title: spleenB1.3: C57BL/6J spleen time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as spleenB1.3, celfile RS010930MU17aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: heartA1.3: A/J heart time 1

status: Public on Feb 12 2005

type: RNA

city: Montreal

first: Peter

last: Lee

state: QC

address: 740 Dr Penfield

department: Dept of Human Genetics

country: Canada

institute: McGill University

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as heartA1.3, celfile AS020516MGA13aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J

molecule: total RNA

organism: Mus musculus

source_name: heart


title: spleenA2.1: A/J spleen time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as spleenA2.1, celfile YF040302MGA07.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J

source_name: spleen


title: liverB2.3: C57BL/6J liver time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as liverB2.3, celfile YF040302MGA06.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J

source_name: liver


title: lungA2.3: A/J lung time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as lungA2.3, celfile YF040302MGA17.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J

source_name: lung


title: Lens Epithelial Cells (Array 2)

status: Public on Feb 15 2005

city: Rochester

first: John

last: Hawse

state: MN

address: 200 1st St. SW

department: Biochemistry and Molecular Biology

country: USA

institute: Mayo Clinic

description: Raw Affymetrix microarray data for human lens epithelial cell RNA sample 2.

organism: Homo sapiens

source_name: Human lens epithelial cells


title: heartA2.3: A/J heart time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as heartA2.3, celfile YF040302MGA23.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: spleenB1.2: C57BL/6J spleen time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as spleenB1.2, celfile RS010930MU15aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: heartA1.1: A/J heart time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as heartA1.1, celfile AS020516MGA09aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: lungB2.2: C57BL/6J lung time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as lungB2.2, celfile YF040302MGA16.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: liverA1.1: A/J liver time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as liverA1.1, celfile RS010929MU08aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: lungA2.1: A/J lung time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as lungA2.1, celfile YF040302MGA13.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: lungA1.1: A/J lung time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as lungA1.1, celfile RS010929MU14aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: heartA2.2: A/J heart time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as heartA2.2, celfile YF040302MGA21.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: spleenB2.3: C57BL/6J spleen time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as spleenB2.3, celfile YF040302MGA12.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: heartB1.1: C57BL/6J heart time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as heartB1.1, celfile AS020516MGA08aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: lungA1.2: A/J lung time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as lungA1.2, celfile RS010929MU16aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: heartA2.1: A/J heart time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as heartA2.1, celfile YF040302MGA19.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: liverB2.2: C57BL/6J liver time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as liverB2.2, celfile YF040302MGA04.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: lungB1.3: C57BL/6J lung time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as lungB1.3, celfile RS010929MU17aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: Lens Cortical Fiber Cell (Array 1)

description: Raw Affymetrix microarray data for human lens cortical fiber cell RNA sample 1.

source_name: Human lens cortical fiber cells


title: spleenA1.2: A/J spleen time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as spleenA1.2, celfile RS010930MU16aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: liverA2.1: A/J liver time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as liverA2.1, celfile YF040302MGA01.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: liverB1.1: C57BL/6J liver time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as liverB1.1, celfile RS010929MU07aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: spleenB2.1: C57BL/6J spleen time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as spleenB2.1, celfile YF040302MGA08.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: spleenA2.2: A/J spleen time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as spleenA2.2, celfile YF040302MGA09.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: liverB1.3: C57BL/6J liver time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as liverB1.3, celfile RS010929MU11aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: lungA2.2: A/J lung time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as lungA2.2, celfile YF040302MGA15.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: lungB2.3: C57BL/6J lung time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as lungB2.3, celfile YF040302MGA18.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: spleenA1.3: A/J spleen time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as spleenA1.3, celfile RS010930MU18aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: spleenB1.1: C57BL/6J spleen time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as spleenB1.1, celfile RS010930MU13aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: heartB1.2: C57BL/6J heart time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as heartB1.2, celfile AS020516MGA10aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: spleenA2.3: A/J spleen time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as spleenA2.3, celfile YF040302MGA11.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: spleenB2.2: C57BL/6J spleen time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as spleenB2.2, celfile YF040302MGA10.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: lungB1.1: C57BL/6J lung time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as lungB1.1, celfile RS010929MU13aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: heartB2.2: C57BL/6J heart time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as heartB2.2, celfile YF040302MGA22.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: liverB1.2: C57BL/6J liver time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as liverB1.2, celfile RS010929MU09aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: liverA2.3: A/J liver time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as liverA2.3, celfile YF040302MGA05.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: liverA1.2: A/J liver time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as liverA1.2, celfile RS010929MU10aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: lungA1.3: A/J lung time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as lungA1.3, celfile RS010929MU18aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: lungB1.2: C57BL/6J lung time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as lungB1.2, celfile RS010929MU15aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: lungB2.1: C57BL/6J lung time 2

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as lungB2.1, celfile YF040302MGA14.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: Autoimmune pancreatic islets, day 3 cyclophosphamide treatment, rep 2

status: Public on Feb 09 2005

city: Boston

first: CBDM

last: Lab

state: MA

address: 77 Avenue Louis Pasteur

department: Microbiology and Immunobiology

institute: Harvard Medical School

description:
Infiltrated pancreatic islets of an autoimmune BDC2.5/NOD mouse. Time course of diabetes induction with Cyclophosphamide (day0 to day3). RNA prepared from purified islets (collagenase digestion, density separation, hand picking), amplified using Ambion protocol.
Keywords = type I diabetes
Keywords = cyclophosphamide
Keywords = BDC2.5
Keywords = NOD
Keywords = pancreas
Keywords = islets
Lot batch = jos0995x

source_name: pancreatic islets


title: Autoimmune pancreatic islets, day 2 cyclophosphamide treatment, Rep 1

description:
Infiltrated pancreatic islets of an autoimmune BDC2.5/NOD mouse. Time course of diabetes induction with Cyclophosphamide (day0 to day3). RNA prepared from purified islets (collagenase digestion, density separation, hand picking), amplified using Ambion protocol.
Keywords = type I diabetes
Keywords = cyclophosphamide
Keywords = BDC2.5
Keywords = NOD
Keywords = pancreas
Keywords = islets
Lot batch = jos1074


title: Autoimmune pancreatic islets, day 2 cyclophosphamide treatment, rep 2

description:
Infiltrated pancreatic islets of an autoimmune BDC2.5/NOD mouse. Time course of diabetes induction with Cyclophosphamide (day0 to day3). RNA prepared from purified islets (collagenase digestion, density separation, hand picking), amplified using Ambion protocol.
Keywords = type I diabetes
Keywords = cyclophosphamide
Keywords = BDC2.5
Keywords = NOD
Keywords = pancreas
Keywords = islets
Lot batch = jos1075


