title: CDC45 binding profile in WT after 20min. in HU

description: CDC45 binding profile in WT on chr.VI  after 20min. treatment in HU

source_name: Chromatin-IP fraction by Cdc45 from wild type strain treated by HU for 20 min


title: BrdU incorporated regions in wild type strain (30min. in HU)

status: Public on Aug 27 2003

type: genomic

city: Bunkyo-ku

first: Katsuhiko

last: Shirahige

state: Tokyo

address: 1-1-1 Yayoi

department: Research Center for Epigenetic Disease

country: Japan

institute: The University of Tokyo

description: BrdU incorporated regions on chromosome VI after 30 min.treatment by HU. Wild type cell.

molecule: genomic DNA

organism: Saccharomyces cerevisiae

source_name: anti-BrdU antibody IP fraction from wild type strain treated by HU for 30 min.


title: CDC54 binding profile in mrc1 deletion mutant in HU

description: CDC54 binding profile in mrc1 deletion mutant on chr.VI after 60min. treatment in HU

source_name: Chromatin-IP fraction by Cdc54 from mrc1 deletion mutant strain treated by HU for 60 min


title: CDC45 binding profile in mrc1 deletion mutant after 20min. in HU

description: CDC45 binding profile in mrc1 deletion mutant on chr.VI after 20min.  treatment in HU.

source_name: Chromatin-IP fraction by Cdc45 from mrc1 deletion mutant strain treated by HU for 20 min.


title: CDC45 binding profile in mrc1 deletion mutant after 30min. in HU

description: CDC45 binding profile in mrc1 deletion mutant on chr.VI after 30min. treatment in HU

source_name: Chromatin-IP fraction by Cdc45 from mrc1 deletion mutant strain treated by HU for 30 min


title: DPB3 binding profile in WT in HU

description: DPB3 binding profile in WT on chr.VI after 60min. treatment in HU

source_name: Chromatin-IP fraction by Dpb3 from wild type strain treated by HU for 60 min


title: BrdU incorporated regions in mrc1 deletion mutant (30min. in HU)

description: BrdU incorporated regions on chromosome VI after 30 min. treatment by HU

source_name: anti-BrdU antibody IP fraction from mrc1 deletion mutant strain treated by HU for 30 min.


title: CDC45 binding profile in sml1 deletion mutant in HU for 60 min. (monitor together with BrdU incorp.)

description: CDC45 binding profile in sml1 deletion mutant on chr.VI after 60min. treatment by HU. Monitor together with BrdU incorporation.

source_name: Chromatin-IP fraction by Cdc45 from sml1 deletion mutant treated by HU for 60 min.


title: BrdU incorporated regions in wild type strain (50min. in HU)

description: BrdU incorporated regions on chromosome VI in wild type cells after 50min. treatment by HU.

source_name: anti-BrdU antibody IP fraction from wild type strain treated by HU for 50 min.


title: CDC45 binding profile in rad9 deletion mutant treated by HU for 60 min. (monitor together with BrdU incorp.)

description: CDC45 binding profile in rad9 deletion mutant treated by HU for 60 min. Monitor together with BrdU incorporation.

source_name: Chromatin-IP fraction by Cdc45 from rad9 deletion mutant treated by HU for 60 min.


title: BrdU incorporated regions in mrc1 deletion mutant (50min. in HU)

description: BrdU incorporated regions in mrc1 deletion mutant after 50min. treatment by 200mM HU

source_name: anti-BrdU antibody IP fraction from mrc1 deletion mutant strain treated by HU for 50 min.


title: BrdU incorporated regions in mrc1 deletion mutant (40min. in HU)

description: BrdU incorporated regions in mrc1 deletion mutant after 40 min. treatment by HU

source_name: anti-BrdU antibody IP fraction from mrc1 deletion mutant strain treated by HU for 40 min.


title: BrdU incorporated regions in sml1 deletion mutant strain treated by HU (60 min.)

description: BrdU incorporated regions in sml1 deletion mutant under the presence of 200mM HU for 1hour. Monitor together with Cdc45.

source_name: anti-BrdU antibody IP fraction from sml1 deletion mutant strain treated by HU for 60 min


title: BrdU incorporated regions in sml1tel1mec1 triple deletion mutant strain in HU (60 min.)

