title: Infected root 14 hpi, n14r.gpr

description:
cotton roots 14 hours post infection with fusarium wilt compared to uninfected roots 14 hours after mock inoculation
Biological Replicate: 1, Technical Replicate: 2, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = cotton, Fusarium wilt, AtsC, virulence, in planta expressed genes


title: Infected root 14 hpi, n14hrs.gpr

status: Public on Apr 21 2005

type: RNA

city: Canberra

first: Andrew

last: Spriggs

state: ACT

address: GPO Box 1600

department: Bioinformatics Group

country: Australia

institute: CSIRO Plant Industry

description:
cotton roots 14 hours post infection with fusarium wilt compared to uninfected roots 14 hours after mock inoculation
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = cotton, Fusarium wilt, AtsC, virulence, in planta expressed genes

molecule: total RNA

organism: Gossypium hirsutum

source_name: Infected root 14hpi

source_name: Uninfected root 14hpi


title: Infected roots 2dpi, r40bn.gpr

description:
cotton roots 2 days post infection with fusarium wilt compared to root tissue 2 days after mock inoculation
Biological Replicate: 3, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = cotton, Fusarium wilt, AtsC, virulence, in planta expressed genes

source_name: Infected roots 2 dpi

source_name: Uninfected roots 2dpi


title: Infected hypocotyl 4dpi, h92cn.gpr

description:
cotton hypocotyl tissues 4 days post infection with fusarium wilt disease
Biological Replicate: 3, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = cotton, Fusarium wilt, AtsC, virulence, in planta expressed genes

source_name: Infected hypocotyl 4dpi

source_name: Uninfected hypocotyl 4dpi


title: D-8-7

city: Research Triangle Park

first: Kenneth

middle: Lyon

last: Phillips

state: NC

country: USA

institute: Paradigm Array Labs

description: Each laboratory was provided with aliquots of two different RNA samples that were prepared in one of the Consortium laboratories - a sample prepared from mouse livers (Liver RNA), and a sample prepared from equal amounts of RNA isolated from five mouse tissues (liver, kidney, lung, brain and spleen: Pooled RNA).

organism: Mus musculus

source_name: cy3 Liver5

source_name: cy5 Liver3


title: D-8-5

source_name: cy3 Liver3

source_name: cy5 Liver5


title: D-8-2

source_name: cy5 Pool


title: D-8-4

source_name: cy3 Pool


title: D-7-8


title: D-7-4


title: Infected hypocotyl 4dpi, H92.4r.gpr

description:
cotton hypocotyl tissues 4 days post infection with fusarium wilt disease
Biological Replicate: 1, Technical Replicate: 2, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = cotton, Fusarium wilt, AtsC, virulence, in planta expressed genes


title: Infected hypocotyl 4dpi, h92bn.gpr

description:
cotton hypocotyl tissues 4 days post infection with fusarium wilt disease
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = cotton, Fusarium wilt, AtsC, virulence, in planta expressed genes


title: D-6-6


title: D-7-5


title: D-7-7


title: Infected hypocotyl 3dpi, h68.3rw.gpr

description:
cotton hypocotyl tissues 3 days post infection with fusarium wilt disease
Biological Replicate: 1, Technical Replicate: 2, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = cotton, Fusarium wilt, AtsC, virulence, in planta expressed genes

source_name: Uninfected hypocotyl 3dpi

source_name: Infected hypocotyl 3dpi


title: D-7-6


title: D-7-3


title: D-6-7


title: D-7-1


title: D-6-8


title: Infected hypocotyl 3dpi, h68.3n.gpr

description:
cotton hypocotyl tissues 3 days post infection with fusarium wilt disease
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = cotton, Fusarium wilt, AtsC, virulence, in planta expressed genes


title: D-6-5


title: Infected hypocotyl 2dpi, h40.2n.gpr

description:
cotton hypocotyl tissue 2 days post infection with fusarium wilt disease
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = cotton, Fusarium wilt, AtsC, virulence, in planta expressed genes

source_name: Infected hypocotyl 2dpi

source_name: Uninfected hypocotyl 2dpi


title: Infected hypocotyl 2dpi, H40.4.gpr

description:
cotton hypocotyl tissue 2 days post infection with fusarium wilt disease
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = cotton, Fusarium wilt, AtsC, virulence, in planta expressed genes


title: D-6-2


title: Infected hypocotyl 2dpi, H92.4r.gpr

description:
cotton hypocotyl tissue 2 days post infection with fusarium wilt disease
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = cotton, Fusarium wilt, AtsC, virulence, in planta expressed genes


title: D-5-8


title: R-8-C2-7


title: Infected hypocotyl 3dpi, h68an.gpr

description:
cotton hypocotyl tissues 3 days post infection with fusarium wilt disease
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = cotton, Fusarium wilt, AtsC, virulence, in planta expressed genes


title: D-6-4


title: Infected hypocotyl 4dpi, H92.4.gpr

description:
cotton hypocotyl tissues 4 days post infection with fusarium wilt disease
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = cotton, Fusarium wilt, AtsC, virulence, in planta expressed genes


title: D-8-1


title: D-5-7


title: R-8-C2-6


title: D-6-1


title: D-7-2


title: R-8-C2-4


title: D-6-3


title: R-8-C2-3


title: D-5-6


title: D-5-4


title: D-5-2

source_name: cy3 LIver5


title: R-2-cDNA-7


title: R-8-C2-2


title: R-2-cDNA-8


title: R-2-cDNA-6


title: R-3-C2-7


title: D-4-8


title: R-8-C2-1


title: D-5-3


title: R-8-C2-8


title: R-2-cDNA-3


title: D-4-5


title: R-8-C2-5


title: R-2-cDNA-4


title: D-5-1


title: R-3-C2-5


title: D-4-4


title: R-3-C2-6


title: R-3-C2-8


title: R-3-C2-3


title: C-7-3


title: C-7-4


title: D-4-7


title: R-2-C2-8


title: D-4-3


title: C-7-2


title: D-4-6


title: C-7-1


title: R-2-cDNA-1


title: D-4-2


title: R-2-C2-7


title: C-6-6


title: R-3-C2-4


title: C-6-8


title: C-6-7


title: R-3-C2-2


title: C-6-3


title: R-2-C2-6


title: R-2-C2-5


title: D-3-8


title: C-6-2


title: C-6-4


title: R-2-cDNA-5


title: C-6-5


title: R-3-C2-1


title: R-2-C2-4


title: C-6-1


title: C-5-8


title: D-3-7


title: D-3-5


title: C-5-6


title: D-3-4


title: C-5-7


title: R-2-C2-1


title: R-2-C2-3


title: D-5-5


title: R-6-oligo-8


title: D-3-6


title: C-5-2


title: D-4-1


title: C-5-3


title: C-5-5


title: C-5-4


title: C-5-1


title: C-4-7


title: R-6-oligo-7


title: R-6-oligo-6


title: R-6-oligo-5


title: R-2-cDNA-2


title: C-4-8


title: C-4-6


title: R-2-C2-2


title: C-4-3


title: C-4-5


title: D-3-2


title: D-3-3


title: C-4-4


title: C-4-1


title: R-6-oligo-4


title: D-2-7


title: D-2-6


title: C-3-8


title: R-6-oligo-3


title: D-2-8


title: R-4-oligo-8


title: C-4-2


title: R-6-oligo-1


title: R-6-oligo-2


title: D-3-1


title: R-4-oligo-7


title: C-3-5


title: R-5-cDNA-8


title: C-3-4


title: C-3-7


title: C-3-6


title: D-2-5


title: R-5-cDNA-7


title: C-3-3


title: R-4-oligo-6


title: C-3-2


title: C-3-1


title: C-2-8


title: R-5-cDNA-6


title: R-4-oligo-4


title: D-2-4


title: R-4-oligo-3


title: R-4-oligo-2


title: R-4-oligo-5


title: D-2-3


title: D-1-7


title: D-2-2


title: C-2-5


title: D-1-8


title: R-5-cDNA-4


title: R-4-oligo-1


title: C-2-6


title: C-2-4


title: D-2-1


title: R-5-cDNA-3


title: R-5-cDNA-1


title: R-5-cDNA-2


title: R-3-cDNA-7


title: R-3-cDNA-8


title: C-2-3


title: C-2-7


title: R-3-cDNA-5


title: R-3-cDNA-4


title: D-1-1


title: R-3-cDNA-6


title: C-2-2


title: R-5-cDNA-5


title: R-3-cDNA-3


title: C-1-8


title: C-1-6


title: C-1-7


title: R-3-cDNA-1


title: R-3-cDNA-2


title: D-1-6


title: D-1-5


title: C403A, no treatment;whole organism;NONE;TFIIH mutant C4;37667

status: Public on Apr 20 2005

city: San Diego

first: John

middle: R

last: Walker

state: CA

address: 10675 John Jay Hopkins

institute: Genomics Institute of the Novartis Research Foundation

description:
no treatment
Keywords = C403A, no treatment

organism: Saccharomyces cerevisiae

source_name: yeast


title: C-1-1


title: C406A, no treatment;whole organism;NONE;TFIIH mutant C4;37671

description:
no treatment
Keywords = C406A, no treatment


title: C-1-4


title: C-2-1


title: C406A, no treatment;whole organism;NONE;TFIIH mutant C4;37672


title: D-1-2


title: C403A, no treatment;whole organism;NONE;TFIIH mutant C4;37668


title: wt, MMS;whole organism;MMS;wildtype;37666

description:
methyl methanesulfonate (MMS) treatment was 0.03% for 30 minutes
Keywords = wt, MMS


title: C-1-2


title: R-1-cDNA-3


title: R-1-cDNA-6


title: R-1-cDNA-5


title: C406A, MMS;whole organism;MMS;TFIIH mutant C406A;37673

description:
methyl methanesulfonate (MMS) treatment was 0.03% for 30 minutes
Keywords = C406A, MMS


