title: Primary B cells vs Primary B cells 360min (set 3)


title: Primary B cells vs Primary B cells 360min (set 15)

status: Public on Feb 16 2004

type: RNA

city: Pasadena

first: Sangdun

last: Choi

state: CA

address: 1200 E. California Blvd

department: Biology

country: USA

institute: California Institute of Technology

description:
Control total RNA was extracted from primary B cells cultured for 0 min.
Test total RNA was extracted from primary B cells cultured for 360min.

molecule: total RNA

organism: Mus musculus

source_name: Total RNA from primary B cells was labeled with Cyanine-3 (green).

source_name: Total RNA from primary B cells cultured for 360min was labeled with Cyanine-5 (red).


title: Primary B cells vs Primary B cells 360min (set 14)


title: Primary B cells vs Primary B cells 360min (set 10)


title: Primary B cells vs Primary B cells 180min (set 6)

description:
Control total RNA was extracted from primary B cells cultured for 0 min.
Test total RNA was extracted from primary B cells cultured for 180min.

source_name: Total RNA from primary B cells cultured for 180min was labeled with Cyanine-5 (red).


title: Primary B cells vs Primary B cells 360min (set 1)


title: Primary B cells vs Primary B cells 360min (set 13)


title: Primary B cells vs Primary B cells 180min (set 2)


title: Primary B cells vs Primary B cells 180min (set 1)


title: Primary B cells vs Primary B cells 180min (set 14)


title: Primary B cells vs Primary B cells 180min (set 16)


title: Primary B cells vs Primary B cells 180min (set 12)


title: Primary B cells vs Primary B cells 180min (set 9)


title: Primary B cells vs Primary B cells 180min (set 3)


title: Primary B cells vs Primary B cells 180min (set 5)


title: Primary B cells vs Primary B cells 180min (set 13)


title: Primary B cells vs Primary B cells 180min (set 15)


title: Primary B cells vs Primary B cells 180min (set 4)


title: Untreated B cells 60min vs Terbutaline treated B cells 60min (set 2)

description:
Control total RNA was extracted from untreated B cells cultured for 60min.
Test total RNA was extracted from B cells treated with Terbutaline for 60min.

source_name: Total RNA from untreated B cells cultured for 60min was labeled with Cyanine-3 (green).

source_name: Total RNA from B cells treated with Terbutaline for 60min was labeled with Cyanine-5 (red).


title: Primary B cells vs Primary B cells 180min (set 11)


title: Untreated B cells 360min vs Terbutaline treated B cells 360min (set 1)

description:
Control total RNA was extracted from untreated B cells cultured for 360min.
Test total RNA was extracted from B cells treated with Terbutaline for 360min.

source_name: Total RNA from untreated B cells cultured for 360min was labeled with Cyanine-3 (green).

source_name: Total RNA from B cells treated with Terbutaline for 360min was labeled with Cyanine-5 (red).


title: Untreated B cells 60min vs Terbutaline treated B cells 60min (set 3)


title: Wt Systemic Wounded 1

status: Public on Feb 17 2004

city: Rehovot

first: Robert

last: Fluhr

department: Plant Sciences

country: Israel

institute: Weizmann Institute of Science

description:
Wild Type Systemic Wounded. Sample is leaf from wounded plant.
Replicate 1

organism: Solanum lycopersicum

source_name: Pooled Reference (all  samples in this series together)

source_name: Wild Type Systemic Wounded (leaf from wounded plant)


title: Untreated B cells 360min vs Terbutaline treated B cells 360min (set 3)


title: Primary B cells vs Primary B cells 360min (set 12)


title: Untreated B cells 60min vs Lipopolysaccharide treated B cells 60min (set 3)

description:
Control total RNA was extracted from untreated B cells cultured for 60min.
Test total RNA was extracted from B cells treated with Lipopolysaccharide for 60min.

source_name: Total RNA from B cells treated with Lipopolysaccharide for 60min was labeled with Cyanine-5 (red).


title: Untreated B cells 60min vs Lipopolysaccharide treated B cells 60min (set 2)


title: Untreated B cells 360min vs Terbutaline treated B cells 360min (set 2)


title: Untreated B cells 180min vs Terbutaline treated B cells 180min (set 3)

description:
Control total RNA was extracted from untreated B cells cultured for 180min.
Test total RNA was extracted from B cells treated with Terbutaline for 180min.

source_name: Total RNA from untreated B cells cultured for 180min was labeled with Cyanine-3 (green).

source_name: Total RNA from B cells treated with Terbutaline for 180min was labeled with Cyanine-5 (red).


title: Untreated B cells 60min vs Lipopolysaccharide treated B cells 60min (set 6)


title: Untreated B cells 60min vs Lipopolysaccharide treated B cells 60min (set 4)


title: Untreated B cells 360min vs Lipopolysaccharide treated B cells 360min (set 6)

description:
Control total RNA was extracted from untreated B cells cultured for 360min.
Test total RNA was extracted from B cells treated with Lipopolysaccharide for 360min.

source_name: Total RNA from B cells treated with Lipopolysaccharide for 360min was labeled with Cyanine-5 (red).


title: Untreated B cells 60min vs Lipopolysaccharide treated B cells 60min (set 5)


title: Untreated B cells 180min vs Lipopolysaccharide treated B cells 180min (set 6)

description:
Control total RNA was extracted from untreated B cells cultured for 180min.
Test total RNA was extracted from B cells treated with Lipopolysaccharide for 180min.

source_name: Total RNA from B cells treated with Lipopolysaccharide for 180min was labeled with Cyanine-5 (red).


title: Untreated B cells 360min vs Lipopolysaccharide treated B cells 360min (set 3)


title: Untreated B cells 60min vs Terbutaline treated B cells 60min (set 1)


title: Untreated B cells 180min vs Lipopolysaccharide treated B cells 180min (set 3)


title: Untreated B cells 60min vs Lipopolysaccharide treated B cells 60min (set 1)


title: Untreated B cells 360min vs Lipopolysaccharide treated B cells 360min (set 5)


title: Untreated B cells 360min vs Lipopolysaccharide treated B cells 360min (set 1)


title: Untreated B cells 360min vs Lipopolysaccharide treated B cells 360min (set 2)


title: Untreated B cells 180min vs Terbutaline treated B cells 180min (set 1)


title: Untreated B cells 180min vs Lipopolysaccharide treated B cells 180min (set 4)


title: Untreated B cells 360min vs Lipopolysaccharide treated B cells 360min (set 4)


title: Untreated B cells 180min vs Lipopolysaccharide treated B cells 180min (set 5)


title: Primary B cells vs Primary B cells 180min (set 10)


title: Untreated B cells 180min vs Terbutaline treated B cells 180min (set 2)


title: Untreated B cells 180min vs Lipopolysaccharide treated B cells 180min (set 1)


title: Untreated B cells 60min vs IL4 treated B cells 60min (set 2)

description:
Control total RNA was extracted from untreated B cells cultured for 60min.
Test total RNA was extracted from B cells treated with IL4 for 60min.

