.6%agar_1.5%agar_3h_2D_3


title: RH_RRE2_14028_cheY_2.5h on plate_2D_1


title: RH_RRE2_14028_cheY_2h on plate_2D_2


title: RH_RRE2_14028_cheY_1h on plate_2D_3

description:
Salmonella typhimurium 14028 1h on plate vs cheY 1h on plate
User - TWang
Date_of_Scan = 2003/02/11 10:29:27

source_name: 14028 1h on plate

source_name: cheY 1h on plate


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) with glucose_3h_2D_1

description:
Salmonella typhimurium swarmer ref_broth timecourse with glucose_3h
User - TWang
Date_of_Scan = 2003/01/31 14:26:32

source_name: swarmer ref_3h with glucose


title: RH_RRE2_14028_cheY_1h on plate_2D_2


title: RH_RRE2_14028_cheY_1.5h on plate_2D_2

description:
Salmonella typhimurium 14028 1.5h on plate vs cheY 1.5h on plate
User - TWang
Date_of_Scan = 2003/02/11 10:47:43

source_name: 14028 1.5h on plate

source_name: cheY 1.5h on plate


title: RH_RRE2_14028_cheY_1h on plate_2D_1


title: RH_RRE2_14028_cheY_1.5h on plate_2D_3


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) with glucose_3h_2D_3

source_name: swarmer ref


title: RH_RRE2_14028_cheY_0h on plate_2D_3

description:
Salmonella typhimurium 14028 on plate vs cheY on plate for 0h
User - TWang
Date_of_Scan = 2003/02/21 11:28:01

source_name: cheY 0h on plate

source_name: 14028 0h on plate


title: RH_RRE2_14028_cheY_0h on plate_2D_2


title: RH_RRE2_14028_cheY_1.5h on plate_2D_1


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) with glucose_4h_2D_1

description:
Salmonella typhimurium swarmer ref_broth timecourse with glucose_4h
User - TWang
Date_of_Scan = 2003/01/31 14:41:45

source_name: swarmer ref_4h with glucose


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) with glucose_2.5h_2D_2

description:
Salmonella typhimurium swarmer ref_broth timecourse with glucose_2.5h
User - TWang
Date_of_Scan = 2003/01/31 11:59:41

source_name: swarmer ref_2.5h with glucose


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) with glucose_2.5h_2D_3


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) with glucose_2.5h_2D_1


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) with glucose_3h_2D_2


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) with glucose_1h_2D_1

description:
Salmonella typhimurium swarmer ref_broth timecourse with glucose_1h
User - TWang
Date_of_Scan = 2003/01/31 14:11:37

source_name: swarmer ref_1h with glucose


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) without glucose_0h_2D_3

description:
Salmonella typhimurium swarmer ref_broth timecourse without glucose_0h
User - TWang
Date_of_Scan = 2003/01/10 11:21:47

source_name: swarmer ref_0h without glucose


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) with glucose_4h_2D_2


title: RH_RRE2_14028_cheY_2.5h on plate_2D_3


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) with glucose_4h_2D_3


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) with glucose_0h_2D_3

description:
Salmonella typhimurium swarmer ref_broth timecourse with glucose_0h
User - TWang
Date_of_Scan = 2003/01/10 10:43:54

source_name: swarmer ref_0h with glucose


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) without glucose_0h_2D_2


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) with glucose_1h_2D_3


title: RH_RRE2_swarmer ref_timecourse on broth with glucose_5h_2D_3

description:
Salmonella typhimurium swarmer ref_broth timecourse with glucose_5h
User - TWang
Date_of_Scan = 2002/12/20 11:19:42

source_name: swarmer ref_5h with glucose


title: RH_RRE2_14028_cheY_0h on plate_2D_1


title: RH_RRE2_swarmer ref_timecourse on broth with glucose_5h_2D_2


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) with glucose_1h_2D_2


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) with glucose_0h_2D_2


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) with glucose_0.5h_2D_2

description:
Salmonella typhimurium swarmer ref_broth timecourse with glucose_0.5h
User - TWang
Date_of_Scan = 2003/01/10 11:38:11

source_name: swarmer ref_0.5h with glucose


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) without glucose_0h_2D_1


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) with glucose_0h_2D_1


title: RH_RRE2_swarmer ref_timecourse on hard agar plate (1.5%) with glucose_0.5h_2D_1


title: RH_RRE2_14028_cheY_4h on plate_2D_1

description:
Salmonella typhimurium 14028 on plate vs cheY on plate for 4h
User - TWang
Date_of_Scan = 2003/02/21 12:23:31

source_name: cheY 4h on plate

source_name: 14028 4h on plate


title: RH_RRE2_swarmer ref_timecourse on broth with glucose_1.5h_2D_2

description:
Salmonella typhimurium swarmer ref_broth timecourse with glucose_1.5h
User - TWang
Date_of_Scan = 2002/12/20 11:00:32

source_name: swarmer ref_1.5h with glucose


title: RH_RRE2_swarmer ref_timecourse on broth with glucose_1.5h_2D_3


title: RH_RRE2_swarmer ref_timecourse on broth with glucose_5h_2D_1


title: RH_RRE2_swarmer ref_timecourse on broth with glucose_6h_2D_1

description:
Salmonella typhimurium swarmer ref_broth timecourse with glucose_6h
User - TWang
Date_of_Scan = 2002/12/19 12:04:10