description: BrdU incorporated regions on chromosome VI during treatment by 200mMHU for 1 hour in sml1mec1tel1 triple deletion mutant.

source_name: anti-BrdU antibody IP fraction from sml1 mec1 tel1 triple deletion mutant strain treated by HU for 60 min


title: BrdU incorporated regions  in wild type strain treated by HU (60min)

description: BrdU incorporated regions on chromosomeVI in wild type cells after 60min. treatment by HU. Monitor together with Cdc45.

source_name: anti-BrdU antibody IP fraction from wild type strain treated by HU for 60 min


title: POL1 binding profile in HU (monitor together with RAD9)

description: POL1 binding profile on chromosome VI treatment after 60 min by hydroxy urea. Monitor together with Rad9.

source_name: Chromatin-IP fraction by Pol1 from wild type strain treated by HU for 60 min.


title: BrdU incorporated regions in wild type strain (40min. in HU)

description: BrdU incorporated regions in wild type cell after 40min. treatment by HU.

source_name: anti-BrdU antibody IP fraction from wild type strain treated by HU for 40 min.


title: Cdc45 binding profile in tof1 deletion mutant treated by HU for 60 min. (monitor together with BrdU incorp.)

description: Cdc45 binding profile on chromosome VI in tof1 deletion mutant after 60min. treatment by HU. Monitor together with BrdU incorporation.

source_name: Chromatin-IP fraction by Cdc45 from tof1 deletion mutant treated by HU for 60 min.


title: CDC45 binding profile in HU (monitor together with RAD53)

description: CDC45 binding profile on chromosome VI treatment after 60 min by hydroxy urea. Monitor together with Rad53.

source_name: Chromatin-IP fraction by Cdc45 from wild type strain treated by HU for 60 min.


title: DDC2 in unchallenged S-phase (50 min)

description: DDC2 binding profile on chromosome VI in unchallenged S-phase 50 min after release

source_name: Chromatin IP fraction by Ddc2 from wild type cells in S-phase for 50 min.


title: CDC45 binding profile in triple deletion mutant (sml1 mec1 tel1 deletion) in HU for 60 min. (monitor together with BrdU incorporation)

description: CDC45 binding profile in triple deletion mutant(sml1 mec1 tel1 deletion) on chromosome 6 after 60min. treatment by HU. Monitor together with BrdU incorporation.

source_name: Chromatin-IP fraction by Cdc45 from sml1 mec1 tel1 triple deletion mutant strain treated by HU for 60 min.


title: BrdU incorporated regions in mrc1 deletion mutant in HU (60 min)

description: BrdU incorporated regions in mrc1 deletion mutant. Monitor together with Cdc45.

source_name: anti-BrdU antibody IP fraction from mrc1 deletion mutant treated by HU for 60 min.


title: POL1 binding profile in HU (monitor together with DDC2)

description: POL1 binding profile on chromosome VI after 60 min treatment by hydroxy urea. Monitor together with Ddc2.

source_name: Chromatin IP fraction by Pol1 from wild type strain in HU for 60 min.


title: DDC1 in unchallenged S-phase (50 min)

description: DDC1 binding profile on chromosome VI in unchallenged S-phase 50 min after release

source_name: Chromatin IP fraction by Ddc1 from wild type cells in S-phase for 50 min.


title: CDC45 binding profile in HU (monitor together with TOF1)

description: CDC45 binding profile on chromosome VI treatment after 60 min by hydroxy urea. Monitor together with Tof1.


title: CDC45 binding profile in HU (monitor together with DDC1)

description: CDC45 binding profile on chromosome VI after 60 min treatment by hydroxy urea. Monitor together with Ddc1.

source_name: Chromatin-IP fraction by Cdc45 from wild type strain in HU for 60 min.


title: CDC45 binding profile in HU (monitor together with MEC3)

description: CDC45 binding profile on chromosome VI after 60 min treatment by hydroxy urea. Monitor together with Mec3.

source_name: Chromatin-IP fraction by Cdc45 from wild type strain treated with HU for 60 min.


title: BrdU incorporated regions in tof1 deletion mutant in HU for 60 min

description: BrdU incorporated regions on chromosome VI in tof1 deletion mutant strain after treatment by hydroxy urea for 60 min

source_name: anti-BrdU antibody IP fraction from tof1 deletion mutant strain in HU for 60 min.