source_name: Total RNA from B cells treated with IL4 for 60min was labeled with Cyanine-5 (red).


title: Untreated B cells 360min vs IL4 treated B cells 360min (set 2)

description:
Control total RNA was extracted from untreated B cells cultured for 360min.
Test total RNA was extracted from B cells treated with IL4 for 360min.

source_name: Total RNA from B cells treated with IL4 for 360min was labeled with Cyanine-5 (red).


title: Untreated B cells 60min vs IL4 treated B cells 60min (set 3)


title: Untreated B cells 60min vs IL4 treated B cells 60min (set 1)


title: Untreated B cells 60min vs ELC and Lipopolysaccharide treated B cells 60min (set 2)

description:
Control total RNA was extracted from untreated B cells cultured for 60min.
Test total RNA was extracted from B cells treated with ELC and Lipopolysaccharide for 60min.

source_name: Total RNA from B cells treated with ELC and Lipopolysaccharide for 60min was labeled with Cyanine-5 (red).


title: Untreated B cells 60min vs ELC and Lipopolysaccharide treated B cells 60min (set 1)


title: Untreated B cells 360min vs IL4 treated B cells 360min (set 3)


title: Untreated B cells 180min vs ELC and Lipopolysaccharide treated B cells 180min (set 2)

description:
Control total RNA was extracted from untreated B cells cultured for 180min.
Test total RNA was extracted from B cells treated with ELC and Lipopolysaccharide for 180min.

source_name: Total RNA from B cells treated with ELC and Lipopolysaccharide for 180min was labeled with Cyanine-5 (red).


title: Untreated B cells 360min vs ELC and Lipopolysaccharide treated B cells 360min (set 2)

description:
Control total RNA was extracted from untreated B cells cultured for 360min.
Test total RNA was extracted from B cells treated with ELC and Lipopolysaccharide for 360min.

source_name: Total RNA from B cells treated with ELC and Lipopolysaccharide for 360min was labeled with Cyanine-5 (red).


title: Untreated B cells 60min vs ELC and Lipopolysaccharide treated B cells 60min (set 3)


title: Untreated B cells 180min vs Lipopolysaccharide treated B cells 180min (set 2)


title: Untreated B cells 180min vs IL4 treated B cells 180min (set 2)

description:
Control total RNA was extracted from untreated B cells cultured for 180min.
Test total RNA was extracted from B cells treated with IL4 for 180min.

source_name: Total RNA from B cells treated with IL4 for 180min was labeled with Cyanine-5 (red).


title: Untreated B cells 180min vs IL4 treated B cells 180min (set 1)


title: Untreated B cells 360min vs IL4 treated B cells 360min (set 1)


title: Untreated B cells 180min vs ELC and Lipopolysaccharide treated B cells 180min (set 1)


title: Untreated B cells 180min vs ELC and Lipopolysaccharide treated B cells 180min (set 3)


title: Untreated B cells 360min vs ELC and Lipopolysaccharide treated B cells 360min (set 1)


title: Untreated B cells 60min vs ELC treated B cells 60min (set 1)

description:
Control total RNA was extracted from untreated B cells cultured for 60min.
Test total RNA was extracted from B cells treated with ELC for 60min.

source_name: Total RNA from untreated B cells cultured for 60min was labeled with Cyanine-3 (green).

source_name: Total RNA from B cells treated with ELC for 60min was labeled with Cyanine-5 (red).


title: Untreated B cells 60min vs ELC treated B cells 60min (set 4)


title: Untreated B cells 60min vs ELC treated B cells 60min (set 6)


title: Untreated B cells 60min vs ELC treated B cells 60min (set 2)


title: Untreated B cells 60min vs ELC treated B cells 60min (set 5)


title: Untreated B cells 360min vs ELC treated B cells 360min (set 2)

description:
Control total RNA was extracted from untreated B cells cultured for 360min.
Test total RNA was extracted from B cells treated with ELC for 360min.

source_name: Total RNA from untreated B cells cultured for 360min was labeled with Cyanine-3 (green).

source_name: Total RNA from B cells treated with ELC for 360min was labeled with Cyanine-5 (red).


title: Untreated B cells 60min vs ELC treated B cells 60min (set 3)


title: Untreated B cells 60min vs CD40 and Lipopolysaccharide treated B cells 60min (set 1)

description:
Control total RNA was extracted from untreated B cells cultured for 60min.
Test total RNA was extracted from B cells treated with CD40 and Lipopolysaccharide for 60min.

source_name: Total RNA from B cells treated with CD40 and Lipopolysaccharide for 60min was labeled with Cyanine-5 (red).


title: Untreated B cells 360min vs ELC treated B cells 360min (set 5)


title: Untreated B cells 60min vs CD40 and Lipopolysaccharide treated B cells 60min (set 3)


title: Untreated B cells 180min vs ELC treated B cells 180min (set 6)

description:
Control total RNA was extracted from untreated B cells cultured for 180min.
Test total RNA was extracted from B cells treated with ELC for 180min.

source_name: Total RNA from B cells treated with ELC for 180min was labeled with Cyanine-5 (red).


title: Untreated B cells 60min vs CD40 and Lipopolysaccharide treated B cells 60min (set 2)


title: Untreated B cells 360min vs CD40 and Lipopolysaccharide treated B cells 360min (set 3)

description:
Control total RNA was extracted from untreated B cells cultured for 360min.
Test total RNA was extracted from B cells treated with CD40 and Lipopolysaccharide for 360min.

source_name: Total RNA from B cells treated with CD40 and Lipopolysaccharide for 360min was labeled with Cyanine-5 (red).


title: Untreated B cells 180min vs IL4 treated B cells 180min (set 3)

source_name: Total RNA from untreated B cells cultured for 180min was labeled with Cyanine-3 (green).


title: Untreated B cells 360min vs ELC and Lipopolysaccharide treated B cells 360min (set 3)


title: Untreated B cells 180min vs ELC treated B cells 180min (set 1)


title: Untreated B cells 360min vs ELC treated B cells 360min (set 1)


title: Untreated B cells 180min vs ELC treated B cells 180min (set 3)


title: Untreated B cells 360min vs ELC treated B cells 360min (set 4)


title: Untreated B cells 360min vs CD40 and Lipopolysaccharide treated B cells 360min (set 2)


title: Untreated B cells 360min vs CD40 and Lipopolysaccharide treated B cells 360min (set 1)


title: Untreated B cells 180min vs ELC treated B cells 180min (set 2)


title: Untreated B cells 360min vs ELC treated B cells 360min (set 6)


title: Untreated B cells 360min vs ELC treated B cells 360min (set 3)


title: Untreated B cells 180min vs CD40 and Lipopolysaccharide treated B cells 180min (set 1)

description:
Control total RNA was extracted from untreated B cells cultured for 180min.
Test total RNA was extracted from B cells treated with CD40 and Lipopolysaccharide for 180min.

source_name: Total RNA from B cells treated with CD40 and Lipopolysaccharide for 180min was labeled with Cyanine-5 (red).