title: Autoimmune pancreatic islets, day 3 cyclophosphamide treatment, rep 1

description:
Infiltrated pancreatic islets of an autoimmune BDC2.5/NOD mouse. Time course of diabetes induction with Cyclophosphamide (day0 to day3). RNA prepared from purified islets (collagenase digestion, density separation, hand picking), amplified using Ambion protocol.
Keywords = type I diabetes
Keywords = cyclophosphamide
Keywords = BDC2.5
Keywords = NOD
Keywords = pancreas
Keywords = islets
Lot batch = m2


title: Autoimmune pancreatic islets, day 1 cyclophosphamide treatment, rep 2

description:
Infiltrated pancreatic islets of an autoimmune BDC2.5/NOD mouse. Time course of diabetes induction with Cyclophosphamide (day0 to day3). RNA prepared from purified islets (collagenase digestion, density separation, hand picking), amplified using Ambion protocol.
Keywords = type I diabetes
Keywords = cyclophosphamide
Keywords = BDC2.5
Keywords = NOD
Keywords = pancreas
Keywords = islets
Lot batch = jos1150


title: Autoimmune pancreatic islets, day 2 cyclophosphamide treatment, rep 3

description:
Infiltrated pancreatic islets of an autoimmune BDC2.5/NOD mouse. Time course of diabetes induction with Cyclophosphamide (day0 to day3). RNA prepared from purified islets (collagenase digestion, density separation, hand picking), amplified using Ambion protocol.
Keywords = type I diabetes
Keywords = cyclophosphamide
Keywords = BDC2.5
Keywords = NOD
Keywords = pancreas
Keywords = islets
Lot batch = jos1217


title: Autoimmune pancreatic islets, day 1 cyclophosphamide treatment, rep 4

description:
Infiltrated pancreatic islets of an autoimmune BDC2.5/NOD mouse. Time course of diabetes induction with Cyclophosphamide (day0 to day3). RNA prepared from purified islets (collagenase digestion, density separation, hand picking), amplified using Ambion protocol.
Keywords = type I diabetes
Keywords = cyclophosphamide
Keywords = BDC2.5
Keywords = NOD
Keywords = pancreas
Keywords = islets
Lot batch = jos1172


title: ATH whole genome chip 11

status: Public on Feb 10 2005

city: Moffett Field

first: Waraporn

last: Tongprasit

state: CA

institute: NASA Ames Research Center

description: Identification of novel transcribed sequences in Arabidopsis thaliana using high density genome tiling arrays.

organism: Arabidopsis thaliana

source_name: T87 line of liquid grown tissue culture cells of Arabidopsis thaliana


title: Autoimmune pancreatic islets, day 3 cyclophosphamide treatment, rep 3

description:
Infiltrated pancreatic islets of an autoimmune BDC2.5/NOD mouse. Time course of diabetes induction with Cyclophosphamide (day0 to day3). RNA prepared from purified islets (collagenase digestion, density separation, hand picking), amplified using Ambion protocol.
Keywords = type I diabetes
Keywords = cyclophosphamide
Keywords = BDC2.5
Keywords = NOD
Keywords = pancreas
Keywords = islets
Lot batch = jos1218


title: aCGH:98-10708-A2-Melanoma (DNA from PAP)(Male)

type: genomic

city: Stanford

last: Stanford Microarray Database

address: 300 Pasteur Drive

department: Stanford University, School of Medicine

institute: Stanford Microarray Database (SMD)

description:
Simple annotation: aCGH, aCGH tumor tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/35273.gif

molecule: genomic DNA

source_name: Cy3 - XY DNA

source_name: Cy5 - 98-10708-A2-Melanoma (DNA from PAP)(Male)


title: Autoimmune pancreatic islets, no cyclophosphamide treatment, rep 7

description:
Infiltrated pancreatic islets of an autoimmune BDC2.5/NOD mouse. Time course of diabetes induction with Cyclophosphamide (day0 to day3). RNA prepared from purified islets (collagenase digestion, density separation, hand picking), amplified using Ambion protocol.
Keywords = type I diabetes
Keywords = cyclophosphamide
Keywords = BDC2.5
Keywords = NOD
Keywords = pancreas
Keywords = islets
Lot batch = jos1170


title: ATH whole genome chip 6


title: Autoimmune pancreatic islets, no cyclophosphamide treatment, rep 6

description:
Infiltrated pancreatic islets of an autoimmune BDC2.5/NOD mouse. Time course of diabetes induction with Cyclophosphamide (day0 to day3). RNA prepared from purified islets (collagenase digestion, density separation, hand picking), amplified using Ambion protocol.
Keywords = type I diabetes
Keywords = cyclophosphamide
Keywords = BDC2.5
Keywords = NOD
Keywords = pancreas
Keywords = islets
Lot batch = jos1149


title: aCGH:DT92-10098-B-Spitz (DNA from PAR)(Female)

description:
Simple annotation: aCGH, aCGH tumor tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-01/35276.gif

source_name: Cy3 - XX DNA

source_name: Cy5 - DT92-10098-B-Spitz (DNA from PAP)(Female)


title: Autoimmune pancreatic islets, day 1 cyclophosphamide treatment, rep 3

description:
Infiltrated pancreatic islets of an autoimmune BDC2.5/NOD mouse. Time course of diabetes induction with Cyclophosphamide (day0 to day3). RNA prepared from purified islets (collagenase digestion, density separation, hand picking), amplified using Ambion protocol.
Keywords = type I diabetes
Keywords = cyclophosphamide
Keywords = BDC2.5
Keywords = NOD
Keywords = pancreas
Keywords = islets
Lot batch = jos1171


title: heartB1.3: C57BL/6J heart time 1

description:
RNA was extracted from tissue rapidly dissected and homogenized in Trizol reagent. Targets were produced using standard Affymetrix procedures from about 20ug of total RNA.  3 biological replicates (3-month old male littermates) were analyzed for each tissue at each time.
This sample is also known as heartB1.3, celfile AS020516MGA12aa.CEL
Keywords = Mouse, Mus musculus, heart, A/J, C57BL/6J