source_name: swarmer ref_6h with glucose


title: RH_RRE2_swarmer ref_timecourse on broth with glucose_1.5h_2D_1


title: RH_RRE2_swarmer ref_timecourse on broth with glucose_3h_2D_1

description:
Salmonella typhimurium swarmer ref_broth timecourse with glucose_3h
User - TWang
Date_of_Scan = 2002/12/19 11:20:38

source_name: swarmer ref_3h with glucose


title: RH_RRE2_swarmer ref_timecourse on broth without glucose_0h_2D_2

description:
Salmonella typhimurium swarmer ref_broth timecourse with glucose_0h
User - TWang
Date_of_Scan = 2002/12/17 12:08:17


title: RH_RRE2_swarmer ref_timecourse on broth with glucose_3h_2D_3


title: RH_RRE2_swarmer ref_timecourse on broth without glucose_0h_2D_1


title: RH_RRE2_swarmer ref_timecourse on broth without glucose_0h_2D_3


title: RH_RRE2_swarmer ref_timecourse on broth with glucose_1h_2D_1

description:
Salmonella typhimurium swarmer ref_broth timecourse with glucose_1h
User - TWang
Date_of_Scan = 2002/12/17 12:41:24


title: RH_RRE2_swarmer ref_timecourse on broth with glucose_3h_2D_2


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_timecourse on broth with glucose_2h_2D_2

description:
Salmonella typhimurium mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_broth timecourse with glucose_2h
User - TWang
Date_of_Scan = 2002/12/17 12:27:08

source_name: mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_2h with glucose


title: RH_RRE2_swarmer ref_timecourse on broth with glucose_6h_2D_3


title: RH_RRE2_swarmer ref_timecourse on broth with glucose_1h_2D_2


title: RH_RRE2_swarmer ref_timecourse on broth with glucose_1h_2D_3


title: RH_RRE2_swarmer ref_timecourse on broth with glucose_0.5h_2D_3

description:
Salmonella typhimurium swarmer ref_broth timecourse with glucose_0.5h
User - TWang
Date_of_Scan = 2002/12/12 09:50:55


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_timecourse on broth with glucose_2h_2D_3


title: RH_RRE2_swarmer ref_timecourse on broth with glucose_6h_2D_2


title: RH_RRE2_swarmer ref_platetimecoursew/oGlucose_0h_2D_3

description:
Salmonella typhimurium swarmer ref_ timecourse without glucose on plate
User - TWang
Date_of_Scan = 2002/12/12 10:26:28

source_name: swarmer ref without glucose on plate


title: RH_RRE2_swarmer ref_platetimecoursew/oGlucose_0h_2D_1

source_name: swarmer ref


title: RH_RRE2_swarmer ref_timecourse on broth with glucose_0.5h_2D_2


title: RH_RRE2_RH_RRE2_swarming ref_timecourse on broth with glucose_2.5h_2D_3

description:
Salmonella typhimurium mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_broth timecourse with glucose_2.5h
User - TWang
Date_of_Scan = 2002/12/12 10:10:30

source_name: mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_2.5h with glucose


title: RH_RRE2_swarmer ref_timecourse on broth with glucose_0.5h_2D_1


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_timecourse on broth with glucose_2h_2D_1


title: RH_RRE2_RH_RRE2_swarming ref_timecourse on broth with glucose_2.5h_2D_2

source_name: mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation


title: RH_RRE2_swarmer ref_platetimecoursew/oGlucose_0h_2D_2


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_timecourse_2h_2D_3

description:
Salmonella typhimurium mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_timecourse 2h
User - TWang
Date_of_Scan = 2002/11/27 11:28:02


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_broth time course with glucose_0h_2D_2

description:
Salmonella typhimurium mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_both timecourse with glucose 0h
User - TWang
Date_of_Scan = 2002/11/27 10:23:52


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_timcourse_1.5h_2D_1

description:
Salmonella typhimurium mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_timecourse of 1.5h
User - TWang
Date_of_Scan = 2002/11/27 10:45:15


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_timcourse_1.5h_2D_2


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_2D_1

description:
Salmonella typhimurium mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation
User - TWang
Date_of_Scan = 2002/11/12 11:02:14


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_broth time course with glucose_0h_2D_3


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_timcourse_1.5h_2D_3


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_2D_2


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_2D_3


title: RH_RRE2_14028@1.5%agar_3h_8h_2D_2

description:
Salmonella typhimurium 14028@1.5%agar_3h v 8h
User - TWang
Date_of_Scan = 2002/11/12 10:40:40


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_broth time course with glucose_0h_2D_1


title: RH_RRE2_14028@1.5%agar_3h_0.5h_2D_2

description:
Salmonella typhimurium 14028@1.5%agar 3h vs 14028@1.5%agar 0.5h
User - TWang
Date_of_Scan = 2002/11/12 10:16:43