title: Untreated B cells 180min vs ELC treated B cells 180min (set 4)


title: Untreated B cells 180min vs CD40 and Lipopolysaccharide treated B cells 180min (set 3)


title: Untreated B cells 180min vs CD40 and Lipopolysaccharide treated B cells 180min (set 2)


title: Untreated B cells 180min vs ELC treated B cells 180min (set 5)


title: Untreated B cells 60min vs CD40 and IL4 treated B cells 60min (set 1)

description:
Control total RNA was extracted from untreated B cells cultured for 60min.
Test total RNA was extracted from B cells treated with CD40 and IL4 for 60min.

source_name: Total RNA from B cells treated with CD40 and IL4 for 60min was labeled with Cyanine-5 (red).


title: Untreated B cells 360min vs CD40 and IL4 treated B cells 360min (set 3)

description:
Control total RNA was extracted from untreated B cells cultured for 360min.
Test total RNA was extracted from B cells treated with CD40 and IL4 for 360min.

source_name: Total RNA from B cells treated with CD40 and IL4 for 360min was labeled with Cyanine-5 (red).


title: Untreated B cells 60min vs CD40 and IL4 treated B cells 60min (set 3)


title: Untreated B cells 360min vs CD40 and IL4 treated B cells 360min (set 2)


title: Untreated B cells 60min vs CD40 and IL4 treated B cells 60min (set 2)


title: Untreated B cells 180min vs CD40 and IL4 treated B cells 180min (set 3)

description:
Control total RNA was extracted from untreated B cells cultured for 180min.
Test total RNA was extracted from B cells treated with CD40 and IL4 for 180min.

source_name: Total RNA from B cells treated with CD40 and IL4 for 180min was labeled with Cyanine-5 (red).


title: Untreated B cells 360min vs Anti-IgM and Terbutaline treated B cells 360min (set 2)

description:
Control total RNA was extracted from untreated B cells cultured for 360min.
Test total RNA was extracted from B cells treated with Anti-IgM and Terbutaline for 360min.

source_name: Total RNA from B cells treated with Anti-IgM and Terbutaline for 360min was labeled with Cyanine-5 (red).


title: Untreated B cells 60min vs Anti-IgM and Terbutaline treated B cells 60min (set 3)

description:
Control total RNA was extracted from untreated B cells cultured for 60min.
Test total RNA was extracted from B cells treated with Anti-IgM and Terbutaline for 60min.

source_name: Total RNA from B cells treated with Anti-IgM and Terbutaline for 60min was labeled with Cyanine-5 (red).


title: Untreated B cells 360min vs Anti-IgM and Terbutaline treated B cells 360min (set 1)


title: Untreated B cells 180min vs Anti-IgM and Terbutaline treated B cells 180min (set 1)

description:
Control total RNA was extracted from untreated B cells cultured for 180min.
Test total RNA was extracted from B cells treated with Anti-IgM and Terbutaline for 180min.

source_name: Total RNA from B cells treated with Anti-IgM and Terbutaline for 180min was labeled with Cyanine-5 (red).


title: Untreated B cells 60min vs Anti-IgM and Terbutaline treated B cells 60min (set 2)


title: Untreated B cells 180min vs CD40 and IL4 treated B cells 180min (set 1)


title: Untreated B cells 180min vs CD40 and IL4 treated B cells 180min (set 2)


title: Untreated B cells 60min vs Anti-IgM and ELC treated B cells 60min (set 1)

description:
Control total RNA was extracted from untreated B cells cultured for 60min.
Test total RNA was extracted from B cells treated with Anti-IgM and ELC for 60min.

source_name: Total RNA from B cells treated with Anti-IgM and ELC for 60min was labeled with Cyanine-5 (red).


title: Untreated B cells 60min vs Anti-IgM and ELC treated B cells 60min (set 2)


title: Untreated B cells 180min vs Anti-IgM and Terbutaline treated B cells 180min (set 2)


title: Untreated B cells 360min vs Anti-IgM and ELC treated B cells 360min (set 3)

description:
Control total RNA was extracted from untreated B cells cultured for 360min.
Test total RNA was extracted from B cells treated with Anti-IgM and ELC for 360min.

source_name: Total RNA from B cells treated with Anti-IgM and ELC for 360min was labeled with Cyanine-5 (red).


title: Untreated B cells 360min vs Anti-IgM and Terbutaline treated B cells 360min (set 3)


title: Untreated B cells 180min vs Anti-IgM and Terbutaline treated B cells 180min (set 3)


title: Untreated B cells 360min vs CD40 and IL4 treated B cells 360min (set 1)


title: Untreated B cells 180min vs Anti-IgM and ELC treated B cells 180min (set 2)

description:
Control total RNA was extracted from untreated B cells cultured for 180min.
Test total RNA was extracted from B cells treated with Anti-IgM and ELC for 180min.

source_name: Total RNA from B cells treated with Anti-IgM and ELC for 180min was labeled with Cyanine-5 (red).


title: Untreated B cells 60min vs Anti-IgM and Terbutaline treated B cells 60min (set 1)

source_name: Total RNA from untreated B cells cultured for 60min was labeled with Cyanine-3 (green).


title: Untreated B cells 60min vs Anti-IgM and ELC treated B cells 60min (set 3)


title: Untreated B cells 360min vs Anti-IgM and ELC treated B cells 360min (set 1)

source_name: Total RNA from untreated B cells cultured for 360min was labeled with Cyanine-3 (green).


title: Untreated B cells 60min vs Anti-IgM and CD40 treated B cells 60min (set 3)

description:
Control total RNA was extracted from untreated B cells cultured for 60min.
Test total RNA was extracted from B cells treated with Anti-IgM and CD40 for 60min.

source_name: Total RNA from B cells treated with Anti-IgM and CD40 for 60min was labeled with Cyanine-5 (red).


title: Untreated B cells 360min vs Anti-IgM and ELC treated B cells 360min (set 2)


title: Untreated B cells 360min vs Anti-IgM and CD40 treated B cells 360min (set 3)

description:
Control total RNA was extracted from untreated B cells cultured for 360min.
Test total RNA was extracted from B cells treated with Anti-IgM and CD40 for 360min.

source_name: Total RNA from B cells treated with Anti-IgM and CD40 for 360min was labeled with Cyanine-5 (red).


title: Untreated B cells 180min vs Anti-IgM and ELC treated B cells 180min (set 3)


title: Untreated B cells 60min vs Anti-IgM and CD40 treated B cells 60min (set 1)


title: Untreated B cells 180min vs Anti-IgM and ELC treated B cells 180min (set 1)


title: Untreated B cells 360min vs Anti-IgM and CD40 treated B cells 360min (set 2)


title: Untreated B cells 60min vs Anti-IgM and CD40 treated B cells 60min (set 2)


title: Untreated B cells 360min vs Anti-IgM and CD40 treated B cells 360min (set 1)


title: Untreated B cells 180min vs Anti-IgM and CD40 treated B cells 180min (set 2)

description:
Control total RNA was extracted from untreated B cells cultured for 180min.
Test total RNA was extracted from B cells treated with Anti-IgM and CD40 for 180min.