title: ATH whole genome chip 13


title: Autoimmune pancreatic islets, no cyclophosphamide treatment, rep 8

description:
Infiltrated pancreatic islets of an autoimmune BDC2.5/NOD mouse. Time course of diabetes induction with Cyclophosphamide (day0 to day3). RNA prepared from purified islets (collagenase digestion, density separation, hand picking), amplified using Ambion protocol.
Keywords = type I diabetes
Keywords = cyclophosphamide
Keywords = BDC2.5
Keywords = NOD
Keywords = pancreas
Keywords = islets
Lot batch = jos1216


title: Autoimmune pancreatic islets, day 1 cyclophosphamide treatment, rep 1

description:
Infiltrated pancreatic islets of an autoimmune BDC2.5/NOD mouse. Time course of diabetes induction with Cyclophosphamide (day0 to day3). RNA prepared from purified islets (collagenase digestion, density separation, hand picking), amplified using Ambion protocol.
Keywords = type I diabetes
Keywords = cyclophosphamide
Keywords = BDC2.5
Keywords = NOD
Keywords = pancreas
Keywords = islets
Lot batch = jos1061


title: aCGH:00-2072-A3-Spitz(DNA from PAP)(Male)

description:
Simple annotation: aCGH, aCGH tumor tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-01/36320.gif
Sample_scan_protocol = Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.33; Parameter Scan Time = 13:25:47; Parameter PMT Volts = 520; Parameter Scan Date = 2002-12-18; Parameter Pixel Size = 10; Parameter Laser on time = 45953; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 4.34; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Matt,,Van De Rijn
Sample_scan_protocol = Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.33; Parameter Scan Time = 13:25:47; Parameter PMT Volts = 690; Parameter Scan Date = 2002-12-18; Parameter Pixel Size = 10; Parameter Laser on time = 264948; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.03; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Matt,,Van De Rijn


title: ATH whole genome chip 7


title: aCGH:DT01-22868-Spitz (DNA from PAR)(Male)

description:
Simple annotation: aCGH, aCGH tumor tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/35277.gif

source_name: Cy5 - DT01-22868-Spitz (DNA from PAP)(Male)


title: Autoimmune pancreatic islets, no cyclophosphamide treatment, rep 5

description:
Infiltrated pancreatic islets of an autoimmune BDC2.5/NOD mouse. Time course of diabetes induction with Cyclophosphamide (day0 to day3). RNA prepared from purified islets (collagenase digestion, density separation, hand picking), amplified using Ambion protocol.
Keywords = type I diabetes
Keywords = cyclophosphamide
Keywords = BDC2.5
Keywords = NOD
Keywords = pancreas
Keywords = islets
Lot batch = jos1060


title: aCGH:00-15541-2-Spitz(DNA from PAP)(Female)

description:
Simple annotation: aCGH, aCGH tumor tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-01/36319.gif
Sample_scan_protocol = Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.27; Parameter Scan Time = 14:14:32; Parameter PMT Volts = 510; Parameter Scan Date = 2002-12-18; Parameter Pixel Size = 10; Parameter Laser on time = 46001; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 4.65; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Matt,,Van De Rijn
Sample_scan_protocol = Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.27; Parameter Scan Time = 14:14:32; Parameter PMT Volts = 690; Parameter Scan Date = 2002-12-18; Parameter Pixel Size = 10; Parameter Laser on time = 264996; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.03; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Matt,,Van De Rijn


title: LPS 6hr Rat #6 fluor

city: Durham

first: Rick

middle: David

last: Fannin

state: NC

address: 111 T.W. Alexander Drive

department: Office of the Director

institute: The National Institute of Environmental Health Sciences

description: LPS 6hr Rat #6 fluor

organism: Rattus norvegicus

source_name: Control Pool 6hr LPS

source_name: LPS 6hr Rat #6


title: ATH whole genome chip 12


title: ATH whole genome chip 8


title: ATH whole genome chip 9


title: ATH whole genome chip 4


title: ATH whole genome chip 5


title: Autoimmune pancreatic islets before cyclophosphamide treatment, rep 2

description:
Infiltrated pancreatic islets of an autoimmune BDC2.5/NOD mouse. Time course of diabetes induction with Cyclophosphamide (day0 to day3). RNA prepared from purified islets (collagenase digestion, density separation, hand picking), amplified using Ambion protocol.
Keywords = type I diabetes
Keywords = cyclophosphamide
Keywords = BDC2.5
Keywords = NOD
Keywords = pancreas
Keywords = islets
Lot batch = jos1072


title: LPS 6hr Rat #4 fluor

description: LPS 6hr Rat #4 fluor

source_name: LPS 6hr Rat #4


title: Autoimmune pancreatic islets before cyclophosphamide treatment, rep3

description:
Infiltrated pancreatic islets of an autoimmune BDC2.5/NOD mouse. Time course of diabetes induction with Cyclophosphamide (day0 to day3). RNA prepared from purified islets (collagenase digestion, density separation, hand picking), amplified using Ambion protocol.
Keywords = type I diabetes
Keywords = cyclophosphamide
Keywords = BDC2.5
Keywords = NOD
Keywords = pancreas
Keywords = islets
Lot batch = jos1073


title: ATH whole genome chip 10


title: aCGH:02-35796-Spitz(DNA from PAP)(Female)

description:
Simple annotation: aCGH, aCGH tumor tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-01/36317.gif
Sample_scan_protocol = Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.21; Parameter Scan Time = 13:40:27; Parameter PMT Volts = 530; Parameter Scan Date = 2002-12-18; Parameter Pixel Size = 10; Parameter Laser on time = 45967; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 4.52; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Matt,,Van De Rijn
Sample_scan_protocol = Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.21; Parameter Scan Time = 13:40:27; Parameter PMT Volts = 690; Parameter Scan Date = 2002-12-18; Parameter Pixel Size = 10; Parameter Laser on time = 264962; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.02; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Matt,,Van De Rijn

source_name: Cy5 - 02-35796-Spitz(Female)


title: ATH whole genome chip 2

description: Identification of novel transcribed sequences in Arabidopsis thaliana using high density genome tiling arrays.