title: C403A, MMS;whole organism;MMS;TFIIH mutant C403A;37670

description:
methyl methanesulfonate (MMS) treatment was 0.03% for 30 minutes
Keywords = C403A, MMS


title: D-1-4


title: C403A, MMS;whole organism;MMS;TFIIH mutant C403A;37669


title: wt, MMS;whole organism;MMS;wildtype;37665


title: R-1-cDNA-1


title: R-1-cDNA-2


title: R-1-cDNA-7


title: R-1-cDNA-8


title: SALK_015750WPvsCol0WP 0.5h, aIW11_124.gpr

description:
ATAF2 KO line (SALK_015750) compared to wild-type Col0 both wounded, 0.5h post-wounding
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = ATAF2, NAC-Domain, PR, gene expression regulation, wounding, transcription factor
Lot batch =

organism: Arabidopsis thaliana

source_name: Col0 WP 0.5h


title: SALK_015750WPvsCol0WP 5h, aIW11_126.gpr

description:
ATAF2 KO line (SALK_015750) compared to wild-type Col0 both wounded, 5h post-wounding
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = ATAF2, NAC-Domain, PR, gene expression regulation, wounding, transcription factor
Lot batch =

source_name: Col0 WP 5h


title: WvsNWP 4h, aIW11_118.gpr

description:
Wound site compared to non-wounded plant 4h post-wounding.
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = ATAF2, NAC-Domain, PR, gene expression regulation, wounding, transcription factor
Lot batch =

source_name: Wound-site

source_name: Non-wounded plant


title: WvsNWP 4h, aIW11_117.gpr

description:
Wound site compared to non-wounded plant 4h post-wounding.
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = ATAF2, NAC-Domain, PR, gene expression regulation, wounding, transcription factor
Lot batch =


title: SALK_015750WPvsCol0WP 5h, aIW11_125.gpr

description:
ATAF2 KO line (SALK_015750) compared to wild-type Col0 both wounded, 5h post-wounding
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = ATAF2, NAC-Domain, PR, gene expression regulation, wounding, transcription factor
Lot batch =


title: R-1-cDNA-4

description: Each laboratory was provided with aliquots of two different RNA samples that were prepared in one of the Consortium laboratories - a sample prepared from mouse livers (Liver RNA), and a sample prepared from equal amounts of RNA isolated from five mouse tissues (liver, kidney, lung, brain and spleen: Pooled RNA).


title: wt, no treatment;whole organism;NONE;wildtype;37663

description:
no treatment
Keywords = wt, no treatment


title: 35S:ATAF2-1C4 vs C24, aIW11_115.gpr

description:
ATAF2 overexpresser line 1C4 compared to wild-type C24
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = ATAF2, NAC-Domain, PR, gene expression regulation, wounding, transcription factor
Lot batch =

source_name: overexpresser

source_name: wild-type


title: 35S:ATAF2-1C4WPvsC24WP, aIW11_113.gpr

description:
ATAF2 overexpresser line 1C4 compared to wild-type C24, both 4h post-wounding
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = ATAF2, NAC-Domain, PR, gene expression regulation, wounding, transcription factor
Lot batch =

source_name: 35S:ATAF2-1C4 WP

source_name: C24 WP


title: D-1-3

source_name: cy5 Liver5


title: 35S:ATAF2-1C4WPvsC24WP, aIW11_112.gpr

description:
ATAF2 overexpresser line 1C4 compared to wild-type C24, both 4h post-wounding
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = ATAF2, NAC-Domain, PR, gene expression regulation, wounding, transcription factor
Lot batch =


title: heart of mouse subjected 4 week to chronic constant hypoxia (4B)

status: Public on Apr 18 2005

city: La Jolla

first: Dan

last: Zhou

address: CMG 103, 9500 Gilman Drive, MC0735

department: Pediatrics

institute: University of California, San Diego, School of Medicine

description: RNA samples (60ug) were extracted from the mouse heart and retrotranscribed to cDNA labeled with Cy5 (male) and Cy3 (female) individually. The cDNAs were co-hybridized with the 27K mouse microarray slide.

source_name: heart of male mouse subjected 4 week to chronic constant hypoxia.

source_name: heart of female mouse subjected 4 week to chronic constant hypoxia.


title: SALK_015750WPvsCol0WP 0.5h, aIW11_123.gpr

description:
ATAF2 KO line (SALK_015750) compared to wild-type Col0 both wounded, 0.5h post-wounding
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = ATAF2, NAC-Domain, PR, gene expression regulation, wounding, transcription factor
Lot batch =


title: heart of mouse subjected 1 week to chronic intermittent hypoxia (1B)

source_name: heart of male mouse subjected 1 week to chronic intermittent hypoxia.

source_name: heart of female mouse subjected 1 week to chronic intermittent hypoxia.


title: heart of mouse, 4 week control (4A)

source_name: heart of 4 week control male mouse

source_name: heart of 4 week control female mouse


title: SALK_015750vsCol0, aIW11_121.gpr

description:
ATAF2 KO line (SALK_015750) compared to wild-type Col0
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = ATAF2, NAC-Domain, PR, gene expression regulation, wounding, transcription factor
Lot batch =


title: wt, no treatment;whole organism;NONE;wildtype;37664


title: 35S:ATAF2-1C4 vs C24, aIW11_114.gpr

description:
ATAF2 overexpresser line 1C4 compared to wild-type C24
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = ATAF2, NAC-Domain, PR, gene expression regulation, wounding, transcription factor
Lot batch =


title: heart of mouse subjected 4 week to chronic intermittent hypoxia (4A)

source_name: heart of male mouse subjected 4 week to chronic intermittent hypoxia.

source_name: heart of female mouse subjected 4 week to chronic intermittent hypoxia.


title: heart of mouse subjected 4 week to chronic intermittent hypoxia (4B)


title: heart of mouse subjected 2 week to chronic intermittent hypoxia (2A)

source_name: heart of male mouse subjected 2 week to chronic intermittent hypoxia

source_name: heart of female mouse subjected 2 week to chronic intermittent hypoxia


title: C406A, MMS;whole organism;MMS;TFIIH mutant C406A;37674

source_name: yeast


title: heart of mouse subjected 2 week to chronic constant hypoxia (2B)

description:
RNA samples (60ug) were extracted from the mouse heart and retrotranscribed to cDNA labeled with Cy5 (male) and Cy3 (female) individually. The cDNAs were co-hybridized with the 27K mouse microarray slide.
Keywords = Hypoxia
Keywords = Heart
Keywords = Mouse
Keywords = Microarray

source_name: heart of male mouse subjected 2 week to chronic constant hypoxia

source_name: heart of female mouse subjected 2 week to chronic constant hypoxia


title: heart of mouse, 4 week control (4B)


title: 6h Kin- Cel.42

status: Public on Apr 15 2005

city: Claremont

first: Alexander

middle: C

last: Zambon

address: 517 Watson Drive

department: Biopharmaceutical Sciences

institute: Keck Graduate Institute

description: WT and Kin- S49 T-Lymphoma cells were untreated (0h) or treated with 100uM 8-CPT-cAMP for 2, 6, and 24 h.

source_name: Kin- S49 Cells 6h cAMP treatment


title: heart of mouse subjected 2 week to chronic intermittent hypoxia (2B)

source_name: heart of male mouse subjected 2 week to chronic intermittent hypoxia.

source_name: heart of female mouse subjected 2 week to chronic intermittent hypoxia.


title: 24h Kin- Cel.43

source_name: Kin- S49 Cells 24h cAMP treatment


title: 2h Kin- Cel.45

source_name: Kin- S49 Cells 2h cAMP treatment


title: heart of mouse, 1 week control (1B)

source_name: heart of 1 week control male mouse

source_name: heart of 1 week control female mouse


title: 24h kin- Cel.08


title: 6h Kin- Cel.46


title: 24h Kin Cel.47


title: heart of mouse subjected 1 week to chronic constant hypoxia (C1B)

description: RNA samples (60ug) were extracted from the mouse heart and retrotranscribed to cDNA labeled with Cy5 (male) and Cy3 (female) individually. The cDNAs were co-hybridized with the 27K mouse microarray slide (No: M5-62).

source_name: heart of male mouse subjected 1 week to chronic constant hypoxia (C1BM)

source_name: heart of female mouse subjected 1 week to chronic constant hypoxia (C1BF)


title: 6h kin- Cel.07


title: heart of mouse subjected 2 week to chronic constant hypoxia


title: heart of mouse, 2 week control (1A)

source_name: heart of 2 week control male mouse

source_name: heart of 2 week control female mouse


title: heart of mouse subjected 1 week to chronic constant hypoxia

source_name: heart of male mouse subjected 1 week to chronic constant hypoxia

source_name: heart of female mouse subjected 1 week to chronic constant hypoxia


title: heart of mouse, 1 week control (1A)


title: heart of mouse subjected 1 week to chronic intermittent hypoxia (1A)


title: C-1-5

source_name: cy3 Liver3

source_name: cy5 Liver5


title: heart of mouse, 2 week control (2B)


title: Nick 24 hours rep #2

city: East Lansing

middle: J.