source_name: Total RNA from B cells treated with Anti-IgM and CD40 for 180min was labeled with Cyanine-5 (red).


title: Untreated B cells 180min vs Anti-IgM and CD40 treated B cells 180min (set 3)


title: Untreated B cells 180min vs Anti-IgM and CD40 treated B cells 180min (set 1)


title: Untreated B cells 60min vs Anti-IgM treated B cells 60min (set 7)

description:
Control total RNA was extracted from untreated B cells cultured for 60min.
Test total RNA was extracted from B cells treated with Anti-IgM for 60min.

source_name: Total RNA from B cells treated with Anti-IgM for 60min was labeled with Cyanine-5 (red).


title: Untreated B cells 60min vs Anti-IgM treated B cells 60min (set 5)


title: Untreated B cells 360min vs Anti-IgM treated B cells 360min (set 7)

description:
Control total RNA was extracted from untreated B cells cultured for 360min.
Test total RNA was extracted from B cells treated with Anti-IgM for 360min.

source_name: Total RNA from B cells treated with Anti-IgM for 360min was labeled with Cyanine-5 (red).


title: Untreated B cells 360min vs Anti-IgM treated B cells 360min (set 5)


title: Untreated B cells 60min vs Anti-IgM treated B cells 60min (set 4)


title: Untreated B cells 360min vs Anti-IgM treated B cells 360min (set 3)


title: Untreated B cells 60min vs Anti-IgM treated B cells 60min (set 3)


title: Untreated B cells 60min vs Anti-IgM treated B cells 60min (set 2)


title: Untreated B cells 180min vs Anti-IgM treated B cells 180min (set 6)

description:
Control total RNA was extracted from untreated B cells cultured for 180min.
Test total RNA was extracted from B cells treated with Anti-IgM for 180min.

source_name: Total RNA from untreated B cells cultured for 180min was labeled with Cyanine-3 (green).

source_name: Total RNA from B cells treated with Anti-IgM for 180min was labeled with Cyanine-5 (red).


title: Untreated B cells 360min vs Anti-IgM treated B cells 360min (set 2)


title: Untreated B cells 180min vs Anti-IgM treated B cells 180min (set 2)


title: Untreated B cells 180min vs Anti-IgM treated B cells 180min (set 4)


title: Untreated B cells 60min vs CD40 treated B cells 60min (set 9)

description:
Control total RNA was extracted from untreated B cells cultured for 60min.
Test total RNA was extracted from B cells treated with CD40 for 60min.

source_name: Total RNA from B cells treated with CD40 for 60min was labeled with Cyanine-5 (red).


title: Untreated B cells 360min vs Anti-IgM treated B cells 360min (set 1)


title: Untreated B cells 360min vs Anti-IgM treated B cells 360min (set 4)


title: Untreated B cells 180min vs Anti-IgM treated B cells 180min (set 1)


title: Untreated B cells 60min vs Anti-IgM treated B cells 60min (set 6)


title: Untreated B cells 360min vs Anti-IgM treated B cells 360min (set 6)


title: Untreated B cells 180min vs Anti-IgM treated B cells 180min (set 5)


title: Untreated B cells 180min vs Anti-IgM treated B cells 180min (set 7)


title: Untreated B cells 60min vs Anti-IgM treated B cells 60min (set 1)


title: Untreated B cells 60min vs CD40 treated B cells 60min (set 6)


title: Untreated B cells 60min vs CD40 treated B cells 60min (set 8)


title: Untreated B cells 60min vs CD40 treated B cells 60min (set 7)


title: Untreated B cells 60min vs CD40 treated B cells 60min (set 5)


title: Untreated B cells 180min vs Anti-IgM treated B cells 180min (set 3)


title: Untreated B cells 60min vs CD40 treated B cells 60min (set 4)


title: Untreated B cells 60min vs CD40 treated B cells 60min (set 3)


title: Untreated B cells 60min vs CD40 treated B cells 60min (set 2)


title: Untreated B cells 60min vs CD40 treated B cells 60min (set 1)


title: Untreated B cells 360min vs CD40 treated B cells 360min (set 9)

description:
Control total RNA was extracted from untreated B cells cultured for 360min.
Test total RNA was extracted from B cells treated with CD40 for 360min.

source_name: Total RNA from B cells treated with CD40 for 360min was labeled with Cyanine-5 (red).


title: Untreated B cells 360min vs CD40 treated B cells 360min (set 8)


title: Untreated B cells 360min vs CD40 treated B cells 360min (set 7)


title: Untreated B cells 360min vs CD40 treated B cells 360min (set 4)


title: Untreated B cells 360min vs CD40 treated B cells 360min (set 6)


title: Untreated B cells 360min vs CD40 treated B cells 360min (set 3)


title: Untreated B cells 360min vs CD40 treated B cells 360min (set 1)


title: Untreated B cells 180min vs CD40 treated B cells 180min (set 5)

description:
Control total RNA was extracted from untreated B cells cultured for 180min.
Test total RNA was extracted from B cells treated with CD40 for 180min.

source_name: Total RNA from B cells treated with CD40 for 180min was labeled with Cyanine-5 (red).


title: Untreated B cells 360min vs CD40 treated B cells 360min (set 5)


title: Untreated B cells 180min vs CD40 treated B cells 180min (set 3)


title: ISB Halobacterium ORF array 04692

status: Public on Feb 14 2004

city: Seattle

first: Michael

middle: Hiroshi

last: Johnson

state: WA

address: 1441 North 34th Street

department: Computational Biology

institute: Institute for Systems Biology

description:
Halobacterium(R) vs. Halobacterium (C60)
Keywords = ISB
Keywords = Halobacterium
Keywords = UV

organism: Halobacterium salinarum NRC-1


title: Untreated B cells 180min vs CD40 treated B cells 180min (set 7)


title: Untreated B cells 180min vs CD40 treated B cells 180min (set 1)


title: ISB Halobacterium ORF array 03892

description:
Halobacterium(R) vs. Halobacterium (D30)
Keywords = ISB
Keywords = Halobacterium
Keywords = UV


title: Untreated B cells 180min vs CD40 treated B cells 180min (set 2)


title: Untreated B cells 180min vs CD40 treated B cells 180min (set 4)


title: ISB Halobacterium ORF array 04691

description:
Halobacterium(C60) vs. Halobacterium (R)
Keywords = ISB
Keywords = Halobacterium
Keywords = UV


title: ISB Halobacterium ORF array 03895

description:
Halobacterium(D60) vs. Halobacterium (R)
Keywords = ISB
Keywords = Halobacterium
Keywords = UV


title: Untreated B cells 180min vs CD40 treated B cells 180min (set 9)


title: ISB Halobacterium ORF array 03894

description:
Halobacterium(R) vs. Halobacterium (L60)
Keywords = ISB
Keywords = Halobacterium
Keywords = UV


title: ISB Halobacterium ORF array 03896

description:
Halobacterium(R) vs. Halobacterium (D60)
Keywords = ISB
Keywords = Halobacterium
Keywords = UV