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_8h_2D_3

description:
Salmonella typhimurium 14028@0.6%_timecourse on plate 3h v 8h
User - TWang
Date_of_Scan = 2002/10/24 10:53:55


title: RH_RRE2_14028@1.5%agar_3h_8h_2D_3


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_8h_2D_2


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_timecourse_2h_2D_1


title: RH_RRE2_14028@1.5%agar_3h_0.5h_2D_1


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_timecourse_2h_2D_2


title: RH_RRE2_14028@0.7%agar_cheY_2D_2

description:
Salmonella typhimurium 14028 v cheY @ 0.7% agar
User - TWang
Date_of_Scan = 2002/10/22 11:34:54

source_name: cheY


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_8h_2D_1


title: RH_RRE2_14028@0.7%agar_cheY_2D_3


title: RH_RRE2_14028@1.5%agar_3h_8h_2D_1


title: RH_RRE2_14028@1.5%agar_3h_0.5h_2D_3


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_0h_2D_2

description:
Salmonella typhimurium 14028@0.6% agar_timecourse on plate 3h v 0h
User - TWang
Date_of_Scan = 2002/10/11 11:15:19


title: RH_RRE2_14028_QW105(cheY)_1hPlate_2D_2

description:
Salmonella typhimurium 14028 v QW105(cheY) at 1.0h on plate
User - TWang
Date_of_Scan = 2002/09/25 11:16:51

source_name: SM100_1.0h on plate

source_name: QW105(cheY)_1.0h on plate


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_0h_2D_3


title: RH_RRE2_14028_QW105(cheY)_1hPlate_2D_3


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_4h_2D_3

description:
Salmonella typhimurium 14028@0.6% timecourse on plate 3h v 4h
User - TWang
Date_of_Scan = 2002/10/11 11:33:26


title: RH_RRE2_14028@0.7%agar_cheY_2D_1


title: RH_RRE2_14028_QW105(cheY)_1hPlate_2D_1


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_0h_2D_1


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_5h_2D_3

description:
Salmonella typhimurium 14028@0.6%_ timecourse on plate between 3h and 5h
User - TWang
Date_of_Scan = 2002/09/25 11:47:04


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_5h_2D_2


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_4h_2D_1


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_2.5h_2D_3

description:
Salmonella typhimurium 14028 timecourse on plate_3h v 2.5h
User - TWang
Date_of_Scan = 2002/09/25 11:33:00


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_2.5h_2D_1


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_1h_2D_2

description:
Salmonella typhimurium 14028 @0.6%_timecourse on plate_3h v 1h
User - TWang
Date_of_Scan = 2002/09/17 10:38:09


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_1h_2D_3


title: RH_RRE2_14028@0.6%_Time course on plate_3h_0h_2D_3

description:
Salmonella typhimurium LT2 Expression after tratment with 2 ug/ml Mitomycin C
User - TWang
Date_of_Scan = 2002/09/17 11:58:21


title: RH_RRE2_14028@0.6%_Time course on plate_3h_0h_2_2


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_5h_2D_1


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_2.5h_2D_2


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_0.5h_2D_3

description:
Salmonella typhimurium 14028@0.6% timecourse on plate_3h v 0.5h
User - TWang
Date_of_Scan = 2002/09/17 11:04:18


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_0.5h_2D_2


title: RH_RRE2_14028@0.6%_Time course on plate_3h_0h_2D_1


title: RH_RRE2_14028_plategrowth_3h_0.5h_2D_3

description:
Salmonella typhimurium 14028_plategrowth between 3h and 0.5h
User - TWang
Date_of_Scan = 2002/09/10 09:41:13


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_1h_2D_1


title: RH_RRE2_14028_1.5%agar_0.6%agar_2D_3

description:
Salmonella typhimurium 14028 Expression after growth on 1.5% agar versus growth on 0.6& agar
User - TWang
Date_of_Scan = 2002/09/10 10:09:24


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_0.5h_2D_1


title: RH_RRE2_14028_plategrowth_3h_0.5h_2D_2


title: RH_RRE2_14028_cheZ_3h_+glucose_broth_2D_3

description:
Salmonella typhimurium 14028 vs cheZ at 3h incubation with glucose in broth
User - TWang
Date_of_Scan = 2003/11/12 11:19:54

source_name: cheZ 3h +glucose in broth

source_name: 14028 3h +glucose in broth


title: RH_RRE2_14028_plategrowth_3h_0.5h_2D_1


title: RH_RRE2_14028_1.5%agar_0.6%agar_2D_2


title: RH_RRE2_14028_cheZ_3h_+glucose_broth_2D_2


title: RH_RRE2_14028_QW105(deltacheY)_spotting on plates_2D_2

description:
Salmonella typhimurium 14028 spotting on plates with QW105(deltacheY)
User - TWang
Date_of_Scan = 2002/08/21 12:12:40


title: RH_RRE2_14028_QW105(deltacheY)_spotting on plates_2D_3


title: RH_RRE2_14028_1.5%agar_0.6%agar_2D_1


title: RH_RRE2_14028_cheZ_3h_+glucose_broth_2D_1


title: RH_RRE2_14028_QW105(deltacheY)_spotting on plates_2D_1


title: RH_RRE2_14028_Plategrowth_3h_1h_2D_1

description:
Salmonella typhimurium LT2 Expression after tratment with 2 ug/ml Mitomycin C
User - TWang
Date_of_Scan = 2002/08/21 11:55:12


title: RH_RRE2_14028_Plategrowth_3h_1h_2D_2


title: RH_RRE2_14028_cheZ_2.5h_+glucose_broth_2D_3

description:
Salmonella typhimurium 14028 vs cheZ at 2.5h incubation with glucose in broth
User - TWang
Date_of_Scan = 2003/11/12 10:49:17

source_name: cheZ 2.5h +glucose in broth

source_name: 14028 2.5h +glucose in broth


title: RH_RRE2_14028_Plategrowth_3h_1h_2D_3


title: RH_RRE2_14028_cheZ_2.5h_+glucose_broth_2D_2


title: RH_RRE2_14028_cheY on plates pouring, 7/4's sample made on 7/11?_2D_2

description:
Salmonella typhimurium_14028_cheY on plates pouring, 7/4's sample made on 7/11?
User - TWang
Date_of_Scan = 2002/07/31 11:55:35