last: LaPres

state: MI

address: Wilson Avenue

department: Biochemistry and Molecular Biology

institute: Michigan State University

description:
Comparison between hypoxia (1%O2) and cobalt chloride (100 uM) and deferoxamine (100 uM) and Nickel Chloride (100 uM) in Hep3B cells (human hepatocellular carcinoma cells)
Keywords = Hep3B
Keywords = hypoxia
Keywords = cobalt
Keywords = deferoxamine
Keywords = Nickel

organism: Homo sapiens

source_name: Hep3B cells


title: 24h WT Cel.19

source_name: WT S49 Cells 24h cAMP treatment


title: 2h Kin- Cel.41


title: 6h WT Cel.18

source_name: WT S49 Cells 6 h cAMP treatment


title: Nick 24 hours rep #1


title: 24h WT Cel.39


title: Light 6 hr pool vs night 6 hr rat 125

city: RTP

first: Gary

middle: A

last: Boorman

department: Division of Intramural Research Environmental Toxicology Program

institute: NIEHS

description:
The study design included
twenty-four rats sacrificed at four time points (four and ten hours after light on,
CT4, CT10, and four and ten hours after light off CT16 and CT22). To
accomplish this, the study was divided into two lighting (acclimated for two weeks
prior to study start) groups: the rats in the day group had a 12-hour light period
from 8 AM to 8 PM, while the rats in the light reversal group had a 12-hour light
period from 8 PM to 8 AM. Both serum melatonin levels and gene expression
patterns indicate that the rats were acclimated to the light/dark cycle (Boorman et
al. 2005). The entire study was replicated resulting in a total of 48 animals for
the two replicates combined.

organism: Rattus norvegicus

source_name: individual night 6 hr Rat 125

source_name: Light 6 hr pool


title: 0h WT Sample 13

source_name: WT S49 Cells


title: 2h WT Cel.17

source_name: WT S49 2 h cAMP treatment


title: 0h Kin Cel.14

source_name: Kin- S49 Cells


title: 2h Kin Cel.06

source_name: Kin- S49 Cells 2h cAMP treatment


title: 0h WT Sample 16


title: 0h Kin Cel.05

source_name: Kin- S49 Cells 0h


title: 24h WT Cel.04

source_name: WT S49 cells 24h cAMP treatment


title: 0h Kin Cel.40


title: 2h WT Cel.37

source_name: WT S49 cells 2 h cAMP treatment


title: 0h WT Sample 36

source_name: WT S49 T-lymphoma cells


title: Lab 5 Sample 1 Replicate 2

status: Public on Apr 13 2005

city: Baltimore

first: rafael

last: irizarry

state: MD

institute: Johns Hopkins University

description: Mixture of knockout RNAs

source_name: Reference 1


title: Lab 5 Sample 2 Replicate 1

description: Mixture of knockout RNAs

source_name: Reference 2


title: Lab 5 Sample 2 Replicate 2

description: Mixture of knockout RNAs


title: 0h WT Sample 01

source_name: S49 Murine T-Lymphoma Cells


title: Lab 5 Sample 1 Replicate 1

description: Mixture of knockout RNAs


title: Lab 9 Sample 2 versus Reference Replicate 2

description: RNA mixture

source_name: Reference

source_name: Sample 2


title: H11-c27

city: New York

first: Veronique

last: Bourdon

state: NY

department: Human Genetics

institute: Memorial Sloan Kettering Cancer Center

source_name: CEM


title: SALK_015750vsCol0, aIW11_122.gpr

description:
ATAF2 KO line (SALK_015750) compared to wild-type Col0
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = ATAF2, NAC-Domain, PR, gene expression regulation, wounding, transcription factor
Lot batch =


title: Lab 3 Sample 2 Replicate 2

description: Mixture of knockout RNAs


title: Lab 4 Sample 2 Replicate 1

description: Mixture of knockout RNAs


title: Lab 4 Sample 2 Replicate 2

description: Mixture of knockout RNAs


title: H11-c35


title: Lab 9 Sample 1 versus Reference Replicate 1

description: RNA mixture

source_name: Sample 1


title: Lab 10 Sample 2 versus Sample 1 Replicate 2

description: RNA mixture


title: H11-c28

source_name: wt


title: Lab 4 Sample 1 Replicate 2

description: Mixture of knockout RNAs


title: Lab 4 Sample 1 Replicate 1

description: Mixture of knockout RNAs


title: H11-c31


title: 6h WT Cel.03

source_name: S49 WT Cells 6 h cAMP treatment


title: Lab 3 Sample 2 Replicate 1

description: Mixture of knockout RNAs


title: Lab 9 Sample 1 versus Reference Replicate 2

description: RNA mixture


title: H11-c29


title: Lab 3 Sample 1 Replicate 2

description: Mixture of knockout RNAs


title: Lab 10 Sample 2 versus Sample 1 Replicate 1

description: RNA mixture


title: Lab 7 Sample 2 versus Sample 1 Replicate 2

first: Rafael

last: Irizarry

description: Samples 1 and 2 represent unique mixtures of total RNA from four knockout cell lines: PEX1, PEX6, PEX7, and PEX12.  Each of the four cell lines is deficient for one of four PEX genes (required for peroxisome biogenesis/mutations cause peroxisome biogenesis disorders).


title: H11-c33


title: H11-c32


title: Lab 3 Sample 1 Replicate 1

description: Mixture of knockout RNAs


title: H11-c34


title: H11-c36


title: beta catenin floxed flox-del heterozygote MGU74Bv2

city: Toronto

first: Brian

last: Cox

state: Ontario

address: University Ave, Rm. 884

country: Canada

institute: Samuel Lunenfeld Research Institute

description: pool of heterozygote embryos with a deleted allele and a floxed allele of beta-catenin

source_name: embryo E7.5


title: wt-flox-beta-catenin MGU74Bv2

description: pool of wild type embryos with a wild type allele and a floxed allele of beta-catenin


title: H4-148


title: R145 HP

city: Washington

first: Timothy

last: McCaffrey

state: DC

address: 2300 I Street NW

department: Department of Biochemisty & Molecular Biology

institute: The George Washington University

description:
human SMC resistant to TGF and fas ligand
HP is high passage

source_name: SMC


title: Lab 7 Sample 2 versus Sample 1 Replicate 1


title: S145 HP CON

description:
human SMC sensitive to TGF and fas ligand
HP is high passage


title: R145 HP Fas


title: H4-114


title: K19-CKO-B-cat-U74Bv2

description: pool of approximatly 50 embryos with a conditional knockout of beta catenin driven by cytokeratin 19 CRE


title: H4-145


title: R356M

description: human SMC resistant to TGF and fas ligand


title: 2h WT Cel.02

source_name: WT S49  2h cAMP treatment


title: Lab 2 Sample 1 Replicate 2

description: Mixture of knockout RNAs


title: Lab 2 Sample 2 Replicate 1

description: Mixture of knockout RNAs


title: Lab 2 Sample 2 Replicate 2

description: Mixture of knockout RNAs


title: H8-74


title: Lab 1 Sample 2 Replicate 2

description: Mixture of knockout RNAs


title: wt-flox-beta-catenin MGU74Cv2

description: pool of embryos with a wild type allele and a floxed allele of beta-catenin


title: H4-149


title: beta catenin floxed flox-del heterozygote MGU74Cv2

description: pool of embryos with a deleted allele and a floxed allele of beta-catenin


title: K19-CKO-B-cat-U74Cv2


title: Lab 2 Sample 1 Replicate 1

description: Mixture of knockout RNAs


title: R356F


title: H4-146


title: Lab 1 Sample 2 Replicate 1

description: Mixture of knockout RNAs


title: H8-72


title: K19-CKO-B-cat-U74Av2

description: Pool of aproximatly 50 E7.5 mouse embryos with a conditional knockout of beta-catenein driven by cytokearatin 19 CRE expression


title: SRA1

description: human SMC sensitive to TGF and fas ligand


title: CEM/CEM-10ug


title: S145 LP

description:
human SMC sensitive to TGF and fas ligand
LP is low passage


title: Lab 1 Sample 1 Replicate 2

description: Mixture of knockout RNAs


title: m7

description: m7/CEM affy


title: Lab 1 Sample 1 Replicate 1

description: Mixture of knockout RNAs


title: Lab 8 Sample 2 versus Sample 1 Replicate 1

description: RNA Mixture


title: SCRL LP


title: Control LIF(+)

status: Public on Apr 12 2005

city: Suita

first: Shoko

last: WATANABE

country: Japan

institute: Osaka university

description: The feeder-free mouse ES cells, E14tg2a which were cultured with 3000 U/ml LIF

source_name: mouse ES cell


title: Portal_Hypertension_Small_Mesenteric_Artery

city: Chicago

first: David

last: Machado-Aranda

state: IL

address: 240 E Huron St. McGaw Pav. #2, Rm 2530

department: Pulmonary and Critical Care Medicine

institute: Northwestern University

description:
Total RNA isolated from first and second order small mesenteric arteries of prehepatic portal hypertensive rats by partial portal vein ligation. A total of 20 rats were used to obtain a pooled RNA sample.
Keywords = small mesenteric
Keywords = vasculature
Keywords = artery
Keywords = portal hypertension

source_name: small mesenteric, vasculature, artery, total RNA, TriZOL (Invitrogen), RNeasy cleanup (QIAGEN)


title: Control_Small_Mesenteric_Artery

description:
Total RNA isolated from first and second order small mesenteric arteries of sham operated control rats. A total of 20 rats were used to obtain a pooled RNA sample.
Keywords = small mesenteric
Keywords = vasculature
Keywords = artery
Keywords = portal hypertension


title: Lab 6 Sample 2 versus Sample 1 Replicate 2 (dye swap)

description: Dyeswap of Lab 6 Sample 2 versus Sample 1 Replicate 1.  Samples 1 and 2 represent unique mixtures of total RNA from four knockout cell lines: PEX1, PEX6, PEX7, and PEX12.  Each of the four cell lines is deficient for one of four PEX genes (required for peroxisome biogenesis/mutations cause peroxisome biogenesis disorders).


title: Lab 8 Sample 2 versus Sample 1 Replicate 2 (dye swap)

description: RNA Mixture


title: Akt12 LIF(-)

description: The feeder-free mouse ES cells, E14tg2a expressing constitutively active Akt which were cultured without LIF for 4 days


title: 6h WT cel.38

description: WT and Kin- S49 T-Lymphoma cells were untreated (0h) or treated with 100uM 8-CPT-cAMP for 2, 6, and 24 h.

