title: Spleen vs CD40 Treated B cell 60min (set1)


title: Spleen vs CD27 Treated B cell 240min (set1)

status: Public on Apr 05 2003

type: RNA

city: Pasadena

first: Sangdun

last: Choi

state: CA

address: 1200 E. California Blvd

department: Biology

country: USA

institute: California Institute of Technology

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with CD27 for 240min

molecule: total RNA

organism: Mus musculus

source_name: Spleen was labeled with Cyanine-3 (green).

source_name: CD27 Treated B cells were labeled with Cyanine-5 (red)


title: Spleen vs CD40 Treated B cell 30min (set2)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with CD40 for 30min

source_name: CD40 Treated B cells were labeled with Cyanine-5 (red)


title: Spleen vs CD40 Treated B cell 30min (set3)


title: Spleen vs CD40 Treated B cell 240min (set2)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with CD40 for 240min


title: Spleen vs CD27 Treated B cell 60min (set2)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with CD27 for 60min


title: Spleen vs CD27 Treated B cell 60min (set3)


title: Spleen vs Dimaprit Treated B cell 120min (set1)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Dimaprit for 120min

source_name: Dimaprit Treated B cells were labeled with Cyanine-5 (red)


title: Spleen vs Bombesin Treated B cell 240min (set3)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Bombesin for 240min

source_name: Bombesin Treated B cells were labeled with Cyanine-5 (red)


title: Spleen vs Bombesin Treated B cell 120min (set2)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Bombesin for 120min


title: Spleen vs CD27 Treated B cell 30min (set2)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with CD27 for 30min


title: Spleen vs Bombesin Treated B cell 60min (set2)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Bombesin for 60min


title: Spleen vs Bombesin Treated B cell 240min (set2)


title: Spleen vs CD27 Treated B cell 30min (set1)


title: Spleen vs BLC Treated B cell 240min (set3)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with BLC for 240min

source_name: BLC Treated B cells were labeled with Cyanine-5 (red)


title: Spleen vs BLC Treated B cell 240min (set1)


title: Spleen vs BLC Treated B cell 120min (set2)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with BLC for 120min


title: Spleen vs Bombesin Treated B cell 60min (set3)


title: Spleen vs Bombesin Treated B cell 120min (set1)


title: Spleen vs BLC Treated B cell 120min (set1)


title: Spleen vs CD27 Treated B cell 60min (set1)


title: Spleen vs BLC Treated B cell 60min (set3)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with BLC for 60min


title: Spleen vs Bombesin Treated B cell 30min (set1)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Bombesin for 30min


title: Spleen vs Bombesin Treated B cell 30min (set2)


title: Spleen vs Bombesin Treated B cell 30min (set3)


title: Spleen vs BLC Treated B cell 60min (set2)


title: Spleen vs BLC Treated B cell 30min (set3)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with BLC for 30min


title: Spleen vs BLC Treated B cell 240min (set2)


title: Spleen vs CD27 Treated B cell 30min (set3)


title: Spleen vs BAFF Treated B cell 240min (set3)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with BAFF for 240min

source_name: BAFF Treated B cells were labeled with Cyanine-5 (red)


title: Spleen vs BAFF Treated B cell 240min (set2)


title: Spleen vs BAFF Treated B cell 240min (set1)


title: Spleen vs BLC Treated B cell 30min (set1)


title: Spleen vs BLC Treated B cell 30min (set2)


title: Spleen vs BLC Treated B cell 60min (set1)


title: Spleen vs Bombesin Treated B cell 240min (set1)


title: Spleen vs BAFF Treated B cell 120min (set1)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with BAFF for 120min


title: Spleen vs Anti-IgM Treated B cell 240min (set3)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Anti-IgM for 240min

source_name: Anti-IgM Treated B cells were labeled with Cyanine-5 (red)


title: Spleen vs Anti-IgM Treated B cell 240min (set2)


title: Spleen vs BAFF Treated B cell 30min (set1)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with BAFF for 30min


title: Spleen vs 2-Methyl-thio-ATP Treated B cell 240min (set2)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with 2-Methyl-thio-ATP for 240min

source_name: 2-Methyl-thio-ATP Treated B cells were labeled with Cyanine-5 (red)


title: Spleen vs BAFF Treated B cell 30min (set3)


title: Spleen vs Anti-IgM Treated B cell 120min (set2)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Anti-IgM for 120min


title: Spleen vs Anti-IgM Treated B cell 240min (set1)


title: Spleen vs BAFF Treated B cell 30min (set2)


title: Spleen vs Anti-IgM Treated B cell 30min (set3)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Anti-IgM for 30min


title: Spleen vs 2-Methyl-thio-ATP Treated B cell 60min (set2)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with 2-Methyl-thio-ATP for 60min


title: Spleen vs Anti-IgM Treated B cell 60min (set3)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Anti-IgM for 60min


title: Spleen vs 2-Methyl-thio-ATP Treated B cell 120min (set3)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with 2-Methyl-thio-ATP for 120min


title: Spleen vs BAFF Treated B cell 120min (set3)


title: Spleen vs BAFF Treated B cell 60min (set2)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with BAFF for 60min


title: Spleen vs BAFF Treated B cell 120min (set2)


title: Spleen vs BAFF Treated B cell 60min (set1)


title: Spleen vs Anti-IgM Treated B cell 120min (set1)


title: Spleen vs 2-Methyl-thio-ATP Treated B cell 120min (set1)


title: Spleen vs 2-Methyl-thio-ATP Treated B cell 120min (set2)


title: Spleen vs Anti-IgM Treated B cell 60min (set2)


title: Spleen vs Anti-IgM Treated B cell 60min (set1)


title: Spleen vs Anti-IgM Treated B cell 30min (set1)


title: Spleen vs Anti-IgM Treated B cell 120min (set3)


title: Spleen vs 2-Methyl-thio-ATP Treated B cell 240min (set1)


title: Spleen vs 2-Methyl-thio-ATP Treated B cell 240min (set3)


title: Spleen vs 2-Methyl-thio-ATP Treated B cell 60min (set1)


title: Spleen vs Bombesin Treated B cell 60min (set1)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Bombesin for 60min


title: LDLR_HF_3

city: Galveston

first: Allan

last: Brasier

state: TX

address: 301 Univ. Blvd

department: Medicine

institute: University Texas Medical Branch

description:
Diet induced changes in mouse liver mRNA profiles.
One of 3 replicates of LDL receptor deficient mice maintained for 12 weeks on high fat Western style diet.
Keywords = LDL receptor deficiency, high fat diet, atherosclerosis, liver

source_name: liver


title: LDLR_LF_3

description:
Diet induced changes in mouse liver mRNA profiles.
One of 3 replicates of LDL receptor deficient mice maintained for 12 weeks on low fat diet.
Keywords = LDL receptor deficiency, high fat diet, atherosclerosis, liver


title: C57_LF_3

description:
Diet induced changes in mouse liver mRNA profiles.
One of 3 replicates of C57BL/6 mice maintained for 12 weeks on low fat diet.
Keywords = LDL receptor deficiency, high fat diet, atherosclerosis, liver


title: LDLR_HF_1


title: LDLR_HF_2


title: C57_HF_3

description:
Diet induced changes in mouse liver mRNA profiles.
One of 3 replicates of C57BL/6 mice maintained for 12 weeks on a high fat Western style diet.
Keywords = LDL receptor deficiency, high fat diet, atherosclerosis, liver


title: C57_HF_2


title: Spleen vs 2-Methyl-thio-ATP Treated B cell 30min (set3)

description:
total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with 2-Methyl-thio-ATP for 30min


title: LDLR_LF_1


title: LDLR_LF_2


title: C57_LF_2


title: C57_LF_1


title: Spleen vs 2-Methyl-thio-ATP Treated B cell 30min (set1)


title: somatic embryos 28_2

status: Public on Apr 03 2003

city: Urbana

first: Lila

middle: O.

last: Vodkin

state: IL

address: 1201 W. Gregory Dr.

department: Crop Sciences

institute: University of Illinois

description:
Comparison of adaxial and abaxial sides of
4-6 mm cotyledons after 28 days on
40mg/L 2,4-D (replicate 2).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.
Keywords = somatic embryogenesis
Lot batch = 0012_D08

organism: Glycine max

source_name: 28-d adaxial

source_name: 28-d abaxial


title: B6-U133B

city: Rochester

first: Stephen

last: Welle

state: NY

address: 601 Elmwood Avenue

institute: University of Rochester

description: RNA extracted and samples processed as described in BMC Bioinformatics 3:23 (2002)

organism: Homo sapiens

source_name: vastus lateralis biopsy, 74 yr old healthy male


title: somatic embryos 21_21_1

description:
Comparison of two biological replicates of adaxial sides of 4-6 mm cotyledons after 21 days on 40mg/L 2,4-D.
Scanned with ScanArray Express 1.0.
Quantitated with GenePix 3.0.
Lot batch = 0014_A04

source_name: 21d adaxial replicate G

source_name: 21 d adaxial replicate F


title: B5-U133B

source_name: vastus lateralis biopsy, 67 yr old healthy male


title: B8-U133B

source_name: vastus lateralis biopsy, 75 yr old healthy male


title: somatic embryos 14_14_1

description:
Comparison of two different biological replicates of adaxial sides of 4-6 mm cotyledons after 14 days on 40mg/L 2,4-D. Scanned with ScanArray Express 1.0.
Quantitated with GenePix 3.0.