title: RH_RRE2_14028@0.6%_timecourse on plate_3h_4h_2D_2


title: RH_RRE2_14028_cheY in broth_2D_3

description:
Salmonella typhimurium 14028_cheY in broth
User - TWang
Date_of_Scan = 2002/07/31 11:04:08

source_name: 14028_cheY in broth


title: RH_RRE2_14028_cheY on plates pouring, 7/4's sample made on 7/11?_2D_1


title: RH_RRE2_14028_cheZ_2.5h_+glucose_broth_2D_1


title: RH_RRE2_14028_cheY in broth_2D_2


title: RH_RRE2_swarming ref_timecourse on broth with glucose_2.5h_2D_1

description:
Salmonella typhimurium mRNA from swarming cells on 0.6% agar plates at 3.0h after inoculation_broth timecourse with glucose_2.5h
User - TWang
Date_of_Scan = 2002/12/12 10:10:30


title: RH_RRE2_14028_cheY on plates pouring, 7/4's sample made on 7/11?_2D_3


title: RH_RRE2_14028_cheY in broth_2D_1


title: RH_RRE2_14028_swArmer_swImmer_2D_3

description:
Salmonella typhimurium swArmer-swImmer comparison
User - TWang
Date_of_Scan = 2002/07/26 10:01:46

source_name: 14028 swArmer

source_name: 14028 swImmer


title: RH_RRE2_14028_cheY_2.5h_+glucose_broth_2D_2

description:
Salmonella typhimurium 14028 vs cheY at 2.5h incubation with glucose in broth
User - TWang
Date_of_Scan = 2003/11/12 10:31:06

source_name: cheY 2.5h +glucose in broth


title: RH_RRE2_14028_cheY_2.5h_+glucose_broth_2D_3


title: RH_RRE2_14028_cheY_3h_+glucose_broth_2D_2

description:
Salmonella typhimurium 14028 vs cheY at 3h incubation with glucose in broth
User - TWang
Date_of_Scan = 2003/11/12 11:06:05

source_name: cheY 3h +glucose in broth


title: RH_RRE2_14028_cheY_3h_+glucose_broth_2D_1


title: RH_RRE2_14028_cheY_3h_+glucose_broth_2D_3


title: RH_RRE2_14028_swArmer_swImmer_2D_2


title: thymus-2

city: Chapel Hill

first: Scott

middle: M

last: Hammond

state: NC

department: Dept Cell and Developmental Biology

institute: University of North Carolina

description:
25 ug total RNA, PEG fractionated, was labeled with Cy3 and hybridized to the microRNA microarray.  Cy3 and Cy5 median intensities were background subtracted, filtered to remove genes that did not have cy5> 2x background.  Cy3/Cy5 log ratios were median center normalized and are represented by the ref_value.
Keywords = microRNA, miRNA

source_name: Reference oligonucleotide set

source_name: Labeled microRNA


title: brain-2


title: RH_RRE2_14028_cheY_2.5h_+glucose_broth_2D_1


title: RH_RRE2_14028_cheB_3h_+glucose_broth_2D_2

description:
Salmonella typhimurium 14028 vs cheB at 3h incubation with glucose in broth
User - TWang
Date_of_Scan = 2003/11/07 16:14:52

source_name: cheB 3h +glucose in broth


title: brain-1


title: thymus-1


title: RH_RRE2_14028_cheB_2h_+glucose_broth_2D_1

description:
Salmonella typhimurium 14028 vs cheB at 2h incubation with glucose in broth
User - TWang
Date_of_Scan = 2003/11/07 15:14:05

source_name: cheB 2h +glucose in broth

source_name: 14028 2h +glucose in broth


title: RH_RRE2_14028_cheB_2.5h_+glucose_broth_2D_1

description:
Salmonella typhimurium 14028 vs cheB at 2.5h incubation with glucose in broth
User - TWang
Date_of_Scan = 2003/11/07 15:44:29

source_name: cheB 2.5h +glucose in broth


title: RH_RRE2_14028_cheB_2h_+glucose_broth_2D_3


title: RH_RRE2_14028_swArmer_swImmer_2D_1


title: RH_RRE2_14028_cheB_3h_+glucose_broth_2D_1


title: RH_RRE2_14028_cheB_2h_+glucose_broth_2D_2


title: RH_RRE2_14028_cheB_2.5h_+glucose_broth_2D_3


title: RH_RRE2_14028_cheA_3h_+glucose_broth_2D_1

description:
Salmonella typhimurium 14028 vs cheA at 3h incubation with glucose in broth
User - TWang
Date_of_Scan = 2003/11/07 15:58:59

source_name: cheA 3h +glucose in broth


title: RH_RRE2_14028_cheA_2h_+glucose_broth_2D_3

description:
Salmonella typhimurium 14028 vs cheA at 2h incubation with glucose in broth
User - TWang
Date_of_Scan = 2003/11/07 14:51:57