title: POL1 binding profile in HU for 60min. (monitor together with Cdc45)

description: POL1 binding profile on chromosome VI after 60 min treatment by hydroxy urea. Monitor together with Cdc45 profile.

source_name: Chromatin IP fraction by Pol1 from wild type cells treated by HU for 60 min.


title: BrdU incorporated regions in rad9 deletion mutant in HU for 60 min.

description: BrdU incorporated regions in rad9 deletion mutant after 60 min. treatment by HU were precipitated by anti-BrdU antibody.

source_name: anti-BrdU antibody IP fraction from rad9 deletion mutant strain in HU for 60 min.


title: CDC45 in mrc1 deletion mutant treated with  hydroxy urea for 60min. (monitor together with BrdU incorp.)

description: CDC45 binding profile in mrc1 deletion mutant on chromosome VI after 60 min treatment hydroxy urea

source_name: Chromatin IP fraction by Cdc45 from mrc1 deletion mutant strain in HU for 60 min.


title: MRC1 in unchallenged S-phase (50 min)

description: MRC1 binding profile on chromosome VI in unchallenged S-phase 50 min after release

source_name: Chromatin IP fraction by Mrc1 from wild type cells in S-phase for 50 min.


title: MRC1 in unchallenged S-phase (40 min)

description: MRC1 binding profile on chromosome VI in unchallenged S-phase 40 min after release

source_name: Chromatin IP fraction by Mrc1 from wild type cells in S-phase for 40 min.


title: Pol1 Binding profile in hydroxy urea (monitor together with RAD24)

description: Pol1 binding profile on chromosome VI after 60 min treatment by hydroxy urea. Monitor together with Rad24.


title: Cervical Cancer C464

status: Public on Sep 01 2003

type: RNA

city: Piscataway

first: Khew-Voon

last: Chin

state: NJ

address: 164 Frelinghuysen Road

department: Chemical Biology

country: USA

institute: Ernest Mario School of Pharmacy, Rutgers University

description:
sex=female
ID = C464
Stage 2B (NED)
Total RNA
Keywords = cervical cancer
Keywords = cervix

molecule: total RNA

organism: Homo sapiens

source_name: Cervical cancer tissue


title: TOF1 in unchallenged S-phase (50 min)

description: TOF1 binding profile on chromosome VI in unchallenged S-phase 50 min after release

source_name: Chromatin IP fraction by Tof1 from wild type cells in S-phase for 50 min.


title: Pol1 in unchallenged S-phase (40 min)

description: Pol1 binding profile on chromosome VI in unchallenged S-phase 40 min after release

source_name: Chromatin IP fraction by Pol1 from wild type cells in S-phase for 40 min.


title: TOF1 in unchallenged S-phase (60 min)

description: TOF1 binding profile on chromosome VI in unchallenged S-phase 60 min after release

source_name: Chromatin IP fraction by Tof1 from wild type cells in S-phase for 60 min.


title: RAD24 binding profile in hydroxy urea

description: RAD24 binding profile on chromosome VI after 60 min treatment by hydroxy urea

source_name: Chromatin IP fraction by Rad24 from wild type cells treated with HU for 60 min.


title: Pol1 in unchallenged S-phase (50 min)

description: Pol1 binding profile on chromosome VI in unchallenged S-phase 50 min after release

source_name: Chromatin IP fraction by Pol1 from wild type cells in S-phase for 50 min.


title: RAD53 binding profile in hydroxy urea

description: RAD53 binding profile on chromosome VI after 60 min treatment by hydroxy urea (cells were treated with DMA).

source_name: Chromatin IP fraction by Rad53 from wild type cells treated with HU for 60 min.


title: TOF1 binding profile in hydroxy urea

description: TOF1 binding profile on chromosome VI after 60 min treatment by hydroxy urea

source_name: Chromatin IP fraction by Tof1 from wild type cells treated with HU for 60 min.


title: POL1 in unchallenged S-phase (60 min)

description: POL1 binding profile on chromosome VI in unchallenged S-phase 60 min after release

source_name: Chromatin IP fraction by Pol1 from wild type cells in S-phase for 60 min.