Lot batch = 0014_A02

source_name: 14d adaxial replication G

source_name: 14 d adaxial replication F


title: B7-U133B

source_name: vastus lateralis biopsy, 71 yr old healthy male


title: B4-U133B

source_name: Vastus lateralis biopsy, 73 yr old healthy male


title: Spleen vs 2-Methyl-thio-ATP Treated B cell 30min (set2)

source_name: Spleen was labeled with Cyanine-3 (green).


title: B2-U133B

source_name: Vastus lateralis biopsy, 69 yr old healthy male


title: somatic embryos 28_1

description:
Comparison of adaxial and abaxial sides of
4-6 mm cotyledons after 28 days on
40mg/L 2,4-D (replicate 1).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.
Keywords = somatic embryogenesis
Lot batch = 0012_E02

source_name: 28 d abaxial

source_name: 28 d adaxial


title: C57_HF_1


title: B3-U133B

source_name: vastus lateralis biopsy, 68 yr old healthy male


title: Spleen vs Anti-IgM Treated B cell 30min (set2)

source_name: Anti-IgM Treated B cells were labeled with Cyanine-5 (red)


title: somatic embryos 21_3

description:
Comparison of adaxial and abaxial sides of
4-6 mm cotyledons after 21 days on
40mg/L 2,4-D (replicate 3).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.
Keywords = somatic embryogenesis
Lot batch = 0012_B09

source_name: 21 d abaxial

source_name: 21 d adaxial


title: A8-U133B

source_name: vastus lateralis biopsy, 21 yr old healthy male


title: somatic embryos 14_3

description:
Comparison of adaxial and abaxial sides of
4-6 mm cotyledons after 14 days on
40mg/L 2,4-D (replicate 3).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.

Keywords = somatic embryogenesis
Lot batch = 0012_C02

source_name: 14 d abaxial

source_name: 14 d adaxial


title: somatic embryos 21_2

description:
Comparison of adaxial and abaxial sides of
4-6 mm cotyledons after 21 days on 40mg/L
2,4-D (replicate 2).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.
Keywords = somatic embryogenesis
Lot batch = 0012_C10


title: A7-U133B

source_name: vastus lateralis biopsy, 25 yr old healthy male


title: somatic embryos 28_3

description:
Comparison of adaxial and abaxial sides of
4-6 mm cotyledons after 28 days on
40mg/L 2,4-D (replicate 3).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.
Keywords = somatic embryogenesis
Lot batch = 0012_B10

source_name: 28-d adaxial

source_name: 28-d abaxial


title: A4-U133B

source_name: vastus lateralis biopsy, 26 yr old healthy male


title: A3-U133B

source_name: vastus lateralis biopsy, 24 yr old healthy male


title: somatic embryos 21_1

description:
Comparison of adaxial and abaxial sides of
4-6 mm cotyledons after 21 days on
40mg/L 2,4-D (replicate 1).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.
Keywords = somatic embryogenesis
Lot batch = 0012_E03


title: somatic embryos 14_2

description:
Comparison of adaxial and abaxial sides of
4-6 mm cotyledons after 14 days on
40mg/L 2,4-D (replicate 2).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.

Keywords = somatic embryogenesis
Lot batch = 0012_D04


title: A6-U133B

source_name: vastus lateralis biopsy, 23 yr old healthy male


title: somatic embryos 0_1

status: Public on Apr 02 2003

description:
Comparison of adaxial and abaxial sides of
4-6 mm cotyledons (replicate 1).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.
Keywords = somatic embryogenesis
Lot batch = 0012_C07

source_name: 0 d abaxial

source_name: 0 d adaxial


title: somatic embryos 7_2

description:
Comparison of adaxial and abaxial sides of
4-6 mm cotyledons after 7 days on
40mg/L 2,4-D (replicate 2).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.
Keywords = somatic embryogenesis
Lot batch = 0012_C09

source_name: 7 d adaxial

source_name: 7 d abaxial


title: somatic embryos 14_1

description:
Comparison of adaxial and abaxial sides of
4-6 mm cotyledons after 14 days on
40mg/L 2,4-D (replicate 1).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.
Keywords = somatic embryogenesis
Lot batch = 0012_D02


title: somatic embryos 21_14_2

description:
Comparison of adaxial sides of cotyledons after 14 and 21 days on 40mg/L 2,4-D (replicate 2).
Scanned with ScanArray Express 1.0
Quantitated with GenePix 3.0

Keywords = somatic embryogenesis
Lot batch = 0013_B10


title: somatic embryos 28_7_2

description:
Comparison of adaxial sides of cotyledons
after 7 and 28 days on 40mg/L 2,4-D
(replicate 2).
Scanned with ScanArray Express 1.0
Quantitated with GenePix 3.0
Keywords = somatic embryogenesis
Lot batch = 0013_C02

source_name: 28 d adaxial


title: A1-U133B


title: somatic embryos 7_3

description:
Comparison of adaxial and abaxial sides of
4-6 mm cotyledons after 7 days on
40mg/L 2,4-D (replicate 3).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.

Keywords = somatic embryogenesis
Lot batch = 0012_C01


title: somatic embryos 28_7_1

description:
Comparison of adaxial sides of cotyledons
after 7 and 28 days on 40mg/L 2,4-D
(replicate 1).
Scanned with ScanArray Express 1.0
Quantitated with GenePix 3.0
Keywords = somatic embryogenesis
Lot batch = 0013_B07


title: A2-U133B

description: RNA extracted and samples processed as described in BMC Bioinformatics 3:23 (2002)

source_name: vastus lateralis biopsy, 27 yr old healthy male


title: somatic embryos 0_2

description:
Comparison of adaxial and abaxial sides of
4-6 mm cotyledons (replicate 2).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.

Keywords = somatic embryogenesis
Lot batch = 0012_D05


title: somatic embryos 28_21_1

description:
Comparison of adaxial sides of cotyledons
after 21 and 28 days on 40mg/L 2,4-D
(replicate 1).
Scanned with ScanArray Express 1.0
Quantitated with GenePix 3.0
Keywords = somatic embryogenesis
Lot batch = 0013_B08


title: somatic embryos 21_14_1

description:
Comparison of adaxial sides of cotyledons after 14 and 21 days on 40mg/L 2,4-D (replicate 1).
Scanned with ScanArray Express 1.0.
Quantitated with GenePix 3.0.
Keywords = somatic embryogenesis
Lot batch = 0013_B06


title: somatic embryos 28_21_2

description:
Comparison of adaxial sides of cotyledons
after 21 and 28 days on 40mg/L 2,4-D
(replicate 2).
Scanned with ScanArray Express 1.0
Quantitated with GenePix 3.0

Keywords = somatic embryogenesis
Lot batch = 0013_C01


title: B1-U133B

source_name: vastus lateralis biopsy, 69 yr old healthy male


title: somatic embryos 14_7_1

description:
Comparison of adaxial tissue of cotyledons
after 7 d and 14 d and 40mg/L 2,4-D
(replicate 1).
Scanned with ScanArray Express 1.0
Quantitated with GenePix 3.0
Keywords = somatic embryogenesis
Lot batch = 0013_B05


title: EOM-adult rat-E1

city: Cleveland

first: Sangeeta

last: Khanna

state: OH

address: 11100 Euclid Avenue

department: Neurology

institute: Case Western Reserve University

description:
Replicate 1 for control rat adult extraocular muscle; raw data from RGU34A array using antibody scan.
Keywords = skeletal muscle, extraocular muscle, microarray

organism: Rattus norvegicus

source_name: rat extraocular muscle


title: B1-U133A

status: Public on Apr 01 2003


title: B5-U133A

source_name: vastus lateralis biopsy, 67 yr old healthy male


title: B8-U133A

source_name: vastus lateralis biopsy, 75 yr old healthy male


title: B2-U133A


title: somatic embryos 14_7_2

description:
Comparison of adaxial sides of cotyledons after 7 and 14 days on 40mg/L 2,4-D (replicate 2).
Scanned with ScanArray Express 1.0
Quantitated with GenePix 3.0
Keywords = somatic embryogenesis
Lot batch = 0013_B09

source_name: 14 d adaxial


title: B7-U133A

source_name: vastus lateralis biopsy, 71 yr old healthy male


title: B3-U133A

source_name: vastus lateralis biopsy, 68 yr old healthy male


title: NMC_Rat_5k_cDNA_Ser2-66

city: Trondheim

first: Fekadu

last: Yadetie

address: Olav Kyrres gt 3

department: Cancer Research and Molecular Medicine

country: Norway

institute: Norwegian University of Science and Technology

description: This represents hybridization of total liver RNA from one of four female Fischer rats given ciprofibrate (50 mg/kg body weight per day for 60 days) vs. total RNA pool from five control rats.

source_name: Liver from ciprofibrate dosed rat

source_name: Liver from control rats


title: NMC_Rat_5k_cDNA_Ser2-65


title: Vitamin A fed at age 35-days

status: Public on Mar 21 2003

city: New York

first: Fredric

middle: J.

last: Burns

address: 550 First Ave.

department: Environmental Medicine

institute: NYU School of Medicine

description: Pooled skins from Vitamin A fed rats at age 35-days.

source_name: pooled skins


title: 1 week after 9 Gy

description: Pooled rat skins at 1 week post 9 Gy electron irradiation.