source_name: cheA 2h +glucose in broth


title: RH_RRE2_14028_cheA_3h_+glucose_broth_2D_2


title: RH_RRE2_14028_cheB_2.5h_+glucose_broth_2D_2


title: heart-2


title: RH_RRE2_14028_cheA_2h_+glucose_broth_2D_1


title: heart-1


title: RH_RRE2_14028_cheA_2h_+glucose_broth_2D_2


title: ovary-2


title: RH_RRE2_14028_cheA_3h_+glucose_broth_2D_3


title: ovary-1


title: RH_RRE2_14028_cheA_2.5h_+glucose_broth_2D_3

description:
Salmonella typhimurium 14028 vs cheA at 2.5h incubation with glucose in broth
User - TWang
Date_of_Scan = 2003/11/07 15:30:09

source_name: cheA 2.5h +glucose in broth


title: lung-1


title: RH_RRE2_14028_cheA_2.5h_+glucose_broth_2D_2


title: lung-2


title: kidney-1


title: RH_RRE2_14028_cheA_2.5h_+glucose_broth_2D_1


title: RH_RRE2_14028_cheB_3h_+glucose_broth_2D_3

source_name: 14028 3h +glucose in broth


title: liver-2


title: RH_RRE2_14028_cheY_4h_+glucose_broth_2D_1

description:
Salmonella typhimurium 14028 vs cheY at 4h incubation with glucose in broth
User - TWang
Date_of_Scan = 2003/10/10 11:46:16

source_name: cheY 4h +glucose in broth

source_name: 14028 4h +glucose in broth


title: RH_RRE2_14028_cheY_4h_+glucose_broth_2D_2


title: RH_RRE2_14028_cheY_4h_+glucose_broth_2D_3


title: kidney-2


title: liver-1


title: 17 day embryo-3


title: RH_RRE2_14028_cheY_1.5h_+glucose_broth_2D_1

description:
Salmonella typhimurium 14028 vs cheY at 1.5h incubation with glucose in broth
User - TWang
Date_of_Scan = 2003/10/10 12:20:00

source_name: cheY 1.5h +glucose in broth

source_name: 14028 1.5h +glucose in broth


title: 17 day embryo-2


title: RH_RRE2_14028_cheY_1.5h_+glucose_broth_2D_2


title: RH_RRE2_14028_cheY_1.5h_+glucose_broth_2D_3


title: RH_RRE2_14028_cheB_4h_+glucose_broth_2D_3

description:
Salmonella typhimurium 14028 vs cheB at 4h incubation with glucose in broth
User - TWang
Date_of_Scan = 2003/10/10 12:01:17

source_name: cheB 4h +glucose in broth


title: RH_RRE2_14028_cheB_4h_+glucose_broth_2D_2


title: RH_RRE2_14028_cheB_4h_+glucose_broth_2D_1


title: 17 day embryo-1


title: 15 day embryo-3


title: RH_RRE2_14028_cheB_3h_+glucose_plate_2D_3

description:
Salmonella typhimurium 14028 vs cheB at 3h incubation with glucose in plate
User - TWang
Date_of_Scan = 2003/10/10 11:27:51

source_name: cheB 3h +glucose in plate

source_name: 14028 3h +glucose in plate


title: 15 day embryo-1

source_name: Reference oligonucleotide set


title: 15 day embryo-2

source_name: Labeled microRNA


title: RH_RRE2_14028_cheB_3h_+glucose_plate_2D_2


title: 11 day embryo-3


title: 11 day embryo-2


title: RH_RRE2_14028_cheB_3h_+glucose_plate_2D_1


title: RH_RRE2_14028_cheB_1.5h_+glucose_broth_2D_2

description:
Salmonella typhimurium 14028 vs cheB at 1.5h incubation with glucose in broth
User - TWang
Date_of_Scan = 2003/10/10 12:35:24

source_name: cheB 1.5h +glucose in broth


title: RH_RRE2_14028_cheA_3h_+glucose_plate_2D_2

description:
Salmonella typhimurium 14028 vs cheA at 3h incubation with glucose in plate
User - TWang
Date_of_Scan = 2003/10/10 11:13:22

source_name: cheA 3h +glucose in plate


title: RH_RRE2_14028_cheA_3h_+glucose_plate_2D_3


title: RH_RRE2_14028_cheB_1.5h_+glucose_broth_2D_3


title: 11 day embryo-1


title: 7 day embryo-3


title: embryoid body 28 day-3


title: RH_RRE2_14028_cheB_1.5h_+glucose_broth_2D_1


title: 7 day embryo-2


title: 7 day embryo-1


title: RH_RRE2_14028_cheA_3h_+glucose_plate_2D_1


title: embryoid body 3 day-2


title: embryoid body 3 day-1


title: embryoid body 28 day-2


title: ES cell-3


title: ES cell-2


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates_3h_8h_2D_2

description:
mRNA from swarming cells on 0.6% agar plates 3h vs 8h incubation
User - TWang
Date_of_Scan = 2003/09/30 11:40:31

source_name: mRNA from swarming cells on 0.6% agar plates 8h


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates_3h_8h_2D_3

source_name: mRNA from swarming cells on 0.6% agar plates 3h


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates_3h_6h_2D_2

description:
mRNA from swarming cells on 0.6% agar plates 3h vs 6h incubation
User - TWang
Date_of_Scan = 2003/09/30 11:23:58

source_name: mRNA from swarming cells on 0.6% agar plates 6h


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates_3h_6h_2D_3


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates_3h_5h_2D_2

description:
mRNA from swarming cells on 0.6% agar plates 3h vs 5h incubation
User - TWang
Date_of_Scan = 2003/09/30 11:04:27