title: LPS 2hr Rat #1 flip

description: LPS 2hr Rat #1 flip

source_name: LPS 2hr Rat #1

source_name: Control Pool 2hr LPS


title: LPS 2hr Rat #3 flip

description: LPS 2hr Rat #3 flip

source_name: LPS 2hr Rat #3


title: LPS 6hr Rat #2 flip

description: LPS 6hr Rat #2 flip

source_name: LPS 6hr Rat #2


title: LPS 2hr Rat #2 flip

description: LPS 2hr Rat #2 flip

source_name: LPS 2hr Rat #2


title: LPS 6hr Rat #6 flip

description: LPS 6hr Rat #6 flip


title: Autoimmune pancreatic islets, no cyclophosphamide treatment, rep 1

description:
Infiltrated pancreatic islets of an autoimmune BDC2.5/NOD mouse. Time course of diabetes induction with Cyclophosphamide (day0 to day3). RNA prepared from purified islets (collagenase digestion, density separation, hand picking), amplified using Ambion protocol.
Keywords = type I diabetes
Keywords = cyclophosphamide
Keywords = BDC2.5
Keywords = NOD
Keywords = pancreas
Keywords = islets
Lot batch = jos0995


title: aCGH:01-18037-A4-Melanoma (DNA from PAP)(Male)

description:
Simple annotation: aCGH, aCGH tumor tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-01/35274.gif

source_name: Cy5 - 01-18037-A4-Melanoma (DNA from PAP)(Male)


title: LPS 2hr Rat #2 fluor

description: LPS 2hr Rat #2 fluor


title: LPs 6hr Rat #2 fluor

description: LPS 6hr Rat #2 fluor


title: LPS 2hr Rat #3 fluor

description: LPS 2hr Rat #3 fluor


title: PCL-007

status: Public on Feb 08 2005

city: MILAN

first: Luca

last: Agnelli

address: Venezian 1

department: Department of Advanced Diagnostics

country: Italy

institute: IRCCS Istituto Nazionale dei Tumori

description:
gene expression profiles of purified plasma cells (PCs) obtained from a plasma-cell leukemia patient (MM). PCs were purified from bone marrow samples, after red blood cell lysis with 0.86% ammonium chloride, using CD138 immunomagnetic microbeads. The purity of the positively selected PCs (93%) was assessed by morphology and flow cytometry. 5 micrograms of total RNA was processed and hybridized to the Affymetrix HG-U133A chip following the manufacturer's instructions. After scanning, the image was processed using Affymetrix MicroArray Suite (MAS) 5.0 software to generate gene expression intensity values. Arrays normalization was performed normalizing the signals to the target intensity of TGT=100.
Keywords = Gene expression profiling
Keywords = IGH translocations
Keywords = MGUS
Keywords = Multiple Myeloma
Keywords = Plasma Cell Leukemia

source_name: CD138+ plasma cells obtained from bone marrow of PCL patient


title: LPS 6hr Rat #4 flip

description: LPS 6hr Rat #4 flip


title: PCL-004

description:
gene expression profiles of purified plasma cells (PCs) obtained from a plasma-cell leukemia patient (MM). PCs were purified from bone marrow samples, after red blood cell lysis with 0.86% ammonium chloride, using CD138 immunomagnetic microbeads. The purity of the positively selected PCs (99%) was assessed by morphology and flow cytometry. 5 micrograms of total RNA was processed and hybridized to the Affymetrix HG-U133A chip following the manufacturer's instructions. After scanning, the image was processed using Affymetrix MicroArray Suite (MAS) 5.0 software to generate gene expression intensity values. Arrays normalization was performed normalizing the signals to the target intensity of TGT=100.
Keywords = Gene expression profiling
Keywords = IGH translocations
Keywords = MGUS
Keywords = Multiple Myeloma
Keywords = Plasma Cell Leukemia


title: Autoimmune pancreatic islets before cyclophosphamide treatment, rep 4

source_name: pancreatic islets


title: LPS 2hr Rat #1 fluor

description: LPS 2hr Rat #1 fluor


title: PCL-001


title: PCL-006


title: aCGH:01-17699-A5-Melanoma (DNA from PAP)(Male)

description:
Simple annotation: aCGH, aCGH tumor tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-01/35275.gif

source_name: Cy3 - XY DNA

source_name: Cy5 - 01-17699-A5-Melanoma (DNA from PAP)(Male)


title: MM-055

description:
gene expression profiles of purified plasma cells (PCs) obtained from a multiple myeloma patient (MM). PCs were purified from bone marrow samples, after red blood cell lysis with 0.86% ammonium chloride, using CD138 immunomagnetic microbeads. The purity of the positively selected PCs (96%) was assessed by morphology and flow cytometry. 5 micrograms of total RNA was processed and hybridized to the Affymetrix HG-U133A chip following the manufacturer's instructions. After scanning, the image was processed using Affymetrix MicroArray Suite (MAS) 5.0 software to generate gene expression intensity values. Arrays normalization was performed normalizing the signals to the target intensity of TGT=100.
Keywords = Gene expression profiling
Keywords = IGH translocations
Keywords = MGUS
Keywords = Multiple Myeloma
Keywords = Plasma Cell Leukemia

source_name: CD138+ plasma cells obtained from bone marrow of MM patient


title: ATH whole genome chip 1

source_name: T87 line of liquid grown tissue culture cells of Arabidopsis thaliana


title: MM-064

description:
gene expression profiles of purified plasma cells (PCs) obtained from a multiple myeloma patient (MM). PCs were purified from bone marrow samples, after red blood cell lysis with 0.86% ammonium chloride, using CD138 immunomagnetic microbeads. The purity of the positively selected PCs (90%) was assessed by morphology and flow cytometry. 5 micrograms of total RNA was processed and hybridized to the Affymetrix HG-U133A chip following the manufacturer's instructions. After scanning, the image was processed using Affymetrix MicroArray Suite (MAS) 5.0 software to generate gene expression intensity values. Arrays normalization was performed normalizing the signals to the target intensity of TGT=100.
Keywords = Gene expression profiling
Keywords = IGH translocations
Keywords = MGUS
Keywords = Multiple Myeloma
Keywords = Plasma Cell Leukemia


title: MM-063

description:
gene expression profiles of purified plasma cells (PCs) obtained from a multiple myeloma patient (MM). PCs were purified from bone marrow samples, after red blood cell lysis with 0.86% ammonium chloride, using CD138 immunomagnetic microbeads. The purity of the positively selected PCs (94%) was assessed by morphology and flow cytometry. 5 micrograms of total RNA was processed and hybridized to the Affymetrix HG-U133A chip following the manufacturer's instructions. After scanning, the image was processed using Affymetrix MicroArray Suite (MAS) 5.0 software to generate gene expression intensity values. Arrays normalization was performed normalizing the signals to the target intensity of TGT=100.
Keywords = Gene expression profiling
Keywords = IGH translocations
Keywords = MGUS
Keywords = Multiple Myeloma
Keywords = Plasma Cell Leukemia