title: A8-U133A

source_name: vastus lateralis biopsy, 21 yr old healthy male


title: B4-U133A

source_name: Vastus lateralis biopsy, 73 yr old healthy male


title: B6-U133A

source_name: vastus lateralis biopsy, 74 yr old healthy male


title: Vitamin A fed +1 week post 9 Gy

description: Pooled skins from rats on vitamin A supplement at 1 week post 9 Gy electron irradiation.


title: A2-U133A


title: Control 2 at age 35-day

description: Pooled skins of no-treatment rats at age 35 days.


title: A4-U133A

source_name: vastus lateralis biopsy, 26 yr old healthy male


title: A6-U133A

source_name: vastus lateralis biopsy, 23 yr old healthy male


title: A1-U133A

description:
RNA extracted and samples processed as described in BMC Bioinformatics 3:23 (2002)
Keywords = muscle, aging

source_name: vastus lateralis biopsy, 25 yr old healthy male


title: Control 1 at age 35-day

description: Pooled skin of no-treatment rats at 35 days of age.


title: Vitamin A +9 Gy

description: Pooled skins of Vitamin A fed rats at 24 hour after 9 Gy electron irradiation.

source_name: pooled  skins


title: A7-U133A


title: Vitamin A

description: Pooled skins of Vitamin A fed rats.


title: somatic embryos 7_1

description:
Comparison of adaxial and abaxial sides of
4-6 mm cotyledons after 7 days on
40mg/L 2,4-D (replicate 1).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.

Lot batch = 0012_D01

source_name: 7 d abaxial

source_name: 7 d adaxial


title: C18 Gy

description: Pooled skins at 24 hour after 18 Gy electron irradiation.


title: NMC_Rat_5k_cDNA_Ser2-61


title: A3-U133A

description: RNA extracted and samples processed as described in BMC Bioinformatics 3:23 (2002)

source_name: vastus lateralis biopsy, 24 yr old healthy male


title: 9 Gy at 1 day after radiation

description: 1 square centimeter from 4 different rats, full thickness skin.

source_name: pooled rat dorsal skins


title: 10W_3_19Dc02

status: Public on Mar 20 2003

city: Houston

first: Samuel

last: Kaplan

department: Microbiology and Molecular Genetics

institute: University of Texas Health Science Center at Houston

description:
Illumination with lumiline bulbs at 10W/m2
sparged with 95%N/5%CO2

organism: Cereibacter sphaeroides

source_name: R. sphaeroides 2.4.1


title: Control at 28 days of age

description: control skin, no treatment, 28 days of age,male rats, resting stage of hair growth

source_name: pooled 4 -1.0 square centimeter rat skin excisions


title: K562 versus reference v1 aRNA target 4

status: Public on Mar 18 2003

city: San Francisco

first: David

middle: J

last: Erle

institute: University of California San Francisco

description:
Targets made by a single round of T7 RNA polymerase-based amplification of starting material (total RNA).

K562 erythroleukemia cells (American Type Culture Collection CCL-243) were cultured in RPMI-1640 medium with L-glutamine supplemented with 10% fetal bovine serum, 100 IU/ml penicillin, and 100 microg/ml streptomycin. Cells were maintained at 37 deg C under 5% CO2/95% air in a humidified incubator.

Reference purchased from Stratagene. RNA pooled from 10 human cell lines:
Adenocarcinoma, mammary gland
Hepatoblastoma, liver
Adenocarcinoma, cervix
Embryonal carcinoma, testis
Glioblastoma, brain
Melanoma
Liposarcoma
Histiocytic lymphoma; macrophase; histocyte
Lymphoblastic leukemia
Plasmacytoma; myeloma; B lymphocyte

source_name: K562 erythroleukemia cells

source_name: Stratagene Universal Human Reference RNA


title: K562 versus reference v1 aRNA target (2 rounds) 2

description:
Targets made by two rounds of T7 RNA polymerase-based amplification of starting material (total RNA).

K562 erythroleukemia cells (American Type Culture Collection CCL-243) were cultured in RPMI-1640 medium with L-glutamine supplemented with 10% fetal bovine serum, 100 IU/ml penicillin, and 100 microg/ml streptomycin. Cells were maintained at 37 deg C under 5% CO2/95% air in a humidified incubator.

Reference purchased from Stratagene. RNA pooled from 10 human cell lines:
Adenocarcinoma, mammary gland
Hepatoblastoma, liver
Adenocarcinoma, cervix
Embryonal carcinoma, testis
Glioblastoma, brain
Melanoma
Liposarcoma
Histiocytic lymphoma; macrophase; histocyte
Lymphoblastic leukemia
Plasmacytoma; myeloma; B lymphocyte


title: K562 versus reference v2 cDNA target 4

description:
Targets made by synthesis of cDNA from total RNA (no amplification step).

K562 erythroleukemia cells (American Type Culture Collection CCL-243) were cultured in RPMI-1640 medium with L-glutamine supplemented with 10% fetal bovine serum, 100 IU/ml penicillin, and 100 microg/ml streptomycin. Cells were maintained at 37 deg C under 5% CO2/95% air in a humidified incubator.

Reference purchased from Stratagene. RNA pooled from 10 human cell lines:
Adenocarcinoma, mammary gland
Hepatoblastoma, liver
Adenocarcinoma, cervix
Embryonal carcinoma, testis
Glioblastoma, brain
Melanoma
Liposarcoma
Histiocytic lymphoma; macrophase; histocyte
Lymphoblastic leukemia
Plasmacytoma; myeloma; B lymphocyte


title: NMC_Rat_5k_cDNA_Ser2-63

description: This represents hybridization of total liver RNA from one of four female Fischer rats given ciprofibrate (50 mg/kg body weight per day for 60 days) vs. total RNA pool from five control rats.

source_name: Liver from ciprofibrate dosed rat

source_name: Liver from control rats


title: K562 versus reference v1 aRNA target 2


title: K562 versus reference v2 cDNA target 2


title: K562 versus reference v1 aRNA target 1


title: K562 versus reference v1 cDNA target 5


title: K562 versus reference v1 cDNA target 6


title: K562 versus reference v2 cDNA target 3


title: K562 versus reference v2 cDNA target 1


title: K562 versus reference v1 aRNA target 5


title: K562 versus reference v1 aRNA target 3


title: K562 versus reference v1 aRNA target 6


title: K562 versus reference v1 cDNA target 3


title: K562 versus reference v1 aRNA target (2 rounds) 1


title: K562 versus reference v1 cDNA target 1

description:
Targets made by synthesis of cDNA from total RNA (no amplification step).
K562 erythroleukemia cells (American Type Culture Collection CCL-243) were cultured in RPMI-1640 medium with L-glutamine supplemented with 10% fetal bovine serum, 100 IU/ml penicillin, and 100 microg/ml streptomycin. Cells were maintained at 37 deg C under 5% CO2/95% air in a humidified incubator.
Reference purchased from Stratagene. RNA pooled from 10 human cell lines.
Adenocarcinoma, mammary gland; Hepatoblastoma, liver; Adenocarcinoma, cervix;  Embryonal carcinoma, testis; Glioblastoma, brain; Melanoma; Liposarcoma; Histiocytic lymphoma; macrophase; histocyte; Lymphoblastic leukemia.


title: K562 versus reference v1 cDNA target 2


title: K562 versus reference v1 cDNA target 4


title: RRE2_TY2_00_60_2

status: Public on Mar 16 2003

city: Irvine

first: Michael

last: McClelland

address: 132 Med Surge I

department: Microbiology & Molecular Genetics

institute: University of California, Irvine

description:
Salmonella enterica subsp. enterica serovar Typhi strain Ty2.
Cells response to stimuli.
Keywords = Salmonella

source_name: experiment

source_name: control


title: RRE2_TY2_00_60_4

organism: Salmonella enterica subsp. enterica serovar Typhi


title: RRE2_TY2_30_2


title: RRE2_TY2_00_60_5


title: RRE2_TY2_00_60_1


title: RRE2_TY2_00_10_6


title: RRE2_TY2_00_30_5


title: RRE2_TY2_00_60_1b


title: RRE2_TY2_00_5_5

description:
Salmonella enterica subsp. enterica serovar Typhi strain Ty2
Cells response to stimuli.
Keywords = Salmonella


title: RRE2_TY2_00_60_3


title: RRE2_TY2_00_10_2


title: RRE2_TY2_00_30_3


title: RRE2_TY2_00_5_2

description:
Salmonella enterica subsp. enterica serovar Typhi strain Ty2.
Cells exposed to stimulus.
Keywords = Salmonella
Lot batch = experiment1


title: RRE2_TY2_00_5_4


title: RRE2_TY2_00_10_4

source_name: cnotrol


title: RRE2_TY2_00

description:
Salmonella enterica subsp. enterica serovar Typhi strain Ty2.
Cells exposed to external stimulus.
Keywords = Salmonella
Lot batch = experiment1