title: Untreated B cells 360min vs CD40 treated B cells 360min (set 2)


title: ISB Halobacterium ORF array 03889

description:
Halobacterium(L30) vs. Halobacterium (R)
Keywords = ISB
Keywords = Halobacterium
Keywords = UV


title: ISB Halobacterium ORF array 03890

description:
Halobacterium(R) vs. Halobacterium (L30)
Keywords = ISB
Keywords = Halobacterium
Keywords = UV


title: ISB Halobacterium ORF array 03891

description:
Halobacterium(D30) vs. Halobacterium (R)
Keywords = ISB
Keywords = Halobacterium
Keywords = UV


title: RatLung_H72h_2

status: Public on Feb 11 2004

city: San Antonio

first: Phillip

last: Bowman

state: TX

address: 3400 Rawley E. Chambers Ave

institute: Institute of Surgical Research

description:
Male Sprague-Dawley rats weighing 280-300 g were anesthetized with 1.75% to 2.5% isofluorane and instrumented with two arterial catheters, one externalized for blood withdrawal and the other (not externalized) attached to the Data Sciences International (DSI) PhysioTel (St. Paul, MN, model C50-PXT) monitoring device placed intraperitoneally and used in monitoring blood pressure, temperature, and electrocardiogram data via telemetry.  After 7 to 10 days of recovery, and only after the animals had begun to gain weight, the experiment was performed.  At the beginning of hemorrhage (H), blood was withdrawn manually through the externalized catheter with 1-ml syringes at l ml/min.  Total blood volume was estimated to be 6.5% of the body weight and 40% of this (2.6 ml/100g) was removed to effect the hemorrhage.
Keywords = rat lung hemorrhage

organism: Rattus norvegicus

source_name: Lung of hemorrhaged animal 72h

source_name: Pooled RNA of equal amounts from 10 organs (liver, lung, kidney, spleen, heart, skeletal muscle, skin, jejunum, and brain) of untreated control animals


title: Untreated B cells 180min vs CD40 treated B cells 180min (set 6)


title: ISB Halobacterium ORF array 03893

description:
Halobacterium(L60) vs. Halobacterium (R)
Keywords = ISB
Keywords = Halobacterium
Keywords = UV


title: RatLung_H24h_2

source_name: Lung of hemorrhaged animal 24h


title: Untreated B cells 180min vs CD40 treated B cells 180min (set 8)


title: RatLung_H24h_3


title: RatLung_H72h_3


title: RatLung_H48h_1

source_name: Lung of hemorrhaged animal 48h


title: RatLung_H16h_3

source_name: Lung of hemorrhaged animal 16h


title: RatLung_H72h_1


title: RatLung_H48h_3


title: RatLung_H24h_1


title: RatLung_H48h_2


title: RatLung_H6h_4

source_name: Lung of hemorrhaged animal 6h


title: RatLung_Sh_4

source_name: Lung of sham animal


title: adenocarcinoma 3447

city: Koto-ku

first: Yuichi

last: Ishikawa

state: Tokyo

address: 3-8-31 Ariake

country: Japan

institute: Cancer Insitute

description: Primary adenocarcinoma

organism: Homo sapiens

source_name: adenocarcinoma 3447

source_name: lung reference mix


title: RatLung_H1h_3

source_name: Lung of hemorrhaged animal 1h


title: RatLung_H3h_1

source_name: Lung of hemorrhaged animal 3h


title: RatLung_H16h_1


title: RatLung_Sh_5


title: RatLung_H3h_3


title: RatLung_H3h_2


title: RatLung_H6h_5


title: RatLung_H16h_2


title: RatLung_H6h_1


title: adenocarcinoma 3420

description: Primary adenocarcinoma

source_name: adenocarcinoma 3420


title: RatLung_Sh_6


title: RatLung_H1h_1


title: RatLung_H6h_3


title: RatLung_H6h_2


title: adenocarcinoma 3863

description: Primary adenocarcinoma

source_name: adenocarcinoma 3863


title: adenocarcinoma 3479

description: Primary adenocarcinoma

source_name: adenocarcinoma 3479


title: RatLung_Sh_3


title: RatLung_H1h_2


title: adenocarcinoma 3336

description: Primary adenocarcinoma

source_name: adenocarcinoma 3336


title: RatLung_Con_3

source_name: Lung of control animal


title: adenocarcinoma 3216

description: Primary adenocarcinoma

source_name: adenocarcinoma 3216


title: adenocarcinoma 3368

description: Primary adenocarcinoma

source_name: adenocarcinoma 3368


title: RatLung_Sh_2

source_name: Pooled RNA of equal amounts from 10 organs (liver, lung, kidney, spleen, heart, skeletal muscle, skin, jejunum, and brain) of untreated control animals


title: Diaphragm 56 Day mdx rep 3

status: Public on Feb 10 2004

city: Cleveland

first: Henry

middle: J.