title: MRC1 binding profile in hydroxy urea

description: MRC1 binding profile on chromosome VI after 60 min treatment hydroxy urea

source_name: Chromatin IP fraction by Mrc1 from wild type cells treated with HU for 60 min.


title: DDC2 binding profile in hydroxy urea

description: DDC2 binding profile on chromosome VI after 60 min treatment hydroxy urea

source_name: Chromatin IP fraction by Ddc2 from wild type cells treated with HU for 60 min.


title: TOF1 in unchallenged S-phase (40 min)

description: TOF1 binding profile on chromosome VI in unchallenged S-phase 40 min after release

source_name: Chromatin IP fraction by Tof1 from wild type cells in S-phase for 40 min.


title: MEC3 binding profile in hydroxy urea

description: MEC3 binding profile on chromosome VI after 60 min treatment hydroxy urea

source_name: Chromatin IP fraction by Mec3 from wild type cells treated with HU for 60 min.


title: DDC1 binding profile in hydroxy urea

description: DDC1 binding profile on chromosome VI after 60 min treatment hydroxy urea

source_name: Chromatin IP fraction by DDC1 from wild type cells treated with HU for 60 min.


title: Cdc45 binding profile in hydroxy urea (monitor together with BrdU incorporation)

description: binding profile of Cdc45 on chromosome VI after 60 min treatment by hydroxy urea monitor together with BrdU incorporation.

source_name: Chromatin IP fraction by Cdc45 from wild type cells treated with HU for 60 min.


title: Cdc45 binding profile in hydroxy urea (monitor together with POL1)

description: Cdc45 binding profile after 60 min treatment by hydroxy urea monitor together with Pol1.


title: Orc1 binding profile

description: Orc1 Binding profile on chromosome VI in random culture

source_name: Chromatin IP fraction by ORC1 from random culture


title: MRC1 in unchallenged S-phase (60 min)

description: MRC1 binding profile on chromosome VI in unchallenged S-phase 60 min after release

source_name: Chromatin IP fraction by Mrc1 from wild type cells in S-phase for 60 min.


title: Thyroid hormone effect on cardiomyocytes; Sample 5

status: Public on Aug 23 2003

city: Tucson

first: Niranjan

last: Maitra

state: AZ

address: 1501 North Campbell Avenue

department: Sarver Heart Center

institute: University of Arizona

description:
Effect of thyroid hormone (T3) and its structural analogues like DITPA and CGS on primary culture of cardiomyocytes.

Comparison of T3 and DITPA treated cells. T3 represents channel 1 and DITPA is channel 2. Each gene (oligo) was spotted in triplicate.

organism: Rattus norvegicus

source_name: T3 treated cardiomyocytes

source_name: DITPA treated cardiomyocytes


title: Thyroid hormone effect on cardiomyocytes; Sample 6

description:
Effect of thyroid hormone (T3) and its structural analogues like DITPA and CGS on primary culture of cardiomyocytes.

Comparison of T3 and DITPA treated cells. DITPA represents channel 1 and T3 is channel 2. Each gene (oligo) was spotted in triplicate.


title: SHAM-LV_4A

status: Public on Aug 22 2003

city: Boston

first: Maria

last: Mirotsou

state: MA

institute: Brigham and Women's Hospital, Harvard Medical School

description: Heart left ventricle free wall from mouse model of Sham transverse aortic constriction (TAC) 1 week post operation

organism: Mus musculus

source_name: HEART LV FREE WALL


title: Thyroid hormone effect on cardiomyocytes; Sample 3

description:
Effect of thyroid hormone (T3) and its structural analogues like DITPA and CGS on primary culture of cardiomyocytes.

Comparison of hypothyroid and DITPA treated cells. Hypothyroid represents channel 2 and DITPA is channel 1. Each gene (oligo) was spotted in triplicate.

source_name: Hypothyroid cardiomyocytes


title: MI-S_3B

description: Heart intra-ventricular septum from mouse model of myocardial infarction 1 week post operation

source_name: HEART  INTRA-VENTRICULAR SEPTUM


title: Thyroid hormone effect on cardiomyocytes; Sample 8

description:
Effect of thyroid hormone (T3) and its structural analogues like DITPA and CGS on primary culture of cardiomyocytes.