title: RRE2_TY2_00_60_6


title: GC2_LT2_log_on_6

type: genomic

description:
slide 2D454-03
Keywords = Salmonella

molecule: genomic DNA

organism: Salmonella enterica

source_name: Typhimurium LT2 OD=0.4

source_name: Typhimurium LT2 overnight


title: GC2_LT2_log_on_5

description:
slide 2D454-02
Keywords = Salmonella


title: RRE2_TY2_00_5_6


title: RRE2_TY2_00_5_3


title: RRE2_TY2_00_30_4


title: RRE2_TY2_00_10_5


title: GC2_LT2_log_on_3

description:
slide 2D448-03
Keywords = Salmonella


title: GC2_LT2_log_on_2

description:
slide 2D448-02
Keywords = Salmonella


title: RRE2_TY2_00_30_1


title: AMY, Saline-treated control

status: Public on Mar 13 2003

city: Pittsburgh

first: Rajan

last: Munshi

state: PA

address: W1041 Biomedical Science Tower, 200 Lothrop Street

department: Center for Computational Biology and Bioinformatics

institute: University of Pittsburgh School of Medicine

description:
This represents the expression index obtained by dChip for the saline-treated AMY brain region (see GEO Accession GSE340 for experimental outline).
Keywords = amy, control

source_name: Rat Brain, Amygdala


title: PFC, Saline-treated control

description:
This represents the expression index obtained by dChip for the saline-treated PFC brain region (see GEO Accession GSE340 for experimental outline).
Keywords = pfc, control

source_name: Rat Brain, Prefrontal Cortex


title: CPU, Saline-treated control

description:
This represents the expression index obtained by dChip for the saline-treated CPU brain region (see GEO Accession GSE340 for experimental outline).
Keywords = cpu, control

source_name: Rat Brain, Caudate Putamen


title: CPU, Cocaine-treated

description:
This represents the expression index obtained by dChip for the cocaine-treated CPU brain region (see GEO Accession GSE340 for experimental outline).
Keywords = cpu, cocaine


title: PFC, Cocaine-treated

description:
This represents the expression index obtained by dChip for the cocaine-treated PFC brain region (see GEO Accession GSE340 for experimental outline).
Keywords = pfc, cocaine


title: NA, Cocaine-treated

description:
This represents the expression index obtained by dChip for the cocaine-treated NA brain region (see GEO Accession GSE340 for experimental outline).
Keywords = na, cocaine

source_name: Rat Brain, Nucleus Accumbens


title: RRE2_TY2_00-10_1


title: VTA, Cocaine-treated

description:
This represents the expression index obtained by dChip for the cocaine-treated VTA brain region (see GEO Accession GSE340 for experimental outline).
Keywords = vta, cocaine

source_name: Rat Brain, Ventral Tegmental Area


title: GC2_CT18_LT2_4

description:
slide 2D446-01
Keywords = Salmonella

source_name: Typhi CT18 overnight


title: VTA, Saline-treated control

description:
This represents the expression index obtained by dChip for the saline-treated VTA brain region (see GEO Accession GSE340 for experimental outline).
Keywords = vta, control


title: NA, Saline-treated control

description:
This represents the expression index obtained by dChip for the saline-treated NA brain region (see GEO Accession GSE340 for experimental outline).
Keywords = na, control


title: RRE2_TY2_00_10_3


title: AMY, Cocaine-treated

description:
This represents the expression index obtained by dChip for the cocaine-treated AMY brain region (see GEO Accession GSE340 for experimental outline).
Keywords = amy, cocaine


title: G_1

status: Public on Mar 11 2003

city: Laramie

first: Mark

last: Gomelsky

state: WY

department: Molecular Biology

institute: University of Wyoming

description: Aerobic conditions (30% oxygen). Bead-beater 2x DNAse.

source_name: University of Wyoming


title: G_5


title: Neutrophil LPS - repB

status: Public on Mar 09 2003

city: Denver

first: K

middle: C

last: Malcolm

state: CO

department: Department of Medicine

institute: National Jewish Medical and Research Center

description: VALUES are fluorescence ratios (LPS-stimulated/non-stimulated)

source_name: LPS-stimluated (Cy3) 4 hours

source_name: non-stimulated (Cy5)


title: GC2_LT2_log_on_4

description:
slide 2D454-01
Keywords = Salmonella


title: GC2_CT18_log_on_3

description:
slide 2D489-03
Keywords = Salmonella

source_name: Typhi CT18 OD=0.25


title: GC2_CT18_log_on_2

description:
slide 2D489-02
Keywords = Salmonella


title: GC2_CT18_log_on_6

description:
slide 2D490-03
Keywords = Salmonella


title: GC2_LT2_log_on_1

description:
slide 2D448-01
Keywords = Salmonella


title: GC2_CT18_LT2_6

description:
slide 2D446-03
Keywords = Salmonella


title: GC2_CT18_log_on_4

description:
slide 2D490-01
Keywords = Salmonella


title: GC2_CT18_log_on_1

description:
slide 2D489-01
Keywords = Salmonella


title: LPS-stimulated PMN #1 - repA

description: VALUES are ratio of Cy3/Cy5 (LPS/NS)

source_name: LPS-stimulated (Cy3)


title: LPS-stimulated PMN - repA

description: VALUES are ratios of LPS-stimulated/non-stimulated

source_name: LPS-stimulated (Cy3) 4 hours


title: Neutrophil LPS - repA


title: LPS-stimulated PMN #1 - repB

description: VALUES are ratio of Cy3/Cy5 (LPS/NS)


title: GC2_CT18_LT2_3

description:
slide 2D444-03
Keywords = Salmonella


title: GC2_CT18_LT2_2

description:
slide 2D444-02
Keywords = Salmonella


title: GC2_CT18_LT2_1

description:
slide 2D444-01
Keywords = Salmonella


title: Spleen 1

status: Public on Mar 06 2003

description: Spleen total RNA (Catalog #64044-1) was purchased from Clontech and used as the starting material.

source_name: spleen


title: 3rd UMRR vs Spleen

description:
UMRR (Catalog #740100) was purchased from Stratagene and used as the starting material. cRNA was made by the single round amplification method.
Spleen total RNA (Catalog #64044-1) was purchased from Clontech and used as the starting material. cRNA was made by the single round amplification method.

source_name: UMRR (Universal Mouse Reference RNA) was labeled with Cyanine-3 (green).

source_name: Spleen was labeled with Cyanine-5 (red)


title: GC2_CT18_log_on_5

description:
slide 2D490-02
Keywords = Salmonella


title: 3rd Spleen vs Liver - cDNA

description:
Spleen total RNA (Catalog #64044-1) was purchased from Clontech and used as the starting material. cRNA was made by the single round amplification method.
Liver total RNA (Catalog #64042-1) was purchased from Clontech and used as the starting material. cRNA was made by the single round amplification method.

source_name: Spleen was labeled with Cyanine-3 (green).

source_name: Liver was labeled with Cyanine-5 (red)


title: 3rd UMRR vs Liver

description:
UMRR (Catalog #740100) was purchased from Stratagene and used as the starting material. cRNA was made by the single round amplification method.
Liver total RNA (Catalog #64042-1) was purchased from Clontech and used as the starting material. cRNA was made by the single round amplification method.


title: Liver 1

description: Liver total RNA (Catalog #64042-1) was purchased from Clontech and used as the starting material.


title: 1st UMRR vs Liver


title: 2nd Spleen vs Liver - cDNA


title: Spleen 2


title: Liver 2


title: 2nd UMRR vs Spleen


title: 3rd D-Spleen vs D-Liver

description:
Spleen total RNA (Catalog #64044-1) was purchased from Clontech and used as the starting material. cRNA was made by the double round amplification method.
Liver total RNA (Catalog #64042-1) was purchased from Clontech and used as the starting material. cRNA was made by the double round amplification method.


title: 1st Spleen vs Liver - Oligo


title: 2nd UMRR vs Liver


title: 2hr MK-DG vs 2hr MK C+S-DG

status: Public on Feb 28 2003

description:
MK: MK-801. Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). RNA from control mice were extracted 2hr after MK experimental mice received their last shock treatment.
MK C+S: MK-801 & Context + Shock: Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight) 1hr prior to contextual fear conditioning that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals were removed to their homecage. RNA was extracted 2hr after the last shock treatment.

source_name: DG Hippocampus, 2hr MK-DG was labeled with Cyanine-3 (green).

source_name: DG Hippocampus, 2hr MK C+S-DG was labeled with Cyanine-5 (red)


title: 1st UMRR vs Spleen


title: 2nd Spleen vs Liver - Oligo


title: GC2_CT18_LT2_5

description:
slide 2D446-02
Keywords = Salmonella

source_name: Typhimurium LT2 overnight


title: 3rd Spleen vs Liver - Oligo


title: 1st Spleen vs Liver - cDNA


title: 1st D-Spleen vs D-Liver


title: 2nd D-Spleen vs D-Liver


title: 6hr Sal-CA1 vs 6hr MK-CA1

status: Public on Feb 27 2003

description:
Sal: Saline. Young male C57BL/6J mice received an injection of saline (5 microL per g body weight). RNA from control mice were extracted 6hr after MK experimental mice received their last shock treatment.
MK: MK-801. Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). RNA from control mice were extracted 6hr after MK experimental mice received their last shock treatment.

source_name: CA1 Hippocampus, 6hr Sal-CA1 was labeled with Cyanine-3 (green).

source_name: CA1 Hippocampus, 6hr MK-CA1 was labeled with Cyanine-5 (red)


title: LPS-stimulated PMN - repB


title: 6hr Sal-DG vs 6hr MK-DG

source_name: DG Hippocampus, 6hr Sal-DG was labeled with Cyanine-3 (green).