source_name: mRNA from swarming cells on 0.6% agar plates 5h


title: 0.4ug/mL PA824: DMSO, 6h ( mAdb expid=45355 )

status: Public on Sep 01 2004

city: Rockville

first: Helena

middle: I

last: Boshoff

state: MD

address: 12441 Parklawn Drive

department: LIG

institute: NIAID/ NIH

description:
H37Rv was grown to an OD650 of 0.3. At this stage, 50mL culture was treated with with 50uL drug at 0.4ug/mL (from 0.4mg/mL stock) or with equivalent amount of DMSO. RNA was extracted after 6h
array_print_batch : Mtab-05
array_print_slide : mtab5-33
mAdb_expid : 45355
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized

organism: Mycobacterium tuberculosis H37Rv

source_name: DMSO


title: 10ug/mL EMB: DMSO, 6h ( mAdb expid=44212 )

description:
H37Rv culture at OD 0.3 was treated for 6h with 10ug/mL Ethambutol (from DMSO stock) or with equivalent amount of DMSO (50uL per 50mL culture) for 6h
array_print_batch : Mtab-02
array_print_slide : mtab5-43
mAdb_expid : 44212
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized

source_name: EMB


title: embryoid body 28 day-1

description:
25 ug total RNA, PEG fractionated, was labeled with Cy3 and hybridized to the microRNA microarray.  Cy3 and Cy5 median intensities were background subtracted, filtered to remove genes that did not have cy5> 2x background.  Cy3/Cy5 log ratios were median center normalized and are represented by the ref_value.
Keywords = microRNA, miRNA


title: 1ug/mL #59: DMSO, 6h ( mAdb expid=44208 )

description:
H37Rv culture at OD 0.3 was treated for 6h with 1ug/mL #59 (from DMSO stock) or with equivalent amount of DMSO (50uL per 50mL culture) for 6h
array_print_batch : Mtab-02
array_print_slide : mtab5-40
mAdb_expid : 44208
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates_3h_5h_2D_1


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates_3h_8h_2D_1


title: embryoid body 3 day-3


title: 1ug/mL #241: DMSO, 6h ( mAdb expid=44204 )

description:
H37Rv culture at OD 0.3 was treated for 6h with 1ug/mL #241 (from DMSO stock) or with equivalent amount of DMSO (50uL per 50mL culture) for 6h
array_print_batch : Mtab-02
array_print_slide : mtab4-27
mAdb_expid : 44204
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 200uM Dipyridyl:DMSO, 6h ( mAdb expid=43765 )

description:
H37Rv at an OD of 0.3 was treated for 6h with 0.2mM Dipyridyl(2mM stock made in normal 7H9-based medium and 5mL added to 45mL culture + 50uL DMSO) whereas control culture was treated with an equivalent amount of DMSO
array_print_batch : Mtab-02
array_print_slide : mtab4-16
mAdb_expid : 43765
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized

source_name: Dipyridyl


title: 1ug/mL #109: DMSO, 6h ( mAdb expid=44182 )

description:
H37Rv culture at OD 0.3 was treated for 6h with 1ug/mL #109 (from DMSO stock) or with equivalent amount of DMSO (50uL per 50mL culture) for 6h
array_print_batch : Mtab-02
array_print_slide : mtab5-36
mAdb_expid : 44182
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 10ug/mL #109: DMSO, 6h ( mAdb expid=44197 )

description:
H37Rv culture at OD 0.3 was treated for 6h with 10ug/mL #109 (from DMSO stock) or with equivalent amount of DMSO (50uL per 50mL culture) for 6h
array_print_batch : Mtab-02
array_print_slide : mtab4-25
mAdb_expid : 44197
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: ES cell-1


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates_3h_6h_2D_1


title: 2ug/mL PA824: DMSO, 6h ( mAdb expid=45357 )

description:
H37Rv was grown to an OD650 of 0.3. At this stage, 50mL culture was treated with with 50uL drug at 2ug/mL (from 2mg/mL stock) or with equivalent amount of DMSO. RNA was extracted after 6h
array_print_batch : Mtab-05
array_print_slide : mtab5-34
mAdb_expid : 45357
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: RH_RRE2_mRNA from swarming cells on 0.6% agar plates_3h_5h_2D_3


title: 10ug/mL EMB: DMSO, 6h ( mAdb expid=44211 )

description:
H37Rv culture at OD 0.3 was treated for 6h with 10ug/mL Ethambutol (from DMSO stock) or with equivalent amount of DMSO (50uL per 50mL culture) for 6h
array_print_batch : Mtab-02
array_print_slide : mtab4-31
mAdb_expid : 44211
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 10ug/mL #59: DMSO, 6h ( mAdb expid=44209 )

description:
H37Rv culture at OD 0.3 was treated for 6h with 10ug/mL #59 (from DMSO stock) or with equivalent amount of DMSO (50uL per 50mL culture) for 6h
array_print_batch : Mtab-02
array_print_slide : mtab4-30
mAdb_expid : 44209
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 10ug/mL #59: DMSO, 6h ( mAdb expid=44210 )

description:
H37Rv culture at OD 0.3 was treated for 6h with 10ug/mL #59 (from DMSO stock) or with equivalent amount of DMSO (50uL per 50mL culture) for 6h
array_print_batch : Mtab-02
array_print_slide : mtab5-42
mAdb_expid : 44210
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 2ug/mL #121940: DMSO, 6h ( mAdb expid=43758 )