Comparison of hypothyroid and CGS treated cells. CGS represents channel 1 and hypothyroid is channel 2. Each gene (oligo) was spotted in triplicate.

source_name: CGS treated cardiomyocytes


title: SHAM-S_2A

description: Heart intra-ventricular septum from mouse model of Sham transverse aortic constriction (TAC) 1 week post operation


title: Thyroid hormone effect on cardiomyocytes; Sample 10

description:
Effect of thyroid hormone (T3) and its structural analogues like DITPA and CGS on primary culture of cardiomyocytes.

Comparison of CGS and T3 treated cell. CGS represents channel 1 and T3 is channel 2. Each gene (oligo) was spotted in triplicate.


title: SHAM-LV_4AB


title: SUBSTANCE P 1 HOUR

status: Public on Aug 15 2003

city: Oklahoma City

first: Ricardo

last: Saban

state: OK

institute: University of Oklahoma Health Sciences Center

description: c57bl6 female mice were challenged with Substance P 1 micromolar.  Mice were euthanized 1 hour after and bladders removed for cDNA array analysis.

source_name: mouse bladder


title: SALINE 24 HOURS

description: c57bl6 female mice were challenged with saline.  Mice were euthanized 24 hours after and bladders removed for cDNA array analysis


title: LPS 4 HOURS

description: c57bl6 female mice were challenged with LPS 100 milligrams/ml.  Mice were euthanized 4 hours after and bladders removed for cDNA array analysis


title: LPS 24 HOURS

description: c57bl6 female mice were challenged with LPS 100 milligrams/ml.  Mice were euthanized 24 hours after and bladders removed for cDNA array analysis


title: LPS 1 HOUR

description: c57bl6 female mice were challenged with LPS 100 milligrams/ml.  Mice were euthanized 1 hour after and bladders removed for cDNA array analysis


title: SUBSTANCE P 24 HOURS

description:
c57bl6 female mice were challenged with Substance P 1 micromolar.  Mice were euthanized 24 hours after and bladders removed for cDNA array analysis
Lot batch = 2/3


title: SALINE 4 HOURS

description:
c57bl6 female mice were challenged with saline.  Mice were euthanized 4 hours after and bladders removed for cDNA array analysis
Lot batch = 2/2


title: SALINE 1 HOUR

description:
c57bl6 female mice were challenged with saline.  Mice were euthanized 1 hour after and bladders removed for cDNA array analysis
Lot batch = 2/1


title: SUBSTANCE P 4 HOURS

description: c57bl6 female mice were challenged with Substance P 1 micromolar.  Mice were euthanized 4 hours after and bladders removed for cDNA array analysis


title: Thyroid hormone effect on cardiomyocytes; Sample 1

description:
Effect of thyroid hormone (T3) and its structural analogues like DITPA and CGS on primary culture of cardiomyocytes.

Comparison of hypothyroid and DITPA treated cells. Hypothyroid represents channel 1 and DITPA is channel 2. Each gene (oligo) was spotted in triplicate.


title: Thyroid hormone effect on cardiomyocytes; Sample 2

description:
Effecet of thyroid hormone (T3) and its structural analogues like DITPA and CGS on primary culture of cardiomyocytes

Comparison of hypothyroid and T3 treated cells. Hypothyroid represents channel 1 and T3 is channel 2. Each gene (oligo) was spotted in triplicate.


title: Thyroid hormone effect on cardiomyocytes; Sample 7

description:
Effect of thyroid hormone (T3) and its structural analogues like DITPA and CGS on primary culture of cardiomyocytes.

Comparison of hypothyroid and CGS treated cells. Hypothyroid represents channel 1 and CGS is channel 2. Each gene (oligo) was spotted in triplicate.


title: Thyroid hormone effect on cardiomyocytes; Sample 9

description:
Effect of thyroid hormone (T3) and its structural analogues like DITPA and CGS on primary culture of cardiomyocytes.