last: Kaminski

state: OH

address: 11100 Euclid Avenue

department: Neurology

institute: Case Western Reserve University

description: Standard Affymetrix Protocol

source_name: 56 Day Mouse Diaphragm muscle


title: RatLung_Con_2


title: Diaphragm 56 Day mdx rep 2

description: Standard Affymetrix Protocol


title: Diaphragm 112 Day mdx rep 3

description: Standard Affymetrix Protocol

source_name: 112 Day Mouse Diaphragm muscle


title: Diaphragm 112 Day mdx rep 2

description: Standard Affymetrix Protocol


title: Diaphragm 56 Day mdx rep 1

description: Standard Affymetrix Protocol


title: Diaphragm 56 Day control rep 1

description: Standard Affymetrix Protocol


title: Diaphragm 56 Day control rep 3

description: Standard Affymetrix Protocol


title: Diaphragm 28 Day mdx rep 1

description: Standard Affymetrix Protocol

source_name: 28 Day Mouse Diaphragm muscle


title: Diaphragm 112 Day control rep 1

description: Standard Affymetrix Protocol


title: Diaphragm 56 Day control rep 2

description: Standard Affymetrix Protocol


title: Diaphragm 28 Day mdx rep 3

description: Standard Affymetrix Protocol


title: Diaphragm 112 Day control rep 2

description: Standard Affymetrix Protocol


title: adenocarcinoma 3200

description: Primary adenocarcinoma

source_name: adenocarcinoma 3200


title: Diaphragm 28 Day mdx rep 2

description: Standard Affymetrix Protocol


title: Diaphragm 28 Day control rep 3

description: Standard Affymetrix Protocol


title: RatLung_Con_1


title: adenocarcinoma 3193

description: Primary adenocarcinoma

source_name: adenocarcinoma 3193


title: adenocarcinoma 3088

description: Primary adenocarcinoma

source_name: adenocarcinoma 3088


title: Diaphragm 23 Day mdx rep 2

description: Standard Affymetrix Protocol

source_name: 23 Day Mouse Diaphragm muscle


title: Diaphragm 23 Day mdx rep 3

description: Standard Affymetrix Protocol


title: Diaphragm 23 Day control rep 2

description: Standard Affymetrix Protocol


title: Diaphragm 23 Day mdx rep 1

description: Standard Affymetrix Protocol


title: Diaphragm 112 Day control rep 3

description: Standard Affymetrix Protocol


title: Diaphragm 112 Day mdx rep 1

description: Standard Affymetrix Protocol


title: Diaphragm 28 Day control rep 2

description: Standard Affymetrix Protocol


title: Diaphragm 28 Day control rep 1

description: Standard Affymetrix Protocol


title: Diaphragm 23 Day control rep 3

description: Standard Affymetrix Protocol


title: Diaphragm 14 Day mdx rep 1

description: Standard Affymetrix Protocol

source_name: 14 Day Mouse Diaphragm muscle


title: Diaphragm 14 Day control rep 3

description: Standard Affymetrix Protocol


title: Diaphragm 23 Day control rep 1

description: Standard Affymetrix Protocol


title: Diaphragm 7 Day control  rep 2

description: Standard Affymetrix Protocol

source_name: 7 Day Mouse Diaphragm muscle


title: Diaphragm 7 Day mdx rep 2

description: Standard Affymetrix Protocol


title: Diaphragm 14 day mdx rep 3

description: Standard Affymetrix Protocol


title: Diaphragm 14 Day mdx rep 2

description: Standard Affymetrix Protocol


title: Diaphragm 7 Day control rep 1

description: Standard Affymetrix Protocol


title: Diaphragm 7 day mdx rep 1

description: Standard Affymetrix Protocol


title: Diaphragm 7 day control rep 3

description: Standard Affymetrix Protocol


title: adenocarcinoma 3240

description: Primary adenocarcinoma

source_name: adenocarcinoma 3240

source_name: lung reference mix


title: Diaphragm 7 Day mdx rep 3

description: Standard Affymetrix Protocol


title: Leg 112 Day control rep 2

description: Standard Affymetrix Protocol

source_name: 112 Day Mouse leg muscle


title: Leg 56 Day control rep 3

description: Standard Affymetrix Protocol

source_name: 56 Day Mouse leg muscle


title: Leg 112 Day mdx rep 1

description: Standard Affymetrix Protocol


title: Leg 112 Day control rep 3

description: Standard Affymetrix Protocol


title: Leg 56 Day mdx rep 3

description: Standard Affymetrix Protocol


title: Diaphragm 14 Day control rep 2

description: Standard Affymetrix Protocol


title: Leg 112 Day control rep 1

description: Standard Affymetrix Protocol


title: Leg 112 Day mdx rep 2

description: Standard Affymetrix Protocol


title: Leg 56 Day control rep 1

description: Standard Affymetrix Protocol


title: Leg 112 day mdx rep 3

description: Standard Affymetrix Protocol


title: Leg 56 Day mdx rep 1

description: Standard Affymetrix Protocol


title: Leg 28 Day mdx rep 3

description: Standard Affymetrix Protocol

source_name: 28 Day Mouse leg muscle


title: Leg 28 Day mdx rep 2

description: Standard Affymetrix Protocol


title: Diaphragm 14 Day control rep 1

description: Standard Affymetrix Protocol


title: Leg 56 Day mdx rep 2

description: Standard Affymetrix Protocol


title: Leg 28 Day control rep 2

description: Standard Affymetrix Protocol


title: SS_KB2

city: Chicago

first: Bryan Angelo

middle: P

last: Roxas

state: IL

address: 900 S. Ashland Ave.

institute: University of Illinois at Chicago

description:
Total RNA was extracted from the left kidneys (K) of two strains of Rattus norvegicus, Sprague Dawley (SD) and Dahl SS/Jr (SS). Each strain had two groups, rats under 0.3% NaCl Diet (B) and 8.0% NaCl Diet (H) for 10 days. Samples were labelled by strain (SD or SS), tissue (K), diet (B or H) and rat number (1 to 3), e.g. SD KB1 is RNA from the kidney of the first Sprague Dawley rat under 0.3% NaCl diet for 10 days.
Keywords = Rattus norvegicus, Sprague Dawley, Dahl SS/Jr, kidney, NaCl diet

source_name: left kidney


title: Leg 23 Day mdx rep 3

description: Standard Affymetrix Protocol

source_name: 23 Day Mouse leg muscle


title: SS_KB1


title: Leg 28 Day control rep 1

description: Standard Affymetrix Protocol


title: SS_KH3


title: SD_KH3


title: Leg 56 Day control rep 2

description: Standard Affymetrix Protocol


title: Leg 23 Day mdx rep 2

description: Standard Affymetrix Protocol


title: Leg 28 Day control rep 3

description: Standard Affymetrix Protocol


title: SS_KH1


title: SS_KB3


title: SD_KB2


title: SD_KB1


title: SD_KH1


title: SD_KH2


title: Leg 23 Day control rep 2

description: Standard Affymetrix Protocol

source_name: 23 Day Mouse Leg Muscle


title: SD_KB3


title: Leg 28 Day mdx rep 1

description: Standard Affymetrix Protocol


title: Leg 23 Day mdx rep 1

description: Standard Affymetrix Protocol


title: Leg 23 Day control rep 3

description: Standard Affymetrix Protocol


title: liver, 24h starved, chip 24

status: Public on Feb 09 2004

city: Karlsruhe

last: Pankratz

department: Institute of Genetics

country: Germany

institute: Forschungszentrum Karlsruhe

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 6 animals (No. N1, N2, N3, N4, N5 and N6) fed during and before the 24h experiment with standard food, ad libitum; pool3 starved = 6 animals (No. St1, St2, St3, St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_025

source_name: pool3, normal

source_name: pool3, starved


title: liver, 24h starved, chip 23

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 6 animals (No. N1, N2, N3, N4, N5 and N6) fed during and before the 24h experiment with standard food, ad libitum; pool3 starved = 6 animals (No. St1, St2, St3, St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_024


title: liver, 24h starved, chip 15

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool2 normal = 3 animals (No. N4, N5 and N6) fed during and before the 24h experiment with standard food, ad libitum; pool2 starved = 3 animals (No. St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_020

source_name: pool2, starved

source_name: pool2, normal


title: liver, 24h starved, chip 14

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool2 normal = 3 animals (No. N4, N5 and N6) fed during and before the 24h experiment with standard food, ad libitum; pool2 starved = 3 animals (No. St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_019


title: liver, 24h starved, chip 22

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 6 animals (No. N1, N2, N3, N4, N5 and N6) fed during and before the 24h experiment with standard food, ad libitum; pool3 starved = 6 animals (No. St1, St2, St3, St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_023


title: liver, 24h starved, chip 16

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool2 normal = 3 animals (No. N4, N5 and N6) fed during and before the 24h experiment with standard food, ad libitum; pool2 starved = 3 animals (No. St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_021


title: liver, 24h starved, chip 11

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool2 normal = 3 animals (No. N4, N5 and N6) fed during and before the 24h experiment with standard food, ad libitum; pool2 starved = 3 animals (No. St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_016