description:
H37Rv at an OD of 0.3 was treated for 6h with 2ug/mL #121940 (from stock 2mg/mL in DMSO) whereas control culture was treated with equivalent amount of DMSO
array_print_batch : Mtab-02
array_print_slide : mtab4-09
mAdb_expid : 43758
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 1ug/mL #59: DMSO, 6h ( mAdb expid=44207 )

description:
H37Rv culture at OD 0.3 was treated for 6h with 1ug/mL #59 (from DMSO stock) or with equivalent amount of DMSO (50uL per 50mL culture) for 6h
array_print_batch : Mtab-02
array_print_slide : mtab4-29
mAdb_expid : 44207
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 9ug/mL Ascididemin natural product: DMSO, 6h ( mAdb expid=43144 )

description:
H37Rv was treated at an OD of 0.3 was treated for 6h with 9ug/mL ascididemin natural product (50uL of organic extract of natural product solubilized in DMSO per 50mL culture) whereas control culture was treated with equivalent amount of DMSO
array_print_batch : Mtab-02
array_print_slide : mtab3-22
mAdb_expid : 43144
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized

source_name: Ascididemin Natural product


title: 10ug/mL #241: DMSO, 6h ( mAdb expid=44206 )

description:
H37Rv culture at OD 0.3 was treated for 6h with 10ug/mL #241 (from DMSO stock) or with equivalent amount of DMSO (50uL per 50mL culture) for 6h
array_print_batch : Mtab-02
array_print_slide : mtab4-28
mAdb_expid : 44206
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 1 ug/mL #111891: DMSO, 6h ( mAdb expid=43135 )

description:
H37Rv was treated at an OD of 0.3 was treated for 6h with 1ug/mL #111891 (25uL 2mg/mL stock in DMSO + 25 uL DMSO in 50mL culture) whereas control culture was treated with DMSO (50uL per 50mL culture).
array_print_batch : Mtab-02
array_print_slide : mtab2-37
mAdb_expid : 43135
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 1ug/mL #111891: DMSO, 6h ( mAdb expid=43137 )

description:
H37Rv was treated at an OD of 0.3 was treated for 6h with 1ug/mL #111891 (25uL 2mg/mL stock in DMSO + 25 uL DMSO in 50mL culture) whereas control culture was treated with DMSO (50uL per 50mL culture).
array_print_batch : Mtab-02
array_print_slide : mtab3-24
mAdb_expid : 43137
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 1ug/mL #111895: DMSO, 6h ( mAdb expid=43138 )

description:
H37Rv was treated at an OD of 0.3 was treated for 6h with 1ug/mL #111895 (25uL 2mg/mL stock in DMSO + 25 uL DMSO in 50mL culture) whereas control culture was treated with DMSO (50uL per 50mL culture).
array_print_batch : Mtab-02
array_print_slide : mtab2-40
mAdb_expid : 43138
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 1ug/mL #241: DMSO, 6h ( mAdb expid=44205 )

description:
H37Rv culture at OD 0.3 was treated for 6h with 1ug/mL #241 (from DMSO stock) or with equivalent amount of DMSO (50uL per 50mL culture) for 6h
array_print_batch : Mtab-02
array_print_slide : mtab5-38
mAdb_expid : 44205
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 10ug/mL #109: DMSO, 6h ( mAdb expid=44200 )

description:
H37Rv culture at OD 0.3 was treated for 6h with 10ug/mL #109 (from DMSO stock) or with equivalent amount of DMSO (50uL per 50mL culture) for 6h
array_print_batch : Mtab-02
array_print_slide : mtab5-37
mAdb_expid : 44200
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 1ug/mL #109: DMSO, 6h ( mAdb expid=44198 )

description:
H37Rv culture at OD 0.3 was treated for 6h with 1ug/mL #109 (from DMSO stock) or with equivalent amount of DMSO (50uL per 50mL culture) for 6h
array_print_batch : Mtab-02
array_print_slide : mtab4-26
mAdb_expid : 44198
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 150uM Deferoxamine: ctrl, 6h ( mAdb expid=43070 )

description:
H37Rv was treated with 150uM deferoxamine mesylate (5 mL fresh 1.5mg/mL stock in 7H9-based complete medium + 45mL culture). Control culture was left untreated(OD650 = 0.3).
array_print_batch : Mtab-01
array_print_slide : mtab1-43
mAdb_expid : 43070
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized

source_name: Deferroxamine

source_name: Ctrl


title: 9ug/mL Natural product: DMSO, 6h ( mAdb expid=43767 )

description:
H37Rv at an OD of 0.3 was treated for 6h with 9ug/mL(from organic extract of marine sponge containing ascididemin at stock concentration of 9mg/mL in DMSO) whereas control culture was treated with an equivalent amount of DMSO.
array_print_batch : Mtab-02
array_print_slide : mtab4-18
mAdb_expid : 43767
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized

source_name: Natural product


title: 4ug/mL Natural compound: DMSO, 6h ( mAdb expid=43768 )

description:
H37Rv at an OD of 0.3 was treated for 6h with 4ug/mL(from organic extract of marine sponge containing ascididemin at stock concentration of 9mg/mL in DMSO - 25uL added to 50mL culture) whereas control culture was treated with an equivalent amount of DMSO.
array_print_batch : Mtab-02
array_print_slide : mtab4-19
mAdb_expid : 43768
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized

source_name: Natural compound


title: 50ug/mL Antimycin: DMSO, 6h ( mAdb expid=43762 )