source_name: WT S49 Cells 6h treatment with cAMP


title: heart of mouse subjected 4 week to chronic constant hypoxia (4A)

description: RNA samples (60ug) were extracted from the mouse heart and retrotranscribed to cDNA labeled with Cy5 (male) and Cy3 (female) individually. The cDNAs were co-hybridized with the 27K mouse microarray slide.

source_name: heart of male mouse subjected 4 week to chronic constant hypoxia.

source_name: heart of female mouse subjected 4 week to chronic constant hypoxia.


title: wt-flox-beta-catenin

description: pool of e7.5 old embryos wild type beta-cat alelle and a floxed alelle


title: wt

description: wt/CEM affy


title: Control LIF(-)

description: The feeder-free mouse ES cells, E14tg2a which were cultured without LIF for 4 days


title: Akt12 LIF(+)

description: The feeder-free mouse ES cells, E14tg2a expressing constitutively active Akt which were cultured with 3000 U/ml LIF


title: SOC1 16 hrs, aIW09058.gpr

status: Public on Apr 09 2005

description:
Compare Soc1 to WT under long days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression

source_name: WT


title: SOC1 16 hrs, aIW09061.gpr

description:
Compare Soc1 to WT under long days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: Lab 6 Sample 2 versus Sample 1 Replicate 1

description: Dyeswap of Lab 6 Sample 2 versus Sample 1 Replicate 2.  Samples 1 and 2 represent unique mixtures of total RNA from four knockout cell lines: PEX1, PEX6, PEX7, and PEX12.  Each of the four cell lines is deficient for one of four PEX genes (required for peroxisome biogenesis/mutations cause peroxisome biogenesis disorders).


title: 0h Kin Cel.44

source_name: Kin- S49 Cells


title: SOC1 8Hrs, aIW09048.gpr

description:
Compare Soc1 to WT under short days (12days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: SOC1 8Hrs, aIW09038.gpr

description:
Compare Soc1 to WT under short days (12days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: Lab 9 Sample 2 versus Reference Replicate 1

description: RNA mixture


title: GI 16 hrs, aIW09077.gpr

description:
Compare GI to WT under long days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression

source_name: GI


title: GI 8 hrs, aIW09078.gpr

description:
Compare GI to WT under short days (12days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: GI 16 hrs, aIW09076.gpr

description:
Compare GI to WT under long days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: GAI 8 hrs, aIW09016.gpr

description:
Compare GAI to WT under short days (12 days)
Biological Replicate: 1, Technical Replicate: 2, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression

source_name: GAI


title: GAI 16hrs, aIW09067.gpr

description:
Compare GAI to WT under long days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FY 16 hrs, aIW09062.gpr

description:
Compare Fy to WT under long days (12days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression

source_name: FY


title: GAI 16hrs, aIW09086.gpr

description:
Compare GAI to WT under long days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: beta catenin floxed flox-del heterozygote

description: pool of e7.5 old embryos floxed and a deleted allele of beta-catenin


title: FY 16 hrs, aIW09085.gpr

description:
Compare Fy to WT under long days (12days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: GAI 8 hrs, aIW09039.gpr

description:
Compare GAI to WT under short days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: GI 8 hrs, aIW09079.gpr

description:
Compare GI to WT under short days (12days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FWA 16hrs, aIW09095.gpr

description:
Compare FWA to WT under long days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression

source_name: FWA


title: FWA 8hrs, aIW09041.gpr

description:
FWA Compared to WT under short days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FWA 16hrs, aIW09069.gpr

description:
Compare FWA to WT under long days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FY 8 hrs, aIW09040.gpr

description:
Compare FY to WT under short days for 12 days
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FY 8 hrs, aIW09049.gpr

description:
Compare FY to WT under short days for 12 days
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FPA 8hrs, aIW09035.gpr

description:
Compare FPA to WT under short days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression

source_name: FPA


title: FVE 8 hrs, aIW09050.gpr

description:
Compare FVE to WT under short days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression

source_name: FVE


title: FVE 16 Hr, aIW09063.gpr

description:
Compare FVE to WT under short days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FT 8Hrs, aIW09051.gpr

description:
Compare FT to WT under short days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression

source_name: FT


title: FVE 16 Hr, aIW09084.gpr


title: FT 8Hrs, aIW09043.gpr

description:
Compare FT to WT under short days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FT 16 hrs, aIW09064.gpr

description:
Compare FT to WT under long days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FPA 16hrs, aIW09088.gpr

description:
Compare FPA to WT under long days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FVE 8 hrs, aIW09042.gpr


title: FPA 16hrs, aIW09072.gpr

description:
Compare FPA to WT under long days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FLC 8hrs, aIW09074.gpr

description:
Compare FLC20 to WT C24 under short days (9days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FWA 8hrs, aIW09036.gpr

description:
FWA Compared to WT under short days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FHA 8 hr, aIW09044.gpr

description:
Compare FHA V WT under short days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression

source_name: FHA


title: FPA 8hrs, aIW09052.gpr

description:
Compare FPA to WT under short days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FLC 16hrs, aIW09075.gpr

description:
Compare FLC20 to C24 WT under long days (9days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FLC 8hrs, aIW09065.gpr

description:
Compare FLC20 to WT C24 under short days (9days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FHA 8 hr, aIW09053.gpr

description:
Compare FHA V WT under short days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FE 16hr, aIW09071.gpr

description:
Compare FE to WT under long days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression

source_name: FE


title: FHA 16hrs, aIW09080.gpr

description:
Compare FHA to WT (Ler) under long days (12days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FE 16hr, aIW09096.gpr

description:
Compare FE to WT under long days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FD 16hr, aIW09059.gpr

description:
FD V WT under long days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression

source_name: FD


title: FE 8 Hr, aIW09045.gpr

description:
Compare FE to WT under short days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression

source_name: Fe


title: FE 8 Hr, aIW09037.gpr

description:
Compare FE to WT under short days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FD 8 hrs, aIW09029.gpr

description:
Compare FD to WT under short days (12 days)
Biological Replicate: 1, Technical Replicate: 2, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FD 16hr, aIW09057.gpr

description:
FD V WT under long days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FCAVRN1 8hrs, aIW09094.gpr

description:
FCAVRN1 V WT long days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FD 8 hrs, aIW09054.gpr

description:
Compare FD to WT under short days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FCAVRN1 16hrs, aIW09033.gpr

description:
Compare FCAVRN1 to FCA under short days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression

source_name: FCA


title: Low HIV-1 infection of human PBMCs in vitro, without N. gonorrheae (2)

city: Boston

first: Monty

last: Montano

state: MA

address: 650 Albany Street, Bldg X, room 640

department: Medicine

institute: Boston Medical Center

description: We used Affymetrix U133A 2.0 chips to measure RNA expression levels in human PBMCs that  were infected in vitro with a dosage series of HIV-1 (Bal) for 11d, followed by 6hr stimulation with N. gonorrheae.

source_name: Peripheral blood mononuclear cells (PBMCs)


title: FCAVRN1 8hrs, aIW09070.gpr

description:
FCAVRN1 V WT long days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FCAVRN2 8hrs, aIW09032.gpr

description:
FCAVRN2 V WT under short days (12days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FCAVRN1 16hrs, aIW09031.gpr

description:
Compare FCAVRN1 to FCA under short days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: CO 8hrs, aIW09056.gpr

description:
Compare CO to WT at 12 days (short days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression

source_name: CO


title: FCAVRN2 8hrs, aIW09030.gpr

description:
FCAVRN2 V WT under short days (12days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: CO-16hr, aIW09068.gpr

description:
CO versus WT at 12 days long days
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: CO 8hrs, aIW09047.gpr

description:
Compare CO to WT at 12 days (short days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FCA 16hr, aIW09066.gpr

description:
Compare FCA to WT under long days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: CO-16hr, aIW09081.gpr

description:
CO versus WT at 12 days long days
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FCAVRN2 16hr, aIW09073.gpr

description:
Compare FCAVRN2 to FCA under long days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: Medium HIV-1 infection of human PBMCs in vitro, without N. gonorrheae (1)


title: FCAVRN2 16hr, aIW09027.gpr

description:
Compare FCAVRN2 to FCA under long days (12 days)
Biological Replicate: 1, Technical Replicate: 2, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: High HIV-1 infection of human PBMCs in vitro, without N. gonorrheae (1)


title: FCA 8hr, aIW09015.gpr

description:
COmpare FCA to WT under short days (12 days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FCA 16hr, aIW09082.gpr

description:
Compare FCA to WT under long days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: FCA 8hr, aIW09055.gpr

description:
COmpare FCA to WT under short days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: Low HIV-1 infection of human PBMCs in vitro, with N. gonorrheae (2)


title: Low HIV-1 infection of human PBMCs in vitro, without N. gonorrheae (1)


title: High HIV-1 infection of human PBMCs in vitro, without N. gonorrheae (2)


title: High HIV-1 infection of human PBMCs in vitro, with N. gonorrheae (2)


title: Medium HIV-1 infection of human PBMCs in vitro, with N. gonorrheae (1)


title: Medium HIV-1 infection of human PBMCs in vitro, with N. gonorrheae (2)


title: Infected Jurkat cells (replicate 1)

status: Public on Apr 07 2005

first: Mary

last: Lewinski

institute: The Salk Institute

description: Jurkat cells were infected at a multiplicity of infection of 1 with the LTR-Tat-IRES-GFP HIV-based vector (which transduces HIV-1 Tat and eGFP) pseudotyped with vesicular stomatitis virus G protein in the presence of 4 ug/ml Polybrene for 24 hours.

source_name: total cellular RNA from Jurkat T cells


title: C57MG/PLNCx

city: Essen

first: Ludger

last: Klein-Hitpass

address: Virchowstr. 173

department: Universitaetsklinikum

country: Germany

institute: Institut fuer Zellbiologie

description: RNA from murine mammary C57MG cells transfected with an empty control vector (PLNCx) was isolated and analyzed on Affymetrix MG-U74Av2 arrays. Sample preparation was done as recommended by the manufacturer. Images were analyzed using Affymetrix Microarray Suite 4.0 software.