source_name: DG Hippocampus, 6hr MK-DG was labeled with Cyanine-5 (red)


title: 6hr MK-DG vs 6hr MK C+S-DG

description:
MK: MK-801. Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). RNA from control mice were extracted 6hr after MK experimental mice received their last shock treatment.
MK C+S: MK-801 & Context + Shock: Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight) 1hr prior to contextual fear conditioning that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals were removed to their homecage. RNA was extracted 6hr after the last shock treatment.

source_name: DG Hippocampus, 6hr MK-DG was labeled with Cyanine-3 (green).

source_name: DG Hippocampus, 6hr MK C+S-DG was labeled with Cyanine-5 (red)


title: 4hr Sal-DG vs 4hr MK-DG

description:
Sal: Saline. Young male C57BL/6J mice received an injection of saline (5 microL per g body weight). RNA from control mice were extracted 4hr after MK experimental mice received their last shock treatment.
MK: MK-801. Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). RNA from control mice were extracted 4hr after MK experimental mice received their last shock treatment.

source_name: DG Hippocampus, 4hr Sal-DG was labeled with Cyanine-3 (green).

source_name: DG Hippocampus, 4hr MK-DG was labeled with Cyanine-5 (red)


title: 4hr Sal-CA1 vs 4hr MK-CA1

source_name: CA1 Hippocampus, 4hr Sal-CA1 was labeled with Cyanine-3 (green).

source_name: CA1 Hippocampus, 4hr MK-CA1 was labeled with Cyanine-5 (red)


title: 6hr MK-CA1 vs 6hr MK C+S-CA1

source_name: CA1 Hippocampus, 6hr MK-CA1 was labeled with Cyanine-3 (green).

source_name: CA1 Hippocampus, 6hr MK C+S-CA1 was labeled with Cyanine-5 (red)


title: MK 2hr S-CA1

status: Public on Feb 25 2003

description: MK S: MK Shock Alone: Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). Animals were placed into the novel context 2 hours prior to receiving the training paradigm that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals remained in the training chamber for 1 hour after the last shock. RNA was extracted was extracted 2 hours after the last shock treatment.

source_name: CA1 Hippocampus


title: MK 2hr C-CA1

description: MK C: MK control. Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). No other treatment administered. RNA from control mice were extracted 2 hours after experimental mice received their last shock treatment.


title: 2hr Sal-DG vs 2hr MK-DG

description:
Sal: Saline. Young male C57BL/6J mice received an injection of saline (5 microL per g body weight). RNA from control mice were extracted 2hr after MK experimental mice received their last shock treatment.
MK: MK-801. Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). RNA from control mice were extracted 2hr after MK experimental mice received their last shock treatment.

source_name: DG Hippocampus, 2hr Sal-DG was labeled with Cyanine-3 (green).

source_name: DG Hippocampus, 2hr MK-DG was labeled with Cyanine-5 (red)


title: 2hr Sal-CA1 vs 2hr MK-CA1

source_name: CA1 Hippocampus, 2hr Sal-CA1 was labeled with Cyanine-3 (green).

source_name: CA1 Hippocampus, 2hr MK-CA1 was labeled with Cyanine-5 (red)


title: 4hr MK-CA1 vs 4hr MK C+S-CA1

description:
MK: MK-801. Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). RNA from control mice were extracted 4hr after MK experimental mice received their last shock treatment.
MK C+S: MK-801 & Context + Shock: Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight) 1hr prior to contextual fear conditioning that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals were removed to their homecage. RNA was extracted 4hr after the last shock treatment.

source_name: CA1 Hippocampus, 4hr MK-CA1 was labeled with Cyanine-3 (green).

source_name: CA1 Hippocampus, 4hr MK C+S-CA1 was labeled with Cyanine-5 (red)


title: 1hr MK-CA1 vs 1hr MK C+S-CA1

description:
MK: MK-801. Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). RNA from control mice were extracted 1hr after MK experimental mice received their last shock treatment.
MK C+S: MK-801 & Context + Shock: Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight) 1hr prior to contextual fear conditioning that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals were removed to their homecage. RNA was extracted 1hr after the last shock treatment.

source_name: CA1 Hippocampus, 1hr MK-CA1 was labeled with Cyanine-3 (green).

source_name: CA1 Hippocampus, 1hr MK C+S-CA1 was labeled with Cyanine-5 (red)


title: 1hr Sal-CA1 vs 1hr MK-CA1

description:
Sal: Saline. Young male C57BL/6J mice received an injection of saline (5 microL per g body weight). RNA from control mice were extracted 1hr after MK experimental mice received their last shock treatment.
MK: MK-801. Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). RNA from control mice were extracted 1hr after MK experimental mice received their last shock treatment.

source_name: CA1 Hippocampus, 1hr Sal-CA1 was labeled with Cyanine-3 (green).

source_name: CA1 Hippocampus, 1hr MK-CA1 was labeled with Cyanine-5 (red)


title: AD 2hr C-CA1

description: AD C: Alzheimer's control. Alzheimer's mice were 50% C57BL/6, 50% SJL. Alzheimers animals were the double transgenic models reported by Dineley et al., (2002) J Biol Chem 277(25):22768-22780. Mice were handled by experimenter. No other treatment administered. RNA from control AD mice were extracted 2 hours after AD experimental mice received their last shock treatment.


title: 1hr Sal-DG vs 1hr MK-DG

source_name: DG Hippocampus, 1hr Sal-DG was labeled with Cyanine-3 (green).

source_name: DG Hippocampus, 1hr MK-DG was labeled with Cyanine-5 (red)


title: MK 2hr S-DG

source_name: Dentate Gyrus Hippocampus


title: AD 2hr C-DG


title: MK 2hr C-DG


title: AD 2hr C+S-DG

description: AD C+S: Alzheimer's context + shock: Alzheimer's mice were 50% C57BL/6, 50% SJL. Alzheimers animals were the double transgenic models reported by Dineley et al., (2002) J Biol Chem 277(25):22768-22780. Alzheimer's mice were exposed to a contextual fear conditioning paradigm that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals were removed to their homecage. RNA was extracted was extracted 2 hours after the last shock treatment.


title: AD 2hr C+S-CA1


title: 6hr S-CA1

description: S: Shock alone. Young male C57BL/6J mice were placed into the novel context 2 hours prior to receiving the training paradigm that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals remained in the training chamber for 1 hour after the last shock. RNA was extracted was extracted 6 hour after the last shock treatment.


title: 2hr S-DG

description: S: Shock alone. Young male C57BL/6J mice were placed into the novel context 2 hours prior to receiving the training paradigm that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals remained in the training chamber for 1 hour after the last shock. RNA was extracted was extracted 2 hour after the last shock treatment.


title: 1hr S-DG

description: S: Shock alone. Young male C57BL/6J mice were placed into the novel context 2 hours prior to receiving the training paradigm that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals remained in the training chamber for 1 hour after the last shock. RNA was extracted was extracted 1 hour after the last shock treatment.


title: 4hr S-DG

description: S: Shock alone. Young male C57BL/6J mice were placed into the novel context 2 hours prior to receiving the training paradigm that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals remained in the training chamber for 1 hour after the last shock. RNA was extracted was extracted 4 hour after the last shock treatment.


title: 4hr MK-DG vs 4hr MK C+S-DG

source_name: DG Hippocampus, 4hr MK-DG was labeled with Cyanine-3 (green).

source_name: DG Hippocampus, 4hr MK C+S-DG was labeled with Cyanine-5 (red)


title: 4hr S-CA1


title: 2hr MK-CA1 vs 2hr MK C+S-CA1

source_name: CA1 Hippocampus, 2hr MK-CA1 was labeled with Cyanine-3 (green).

source_name: CA1 Hippocampus, 2hr MK C+S-CA1 was labeled with Cyanine-5 (red)


title: 6hr S-DG


title: 1hr MK-DG vs 1hr MK C+S-DG

source_name: DG Hippocampus, 1hr MK-DG was labeled with Cyanine-3 (green).

source_name: DG Hippocampus, 1hr MK C+S-DG was labeled with Cyanine-5 (red)


title: 3rd 2hr C+S-DG

description: C + S: Context + Shock. Young male C57BL/6J mice were exposed to a contextual fear conditioning paradigm that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals were removed to their homecage. RNA was extracted was extracted 2 hour after the last shock treatment.


title: 3rd 1hr C+S-DG

description: C + S: Context + Shock. Young male C57BL/6J mice were exposed to a contextual fear conditioning paradigm that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals were removed to their homecage. RNA was extracted was extracted 1 hour after the last shock treatment.


title: 2hr S-CA1

source_name: CA1 Hippocampus


title: 2nd 6hr C+S-DG

description: C + S: Context + Shock. Young male C57BL/6J mice were exposed to a contextual fear conditioning paradigm that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals were removed to their homecage. RNA was extracted was extracted 6 hour after the last shock treatment.


title: 3rd 6hr C+S-DG


title: 1hr S-CA1


title: 3rd 4hr C+S-DG

description: C + S: Context + Shock. Young male C57BL/6J mice were exposed to a contextual fear conditioning paradigm that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals were removed to their homecage. RNA was extracted was extracted 4 hour after the last shock treatment.


title: 2nd 2hr C+S-DG


title: 2nd 4hr C+S-DG


title: 2nd 6hr C+S-CA1


title: 3rd 2hr C+S-CA1


title: 3rd 6hr C-DG

description: C: Control. Young male C57BL/6J mice were handled by experimenter. No other treatment administered. RNA from control mice were extracted 6hr after experimental mice received their last shock treatment.