title: MM-043


title: MM-068


title: MM-048

description:
gene expression profiles of purified plasma cells (PCs) obtained from a multiple myeloma patient (MM). PCs were purified from bone marrow samples, after red blood cell lysis with 0.86% ammonium chloride, using CD138 immunomagnetic microbeads. The purity of the positively selected PCs (92%) was assessed by morphology and flow cytometry. 5 micrograms of total RNA was processed and hybridized to the Affymetrix HG-U133A chip following the manufacturer's instructions. After scanning, the image was processed using Affymetrix MicroArray Suite (MAS) 5.0 software to generate gene expression intensity values. Arrays normalization was performed normalizing the signals to the target intensity of TGT=100.
Keywords = Gene expression profiling
Keywords = IGH translocations
Keywords = MGUS
Keywords = Multiple Myeloma
Keywords = Plasma Cell Leukemia


title: MM-047

description:
gene expression profiles of purified plasma cells (PCs) obtained from a multiple myeloma patient (MM). PCs were purified from bone marrow samples, after red blood cell lysis with 0.86% ammonium chloride, using CD138 immunomagnetic microbeads. The purity of the positively selected PCs (95%) was assessed by morphology and flow cytometry. 5 micrograms of total RNA was processed and hybridized to the Affymetrix HG-U133A chip following the manufacturer's instructions. After scanning, the image was processed using Affymetrix MicroArray Suite (MAS) 5.0 software to generate gene expression intensity values. Arrays normalization was performed normalizing the signals to the target intensity of TGT=100.
Keywords = Gene expression profiling
Keywords = IGH translocations
Keywords = MGUS
Keywords = Multiple Myeloma
Keywords = Plasma Cell Leukemia


title: MM-050


title: MM-066


title: MM-039

description:
gene expression profiles of purified plasma cells (PCs) obtained from a multiple myeloma patient (MM). PCs were purified from bone marrow samples, after red blood cell lysis with 0.86% ammonium chloride, using CD138 immunomagnetic microbeads. The purity of the positively selected PCs (98%) was assessed by morphology and flow cytometry. 5 micrograms of total RNA was processed and hybridized to the Affymetrix HG-U133A chip following the manufacturer's instructions. After scanning, the image was processed using Affymetrix MicroArray Suite (MAS) 5.0 software to generate gene expression intensity values. Arrays normalization was performed normalizing the signals to the target intensity of TGT=100.
Keywords = Gene expression profiling
Keywords = IGH translocations
Keywords = MGUS
Keywords = Multiple Myeloma
Keywords = Plasma Cell Leukemia


title: MM-052

description:
gene expression profiles of purified plasma cells (PCs) obtained from a multiple myeloma patient (MM). PCs were purified from bone marrow samples, after red blood cell lysis with 0.86% ammonium chloride, using CD138 immunomagnetic microbeads. The purity of the positively selected PCs (91%) was assessed by morphology and flow cytometry. 5 micrograms of total RNA was processed and hybridized to the Affymetrix HG-U133A chip following the manufacturer's instructions. After scanning, the image was processed using Affymetrix MicroArray Suite (MAS) 5.0 software to generate gene expression intensity values. Arrays normalization was performed normalizing the signals to the target intensity of TGT=100.
Keywords = Gene expression profiling
Keywords = IGH translocations
Keywords = MGUS
Keywords = Multiple Myeloma
Keywords = Plasma Cell Leukemia


title: MM-072


title: MM-067


title: MM-056


title: MM-040


title: MM-054


title: PCL-005


title: PCL-002

description:
gene expression profiles of purified plasma cells (PCs) obtained from a plasma-cell leukemia patient (MM). PCs were purified from bone marrow samples, after red blood cell lysis with 0.86% ammonium chloride, using CD138 immunomagnetic microbeads. The purity of the positively selected PCs (95%) was assessed by morphology and flow cytometry. 5 micrograms of total RNA was processed and hybridized to the Affymetrix HG-U133A chip following the manufacturer's instructions. After scanning, the image was processed using Affymetrix MicroArray Suite (MAS) 5.0 software to generate gene expression intensity values. Arrays normalization was performed normalizing the signals to the target intensity of TGT=100.
Keywords = Gene expression profiling
Keywords = IGH translocations
Keywords = MGUS
Keywords = Multiple Myeloma
Keywords = Plasma Cell Leukemia


title: MM-037


title: MM-070


title: ATH whole genome chip 3


title: MM-038

description:
gene expression profiles of purified plasma cells (PCs) obtained from a multiple myeloma patient (MM). PCs were purified from bone marrow samples, after red blood cell lysis with 0.86% ammonium chloride, using CD138 immunomagnetic microbeads. The purity of the positively selected PCs (99%) was assessed by morphology and flow cytometry. 5 micrograms of total RNA was processed and hybridized to the Affymetrix HG-U133A chip following the manufacturer's instructions. After scanning, the image was processed using Affymetrix MicroArray Suite (MAS) 5.0 software to generate gene expression intensity values. Arrays normalization was performed normalizing the signals to the target intensity of TGT=100.
Keywords = Gene expression profiling
Keywords = IGH translocations
Keywords = MGUS
Keywords = Multiple Myeloma
Keywords = Plasma Cell Leukemia


title: MM-033


title: MM-069

description:
gene expression profiles of purified plasma cells (PCs) obtained from a multiple myeloma patient (MM). PCs were purified from bone marrow samples, after red blood cell lysis with 0.86% ammonium chloride, using CD138 immunomagnetic microbeads. The purity of the positively selected PCs (97%) was assessed by morphology and flow cytometry. 5 micrograms of total RNA was processed and hybridized to the Affymetrix HG-U133A chip following the manufacturer's instructions. After scanning, the image was processed using Affymetrix MicroArray Suite (MAS) 5.0 software to generate gene expression intensity values. Arrays normalization was performed normalizing the signals to the target intensity of TGT=100.
Keywords = Gene expression profiling
Keywords = IGH translocations
Keywords = MGUS
Keywords = Multiple Myeloma
Keywords = Plasma Cell Leukemia