source_name: C57MG cells transfected with empty control vector


title: TNFalpha-treated Jurkat cells (replicate 2)

description: Jurkat cells were treated with 10 ng/ml TNF-alpha for 17 hours.


title: High HIV-1 infection of human PBMCs in vitro, with N. gonorrheae (1)

description: We used Affymetrix U133A 2.0 chips to measure RNA expression levels in human PBMCs that  were infected in vitro with a dosage series of HIV-1 (Bal) for 11d, followed by 6hr stimulation with N. gonorrheae.


title: TNFalpha-treated Jurkat cells (replicate 1)


title: Infected Jurkat cells (replicate 3)


title: Infected Jurkat cells (replicate 2)


title: H1_P43

first: Agnes

last: Viale

address: 1275 York Avenue

department: Molecular Biology

description:
Total RNA- RNeasy extraction
Keywords = Human ES cells

source_name: Undifferentiated human ES cells


title: SF370 12-31B

status: Public on Apr 06 2005

city: College Park

first: Kevin

middle: S

last: McIver

address: 3124 Biociences Research Bldg. (413)

department: Cell Biology and Molecular Genetics

institute: University of Maryland, College Park

description: Total RNA was isolated by CsCl method, cDNA was labeled using CyScribe Post Lbeleing kit from Amersham.  Genomic DNA was labeled using Nick Translation kit from Amersham.  Labeled probes were purified with GFX columns and incorporation rates were determined using a nanodrop.  Approximately equal amounts of cDNA/gDNA were denatured and hybridized to arrays at 50C overnight followed by subsequent washes.  Arrays were scanned using GenePix software.  Output data (F635 mean -B635, F532 mean -B532, flags) from gpr file were analyzed to remove spots that did not exceed 2SD above a background threshold.  Remaining spots were normalized and ratios of cDNA to gDNA were calculated.

organism: Streptococcus pyogenes

source_name: CsCl total RNA from M1 serotype GAS SF370

source_name: genomic DNA from M1 serotype GAS SF370


title: Untreated Jurkat cells (replicate 2)

description: Jurkat cells were cultured in RPMI 1640 + 10% fetal bovine serum.


title: KSM165L 6-23A

source_name: CsCl total RNA from M1 serotype GAS KSM165L


title: KSM165L 6-23B


title: Untreated Jurkat cells (replicate 3)


title: H1-P46

source_name: Human undifferentiated ES cells


title: Untreated Jurkat cells (replicate 1)


title: H1 clone 2

description:
ES cell derived mesenchymal precursor
RNeasy extraction
Keywords = H1

source_name: total RNA


title: Low HIV-1 infection of human PBMCs in vitro, with N. gonorrheae (1)


title: KSM165L 12-31B


title: C57MG/Wnt-1

description: RNA from murine mammary C57MG cells transfected with an expression vector encoding Wnt-1 was isolated and analyzed on Affymetrix MG-U74Av2 arrays. Sample preparation was done as recommended by the manufacturer. Images were analyzed using Affymetrix Microarray Suite 4.0 software.

source_name: C57MG cells transfected with Wnt-1 expression vector


title: BM-MSC

description:
bone marrow derived mesenchymal stem cells.
RNeasy (Qiagen) extraction
Keywords = bone marrow


title: H9 clone 1

description:
ES cell derived mesenchymal precursor
RNeasy (qiagen) extraction
Keywords = H9


title: FT 16 hrs, aIW09083.gpr

first: Andrew

last: Spriggs

institute: CSIRO Plant Industry

description:
Compare FT to WT under long days (12 days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression

source_name: FT

source_name: WT


title: KSM165L 12-31A


title: JRS519 9-29B

source_name: CsCl total RNA from M6 serotype GAS JRS519

source_name: genomic DNA from M6 serotype GAS JRS4


title: H1-P41

source_name: Undifferentiated Human ES cells


title: JRS519 1-2A


title: SF370 6-23B


title: JRS4 9-29A

description: Total RNA was isolated by CsCl method, cDNA was labled using CyScribe Post labeling kit from Amersham.  Genomic DNA was labeled using Nick Translation kit from Amersham.  Labeled probes were purified with GFX columns and incorporation rates were determined using a nanodrop.  Approximately equal amounts of cDNA/gDNA were denatured and hybridized to arrays at 50C overnight followed by subsequent washes.  Arrays were scanned using GenePix software.  Output data (F635 mean-B635, F532 mean-B532, flags) from gpr file was analyzed to remove spots that did not exceed 2SD above a background threshold.  Remaining spots were normalized and ratios of cDNA to gDNA were calculated.

source_name: CsCl total RNA from M6 serotype GAS JRS4


title: SF370 12-31A


title: ERb Cont F

city: Rochester

middle: George

last: Monroe

state: MN

address: 100 2nd St SW

institute: Mayo Clinic

description:
Control treated 24 hrs
also known as Spe070

source_name: U2OS-ERb cells


title: SF370 6-23A


title: JRS519 9-29A


title: FLC 16hrs, aIW09087.gpr

city: Canberra

description:
Compare FLC20 to C24 WT under long days (9days)
Biological Replicate: 2, Technical Replicate: 1, Dye Swapped: false
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression


title: ERb E2 D

description:
E2 treated 24 hrs
also known as Spe073


title: JRS4 9-29B


title: JRS519 1-2B


title: JRS4 1-2A


title: ERb Cont G

description:
Control treated 24 hrs
also known as Spe071


title: ERb E2 A

description:
E2 treated 24 hrs
also known as Spe019


title: ERb Cont E

description:
Control treated 24 hrs
also known as Spe035


title: ERb E2 B

description:
E2 treated 24 hrs
also known as Spe022


title: ERb E2 C

description:
E2 treated 24 hrs
also known as Spe072


title: ERb Cont B

description:
Control treated 24 hrs
also known as Spe018


title: ERb 4HT A

description:
4HT treated 24 hrs
also known as Spe036


title: ERb 4HT D

description:
4HT treated 24 hrs
also known as Spe075


title: ERb Cont C

description:
Control treated 24 hrs
also known as Spe021


title: ERb 4HT C

description:
4HT treated 24 hrs
also known as Spe074


title: ERab E2 D

description:
E2 treated 24 hrs
also known as Spe078

source_name: U2OS-ERab cells


title: ERb Cont D

description:
Control treated 24 hrs
also known as Spe034


title: ERb 4HT B

description:
4HT treated 24 hrs
also known as Spe037


title: ERab E2 B

description:
E2 treated 24 hrs
also known as Spe004


title: ERb Cont A

description:
Control treated 24 hrs
also known as Spe017


title: ERab Cont G

description:
Control treated 24 hrs
also known as Spe077


title: ERab Cont A

description:
Control treated 24 hrs
also known as Spe001


title: ERab Cont E

description:
Control treated 24 hrs
also known as Spe039


title: ERab E2 A

description:
E2 treated 24 hrs
also known as Spe003


title: ERab E2 E

description:
E2 treated 24 hrs
also known as Spe079


title: ERab E2 C

description:
E2 treated 24 hrs
also known as Spe024


title: ERab Cont D

description:
Control treated 24 hrs
also known as Spe038


title: ERab Cont B

description:
Control treated 24 hrs
also known as Spe002


title: ERab Cont C

description:
Control treated 24 hrs
also known as Spe023


title: ERab Cont F

description:
Control treated 24 hrs
also known as Spe076


title: ERab 4HT A

description:
4HT treated 24 hrs
also known as Spe040


title: ERab 4HT D

description:
4HT treated 24 hrs
also known as Spe081


title: ERab 4HT B

description:
4HT treated 24 hrs
also known as Spe041


title: ERa E2 D

description:
E2 treated 24 hrs
also known as Spe067

source_name: U2OS-ERa cells


title: ERab 4HT C

description:
4HT treated 24 hrs
also known as Spe080


title: ERa Cont D

description:
Control treated 24 hrs
also known as Spe031


title: ERa E2 A

description:
E2 treated 24 hrs
also known as Spe015


title: ERa E2 C

description:
E2 treated 24 hrs
also known as Spe066


title: ERa Cont F

description:
Control treated 24 hrs
also known as Spe065


title: ERa Cont E

description:
Control treated 24 hrs
also known as Spe064


title: ERa 4HT B

description:
4HT treated 24 hrs
also known as Spe033


title: ERa 4HT D

description:
4HT treated 24 hrs
also known as Spe069


title: ERa Cont C

description:
Control treated 24 hrs
also known as Spe030


title: ERa Cont A

description:
Control treated 24 hrs
also known as Spe013


title: ERa Cont B

description:
Control treated 24 hrs
also known as Spe014


title: ERa E2 B

description:
E2 treated 24 hrs
also known as Spe016


title: Baclofen treated 1

city: Bristol

first: Mohamed

middle: T.