title: 3rd 1hr C+S-CA1


title: 1st 2hr C+S-DG


title: 1st 4hr C+S-DG


title: 1st 6hr C+S-DG


title: 3rd 6hr C+S-CA1


title: 2nd 1hr C+S-DG


title: 1st 2hr C+S-CA1


title: 3rd 4hr C+S-CA1


title: 2nd 1hr C+S-CA1


title: 3rd 4hr C-DG

description: C: Control. Young male C57BL/6J mice were handled by experimenter. No other treatment administered. RNA from control mice were extracted 4hr after experimental mice received their last shock treatment.


title: 1st 1hr C+S-DG


title: 3rd 2hr C-DG

description: C: Control. Young male C57BL/6J mice were handled by experimenter. No other treatment administered. RNA from control mice were extracted 2hr after experimental mice received their last shock treatment.


title: 2nd 4hr C+S-CA1


title: 2nd 2hr C+S-CA1


title: 1st 4hr C+S-CA1


title: 1st 6hr C-DG


title: 3rd 1hr C-DG

description: C: Control. Young male C57BL/6J mice were handled by experimenter. No other treatment administered. RNA from control mice were extracted 1hr after experimental mice received their last shock treatment.


title: 2nd 2hr C-DG


title: 2nd 4hr C-DG


title: 2nd 1hr C-DG


title: 2nd 6hr C-DG


title: 1st 4hr C-DG


title: 1st 1hr C-DG


title: 1st 6hr C+S-CA1


title: S64_EC_JYK

status: Public on Feb 18 2003

city: Palo Alto

first: Jennifer

last: King

department: Cardiovascular Medicine

institute: Stanford University

description: Sample: human aortic endothelial cells

source_name: HAEC

source_name: HUVEC


title: S66_EC_JYK

description: Sample: human coronary artery endothelial cells

source_name: HCAEC


title: S65_EC_JYK


title: S63_EC_JYK

description: Sample: human aortic endothelial cells


title: S61_EC_JYK


title: 3rd 4hr C-CA1


title: 3rd 2hr C-CA1


title: 2nd 6hr C-CA1


title: 1st 1hr C+S-CA1


title: 2nd 4hr C-CA1


title: 1st 4hr C-CA1


title: 3rd 6hr C-CA1


title: 3rd 1hr C-CA1


title: 1st 6hr C-CA1


title: 1st 2hr C-DG


title: 2nd 1hr C-CA1


title: S62_EC_JYK


title: 1st 1hr C-CA1


title: S60_EC_JYK

description: Sample: human aortic endothelial cells


title: 2nd 2hr C-CA1


title: S58_EC_JYK

description: Sample: human umbilical vein endothelial cells


title: S54_EC_JYK

description: Sample: human aortic endothelial cells


title: S57_EC_JYK


title: S56_EC_JYK


title: S59_EC_JYK

description: Sample: human aortic endothelial cells


title: S53_EC_JYK

description: Sample: human aortic endothelial cells


title: S52_EC_JYK

description: Sample: normal human epidermal keratinocytes

source_name: NHEK


title: S55_EC_JYK


title: S50_EC_JYK


title: S51_EC_JYK


title: S48_EC_JYK


title: S47_EC_JYK


title: S46_EC_JYK

description: Sample: human hepatocellular carcinoma cell line


title: S49_EC_JYK


title: S38_EC_JYK

description: Sample: normal human astrocytes

source_name: NHA


title: S39_EC_JYK

description: Sample: normal human astrocytes


title: S35_EC_JYK

description: Sample: normal human astrocytes


title: S44_EC_JYK


title: S34_EC_JYK

description: Sample: normal human astrocytes


title: S40_EC_JYK

description: Sample: normal human astrocytes


title: S37_EC_JYK

description: Sample: normal human astrocytes


title: S43_EC_JYK


title: S45_EC_JYK


title: S33_EC_JYK

description: Sample: normal human astrocytes


title: S42_EC_JYK


title: S32_EC_JYK

description: Sample: human aortic smooth muscle cells

source_name: HASMC


title: S41_EC_JYK


title: S29_EC_JYK


title: S30_EC_JYK


title: S28_EC_JYK


title: S31_EC_JYK


title: S27_EC_JYK


title: S26_EC_JYK


title: S24_EC_JYK

description: Sample: human mammary epithelial cells

source_name: HMEC


title: S25_EC_JYK


title: S23_EC_JYK

description: Sample: human mammary epithelial cells


title: 1st 2hr C-CA1


title: S20_EC_JYK

description: Sample: human mammary epithelial cells


title: S21_EC_JYK

description: Sample: human mammary epithelial cells


title: S22_EC_JYK

description: Sample: human mammary epithelial cells


title: S19_EC_JYK

description: Sample: human mammary epithelial cells


title: S17_EC_JYK

description: Sample: human mammary epithelial cells


title: S18_EC_JYK

description: Sample: human mammary epithelial cells


title: S15_EC_JYK

description: Sample: human lung microvascular endothelial cells

source_name: HMVEC


title: S11_EC_JYK


title: S9_EC_JYK


title: S10_EC_JYK


title: S12_EC_JYK


title: S8_EC_JYK


title: S6_EC_JYK


title: S7_EC_JYK


title: S13_EC_JYK


title: S16_EC_JYK


title: S1_EC_JYK


title: S14_EC_JYK


title: S4_EC_JYK


title: S5_EC_JYK


title: S3_EC_JYK


title: S2_EC_JYK


title: Reference vs. Reference (1)

status: Public on Feb 07 2003

city: East Lansing

first: Steven

middle: Paul

last: Suchyta

state: MI

address: B215 Anthony Hall

department: Animal Science

institute: Michigan State University

description:
Determing the false-postive rate on the BMAM microarray. (GAPDH was not added to the BMAM microarray for this experiment)
Keywords = false positive, EST, microarray, mammary, bovine, cDNA

organism: Bos taurus

source_name: BovMav cell line


title: Bovine adrenal tissue vs. reference

description:
Comparing bovine adrenal tissue versus a reference on the BMAM microarray.
Keywords = microarray, adrenal, EST, cDNA, mammary

source_name: BovMac cell line

source_name: bovine adrenal tissue


title: Bovine pre-pubertal mammary gland vs. reference

description:
Comparing bovine pre-pubertal mammary gland versus a reference on the BMAM microarray.
Keywords = pre-pubertal, mammary, cDNA, EST, microarray, bovine

source_name: bovine pre-pubertal mammary gland (136kg. Holstein heifer)


title: S12

status: Public on Feb 06 2003

city: Campinas

first: Fábio

middle: Tebaldi

last: Nogueira

department: CBMEG

country: Brazil

institute: Institute of Biology

description: 48 h after cold treatment

organism: Saccharum sp.

source_name: leaves from sugarcane plantlets


title: Pre-pubertal mammary gland vs. post-pubertal mammary gland

description:
Comparing pre-pubertal mammary gland versus post-pubertal mammary gland on the BMAM microarray.
Keywords = pre-pubertal, post-pubertal, mammary, cDNA, EST, bovine, microarray

source_name: pre-pubertal mammary gland (136kg. Holstein heifer )

source_name: post-pubertal mammary gland (310kg. Holstein heifer)


title: Bovine ileum tissue vs. reference

description:
Comparing bovine ileum versus a reference on the BMAM microarray.
Keywords = ileum, mammary, bovine, cDNA, EST

source_name: bovine ileum


title: Pre-pubertal mammary gland vs. lactating mammary gland

description:
Comparing bovine pre-pubertal mammary gland versus lactating mammary gland on the BMAM microarray.
Keywords = post-pubertal, mammary, lactation, bovine, EST, cDNA, microarray

source_name: lactating mammary gland

source_name: pre-pubertal mammary gland (227kg. Holstein heifer)


title: Bovine liver tissue vs. reference

description:
Comparing bovine liver tissue versus a reference on the BMAM microarray.
Keywords = liver, mammary, microarray, bovine, EST, cDNA

source_name: bovine liver tissue


title: Bovine thymus tissue vs. reference

description:
Comparing bovine thymus tissue versus a reference on the BMAM microarray.
Keywords = thymus, mammary, microarray, bovine, cDNA, EST

source_name: bovine thymus tissue


title: Reference vs. Reference (2)


title: Bovine lymph tissue vs. reference

description:
Comparing bovine lymph tissue versus a reference on the BMAM microarray.
Keywords = lymph, mammary, microarray, bovine, cDNA, EST

source_name: bovine lymph tissue


title: S11

description: 24 h after cold treatment


title: Bovine adipose tissue vs. reference

description:
Comparing bovine adipose tissue versus a reference on the BMAM microarray.
Keywords = adipose, mammary, microarray, bovine, cDNA, EST

source_name: bovine adipose tissue


title: S4

description: 12 h after cold treatment


title: S6

description: 48 h after cold treatment


title: S3

description: 6 h after cold treatment


title: S2

description: 3 hours after cold treatment


title: S5

description: 24 h after cold treatment


title: Bovine spleen tissue vs reference

description:
Comparing bovine spleen tissue versus a reference on the BMAM microarray.
Keywords = spleen, mammary, cDNA, microarray, EST, bovine

source_name: bovine spleen tissue


title: S9

description: 6 h after cold treatment


description:
Comparing bovine pre-pubertal mammary gland versus bovine lactating mammary gland on the BMAM microarray.
Keywords = prepubertal, lactation, mammary, microarray, cDNA, EST, bovine