title: MM-034


title: MM-045


title: MM-049

description:
gene expression profiles of purified plasma cells (PCs) obtained from a multiple myeloma patient (MM). PCs were purified from bone marrow samples, after red blood cell lysis with 0.86% ammonium chloride, using CD138 immunomagnetic microbeads. The purity of the positively selected PCs (93%) was assessed by morphology and flow cytometry. 5 micrograms of total RNA was processed and hybridized to the Affymetrix HG-U133A chip following the manufacturer's instructions. After scanning, the image was processed using Affymetrix MicroArray Suite (MAS) 5.0 software to generate gene expression intensity values. Arrays normalization was performed normalizing the signals to the target intensity of TGT=100.
Keywords = Gene expression profiling
Keywords = IGH translocations
Keywords = MGUS
Keywords = Multiple Myeloma
Keywords = Plasma Cell Leukemia


title: MM-026


title: MM-019


title: MM-014


title: MM-027


title: MM-031


title: MM-036


title: MGUS-026

description:
gene expression profiles of purified plasma cells (PCs) obtained from a monoclonal gammopathy of undetermined significance (MGUS). PCs were purified from bone marrow samples, after red blood cell lysis with 0.86% ammonium chloride, using CD138 immunomagnetic microbeads. The purity of the positively selected PCs (90%) was assessed by morphology and flow cytometry. 5 micrograms of total RNA was processed and hybridized to the Affymetrix HG-U133A chip following the manufacturer's instructions. After scanning, the image was processed using Affymetrix MicroArray Suite (MAS) 5.0 software to generate gene expression intensity values. Arrays normalization was performed normalizing the signals to the target intensity of TGT=100.
Keywords = Gene expression profiling
Keywords = IGH translocations
Keywords = MGUS
Keywords = Multiple Myeloma
Keywords = Plasma Cell Leukemia

source_name: CD138+ plasma cells obtained from bone marrow of MGUS patient


title: MM-021


title: MM-015


title: MM-035


title: MM-042


title: MGUS-008

description:
gene expression profiles of purified plasma cells (PCs) obtained from a monoclonal gammopathy of undetermined significance (MGUS). PCs were purified from bone marrow samples, after red blood cell lysis with 0.86% ammonium chloride, using CD138 immunomagnetic microbeads. The purity of the positively selected PCs (95%) was assessed by morphology and flow cytometry. 5 micrograms of total RNA was processed and hybridized to the Affymetrix HG-U133A chip following the manufacturer's instructions. After scanning, the image was processed using Affymetrix MicroArray Suite (MAS) 5.0 software to generate gene expression intensity values. Arrays normalization was performed normalizing the signals to the target intensity of TGT=100.
Keywords = Gene expression profiling
Keywords = IGH translocations
Keywords = MGUS
Keywords = Multiple Myeloma
Keywords = Plasma Cell Leukemia


title: MM-016


title: MM-032


title: MM-025


title: MM-030


title: MGUS-017


title: MM-004


title: Allograft

first: Andrew

last: Brooks

state: NY

institute: University of Rochester Medical Center

description: Allograft sample from c57Bl/6 Femur

source_name: Murine Bone


title: MGUS-019


title: heart/muscle-specific MnSOD-deficient mouse (d/d)

status: Public on Feb 06 2005

city: Itabashi-ku

first: Takuji

last: Shirasawa

state: Tokyo

department: Molecular Gerontology

country: Japan

institute: Tokyo Metropolitan Institute of Gerontology

description:
In order to investigate the physiological as well as pathological role of MnSOD in the heart and muscle, we generated conditional MnSOD knockout mice using the Cre-loxP system.
We used MCK-Cre transgenic mice for the selective expression of Cre protein in muscle tissues as shown previously. Crossbreeding of homozygous MnSOD flox mice (flox/flox, f/f) with MCK-Cre transgenic mice gave rise to heart/muscle-specific MnSOD-deficient mice (del/del, d/d).
Keywords = Mn-SOD
Keywords = manganese superoxide dismutase
Keywords = knockout
Keywords = heart failure
Keywords = heart
Keywords = muscle

source_name: muscle


description:
In order to investigate the physiological as well as pathological role of MnSOD in the heart and muscle, we generated conditional MnSOD knockout mice using the Cre-loxP system.

We used MCK-Cre transgenic mice for the selective expression of Cre protein in muscle tissues as shown previously. Crossbreeding of homozygous MnSOD flox mice
(flox/flox, f/f) with MCK-Cre transgenic mice gave rise to heart/muscle-specific MnSOD-deficient mice (del/del, d/d).

Keywords = Mn-SOD
Keywords = manganese superoxide dismutase
Keywords = knockout
Keywords = heart failure
Keywords = heart
Keywords = muscle

source_name: heart


title: Autograft

description: Autograft sample from c57Bl/6 Femur


title: MGUS-020

description:
gene expression profiles of purified plasma cells (PCs) obtained from a monoclonal gammopathy of undetermined significance (MGUS). PCs were purified from bone marrow samples, after red blood cell lysis with 0.86% ammonium chloride, using CD138 immunomagnetic microbeads. The purity of the positively selected PCs (92%) was assessed by morphology and flow cytometry. 5 micrograms of total RNA was processed and hybridized to the Affymetrix HG-U133A chip following the manufacturer's instructions. After scanning, the image was processed using Affymetrix MicroArray Suite (MAS) 5.0 software to generate gene expression intensity values. Arrays normalization was performed normalizing the signals to the target intensity of TGT=100.
Keywords = Gene expression profiling
Keywords = IGH translocations
Keywords = MGUS
Keywords = Multiple Myeloma
Keywords = Plasma Cell Leukemia


title: .24 mM H2O2- 070 minutes

status: Public on Feb 04 2005

city: Palo Alto

first: Michael

last: Shapira

address: 300 Pasteur Dr. Lane Bldg. room L309

department: Genetics

institute: Stanford University

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21638.gif

organism: Saccharomyces cerevisiae

source_name: Cy3: Yeast asynchronous 0.7OD mixed batch culture

source_name: Cy5: "Alpha factor synchronized cells, X minutes after release "


title: .24 mM H2O2- 085 minutes

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21639.gif


title: H2O2_II_21_min

description:
Simple annotation: Oxidative stress, H2O2
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40980.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.42; Parameter Scan Time = 13:41:07; Parameter PMT Volts = 520; Parameter Scan Date = 2003-05-03; Parameter Pixel Size = 10; Parameter Laser on time = 20792; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.69; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.42; Parameter Scan Time = 13:41:07; Parameter PMT Volts = 720; Parameter Scan Date = 2003-05-03; Parameter Pixel Size = 10; Parameter Laser on time = 19513; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.10; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy3: DBY8724-usynchronous culture- 1.2e7 cells/ml