last: Ghorbel

address: Level 7, BRI, Marlborough street

department: Bristol Heart Institute

country: United Kingdom

institute: University of Bristol

description:
Cell Culture:
Hippocampal cells from E18 rat embryos were plated at a density of 500,000 cells per 60 mm poly-L-lysine (1mg/ml; Sigma) coated dish. Cultures were maintained at 37 C in 5% CO2 humidified incubator and used for experiments at 21 day in vitro (DIV). Control and experimental group cultures were incubated with 10 micro M TTX for 15 min followed by addition of 100 micro M baclofen or vehicle.
Total RNA preparation:
Each experimental group was compared as replicates of three. For each replicate cultured hippocampal neurones were harvested after 2 hours incubation +/- baclofen and total RNA was isolated using RNeasy Mini kit (Qiagen, UK) according to the manufacturer's protocol.
Microarray Target Labelling and Hybridisation:
Targets for cDNA microarrays were generated using 5 micro g of total RNA in a standard reverse transcription (RT) reaction. RNA was annealed, in 16 micro l water, with 1 micro g of 24-mer poly(dT) primer (Invitrogen, UK), by heating at 65oC for 10 min and cooling on ice for 2 min. The RT reaction was performed by adding 8 micro l of 5X first strand RT buffer (Life technologies, MD), 4 micro l of 20mM dNTPs minus dCTP (Pharmacia, UK), 4 micro l of 0.1M DTT, 40U of RNAse OUT (Life Technologies, MD), 6 micro l of 3000 Ci/mmol 33P-dCTP (ICN Biomedicals, UK) to the RNA/primer mixture to a final volume of 40 micro l. Two micro l (400 U) of Superscript II reverse transcriptase (Life Technologies, MD) was then added and the sample incubated for 30 min at 42oC followed by additional 2 micro l of Superscript II reverse transcriptase and another 30 min incubation. The reaction was stopped by addition of 5 micro l 0.5 M EDTA. Samples were incubated at 65oC for 30 min after addition of 10 micro l of 0.1M NaOH to hydrolyse and remove RNA. Samples were pH neutralized with 45 micro l 0.5M Tris, pH 8.0 and purified using Bio-Rad 6 purification columns (BioRad, UK). The NIA NeuroArray consists of 1152 cDNAs printed on nylon membrane in duplicate. The arrays were hybridised with alpha-33P-dCTP labelled cDNA probes overnight at 50oC in 4ml of hybridisation solution. Hybridised arrays were rinsed in 50ml of 2XSSC and 1%SDS twice at 55oC followed by two washes in 2X SSC and 1% SDS at 55oC for 15 min each. The microarrays were exposed to phosphorimager screens for 1-3 days. The screens were then scanned with Molecular Dynamics STORM PhosphorImager (Sunnyvale, CA) at 25 micro m resolution.

source_name: Cultured hippocampal neurons


title: Control 3


title: ERa 4HT C

description:
4HT treated 24 hrs
also known as Spe068


title: Baclofen treated 2


title: Baclofen treated 3


title: Control 1

source_name: Cultured hippocampal neurones


title: ERa 4HT A

description: ERa 4HT A


title: 1-month-old KPAW eye II

city: Lund

first: Tord

last: Hjalt

country: Sweden

institute: Lund University

description: 1-month-old KPAW mouse eye total RNA, prepared using Trizol and RNeasy clean-up, A260/A280 = 2.1.

source_name: 1-month-old KPAW eye


title: Control 2

description:
Cell Culture:

Hippocampal cells from E18 rat embryos were plated at a density of 500,000 cells per 60 mm poly-L-lysine (1mg/ml; Sigma) coated dish. Cultures were maintained at 37 C in 5% CO2 humidified incubator and used for experiments at 21 day in vitro (DIV). Control and experimental group cultures were incubated with 10 micro M TTX for 15 min followed by addition of 100 micro M baclofen or vehicle.

Total RNA preparation:
Each experimental group was compared as replicates of three. For each replicate cultured hippocampal neurones were harvested after 2 hours incubation +/- baclofen and total RNA was isolated using RNeasy Mini kit (Qiagen, UK) according to the manufacturer's protocol.

Microarray Target Labelling and Hybridisation:
Targets for cDNA microarrays were generated using 5 micro g of total RNA in a standard reverse transcription (RT) reaction. RNA was annealed, in 16 micro l water, with 1 micro g of 24-mer poly(dT) primer (Invitrogen, UK), by heating at 65oC for 10 min and cooling on ice for 2 min. The RT reaction was performed by adding 8 micro l of 5X first strand RT buffer (Life technologies, MD), 4 micro l of 20mM dNTPs minus dCTP (Pharmacia, UK), 4 micro l of 0.1M DTT, 40U of RNAse OUT (Life Technologies, MD), 6 micro l of 3000 Ci/mmol 33P-dCTP (ICN Biomedicals, UK) to the RNA/primer mixture to a final volume of 40 micro l. Two micro l (400 U) of Superscript II reverse transcriptase (Life Technologies, MD) was then added and the sample incubated for 30 min at 42oC followed by additional 2 micro l of Superscript II reverse transcriptase and another 30 min incubation. The reaction was stopped by addition of 5 micro l 0.5 M EDTA. Samples were incubated at 65oC for 30 min after addition of 10 micro l of 0.1M NaOH to hydrolyse and remove RNA. Samples were pH neutralized with 45 micro l 0.5M Tris, pH 8.0 and purified using Bio-Rad 6 purification columns (BioRad, UK). The NIA NeuroArray consists of 1152 cDNAs printed on nylon membrane in duplicate. The arrays were hybridised with alpha-33P-dCTP labelled cDNA probes overnight at 50oC in 4ml of hybridisation solution. Hybridised arrays were rinsed in 50ml of 2XSSC and 1%SDS twice at 55oC followed by two washes in 2X SSC and 1% SDS at 55oC for 15 min each. The microarrays were exposed to phosphorimager screens for 1-3 days. The screens were then scanned with Molecular Dynamics STORM PhosphorImager (Sunnyvale, CA) at 25 micro m resolution.


title: 1-month-old KPAW eye I


title: 5 days-old KPAW eye I

description: 5 days-old KPAW mouse eye total RNA, prepared using Trizol and RNeasy clean-up, A260/A280 = 2.1.

source_name: 5 days-old KPAW eye


title: 5 days-old KPAW eye II


title: 1-month-old wild type eye I

description: 1-month-old wild type mouse eye total RNA, prepared using Trizol and RNeasy clean-up, A260/A280 = 2.1.

source_name: 1-month-old wild type eye


title: 1-month-old wild type eye II


title: TNFalpha-treated Jurkat cells (replicate 3)

city: La Jolla

description: Jurkat cells were treated with 10 ng/ml TNF-alpha for 17 hours.

source_name: total cellular RNA from Jurkat T cells


title: 5 days-old wild type eye I

description: 5 days-old wild type C57Bl6 mouse eye total RNA, prepared using Trizol and RNeasy clean-up, A260/A280 = 2.1.

source_name: 5 days-old wild type eye


title: 5 days-old wild type eye II


title: NOD1

status: Public on Apr 05 2005

first: CBDM

last: Lab

address: 77 Avenue Louis Pasteur

department: Microbiology and Immunobiology

institute: Harvard Medical School

description:
Fetal Thymic Organ Cultre (FTOC) CD4+CD8+ thymocytes from wild-type NOD mice
Keywords = BDC2.5 FTOC thymocytes

source_name: thymocytes


title: N.pep16h2

description:
Fetal Thymic Organ Cultre (FTOC) CD4+CD8+ thymocytes from BDC2.5 transgenic mice on NOD background, peptide added 16h
Keywords = BDC2.5 FTOC thymocytes


title: NOD2


title: N.pep0h1

description:
Fetal Thymic Organ Cultre (FTOC) CD4+CD8+ thymocytes from BDC2.5 transgenic mice on NOD background, no peptide added
Keywords = BDC2.5 FTOC thymocytes


title: N.pep0h3


title: N.pep16h3


title: N.pep0h2


title: B6g7.1

description:
Fetal Thymic Organ Cultre (FTOC) CD4+CD8+ thymocytes from wild-type B6g7 mice
Keywords = BDC2.5 FTOC thymocytes


title: N.pep16h1


title: telmisartan 2

city: Berlin

first: Henning

last: Witt

address: Ihnestrasse 65

department: Hans Lehrach

institute: Max Planck Institute for Molecular Genetics

description: pooled RNA derived from three independent cell cultures treated with telmisartan/vehicle were compared

source_name: vehicle treated

source_name: telmisartan treated


title: B6g7.2


title: B.pep16h3

description:
Fetal Thymic Organ Cultre (FTOC) CD4+CD8+ thymocytes from BDC2.5 transgenic mice on B6g7 background, peptide added 16h
Keywords = BDC2.5 FTOC thymocytes


title: B.pep16h2


title: telmisartan 4


title: pioglitazone 3

description: pooled RNA derived from three independent cell cultures treated with pioglitazone/vehicle were compared

source_name: pioglitazone treated


title: telmisartan 3


title: telmisartan 1


title: B.pep0h2

description:
Fetal Thymic Organ Cultre (FTOC) CD4+CD8+ thymocytes from BDC2.5 transgenic mice on B6g7 background, no peptide added
Keywords = BDC2.5 FTOC thymocytes


title: B.pep0h3


title: irbesartan 2

description: pooled RNA derived from three independent cell cultures treated with irbesartan/vehicle were compared

source_name: irbesartan treated


title: pioglitazone 4


title: B.pep16h1


title: pioglitazone 2


title: irbesartan 3


title: irbesartan 1


title: pioglitazone 1


title: irbesartan 4


title: B.pep0h1


title: D1321

status: Public on Apr 04 2005

first: Katia

last: Basso

address: 1150 St. Nicholas Avenue

department: Institute for Cancer Genetics

institute: Columbia University

description: Diffuse Large B cell lymphoma biopsy. The frozen tissue was homogeneized in Trizol reagent and RNA was purified following manufacturer instructions. Targets were produced starting from 5 ug of total RNA following standard Affymetrix protocol.

source_name: Diffuse large B cell lymphoma


title: FL-14750

description: Follicular lymphoma biopsy was digested and single cells suspension was frozen as viable cells. CD3/CD14/CD15/CD16/CD56-negative cells were later purified by magnetic cell separation. Targets were produced starting from 5 ug of total RNA following standard Affymetrix protocol.