title: liver, 24h starved, chip 13

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool2 normal = 3 animals (No. N4, N5 and N6) fed during and before the 24h experiment with standard food, ad libitum; pool2 starved = 3 animals (No. St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_018


title: liver, 24h starved, chip 17

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 6 animals (No. N1, N2, N3, N4, N5 and N6) fed during and before the 24h experiment with standard food, ad libitum; pool3 starved = 6 animals (No. St1, St2, St3, St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_012


title: liver, 24h starved, chip 12

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool2 normal = 3 animals (No. N4, N5 and N6) fed during and before the 24h experiment with standard food, ad libitum; pool2 starved = 3 animals (No. St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_017


title: liver, 24h starved, chip 20

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 6 animals (No. N1, N2, N3, N4, N5 and N6) fed during and before the 24h experiment with standard food, ad libitum; pool3 starved = 6 animals (No. St1, St2, St3, St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_015


title: liver, 24h starved, chip 4

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 24h experiment with standard food, ad libitum; pool1 starved = 3 animals (No. St1, St2 and St3) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_007

source_name: pool1, starved

source_name: pool1, normal


title: liver, 24h starved, chip 19

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 6 animals (No. N1, N2, N3, N4, N5 and N6) fed during and before the 24h experiment with standard food, ad libitum; pool3 starved = 6 animals (No. St1, St2, St3, St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_014


title: liver, 24h starved, chip 8

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 24h experiment with standard food, ad libitum; pool1 starved = 3 animals (No. St1, St2 and St3) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_011


title: liver, 24h starved, chip 18

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 6 animals (No. N1, N2, N3, N4, N5 and N6) fed during and before the 24h experiment with standard food, ad libitum; pool3 starved = 6 animals (No. St1, St2, St3, St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_013


title: liver, 24h starved, chip 10

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool2 normal = 3 animals (No. N4, N5 and N6) fed during and before the 24h experiment with standard food, ad libitum; pool2 starved = 3 animals (No. St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_002


title: liver, 24h starved, chip 21

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 6 animals (No. N1, N2, N3, N4, N5 and N6) fed during and before the 24h experiment with standard food, ad libitum; pool3 starved = 6 animals (No. St1, St2, St3, St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_022


title: liver, 24h starved, chip 2

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 24h experiment with standard food, ad libitum; pool1 starved = 3 animals (No. St1, St2 and St3) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_005


title: liver, 48h starved, chip 19

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool2 normal = 3 animals (No. N4, N5 and N6) fed during and before the 48h experiment with standard food, ad libitum; pool2 starved = 3 animals (No. St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_030


title: liver, 24h starved, chip 7

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 24h experiment with standard food, ad libitum; pool1 starved = 3 animals (No. St1, St2 and St3) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_010


title: liver, 24h starved, chip 6

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 24h experiment with standard food, ad libitum; pool1 starved = 3 animals (No. St1, St2 and St3) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_009


title: liver, 24h starved, chip 3

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 24h experiment with standard food, ad libitum; pool1 starved = 3 animals (No. St1, St2 and St3) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_006


title: liver, 48h starved, chip 21

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool2 normal = 3 animals (No. N4, N5 and N6) fed during and before the 48h experiment with standard food, ad libitum; pool2 starved = 3 animals (No. St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_032


title: liver, 48h starved, chip 23

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool2 normal = 3 animals (No. N4, N5 and N6) fed during and before the 48h experiment with standard food, ad libitum; pool2 starved = 3 animals (No. St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_034


title: liver, 48h starved, chip 24

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool2 normal = 3 animals (No. N4, N5 and N6) fed during and before the 48h experiment with standard food, ad libitum; pool2 starved = 3 animals (No. St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_035


title: liver, 24h starved, chip 9

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool2 normal = 3 animals (No. N4, N5 and N6) fed during and before the 24h experiment with standard food, ad libitum; pool2 starved = 3 animals (No. St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_001


title: liver, 24h starved, chip 1

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 24h experiment with standard food, ad libitum; pool1 starved = 3 animals (No. St1, St2 and St3) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_004


title: liver, 24h starved, chip 5

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 24h experiment with standard food, ad libitum; pool1 starved = 3 animals (No. St1, St2 and St3) fed before the experiment with standard food, ad libitum, starved during the 24h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp4_008


title: liver, 48h starved, chip 18

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool2 normal = 3 animals (No. N4, N5 and N6) fed during and before the 48h experiment with standard food, ad libitum; pool2 starved = 3 animals (No. St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_029


title: liver, 48h starved, chip 17

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool2 normal = 3 animals (No. N4, N5 and N6) fed during and before the 48h experiment with standard food, ad libitum; pool2 starved = 3 animals (No. St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_028


title: liver, 48h starved, chip 20

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool2 normal = 3 animals (No. N4, N5 and N6) fed during and before the 48h experiment with standard food, ad libitum; pool2 starved = 3 animals (No. St4, St5 and St6) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_031


title: liver, 48h starved, chip 14

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 48h experiment with standard food, ad libitum; pool1 starved = 3 animals (No. St1, St2 and St3) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_025


title: liver, 48h starved, chip 12

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 48h experiment with standard food, ad libitum; pool1 starved = 3 animals (No. St1, St2 and St3) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_023


title: liver, 48h starved, chip 13

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 48h experiment with standard food, ad libitum; pool1 starved = 3 animals (No. St1, St2 and St3) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_024


title: liver, 48h starved, chip 15

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 48h experiment with standard food, ad libitum; pool1 starved = 3 animals (No. St1, St2 and St3) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_026


title: liver, 48h starved, chip 16

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 48h experiment with standard food, ad libitum; pool1 starved = 3 animals (No. St1, St2 and St3) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_027


title: liver, 48h starved, chip 7

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 4 animals (No. N7, N8, N9 and N10) fed during and before the 48h experiment with standard food, ad libitum; pool3 starved = 4 animals (No. St7, St8, St9 and St10) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp6_033


title: Control 2nd repeat

status: Public on Feb 06 2004

city: Pullman

first: Daniel

middle: Scherer de

last: Moura

institute: Institute of Biological Chemistry

description: Arabidopsis seedlings (1 week-old ) were plated on 0.5 x MS salts and vitamins containing 6 g/L Phytagar (Gibco).  Seeds were surface sterilized by a 3 minutes incubation with 50 % ethanol, 0.5 % Triton X-100 followed by a brief rinse with 95 % ethanol.  Seeds were air-dried after surface sterilization.  Four Falcon grided deep Petri dishes of each genotype, aprox. 200 seeds per plate were used.  Petri dishes were cold treated (4 oC) for 48 h and then placed in a growth room [16 h day, 24 oC, 150 mE.m-2.s-1 (E, Einstein; 1 E = 1 mol of photons)] on a stand in a vertical orientation and left undisturbed.  After a week, total RNA was extracted with Trizol (Gibco) and further purified with RNeasy columns (Qiagen) following manufacturer instructions.  Total RNA was extracted from each genotype and, prior to target preparation, was mixed in equal proportions to make the control 1 sample [(Control 1= wild type + wild type transformed with the empty pART27 vector).  Synthesis of double-stranded cDNA, biotin-labeled cRNA, cRNA fragmentation, hybridization, washing, staining and scanning were performed according to GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were performed at the Sequencing Laboratory (Washington State University).