source_name: Cy5: DBY8724- synchronous culture- 21 min after release from G1 arrest


title: MGUS-015


title: MGUS-005


title: .24 mM H2O2- 155 minutes

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21634.gif


title: heart/muscle-specific MnSOD-deficient mouse (f/f)(control)


title: H2O2_II_35_min

description:
Simple annotation: Oxidative stress, H2O2
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40949.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.37; Parameter Scan Time = 17:19:18; Parameter PMT Volts = 520; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 20288; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 2.90; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.37; Parameter Scan Time = 17:19:18; Parameter PMT Volts = 800; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 19010; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.09; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-35 min after release from G1 arrest


title: .24 mM H2O2- 020 minutes/redo

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21665.gif


title: .24 mM H2O2- 250 minutes

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21632.gif


title: .24 mM H2O2- 063 minutes/redo

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21663.gif


title: .24 mM H2O2- 055 minutes

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21666.gif


title: .24 mM H2O2- 0 minutes

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21635.gif


title: .24 mM H2O2- 230 minutes

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21662.gif


title: .24 mM H2O2- 049 minutes/redo

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21661.gif


title: .24 mM H2O2- 190 minutes

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21631.gif


title: .24 mM H2O2- 105 minutes

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21628.gif


title: .24 mM H2O2- 170 minutes/redo

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21664.gif


title: H2O2_II_7_min

description:
Simple annotation: Oxidative stress, H2O2
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40946.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.79; Parameter Scan Time = 16:03:01; Parameter PMT Volts = 530; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 20212; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.42; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.79; Parameter Scan Time = 16:03:01; Parameter PMT Volts = 720; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 18934; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.10; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture- 7 min after release from G1 arrest


title: H2O2_II_14_min

description:
Simple annotation: Oxidative stress, H2O2
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40947.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.27; Parameter Scan Time = 13:30:44; Parameter PMT Volts = 500; Parameter Scan Date = 2003-05-03; Parameter Pixel Size = 10; Parameter Laser on time = 20782; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 2.89; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.27; Parameter Scan Time = 13:30:44; Parameter PMT Volts = 680; Parameter Scan Date = 2003-05-03; Parameter Pixel Size = 10; Parameter Laser on time = 19503; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.10; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture- 14 min after release from G1 arrest


title: H2O2_II_28_min

description:
Simple annotation: Oxidative stress, H2O2
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40948.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.91; Parameter Scan Time = 14:16:15; Parameter PMT Volts = 550; Parameter Scan Date = 2003-05-03; Parameter Pixel Size = 10; Parameter Laser on time = 20826; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.40; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.91; Parameter Scan Time = 14:16:15; Parameter PMT Volts = 770; Parameter Scan Date = 2003-05-03; Parameter Pixel Size = 10; Parameter Laser on time = 19548; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.10; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture- 28 min after release from G1 arrest


title: MD_II_140_min

description:
Simple annotation: Oxidative stress, Menadione
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40976.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.80; Parameter Scan Time = 16:15:19; Parameter PMT Volts = 550; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 20621; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.54; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.80; Parameter Scan Time = 16:15:19; Parameter PMT Volts = 800; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 19342; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.14; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-140 min after release from G1 arrest


title: MD_II_120_min

description:
Simple annotation: Oxidative stress, Menadione
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40974.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.74; Parameter Scan Time = 15:54:24; Parameter PMT Volts = 550; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 20600; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.55; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.74; Parameter Scan Time = 15:54:24; Parameter PMT Volts = 790; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 19321; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.13; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-120 min after release from G1 arrest


title: MD_II_130_min

description:
Simple annotation: Oxidative stress, Menadione
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40975.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.77; Parameter Scan Time = 16:04:55; Parameter PMT Volts = 550; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 20610; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.59; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.77; Parameter Scan Time = 16:04:55; Parameter PMT Volts = 800; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 19331; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.14; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-130 min after release from G1 arrest


title: .24 mM H2O2- 120 minutes

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21660.gif


title: MD_II_85_min

description:
Simple annotation: Oxidative stress, Menadione
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40972.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.71; Parameter Scan Time = 15:32:47; Parameter PMT Volts = 590; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 20577; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.48; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.71; Parameter Scan Time = 15:32:47; Parameter PMT Volts = 820; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 19299; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.13; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-85 min after release from G1 arrest


title: MD_II_77_min

description:
Simple annotation: Oxidative stress, Menadione
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40971.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.64; Parameter Scan Time = 15:23:16; Parameter PMT Volts = 500; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 20569; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.46; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.64; Parameter Scan Time = 15:23:16; Parameter PMT Volts = 730; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 19290; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.13; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-77 min after release from G1 arrest


title: .24 mM H2O2- 014 minutes

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21655.gif


title: .24 mM H2O2- 063 minutes

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21657.gif


title: MD_II_56_min

description:
Simple annotation: Oxidative stress, Menadione
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40969.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.55; Parameter Scan Time = 14:59:44; Parameter PMT Volts = 500; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 20545; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.50; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.55; Parameter Scan Time = 14:59:44; Parameter PMT Volts = 780; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 19266; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.11; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-56 min after release from G1 arrest


title: MD_II_49_min

description:
Simple annotation: Oxidative stress, Menadione
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40968.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.49; Parameter Scan Time = 14:48:37; Parameter PMT Volts = 500; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 20534; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.45; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.49; Parameter Scan Time = 14:48:37; Parameter PMT Volts = 800; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 19255; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.13; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-49 min after release from G1 arrest


title: .24 mM H2O2- 077 minutes

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21659.gif


title: .24 mM H2O2- 040 minutes

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21650.gif


title: .24 mM H2O2- 275 minutes

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21654.gif


title: MD_II_35_min

description:
Simple annotation: Oxidative stress, Menadione
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40966.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.31; Parameter Scan Time = 14:25:19; Parameter PMT Volts = 500; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 20510; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.65; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.31; Parameter Scan Time = 14:25:19; Parameter PMT Volts = 770; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 19232; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.10; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira


title: .24 mM H2O2- 030 minutes

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21648.gif


title: MD_II_42_min

description:
Simple annotation: Oxidative stress, Menadione
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40967.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.43; Parameter Scan Time = 14:38:31; Parameter PMT Volts = 490; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 20524; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.38; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.43; Parameter Scan Time = 14:38:31; Parameter PMT Volts = 780; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 19245; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.10; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-42 min after release from G1 arrest