source_name: Follicular lymphoma


title: FL-S


title: FL-DM


title: JRS4 1-2B

description: Total RNA was isolated by CsCl method, cDNA was labeled using CyScribe Post Lbeleing kit from Amersham.  Genomic DNA was labeled using Nick Translation kit from Amersham.  Labeled probes were purified with GFX columns and incorporation rates were determined using a nanodrop.  Approximately equal amounts of cDNA/gDNA were denatured and hybridized to arrays at 50C overnight followed by subsequent washes.  Arrays were scanned using GenePix software.  Output data (F635 mean -B635, F532 mean -B532, flags) from gpr file were analyzed to remove spots that did not exceed 2SD above a background threshold.  Remaining spots were normalized and ratios of cDNA to gDNA were calculated.

source_name: CsCl total RNA from M6 serotype GAS JRS4

source_name: genomic DNA from M6 serotype GAS JRS4


title: DLCL 00-3150

description: Diffuse large B cell lymphoma biopsy was digested and single cells suspension was frozen as viable cells. CD19 positive cells were later purified by magnetic cell separation. Targets were produced starting from 5 ug of total RNA following standard Affymetrix protocol.


title: D311


title: FL-C


title: D424


title: FL-GL


title: DLCL 99-209


title: D470


title: FL-AH


title: DLCL 98-322


title: Rho0-HeLa-Ctrl

city: Cleveland

first: Peter

middle: M

last: Chumakov

state: OH

address: 9500 Euclid Ave

department: Molecular Genetics

institute: Lerner Research Institute, The Cleveland Clinic Foundation

description:
To monitor gene expression profile following inhibition of novel nuclear single polypeptide RNA polymerase RNAP IV-sp (encoded in an alternative transcript from the POLRMT gene) we carried out hybridization of total RNA from mitochondrial DNA-deficient Rho0 HeLa cells with and without inhibition of POLRMT gene transcripts.  The Rho0 HeLa cells were infected with recombinant lentiviral vector pLSLG expressing short hairpin RNAi complementary to Exons 3 and 17 of the POLRMT gene.  48 hours after infection total RNA was isolated and analyzed for inhibition of POLRMT transcripts by RT-PCR.  Total RNA from Rho0 HeLa infected with empty pLSLG vector was used as control.  The two samples of RNA were used for microarray hybridization with Affymetrix human genome U133 2.0 plus microarray.
Lot batch =


title: DLCL 98-3607


title: DLCL 99-2325


title: BL 94-1925

description: Burkitt-like lymphoma biopsy was digested and single cells suspension was frozen as viable cells. CD3/CD14/CD56-negative cells were later purified by magnetic cell separation. Targets were produced starting from 5 ug of total RNA following standard Affymetrix protocol.

source_name: Burkitt lymphoma


title: DLCL 97-2470


title: P-CLLB8

description: CD19-positive cells purified by magnetic cell separation from peripheral blood of B cell chronic lymphocytic leukemia patients. The leukemic cells show mutated IgV. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol.

source_name: B cell chronic lymphocytic leukemia cells from peripheral blood


title: DLCL 99-203


title: Rho0-HeLa-siRNA-POLRMT

source_name: total RNA from Rho0 HeLa cells 48 hours after introduction of lentiviral vector expressing siRNA to POLRMT gene


title: BL 98-1463


title: P-CLLB13


title: P-CLLB10


title: BL 00-1470


title: P-CLLB9


title: P-CLL1297


title: P-CLLB7

description: CD19-positive cells purified by magnetic cell separation from peripheral blood of B cell chronic lymphocytic leukemia patients. The leukemic cells show unmutated IgV. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol.


title: P-CLLB15


title: P-CLLB6


title: P-CLLB14


title: P-CLL1291


title: P-CLL1302


title: P-CLLB4


title: Spleen vs TGF-beta (transforming growth factor-beta) Treated B cell 120min (set1).

city: Pasadena

first: Sangdun

last: Choi

address: 1200 E. California Blvd

department: Biology

institute: California Institute of Technology

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with TGF-beta (transforming growth factor-beta) for 120min

source_name: Spleen was labeled with Cyanine-3 (green).

source_name: TGF-beta (transforming growth factor-beta) Treated B cells were labeled with Cyanine-5 (red)


title: Spleen vs BAFF Treated B cell 60min (set3).

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with BAFF for 60min

source_name: BAFF Treated B cells were labeled with Cyanine-5 (red)


title: P-CLLB12


title: P-CLLB3


title: P-CLL1268


title: P-CLL1285


title: P-CLLB2


title: Spleen vs Neurokinin B (NEB) Treated B cell 120min. (set 2)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Neurokinin B (NEB) for 120min

source_name: Neurokinin B (NEB) Treated B cells were labeled with Cyanine-5 (red)


title: Spleen vs Neurokinin B (NEB) Treated B cell 30min. (set 2)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Neurokinin B (NEB) for 30min


title: P-CLL1263


title: Spleen vs Neurokinin B (NEB) Treated B cell 30min. (set 3)


title: Spleen vs Neurokinin B (NEB) Treated B cell 60min. (set 2)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Neurokinin B (NEB) for 60min


title: Spleen vs Neurokinin B (NEB) Treated B cell 240min. (set 1)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Neurokinin B (NEB) for 240min


title: sc9-B

first: Paola

last: Sebastiani

institute: Boston University

description: Cells Incubated with Sickle Cell Baseline Plasma

source_name: HPAEC


title: Spleen vs Neurokinin B (NEB) Treated B cell 60min. (set 3)


title: P-CLL1304


title: P-CLL1215


title: CLL1332

description: Mononucleated cells from peripheral blood of B cell chronic lymphocytic leukemia patients. The leukemic cells show mutated IgV. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol


title: Spleen vs Neurokinin B (NEB) Treated B cell 120min. (set 3)


title: Spleen vs Neurokinin B (NEB) Treated B cell 240min. (set 3)


title: CLL1272


title: sc8-B


title: Spleen vs Neurokinin B (NEB) Treated B cell 120min. (set 1)


title: sc7-B


title: CLL1270


title: CLL1259


title: sc9


title: CLL1255


title: Spleen vs Neurokinin B (NEB) Treated B cell 60min. (set 1)


title: sc5-B


title: Spleen vs Neurokinin B (NEB) Treated B cell 240min. (set 2)


title: Spleen vs Neurokinin B (NEB) Treated B cell 30min. (set 1)


title: CLL1310

description: Mononucleated cells from peripheral blood of B cell chronic lymphocytic leukemia patients. The leukemic cells show unmutated IgV. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol


title: CLL14

description: Mononucleated cells from peripheral blood of B cell chronic lymphocytic leukemia patients. The leukemic cells show unmutated IgV. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol.


title: sc8


title: sc3-B


title: sc7


title: CLL1275


title: sc6


title: SC2-B


title: sc4


title: CLL1282


title: sc4-B


title: sc5


title: Na-r1-B


title: CC 7-25

description: CD10-positive CD77-positive B-cells purified by magnetic cell separation. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol.

source_name: Germinal center centrocytes from tonsil


title: CC 7-7


title: CLL1333


title: sc6-B


title: CLL1208


title: 3a_PR9-B

description: Cells Incubated with ACS-pre    Patient Plasma


title: P-CLL1318


title: CC 4-6


title: CLL4


title: CLL1269


title: sc3


title: SC2 A


title: 3a_PR8-B


title: 3a_PR11-B


title: 3a_PR10_B


title: Na-r1


title: 3a_PR9

description: Cells Incubated with ACS-pre Patient Plasma


title: BL 93-49


title: 3a-r7-B


title: CC 3-28


title: 3a_PR8


title: M 5-2

description: CD27-positive CD10/CD38-negative B-cells purified by magnetic cell separation. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol

source_name: Memory B-cells from tonsil


title: CB 3-10

description: CD77-positive B-cells purified by magnetic cell separation. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol.

source_name: Germinal center centroblasts from tonsil


title: M 4-26


title: M 6-8


title: CC 4-14


title: CB 2-23


title: CB 3-30


title: 3a_PR10


title: 3a_PR11


title: N2 4-21

description: IgD-positive CD27/CD10/ CD38-negative B-cells purified by magnetic cell separation. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol.

source_name: Naïve B-cells from tonsil


title: CB 6-8


title: CB 3-7


title: M 4-14


title: 3a-r6-B


title: M 4-12


title: N1 4-21

description: IgD-positive CD27/CD10/ CD38-negative B-cells purified by magnetic cell separation. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol


title: 3a-r6


title: 3a-r7


title: N 4-7


title: 3a-r4-B


title: 3a-r3-B


title: 3a-r5-B


title: N 4-14


title: 3a-r1-B


title: 3a-r4


title: Cord 26-2

description: CD19-positive B-cells purified by magnetic cell separation from cord blood. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol.

source_name: Cord blood B-cells


title: 3a-r5


title: N 4-13


title: NC8-B

description: Cells Incubated with Normal Patient Plasma


title: 3a-r2-B


title: Cord 511


title: KIS-1

description: B cell line. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol.

source_name: KIS-1 cell ine


title: 3a-r3


title: Cord 512


title: 3a-r2


title: LCL-IARC304

description: EBV-immortalized lymphoblastoid cell line. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol.

source_name: IARC3043 cell line


title: NC7-B


title: BJAB-1

source_name: BJAB-1 cell line


title: NC9


title: LCL-RD

source_name: RD cell line


title: L428

description: Hodgkin lymphoma cell line. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol.

source_name: L428 cell line


title: LCL-Daikiki

source_name: Daikiki cell line


title: NC9-B


title: NC11-B


title: LCL-NC6

source_name: NC6 cell line


title: L1236

source_name: L1236 cell line


title: HDLM2

source_name: HDLM2 cell line


title: NC8


title: KMH2

source_name: KMH2 cell line


title: NC7


title: Ly4

description: Diffuse large B cell lymphoma cell line. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol

source_name: Ly4 cell line


title: 2a_r5-B

source_name: HPAEC


title: 2a_r6-B


title: Val

source_name: Val cell line


title: Ly7

source_name: Ly7 cell line


title: Ly10

source_name: Ly10 cell line


title: NC11


title: NC12


title: SudHL6

source_name: SudHL6 cell line


title: 2a_r3-B


title: Ly1

source_name: Ly1 cell line


title: ST486

description: Burkitt lymphoma cell line. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol

source_name: ST486 cell line


title: NC12-B


title: NC10


title: 2a_r6


title: Namalwa

source_name: Namalwa cell line


title: 2a-r2-b


title: EB3

source_name: EB3 cell line


title: 2a_r4


title: Ramos

source_name: Ramos cell line


title: DW6

source_name: DW6 cell line


title: BL74

source_name: BL74 cell line


title: 2a-r1-b


title: 2a_r4-B


title: 3a-r1


title: 3UT24h

description: Burkitt lymphoma cell line coltured for 24 h without stimuli. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol.