organism: Arabidopsis thaliana

source_name: Whole seedlings


title: 35S:AtRALF1-1 1st repeat

description: Arabidopsis seedlings (1 week-old ) were plated on 0.5 x MS salts and vitamins containing 6 g/L Phytagar (Gibco).  Seeds were surface sterilized by a 3 minutes incubation with 50 % ethanol, 0.5 % Triton X-100 followed by a brief rinse with 95 % ethanol.  Seeds were air-dried after surface sterilization.  Four Falcon grided deep Petri dishes of each genotype, aprox. 200 seeds per plate were used.  Petri dishes were cold treated (4 oC) for 48 h and then placed in a growth room [16 h day, 24 oC, 150 mE.m-2.s-1 (E, Einstein; 1 E = 1 mol of photons)] on a stand in a vertical orientation and left undisturbed.  After a week, total RNA was extracted with Trizol (Gibco) and further purified with RNeasy columns (Qiagen) following manufacturer instructions.  Total RNA was extracted from each genotype and, prior to target preparation, was mixed in equal proportions to make the 35S:AtRALF1-1 sample (35S:AtRALF1-1 = 35S:AtRALF1-1-I + 35S:AtRALF1-1-II).  Synthesis of double-stranded cDNA, biotin-labeled cRNA, cRNA fragmentation, hybridization, washing, staining and scanning were performed according to GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were performed at the Sequencing Laboratory (Washington State University).


title: 35S:AtRALF1-1 2nd repeat


title: liver, 48h starved, chip 6

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 4 animals (No. N7, N8, N9 and N10) fed during and before the 48h experiment with standard food, ad libitum; pool3 starved = 4 animals (No. St7, St8, St9 and St10) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp6_032


title: Control 1st repeat

description:
Arabidopsis seedlings (1 week-old ) were plated on 0.5 x MS salts and vitamins containing 6 g/L Phytagar (Gibco).  Seeds were surface sterilized by a 3 minutes incubation with 50 % ethanol, 0.5 % Triton X-100 followed by a brief rinse with 95 % ethanol.  Seeds were air-dried after surface sterilization.  Four Falcon grided deep Petri dishes of each genotype, aprox. 200 seeds per plate were used.  Petri dishes were cold treated (4 oC) for 48 h and then placed in a growth room [16 h day, 24 oC, 150 mE.m-2.s-1 (E, Einstein; 1 E = 1 mol of photons)] on a stand in a vertical orientation and left undisturbed.  After a week, total RNA was extracted with Trizol (Gibco) and further purified with RNeasy columns (Qiagen) following manufacturer instructions.  Total RNA was extracted from each genotype and, prior to target preparation, was mixed in equal proportions to make the control 1 sample [(Control 1= wild type + wild type transformed with the empty pART27 vector).  Synthesis of double-stranded cDNA, biotin-labeled cRNA, cRNA fragmentation, hybridization, washing, staining and scanning were performed according to GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were performed at the Sequencing Laboratory (Washington State University).
Keywords = AtRALF1-1, RALF, polypeptide


title: liver, 48h sugar, chip 6

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 48h experiment with standard food, ad libitum; pool1 sugar = 3 animals (No. Su1, Su2 and Su3) fed before the experiment with standard food, ad libitum, during the 48h experiment with 50% (w/v) sugar solution (40% glucose, 10% sucrose).
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp8_011

source_name: pool1 sugar


title: liver, 48h starved, chip 4

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 4 animals (No. N7, N8, N9 and N10) fed during and before the 48h experiment with standard food, ad libitum; pool3 starved = 4 animals (No. St7, St8, St9 and St10) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp6_030


title: liver, 48h starved, chip 3

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 4 animals (No. N7, N8, N9 and N10) fed during and before the 48h experiment with standard food, ad libitum; pool3 starved = 4 animals (No. St7, St8, St9 and St10) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp6_029


title: liver, 48h sugar, chip 7

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 48h experiment with standard food, ad libitum; pool1 sugar = 3 animals (No. Su1, Su2 and Su3) fed before the experiment with standard food, ad libitum, during the 48h experiment with 50% (w/v) sugar solution (40% glucose, 10% sucrose).
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp8_012

source_name: pool1 normal

source_name: pool1, sugar


title: liver, 48h sugar, chip 3

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool2 normal = 3 animals (No. N4, N5 and N6) fed during and before the 48h experiment with standard food, ad libitum; pool2 sugar = 3 animals (No. Su4, Su5 and Su6) fed before the experiment with standard food, ad libitum, during the 48h experiment with 50% (w/v) sugar solution (40% glucose, 10% sucrose).
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_058

source_name: pool2 normal

source_name: pool2, sugar


title: Nbrichardi11MaU-030210brain01 / Nbrichardi11MaU-030210body01 HYB p1.00s73b1NAH

status: Public on Feb 05 2004

city: Austin

first: Hans

middle: A.

last: Hofmann

address: 1 University Station - C0930

department: Section of Integrative Biology

institute: Universit of Texas at Austin

description:
Brain-Body experiments for Heterologous Hybridization Renn et al 2004.
Keywords = Cichlid Brain

organism: Neolamprologus brichardi

source_name: Nbrichardi11 brain

source_name: Nbrichardi11 body


title: liver, 48h sugar, chip 5

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 48h experiment with standard food, ad libitum; pool1 sugar = 3 animals (No. Su1, Su2 and Su3) fed before the experiment with standard food, ad libitum, during the 48h experiment with 50% (w/v) sugar solution (40% glucose, 10% sucrose).
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp8_010


title: liver, 48h starved, chip 10

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 48h experiment with standard food, ad libitum; pool1 starved = 3 animals (No. St1, St2 and St3) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_021


title: liver, 48h sugar, chip 12

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 4 animals (No. N7, N8, N9 and N10) fed during and before the 48h experiment with standard food, ad libitum; pool3 sugar = 4 animals (No. Su7, Su8, Su9 and Su10) fed before the experiment with standard food, ad libitum, during the 48h experiment with 50% (w/v) sugar solution (40% glucose, 10% sucrose).
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp8_017

source_name: pool3, sugar


title: liver, 48h starved, chip 1

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 4 animals (No. N7, N8, N9 and N10) fed during and before the 48h experiment with standard food, ad libitum; pool3 starved = 4 animals (No. St7, St8, St9 and St10) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp6_027


title: liver, 48h sugar, chip 11

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 4 animals (No. N7, N8, N9 and N10) fed during and before the 48h experiment with standard food, ad libitum; pool3 sugar = 4 animals (No. Su7, Su8, Su9 and Su10) fed before the experiment with standard food, ad libitum, during the 48h experiment with 50% (w/v) sugar solution (40% glucose, 10% sucrose).
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp8_016