source_name: pre-pubertal mammary gland (136kg. Holstein heifer)


title: S1

description:
Control (0 h after cold treatment)
Keywords = sugarcane, cold, nylon


title: S7

description: Control (0 h after cold treatment)


title: S10

description: 12 h after cold treatment


title: S8

description: 3 h after cold treatment


title: Overexpression of the plant LAMMER kinase PK12 t90

status: Public on Feb 05 2003

city: Rehovot

first: Robert

last: Fluhr

department: Plant Sciences

country: Israel

institute: Weizmann Institute of Science

description:
RNA was extracted from plants that overexpress PK12 and from non-transformed plants. Plants were grown for 21 days under long day conditions. Hybridization was performed on an array from Arabidopsis Keck Resource Lab Array (Yale University) containing 9K Arabidopsis ESTs. Data in this platform contains 4 repetitions including 2 independent biological experiments.
Keywords = alternative splicing, phosphorylation

organism: Arabidopsis thaliana

source_name: Non-transformed plants

source_name: Plants that overexpress PK12


title: Samarkand array 5

status: Public on Jan 31 2003

city: Cambridge

first: Scott

middle: A

last: Rifkin

state: MA

address: 16 Divinity Ave

department: OEB

institute: Harvard University

description:
Strain: Samarkand
White prepupae vs. blue gut larvae

organism: Drosophila melanogaster

source_name: white prepupae

source_name: blue gut larvae


title: Drosophila simulans array 3

description: white prepupae vs. blue gut larvae

organism: Drosophila simulans


title: Overexpression of the plant LAMMER kinase PK12 b90

description:
RNA was extracted from plants that overexpress PK12 and from non-transformed plants. Plants were grown for 21 days under long day conditions. Hybridization was performed on an array from Arabidopsis Keck Resource Lab Array (Yale University) containing 9K Arabidopsis ESTs. Data in this platform contains 4 repetitions including 2 independent biological experiments.
Keywords = Alternative splicing, phosphorylation


title: Overexpression of the plant LAMMER kinase PK12 b100


title: Samarkand array 6

description:
Strain: Samarkand
Blue gut larvae vs. white prepupae


title: Overexpression of the plant LAMMER kinase PK12 61

description:
RNA was extracted from plants that overexpress PK12 and from non-transformed plants. Plants were grown for 10 days under long day conditions. Hybridization was performed on an array from Arabidopsis Keck Resource Lab Array (Yale University) containing 12K Arabidopsis ESTs. Data in this platform contains 4 repetitions including 2 independent biological experiments.
Keywords = alternative splicing, phosphorylation


title: OregonR array 2

description:
Strain: Oregon R
Blue gut larvae vs. white prepupae


title: Samarkand array 3


title: OregonR array 4

description:
Strain: Oregon R
White prepupae vs. blue gut larvae


title: Overexpression of the plant LAMMER kinase PK12  60


title: Netherlands2 array 1

description:
Strain: Netherlands 2
Blue gut larvae versus white prepupae


title: Netherlands2 array 4

description:
Stain: Netherlands 2
White prepupae vs. blue gut larvae


title: Samarkand array 2


title: Drosophila simulans array 2

description: blue gut larvae vs. white prepupae


title: Netherlands2 array 2

description:
Strain: Netherlands 2
White prepupae vs. blue gut larvae


title: OregonR array 1


title: Overexpression of the plant LAMMER kinase PK12 56

description:
RNA was extracted from plants that overexpress PK12 and from non-transformed plants. Plants were grown for 10 days under long day conditions. Hybridization was performed on an array from Arabidopsis Keck Resource Lab Array (Yale University) containing 12K Arabidopsis ESTs. Data in this platform contains 4 repetitions including 2 independent biological experiments.
Keywords = alternative splicing
Keywords = phosphorylation


title: Overexpression of the plant LAMMER kinase PK12 57


title: CantonS array 3

description:
Strain: Canton S
Blue gut larvae vs. white prepupae


title: CantonS array 4

description:
Strain: Canton S
White prepupae vs. blue gut larvae


title: Drosophila yakuba array 4

description: white prepupae vs. blue gut larvae

organism: Drosophila yakuba


title: Samarkand array 1


title: Drosophila simulans array 1

description: blue gut larvae vs. white prepupae


title: Samarkand array 4


title: Drosophila simulans array 4

description: white prepupae vs. blue gut larvae


title: OregonR array 3


title: Netherlands2 array 3

description:
Strain: Netherlands 2
Blue gut larvae vs. white prepupae


title: Drosophila yakuba array 3

description: blue gut larvae vs. white prepupae


title: Overexpression of the plant LAMMER kinase PK12 t100


title: CantonS array 1


title: RH_TH3_negA

status: Public on Jan 29 2003

city: Munich

first: Reinhard

last: Hoffmann

address: Trogerstr. 30

country: Germany

institute: Institute for medical microbiology

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4-CD8-
Replicate number: 3   (Note: all samples with identical replicate numbers are derived from the same vial of cells).

source_name: Thymic T cell precursors


title: RH_TH3_44A

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44+CD25-CD4-CD8-
Replicate number: 3   (Note: all samples with identical replicate numbers are derived from the same vial of cells).


title: RH_TH3_48LB

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4+CD8+large
Replicate number: 3   (Note: all samples with identical replicate numbers are derived from the same vial of cells).


title: RH_TH3_4B

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD25-CD44-CD4+CD8-
Replicate number: 3   (Note: all samples with identical replicate numbers are derived from the same vial of cells).


title: RH_TH3_8A

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD25-CD44-CD4-CD8+
Replicate number: 3   (Note: all samples with identical replicate numbers are derived from the same vial of cells).


title: RH_TH3_4A


title: Drosophila yakuba array 1

description: White prepupae vs. blue gut larvae


title: RH_TH3_2544A

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44+CD25+CD4-CD8-
Replicate number: 3   (Note: all samples with identical replicate numbers are derived from the same vial of cells).


title: Drosophila yakuba array 2

description: blue gut larvae vs. white prepupae


title: RH_TH3_negB


title: RH_TH3_25A

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25+CD4-CD8-
Replicate number: 3   (Note: all samples with identical replicate numbers are derived from the same vial of cells).


title: RH_TH3_25B


title: RH_TH3_44B


title: RH_TH3_2544B


title: RH_TH2_negB

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4-CD8-
Replicate number: 2   (Note: all samples with identical replicate numbers are derived from the same vial of cells).


title: RH_TH3_48LA


title: RH_TH2_negA


title: RH_TH3_8B


title: RH_TH2_4B

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD25-CD44-CD4+CD8-
Replicate number: 2   (Note: all samples with identical replicate numbers are derived from the same vial of cells).


title: RH_TH2_44B

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44+CD25-CD4-CD8-
Replicate number: 2   (Note: all samples with identical replicate numbers are derived from the same vial of cells).


title: RH_TH2_4A


title: RH_TH2_48sB

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4+CD8+small
Replicate number: 2   (Note: all samples with identical replicate numbers are derived from the same vial of cells).


title: RH_TH2_44A


title: RH_TH2_48sA


title: RH_TH2_25B

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25+CD4-CD8-
Replicate number: 2   (Note: all samples with identical replicate numbers are derived from the same vial of cells).


title: RH_TH2_25A


title: RH_Th9_negB

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4-CD8-
Replicate number: 9   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 3148.08, Stdev: 222.97, Max: 3623.5, Min: 2839.1
Corner+ Avg:3219, Count:32
Corner- Avg:42627, Count:32
BF= SDT=275.5(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=68.87 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=275.5 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th9_48SB

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4+CD8+small
Replicate number: 9   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 2916.24, Stdev: 154.48, Max: 3168.2, Min: 2531.2
Corner+ Avg:3374, Count:32
Corner- Avg:43100, Count:32
BF= SDT=268.5(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=67.12 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=268.5 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th9_8A

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD25-CD44-CD4-CD8+
Replicate number: 9   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 1890.85, Stdev: 83.65, Max: 2008.9, Min: 1739.3
Corner+ Avg:6500, Count:32
Corner- Avg:44310, Count:32
BF= SDT=171.1(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=42.78 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=171.1 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th9_8B

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD25-CD44-CD4-CD8+
Replicate number: 9   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 1305.47, Stdev: 46.85, Max: 1397.4, Min: 1219.9
Corner+ Avg:3418, Count:32
Corner- Avg:44896, Count:32
BF= SDT=151.7(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=37.93 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=151.7 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th9_48SA

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4+CD8+small
Replicate number: 9   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 3965.52, Stdev: 301.43, Max: 4473.0, Min: 3604.3
Corner+ Avg:3836, Count:32
Corner- Avg:41824, Count:32
BF= SDT=320.0(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=80.00 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=320.0 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: CantonS array 2

description:
Strain: Canton S
White prepupae vs. blue gut larvae


title: RH_Th9_negA

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4-CD8-
Replicate number: 9   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 4737.75, Stdev: 373.89, Max: 5366.5, Min: 4091.9
Corner+ Avg:7609, Count:32
Corner- Avg:42001, Count:32
BF= SDT=312.0(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=77.99 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=312.0 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th7_8B

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD25-CD44-CD4-CD8+
Replicate number: 7   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 4233.10, Stdev: 364.30, Max: 4798.9, Min: 3742.6
Corner+ Avg:4046, Count:32
Corner- Avg:42358, Count:32
BF= SDT=281.2(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=70.29 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=281.2 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th9_2544B