Comparison of DITPA and CGS treated cells. DITPA represents channel 1 and CGS is channel 2. Each gene (oligo) was spotted in triplicate.


title: MI-LV_1B

description: Heart left ventricle free wall from mouse model of myocardial infarction 1 week post operation


title: RAD9 binding profile in hydroxy urea

description: RAD9 binding profile on chromosome VI after 60 min treatment by hydroxy urea

source_name: Chromatin IP fraction by Rad9 from wild type cells treated with HU for 60 min.


title: MI-LV_1A

description: LV free wall from mouse model of myocardial infarction 1 week post operation.


title: Ovalbumin-induced inflammation 24 hourS

description:
c57bl6 mice were sensitized (DNP-HSA) and challendged intravesically (DNP-OVA). Mice were euthanized 24 hours after OVA.
Keywords = bladder inflammation
Lot batch = 1/3


title: Ovalbumin-induced inflammation 4 hours

description:
c57bl6 mice were sensitized (DNP-HSA) and challenged intravesically (DNP-OVA).  Mice were euthanized 4 hours after OVA and bladders were removed for RNA extraction.
Lot batch = 1/2


title: Ovalbumin-induced inflammation 1 hour

description:
c57bl6 mice were sensitized (DNP-HSA) and challenged intravesically (DNP-OVA).  Mice were euthanized 1 hour after OVA.
Lot batch = 1/1


title: 48h Control A

status: Public on Aug 18 2003

city: La Jolla

first: Richard

middle: Louis

last: Lieber

state: CA

address: 9500 Gilman Drive

department: Orthopaedics and Bioengineering

institute: University of California

description:
Mice were subjected to 50 eccentric contractions (EC) or 50 isometric contractions (IC) using a non-invasive model, and then sacrificed 48 hours later. RNA from the tibialis anterior of 4 animals were pooled and then split into two groups for hybridization onto two separate Affymetrix MGU74Av2 chips. Control samples were contralateral to the exercised legs, and were only subjected to enough contractions to measure isometric torque.
Keywords = mouse tibialis anterior eccentric contraction muscle

source_name: Mouse Skeletal Muscle


title: ic patient 5

status: Public on Aug 14 2003

city: Baltimore

first: Susan

last: Keay

state: MD

institute: University of Maryland, Baltimore

description: bladder cells from ic patient 5

source_name: bladder epithelial cells


title: normal control 3

description: normal bladder cells


title: normal control 6

description: normal bladder cell


title: ic patient 4

description: bladder cells from ic patient 4


title: ic patient 6

description: bladder cells from ic patient 6


title: ic patient 2

description: ic patient cell


title: ic patient3

description: bladder cells from ic patient 3


title: normal control 2

description: normal control in dataset3


title: ic9 -- Cell line 2 treated with APF#1

description: normal bladder cell line 2 treated with APF#1. Membrane B is used


title: ic10 -- Cell line 2 treated with mock APF#1

description: Normal bladder cell line 2 treated with mock APF#2. Membrane A is used.


title: ic11 -- cell line 2 treated with APF#2

description: Normal bladder cell line 2 treated with APF#2. Membrane B is used.


title: ic12 -- cell line 2 treated with mock APF#2


title: normal control 1

description: normal control in dataset3


title: normal control 4

description: normal bladder cell


title: ic7 -- cell line 1 treated with APF#2

description: Cell line 1 treated with APF#2. Membrane B is used.


title: ic6 -- mock APF#1 on cell line 1

description: Cell line 1 treated with mock APF #1. Membrane B is used


title: ic5 -- cell line 1 treated with APF#1

description: Cell line 1 treated with APF#1. Membrane A is used.


title: ic22 -- APF on membrane A

description: the third run of normal bladder cell treated with APF. Membrane A is used.


title: ic24 -- APF on membrane B

description: the fourth run of normal bladder cell treated with APF. Membrane B is used


title: ic23 -- mock APF on membrane B

description: the third run of normal bladder cell treated with mock APF. Membrane B is used.