description:
H37Rv at an OD of 0.3 was treated for 6h with Antimycin A(Sigma compound at a stock concentration of 50mg/mL in DMSO) whereas control culture was treated with an equivalent amount of DMSO.
array_print_batch : Mtab-02
array_print_slide : mtab4-13
mAdb_expid : 43762
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized

source_name: Antimycin


title: 250uM Deferoxamine: DMSO, 6h ( mAdb expid=43764 )

description:
H37Rv at an OD of 0.3 was treated for 6h with Deferoxamine mesylate (made as 2mM stock in 7H9-based medium the previous day and 6.5mL added to 43mL of the culture + 50uL DMSO) whereas control culture was treated with equivalent amount of DMSO
array_print_batch : Mtab-02
array_print_slide : mtab4-15
mAdb_expid : 43764
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 0.5ug/mL Cerulenin: DMSO, 6h ( mAdb expid=43763 )

description:
H37Rv at an OD of 0.3 was treated for 6h with 0.5ug/mL Cerulenin(Sigma compound freshly made up at a stock concentration of 0.5mg/mL in DMSO) whereas control culture was treated with an equivalent amount of DMSO
array_print_batch : Mtab-02
array_print_slide : mtab4-14
mAdb_expid : 43763
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized

source_name: Cerulenin


title: 2ug/mL #111891: DMSO, 6h ( mAdb expid=43759 )

description:
H37Rv at an OD of 0.3 was treated for 6h with #111891 (stock conc of 2mg/mL in DMSO) whereas control culture was treated with an equivalent amount of DMSO.
array_print_batch : Mtab-02
array_print_slide : mtab4-10
mAdb_expid : 43759
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 10ug/mL Triclosan: DMSO, 6h ( mAdb expid=43066 )

description:
H37Rv at an OD650 of 0.3 was treated for 6h with 10ug/mL Triclosan (10ul of 50mg/mL stock added per 50mL Culture). Control culture was treated with equivalent amount of DMSO
array_print_batch : Mtab-02
array_print_slide : mtab2-27
mAdb_expid : 43066
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized

source_name: TRC


title: 2ug/mL #111895: DMSO, 6h ( mAdb expid=43760 )

description:
H37Rv at an OD of 0.3 was treated for 6h with #111895 (stock conc of 2mg/mL in DMSO) whereas control culture was treated with an equivalent amount of DMSO.
array_print_batch : Mtab-02
array_print_slide : mtab4-11
mAdb_expid : 43760
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 9ug/mL Ascididemin Natural Product: DMSO, 6h ( mAdb expid=43143 )

description:
H37Rv was treated at an OD of 0.3 was treated for 6h with 9ug/mL ascididemin natural product (50uL of organic extract of natural product solubilized in DMSO per 50mL culture) whereas control culture was treated with equivalent amount of DMSO
array_print_batch : Mtab-02
array_print_slide : mtab2-25
mAdb_expid : 43143
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 50ug/mL PA-21: DMSO, 6h ( mAdb expid=43057 )

description:
H37Rv (OD 0.3) was treated for 6h with 50ug/mL PA-21 (add 100uL of 25mg/mL stock to 50mL culture). Control culture was treated with equivalent amount of DMSO
array_print_batch : Mtab-01
array_print_slide : mtab1-34
mAdb_expid : 43057
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 1ug/mL #124196: DMSO, 6h ( mAdb expid=43140 )

description:
H37Rv was treated at an OD of 0.3 was treated for 6h with 1ug/mL #124196 (25uL 2mg/mL stock in DMSO + 25 uL DMSO in 50mL culture) whereas control culture was treated with DMSO (50uL per 50mL culture).
array_print_batch : Mtab-02
array_print_slide : mtab2-39
mAdb_expid : 43140
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 1ug/mL #124196: DMSO, 6h ( mAdb expid=43141 )

description:
H37Rv was treated at an OD of 0.3 was treated for 6h with 1ug/mL #124196 (25uL 2mg/mL stock in DMSO + 25 uL DMSO in 50mL culture) whereas control culture was treated with DMSO (50uL per 50mL culture).
array_print_batch : Mtab-02
array_print_slide : mtab3-17
mAdb_expid : 43141
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 1ug/mL #111895:DMSO, 6h ( mAdb expid=43139 )

description:
H37Rv was treated at an OD of 0.3 was treated for 6h with 1ug/mL #111895 (25uL 2mg/mL stock in DMSO + 25 uL DMSO in 50mL culture) whereas control culture was treated with DMSO (50uL per 50mL culture).
array_print_batch : Mtab-02
array_print_slide : mtab3-21
mAdb_expid : 43139
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 10ug/mL PA-1: DMSO, 6h ( mAdb expid=42684 )

description:
H37Rv at an OD of 0.3 was treated for 6h with 50ug/mL PA-1 whereas control culture was treated for 6h with an equivalent amount of DMSO (100uL in 50mL culture in 250mL roller flask).
array_print_batch : Mtab-01
array_print_slide : mtab1-33
mAdb_expid : 42684
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized


title: 100uM Dipyridyl: Ctrl, 6h ( mAdb expid=43074 )

description:
H37Rv was treated with 100uM dipyridyl(5 mL fresh 1.0mg/mL stock in 7H9-based complete medium + 45mL culture). Control culture was left untreated(OD650 = 0.3).
array_print_batch : Mtab-02
array_print_slide : mtab3-26
mAdb_expid : 43074
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio, normalized

source_name: ctrl