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44+CD25+CD4-CD8-
Replicate number: 9   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 3327.17, Stdev: 164.46, Max: 3623.1, Min: 2973.7
Corner+ Avg:4878, Count:32
Corner- Avg:42641, Count:32
BF= SDT=255.1(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=63.78 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=255.1 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th9_25A

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25+CD4-CD8-
Replicate number: 9   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 3136.57, Stdev: 248.40, Max: 3406.1, Min: 2570.9
Corner+ Avg:3725, Count:32
Corner- Avg:42947, Count:32
BF= SDT=289.2(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=72.29 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=289.2 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th7_48LA

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4+CD8+large
Replicate number: 7   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 1828.19, Stdev: 76.29, Max: 1954.4, Min: 1702.4
Corner+ Avg:6334, Count:32
Corner- Avg:44381, Count:32
BF= SDT=177.6(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=44.41 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=177.6 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th7_2544B

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44+CD25+CD4-CD8-
Replicate number: 7   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 4173.69, Stdev: 418.28, Max: 4689.2, Min: 3231.2
Corner+ Avg:2955, Count:32
Corner- Avg:41638, Count:32
BF= SDT=304.0(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=76.00 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=304.0 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th7_48LB

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4+CD8+large
Replicate number: 7   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 5852.99, Stdev: 601.98, Max: 6678.5, Min: 4958.2
Corner+ Avg:3704, Count:32
Corner- Avg:41194, Count:32
BF= SDT=348.5(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=87.13 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=348.5 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th7_negB

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4-CD8-
Replicate number: 7   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 5318.00, Stdev: 205.71, Max: 5626.0, Min: 4887.7
Corner+ Avg:2859, Count:32
Corner- Avg:40598, Count:32
BF= SDT=329.8(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=82.45 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=329.8 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th7_44A

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44+CD25-CD4-CD8-
Replicate number: 7   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 1975.24, Stdev: 63.60, Max: 2102.0, Min: 1868.8
Corner+ Avg:6662, Count:32
Corner- Avg:44230, Count:32
BF= SDT=178.4(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=44.60 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=178.4 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th9_2544A

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44+CD25+CD4-CD8-
Replicate number: 9   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 3473.73, Stdev: 140.93, Max: 3654.9, Min: 3163.7
Corner+ Avg:4073, Count:32
Corner- Avg:42664, Count:32
BF= SDT=284.3(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=71.07 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=284.3 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th7_negA

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4-CD8-
Replicate number: 7   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 1441.30, Stdev: 69.90, Max: 1562.4, Min: 1301.8
Corner+ Avg:5389, Count:32
Corner- Avg:44799, Count:32
BF= SDT=156.3(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=39.08 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=156.3 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th6_4B

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD25-CD44-CD4+CD8-
Replicate number: 6   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 4557.15, Stdev: 289.20, Max: 5246.4, Min: 4164.5
Corner+ Avg:4991, Count:32
Corner- Avg:41172, Count:32
BF= SDT=298.4(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=74.61 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=298.4 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th6_48SB

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4+CD8+small
Replicate number: 6   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 3463.79, Stdev: 228.91, Max: 3915.7, Min: 3146.0
Corner+ Avg:7151, Count:32
Corner- Avg:42547, Count:32
BF= SDT=247.4(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=61.84 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=247.4 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th7_44B

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44+CD25-CD4-CD8-
Replicate number: 7   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 4279.53, Stdev: 140.19, Max: 4583.1, Min: 3988.8
Corner+ Avg:2863, Count:32
Corner- Avg:42000, Count:32
BF= SDT=276.8(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=69.19 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=276.8 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th7_8A

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD25-CD44-CD4-CD8+
Replicate number: 7   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 1546.40, Stdev: 88.99, Max: 1669.9, Min: 1346.1
Corner+ Avg:5564, Count:32
Corner- Avg:44572, Count:32
BF= SDT=163.2(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=40.80 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=163.2 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th7_2544A

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44+CD25+CD4-CD8-
Replicate number: 7   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 1491.69, Stdev: 61.45, Max: 1570.1, Min: 1367.1
Corner+ Avg:5648, Count:32
Corner- Avg:44699, Count:32
BF= SDT=155.5(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=38.86 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=155.5 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th6_4A

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD25-CD44-CD4+CD8-
Replicate number: 6   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 2041.23, Stdev: 51.09, Max: 2118.0, Min: 1907.1
Corner+ Avg:4455, Count:32
Corner- Avg:44152, Count:32
BF= SDT=189.0(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=47.24 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=189.0 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th6_48LA

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4+CD8+large
Replicate number: 6   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 1187.76, Stdev: 54.22, Max: 1329.2, Min: 1100.8
Corner+ Avg:3903, Count:32
Corner- Avg:45034, Count:32
BF= SDT=142.5(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=35.61 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=142.5 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th6_48SA

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4+CD8+small
Replicate number: 6   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 3790.67, Stdev: 348.84, Max: 4330.5, Min: 3243.6
Corner+ Avg:3943, Count:32
Corner- Avg:41955, Count:32
BF= SDT=285.8(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=71.46 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=285.8 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th5_4B

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD25-CD44-CD4+CD8-
Replicate number: 5   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 3439.30, Stdev: 439.18, Max: 4328.3, Min: 2802.2
Corner+ Avg:1313, Count:32
Corner- Avg:41950, Count:32
BF= SDT=285.5(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=71.38 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=285.5 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th5_8A

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD25-CD44-CD4-CD8+
Replicate number: 5   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 1044.14, Stdev: 44.52, Max: 1113.8, Min: 971.1
Corner+ Avg:1496, Count:32
Corner- Avg:45202, Count:32
BF= SDT=126.0(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=31.50 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=126.0 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th6_48LB

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4+CD8+large
Replicate number: 6   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 3079.34, Stdev: 160.35, Max: 3433.5, Min: 2916.8
Corner+ Avg:3762, Count:32
Corner- Avg:42761, Count:32
BF= SDT=240.8(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=60.19 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=240.8 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th5_8B

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD25-CD44-CD4-CD8+
Replicate number: 5   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 1788.02, Stdev: 66.03, Max: 1902.7, Min: 1675.9
Corner+ Avg:1427, Count:32
Corner- Avg:44468, Count:32
BF= SDT=179.2(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=44.80 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=179.2 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th5_48SA

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4+CD8+small
Replicate number: 5   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 1355.16, Stdev: 65.52, Max: 1446.6, Min: 1213.8
Corner+ Avg:5686, Count:32
Corner- Avg:44853, Count:32
BF= SDT=148.4(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=37.10 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=148.4 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th5_4A

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD25-CD44-CD4+CD8-
Replicate number: 5   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 1440.48, Stdev: 121.77, Max: 1770.0, Min: 1328.8
Corner+ Avg:2212, Count:32
Corner- Avg:44502, Count:32
BF= SDT=158.0(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=39.51 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=158.0 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th5_48SB

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4+CD8+small
Replicate number: 5   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 2706.96, Stdev: 82.72, Max: 2893.0, Min: 2596.6
Corner+ Avg:802, Count:32
Corner- Avg:43268, Count:32
BF= SDT=249.7(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=62.42 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=249.7 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th5_25B

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25+CD4-CD8-
Replicate number: 5   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 3496.93, Stdev: 913.98, Max: 5136.6, Min: 1936.0
Corner+ Avg:27150, Count:32
Corner- Avg:41874, Count:32
BF= SDT=266.4(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=66.59 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=266.4 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th5_48LB

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4+CD8+large
Replicate number: 5   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 4374.44, Stdev: 149.54, Max: 4602.1, Min: 4164.7
Corner+ Avg:3030, Count:32
Corner- Avg:41689, Count:32
BF= SDT=300.5(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=75.13 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=300.5 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th5_25A

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25+CD4-CD8-
Replicate number: 5   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 1373.86, Stdev: 57.48, Max: 1507.8, Min: 1286.1
Corner+ Avg:1397, Count:32
Corner- Avg:44773, Count:32
BF= SDT=157.8(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=39.45 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=157.8 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th5_44A

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44+CD25-CD4-CD8-
Replicate number: 5   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 1154.59, Stdev: 46.72, Max: 1226.3, Min: 1066.6
Corner+ Avg:4059, Count:32
Corner- Avg:45041, Count:32
BF= SDT=133.9(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=33.48 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=133.9 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th5_48LA

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4+CD8+large
Replicate number: 5   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 1636.09, Stdev: 62.29, Max: 1743.6, Min: 1535.9
Corner+ Avg:4049, Count:32
Corner- Avg:44572, Count:32
BF= SDT=166.4(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=41.59 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=166.4 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th4_negA

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4-CD8-
Replicate number: 4   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 1214.04, Stdev: 36.87, Max: 1272.8, Min: 1147.3
Corner+ Avg:1781, Count:32
Corner- Avg:44933, Count:32
BF= SDT=130.3(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=32.57 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=130.3 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000


title: RH_Th5_44B

description:
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44+CD25-CD4-CD8-
Replicate number: 5   (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 4093.98, Stdev: 497.30, Max: 4942.8, Min: 3321.0
Corner+ Avg:1242, Count:32
Corner- Avg:41039, Count:32
BF= SDT=289.2(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=72.29 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=289.2 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000