title: normal control 5

description: normal bladder cell


title: ic patient 1

description: bladder cell from ic patient


title: SAGE_Hiroshima_GC_P208T

type: SAGE

anchor: NlaIII

city: Hiroshima

first: Wataru

last: Yasui

department: Molecular Pathology

description:
Tissue Description: 60 yrs male. Primary gastric adenocarcinoma, T4N3M0, stage IV (TNM classification of malignant tumors, 5th ed. New York: Wiley-Liss, Inc, 59-62.), poorly differentiated (diffuse-adherent type), obtained by surgery. Library constructed in the laboratory of Wataru Yasui, M. D., Ph. D. and Naohide Oue, M. D., Ph. D. (Department of Molecular Pathology, Hiroshima University Graduate School of Biomedical Sciences, Hiroshima, Japan).
Sex: male
Organ: stomach
Lab host: DH10B
Vector: pZErO-1
Vector type: plasmid
R. Site 1: Sph1
R. Site 2: Sph1
Library treatment: non-normalized
Tissue supplier: Kazuhiro Yoshida, M.D., Ph.D
Sample type: Bulk
Producer: Department of Molecular Pathology
Sequences generated to date: 2701
Keywords = stomach, advanced gastric cancer, lymph node metastasis, non-normalized, SAGE library method, bulk

source_name: primary gastric cancer tissue


title: ic20 -- APF on membrane B

description: This is second run of normal bladder cells treated with APF. Membrane B is used.


title: Active ITP chip A

status: Public on Aug 08 2003

city: Goteborg

first: Bob

last: Olsson

address: Vita Straket 10

country: Sweden

institute: Internal Medicine

description: Pooled T-cells from 5 patients with active ITP

source_name: CD3+ cells


title: Remission ITP chip B

description: Pooled T-cells from 5 patients with ITP in remission


title: ic25 -- mock APF on membrane A

description: the fourth run of normal bladder cell treated with mock APF. Membrane A is used


title: Control ITP chip A

description: Pooled T-cells from 5 healthy controls


title: ic8 -- cell line 1treated with mock APF #2

description: Normal bladder cell line 1 treated with mock APF#2. Membrane A is used.


title: CDC45 binding profile in HU  (monitor together with MRC1)

description: CDC45 binding profile on chromosome VI treated for 1hr by hydroxy urea. Monitor together with Mrc1.

source_name: Chromatin-IP fraction by Cdc45 from wild type strain treated by HU for 60 min.


title: Active ITP chip B


title: RFA1 binding profile in WT in HU

description: RFA1 binding profile in WT on chr.VI  after 60min. treatment in HU

source_name: Chromatin-IP fraction by RFA1 from wild type strain treated by HU for 60 min


title: Cx43 KO cortical astrocytes 2

city: Prairie View

first: Dumitru

middle: Andrei

last: Iacobas

state: TX

address: Ann Preston St

department: Undergraduate Medical Academy

institute: Prairie View A&M University

description:
RNA samples extracted from astrocytes cultured from wild type and Cx43 null neonatal mice were dye labeled and individually co-hybridized with a reference of labeled cDNAs pooled from a variety of tissues on eight gene arrays containing 8975 mouse DNA sequences
Lot batch = 2

source_name: pool of ten adult male and female mouse tissues (aorta, brain, heart, kidney, liver, lung, ovary/testicles, spleen, and stomach), in a combination that provided a very high diversity of moderately well expressed genes

source_name: cultured cortical astrocytes from n


title: Remission ITP chip A


title: Cx43 cortical astrocytes 3

description:
RNA samples extracted from astrocytes cultured from wild type and Cx43 null neonatal mice were dye labeled and individually co-hybridized with a reference of labeled cDNAs pooled from a variety of tissues on eight gene arrays containing 8975 mouse DNA sequences
Lot batch = 3


title: Cx43 KO cortical astrocytes 1

description:
RNA samples extracted from astrocytes cultured from wild type and Cx43 null neonatal mice were dye labeled and individually co-hybridized with a reference of labeled cDNAs pooled from a variety of tissues on eight gene arrays containing 8975 mouse DNA sequences
Lot batch = 1

source_name: pool of ten adult male and female mouse tissues (aorta, brain, heart, kidney, liver, lung, ovary/testicles, spleen, and stomach), in a combination that provided a very high diversity of moderately well expressed genes.