title: 2mM MD 170min

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-07/18418.gif

source_name: Cy3: Asynchronous yeast culture grown to 0.56 OD

source_name: Cy5: experiment-1.13 OD


title: .24 mM H2O2- 020 minutes

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21645.gif

source_name: Cy3: Yeast asynchronous 0.7OD mixed batch culture

source_name: Cy5: "Alpha factor synchronized cells, X minutes after release "


title: 2mM MD 120min

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-07/18416.gif

source_name: Cy5: experiment-0.74 OD


title: .24 mM H2O2- 140 minutes

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21643.gif


title: MD_II_28_min

description:
Simple annotation: Oxidative stress, Menadione
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40965.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.09; Parameter Scan Time = 14:08:05; Parameter PMT Volts = 500; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 20494; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.72; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.09; Parameter Scan Time = 14:08:05; Parameter PMT Volts = 770; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 19215; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.10; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy3: DBY8724-usynchronous culture- 1.2e7 cells/ml

source_name: Cy5: DBY8724- synchronous culture-28 min after release from G1 arrest


title: .24 mM H2O2- 112 minutes

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21641.gif

source_name: Cy5: Alpha factor synchronized cells, X minutes after release


title: MD_II_0_min

description:
Simple annotation: Oxidative stress, Menadione
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40961.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.09; Parameter Scan Time = 13:12:47; Parameter PMT Volts = 520; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 20438; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 2.89; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.09; Parameter Scan Time = 13:12:47; Parameter PMT Volts = 700; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 19159; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.11; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-0 min after release from G1 arrest


title: MD_II_7_min

description:
Simple annotation: Oxidative stress, Menadione
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40962.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.39; Parameter Scan Time = 13:32:06; Parameter PMT Volts = 510; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 20457; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.02; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.39; Parameter Scan Time = 13:32:06; Parameter PMT Volts = 800; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 19178; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.12; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-7 min after release from G1 arrest


title: MD_II_21_min

description:
Simple annotation: Oxidative stress, Menadione
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40964.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.88; Parameter Scan Time = 13:57:08; Parameter PMT Volts = 510; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 20483; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 2.88; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.88; Parameter Scan Time = 13:57:08; Parameter PMT Volts = 740; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 19204; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.11; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-21 min after release from G1 arrest


title: MD_II_14_min

description:
Simple annotation: Oxidative stress, Menadione
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40963.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.64; Parameter Scan Time = 13:44:46; Parameter PMT Volts = 490; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 20470; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.18; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.64; Parameter Scan Time = 13:44:46; Parameter PMT Volts = 800; Parameter Scan Date = 2003-04-24; Parameter Pixel Size = 10; Parameter Laser on time = 19192; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.12; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-14 min after release from G1 arrest


title: 2mM MD 100min

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-07/18434.gif


title: H2O2_II_0_min

description:
Simple annotation: Oxidative stress, H2O2
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/41003.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.51; Parameter Scan Time = 15:45:08; Parameter PMT Volts = 540; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 20194; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 2.68; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.51; Parameter Scan Time = 15:45:08; Parameter PMT Volts = 750; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 18916; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.11; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture- 0 min after release from G1 arrest


title: 2mM MD 077min

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-07/18432.gif

source_name: Cy5: experiment-0.63 OD


title: 2mM MD 085min

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-07/18433.gif

source_name: Cy5: experiment-0.63 - 0.74 OD


title: 2mM MD 070min

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-07/18431.gif


title: H2O2_II_180_min

description:
Simple annotation: Oxidative stress, H2O2
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40960.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.16; Parameter Scan Time = 19:22:02; Parameter PMT Volts = 530; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 20410; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.28; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.16; Parameter Scan Time = 19:22:02; Parameter PMT Volts = 750; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 19131; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.13; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-180 min after release from G1 arrest


title: H2O2_II_160_min

description:
Simple annotation: Oxidative stress, H2O2
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40959.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.16; Parameter Scan Time = 19:11:41; Parameter PMT Volts = 530; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 20399; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.38; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.16; Parameter Scan Time = 19:11:41; Parameter PMT Volts = 750; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 19120; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.12; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-160 min after release from G1 arrest


title: H2O2_II_140_min

description:
Simple annotation: Oxidative stress, H2O2
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40958.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.13; Parameter Scan Time = 19:00:52; Parameter PMT Volts = 530; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 20389; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.63; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.13; Parameter Scan Time = 19:00:52; Parameter PMT Volts = 750; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 19110; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.13; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-140 min after release from G1 arrest


title: H2O2_II_120_min

description:
Simple annotation: Oxidative stress, H2O2
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40957.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.10; Parameter Scan Time = 18:50:22; Parameter PMT Volts = 530; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 20379; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.85; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.10; Parameter Scan Time = 18:50:22; Parameter PMT Volts = 810; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 19100; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.13; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-120 min after release from G1 arrest


title: 2mM MD 014min

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-07/18430.gif

source_name: Cy3: Asynchronous yeast culture grown to 0.56 OD

source_name: Cy5: experiment-0.32 OD


title: H2O2_II_100_min

description:
Simple annotation: Oxidative stress, H2O2
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40956.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.04; Parameter Scan Time = 18:39:44; Parameter PMT Volts = 550; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 20369; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.86; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.04; Parameter Scan Time = 18:39:44; Parameter PMT Volts = 760; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 19090; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.13; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy5: DBY8724- synchronous culture-100 min after release from G1 arrest


title: 2mM MD 210min

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-07/18429.gif

source_name: Cy5: experiment-1.13 OD


title: H2O2_II_70_min

description:
Simple annotation: Oxidative stress, H2O2
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2003-05/40954.gif
Sample_scan_protocol: Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.83; Parameter Scan Time = 18:13:06; Parameter PMT Volts = 510; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 20342; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.36; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira
Sample_scan_protocol: Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.83; Parameter Scan Time = 18:13:06; Parameter PMT Volts = 720; Parameter Scan Date = 2003-04-22; Parameter Pixel Size = 10; Parameter Laser on time = 19063; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82695]; Parameter Laser Power = 3.13; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Shapira

source_name: Cy3: DBY8724-usynchronous culture- 1.2e7 cells/ml

source_name: Cy5: DBY8724- synchronous culture-70 min after release from G1 arrest


title: 2mM MD 030min

description:
Simple annotation: Oxidative stress, Time course
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-07/18428.gif

source_name: Cy5: experiment-0.40 OD