title: 2UT24h


title: 12aCD4O24h

description: Burkitt lymphoma cell line stimulated with anti-CD40 antibodies [5ug/ml] from G28-5 hybridomas for 24 h. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol.


title: 11aCD4O24h


title: 2a-r3


title: 10aCD4O24h


title: 2a-r1


title: LCL-CB33

source_name: CB33 cell line


title: 4UT24h


title: 1UT24h


title: Normal Fetal Lung

status: Public on Apr 03 2005

city: Evanston

first: Xijin

last: Ge

address: 1001 University Place

department: Center for Functional Genomics

institute: ENH Research Institute

description:
Normal human tissue:Normal Fetal Lung
Keywords = Human, Normal Tissue, Normal Fetal Lung

source_name: Normal Fetal Lung , Commercial mRNA for normal human tissue


title: P3HR1

city: New York

source_name: P3HR1 cell line


title: 2a_r2


title: 6UT24h


title: 5UT24h


title: Normal Liver

description:
Normal human tissue:Normal Liver
Keywords = Human, Normal Tissue, Normal Liver

source_name: Normal Liver , Commercial mRNA for normal human tissue


title: 2a_r5


title: Normal hippocampus

description:
Normal human tissue:Normal hippocampus
Keywords = Human, Normal Tissue, Normal hippocampus

source_name: Normal hippocampus , Commercial mRNA for normal human tissue


title: Normal Lung

description:
Normal human tissue:Normal Lung
Keywords = Human, Normal Tissue, Normal Lung

source_name: Normal Lung , Commercial mRNA for normal human tissue


title: Normal Corpus

description:
Normal human tissue:Normal Corpus
Keywords = Human, Normal Tissue, Normal Corpus

source_name: Normal Corpus , Commercial mRNA for normal human tissue


title: Normal Testis

description:
Normal human tissue:Normal Testis
Keywords = Human, Normal Tissue, Normal Testis

source_name: Normal Testis , Commercial mRNA for normal human tissue


title: Normal Thalamus

description:
Normal human tissue:Normal Thalamus
Keywords = Human, Normal Tissue, Normal Thalamus

source_name: Normal Thalamus , Commercial mRNA for normal human tissue


title: Normal Fetal Liver

description:
Normal human tissue:Normal Fetal Liver
Keywords = Human, Normal Tissue, Normal Fetal Liver

source_name: Normal Fetal Liver , Commercial mRNA for normal human tissue


title: Normal Caudate Nucleus

description:
Normal human tissue:Normal Caudate Nucleus
Keywords = Human, Normal Tissue, Normal Caudate Nucleus

source_name: Normal Caudate Nucleus, Commercial mRNA for normal human tissue


title: Normal Stomach

description:
Normal human tissue:Normal Stomach
Keywords = Human, Normal Tissue, Normal Stomach

source_name: Normal Stomach , Commercial mRNA for normal human tissue


title: Normal Fetal Brain

description:
Normal human tissue:Normal Fetal Brain
Keywords = Human, Normal Tissue, Normal Fetal Brain

source_name: Normal Fetal Brain , Commercial mRNA for normal human tissue


title: Normal Brain

description:
Normal human tissue:Normal Brain
Keywords = Human, Normal Tissue, Normal Brain

source_name: Normal Brain , Commercial mRNA for normal human tissue


title: Normal Spinal Cord

description:
Normal human tissue:Normal Spinal Cord
Keywords = Human, Normal Tissue, Normal Spinal Cord

source_name: Normal Spinal Cord , Commercial mRNA for normal human tissue


title: Normal Pituitary Gland

description:
Normal human tissue:Normal Pituitary Gland
Keywords = Human, Normal Tissue, Normal Pituitary Gland

source_name: Normal Pituitary Gland, Commercial mRNA for normal human tissue


title: Cells Incubated with Normal Patient Plasma

source_name: HPAEC


title: Normal Trachea

description:
Normal human tissue:Normal Trachea
Keywords = Human, Normal Tissue, Normal Trachea

source_name: Normal Trachea , Commercial mRNA for normal human tissue


title: Normal Salivary Gland

description:
Normal human tissue:Normal Salivary Gland
Keywords = Human, Normal Tissue, Normal Salivary Gland

source_name: Normal Salivary Gland, Commercial mRNA for normal human tissue


title: Normal Thyroid

description:
Normal human tissue:Normal Thyroid
Keywords = Human, Normal Tissue, Normal Thyroid

source_name: Normal Thyroid , Commercial mRNA for normal human tissue


title: Normal Amygdala

description:
Normal human tissue:Normal Amygdala
Keywords = Human, Normal Tissue, Normal Amygdala

source_name: Normal Amygdala , Commercial mRNA for normal human tissue


title: Normal Cerebellum

description:
Normal human tissue:Normal Cerebellum
Keywords = Human, Normal Tissue, Normal Cerebellum

source_name: Normal Cerebellum , Commercial mRNA for normal human tissue


title: Normal Uterus

description:
Normal human tissue:Normal Uterus
Keywords = Human, Normal Tissue, Normal Uterus

source_name: Normal Uterus , Commercial mRNA for normal human tissue


title: Normal Bladder

description:
Normal human tissue:Normal Bladder
Keywords = Human, Normal Tissue, Normal Bladder

source_name: Normal Bladder , Commercial mRNA for normal human tissue


title: Normal Small Intestine

description:
Normal human tissue:Normal Small Intestine
Keywords = Human, Normal Tissue, Normal Small Intestine

source_name: Normal Small Intestine , Commercial mRNA for normal human tissue


title: Normal Pancreas

description:
Normal human tissue:Normal Pancreas
Keywords = Human, Normal Tissue, Normal Pancreas

source_name: Normal Pancreas , Commercial mRNA for normal human tissue


title: Normal Ovary

description:
Normal human tissue:Normal Ovary
Keywords = Human, Normal Tissue, Normal Ovary

source_name: Normal Ovary , Commercial mRNA for normal human tissue


title: Normal Colon

description:
Normal human tissue:Normal Colon
Keywords = Human, Normal Tissue, Normal Colon

source_name: Normal Colon , Commercial mRNA for normal human tissue


title: Normal Heart

description:
Normal human tissue:Normal Heart
Keywords = Human, Normal Tissue, Normal Heart

source_name: Normal Heart , Commercial mRNA for normal human tissue


title: Normal Spleen

description:
Normal human tissue:Normal Spleen
Keywords = Human, Normal Tissue, Normal Spleen

source_name: Normal Spleen , Commercial mRNA for normal human tissue


title: 122-2

status: Public on Apr 01 2005

city: Cambridge

last: Hill

address: 300 Technology Square

department: Research Business Technology

institute: Pfizer

description:
Strain N2 (wild type) 122 minutes after the 4-cell embryonic stage at 22 degrees C
Sample_genotype: N2
Sample_time: 122

organism: Caenorhabditis elegans

source_name: Staged C. elegans embryos


title: Normal Skin

description:
Normal human tissue:Normal Skin
Keywords = Human, Normal Tissue, Normal Skin

source_name: Normal Skin , Commercial mRNA for normal human tissue


title: Normal Placenta

description:
Normal human tissue:Normal Placenta
Keywords = Human, Normal Tissue, Normal Placenta

source_name: Normal Placenta , Commercial mRNA for normal human tissue


title: p66-1

description:
Mutant genotype pie-1(zu154) 66 minutes after the 4-cell embryonic stage at 22 degrees C
Sample_genotype: pi
Sample_time: 66


title: Normal Bone Marrow

description:
Normal human tissue:Normal Bone Marrow
Keywords = Human, Normal Tissue, Normal Bone Marrow

source_name: Normal Bone Marrow , Commercial mRNA for normal human tissue


title: 186-4

description:
Strain N2 (wild type) 186 minutes after the 4-cell embryonic stage at 22 degrees C
Sample_genotype: N2
Sample_time: 186


title: 53-1

description:
Strain N2 (wild type) 53 minutes after the 4-cell embryonic stage at 22 degrees C
Sample_genotype: N2
Sample_time: 53


title: Normal Kidney

description:
Normal human tissue:Normal Kidney
Keywords = Human, Normal Tissue, Normal Kidney

source_name: Normal Kidney , Commercial mRNA for normal human tissue


title: 101H

description:
Strain N2 (wild type) 101 minutes after the 4-cell embryonic stage at 22 degrees C
Sample_genotype: N2
Sample_time: 101


title: 83-4

description:
Strain N2 (wild type) 83 minutes after the 4-cell embryonic stage at 22 degrees C
Sample_genotype: N2
Sample_time: 83


title: Normal Breast

description:
Normal human tissue:Normal Breast
Keywords = Human, Normal Tissue, Normal Breast

source_name: Normal Breast , Commercial mRNA for normal human tissue


title: 186-2


title: 186-1


title: 143Q

description:
Strain N2 (wild type) 143 minutes after the 4-cell embryonic stage at 22 degrees C
Sample_genotype: N2
Sample_time: 143


title: 143L


title: Normal Prostate

description:
Normal human tissue:Normal Prostate
Keywords = Human, Normal Tissue, Normal Prostate

source_name: Normal Prostate , Commercial mRNA for normal human tissue