source_name: cultured cortical astrocytes from


title: SAGE_Hiroshima_GC_P208L

description:
Tissue Description: 60 yrs male. Metastatic tumor (lymph node metastasis from gastric cancer: SAGE_Hiroshima_GC_P208T, GSM9103), obtained by surgery. Library constructed in the laboratory of Wataru Yasui, M. D., Ph. D. and Naohide Oue, M. D., Ph. D. (Department of Molecular Pathology, Hiroshima University Graduate School of Biomedical Sciences, Hiroshima, Japan).
Sex: male
Organ: lymph node
Lab host: DH10B
Vector: pZErO-1
Vector type: plasmid
R. Site 1: Sph1
R. Site 2: Sph1
Library treatment: non-normalized
Tissue supplier: Kazuhiro Yoshida, M.D., Ph.D
Sample type: Bulk
Producer: Department of Molecular Pathology
Sequences generated to date: 1034
Keywords = stomach, advanced gastric cancer, lymph node metastasis, non-normalized, SAGE library method, bulk

source_name: metastasis from gastric cancer


title: WT cortical astrocytes 1

description:
RNA samples extracted from astrocytes cultured from wild type and Cx43 null neonatal mice were dye labeled and individually co-hybridized with a reference of labeled cDNAs pooled from a variety of tissues on eight gene arrays containing 8975 mouse DNA sequences.
Lot batch = 1

source_name: pool of ten (male + female) adult C57BL/6j tissues: aorta, brain, heart, kidney, liver, lung, spleen, stomach, ovary/testicles

source_name: cultured cortical astrocytes from neonatal C57BL/6j WT mouse


title: ic21 -- mockAPF on membrane A

description: second run of normal bladder treated with mock APF. Membrane A is used.


title: Cx43 KO cortical astrocytes 4

description:
RNA samples extracted from astrocytes cultured from wild type and Cx43 null neonatal mice were dye labeled and individually co-hybridized with a reference of labeled cDNAs pooled from a variety of tissues on eight gene arrays containing 8975 mouse DNA sequences
Lot batch = 4


title: Col-0-2

status: Public on Aug 05 2003

city: Raleigh

first: Jose

middle: M

last: Alonso

state: NC

department: Genetics

institute: North Carolina State University

description: Wild-type Arabidopsis seeds (Col-0) were grown under short day conditions for 30 days. Shoot apices were dissected under the dissecting scope and quickly frozen and stored in liquid N2. Second replica.

organism: Arabidopsis thaliana

source_name: Arabidopsis shoot apices


title: SAGE_Hiroshima_GC_W226T

status: Public on Aug 06 2003

description:
Tissue Description: 59 yrs male. Primary gastric adenocarcinoma, T1N0M0, stage IA (TNM classification of malignant tumors, 5th ed. New York: Wiley-Liss, Inc, 59-62.), well differentiated, obtained by surgery. Library constructed in the laboratory of Wataru Yasui, M. D., Ph. D. and Naohide Oue, M. D., Ph. D. (Department of Molecular Pathology, Hiroshima University Graduate School of Biomedical Sciences, Hiroshima, Japan).
Sex: male
Organ: stomach
Lab host: DH10B
Vector: pZErO-1
Vector type: plasmid
R. Site 1: Sph1
R. Site 2: Sph1
Library treatment: non-normalized
Tissue supplier: Kazuhiro Yoshida, M.D., Ph.D
Sample type: Bulk
Producer: Department of Molecular Pathology
Sequences generated to date: 2592
Keywords = stomach, early gastric cancer, non-normalized, SAGE library method, bulk


title: Control ITP chip B

description: Pooled T-cells from 5 healthy controls


title: Col-7-2

description: Wild-type Arabidopsis seeds (Col-0) were grown under short day conditions for 30 days. Plants were than shifted to long day for 7 days. Shoot apices were dissected under the dissecting scope and quickly frozen and stored in liquid N2. Second replica.


title: Thyroid hormone effect on cardiomyocytes; Sample 4

description:
Effect of thyroid hormone (T3) and its structural analogues like DITPA and CGS on primary culture of cardiomyocytes.

Comparison of hypothyroid and T3 treated cells. T3 represents channel 1 and hypothyroid is channel 2. Each gene (oligo) was spotted in triplicate.

source_name: T3 treated cardiomyocytes

source_name: Hypothyroid cardiomyocytes


title: WT cortical astrocytes 3


title: WT cortical astrocyte 2

description:
RNA samples extracted from astrocytes cultured from wild type and Cx43 null neonatal mice were dye labeled and individually co-hybridized with a reference of labeled cDNAs pooled from a variety of tissues on eight gene arrays containing 8975 mouse DNA sequences.
Lot batch = 2

source_name: cultured cortical astrocytes fro


title: WT cortical astrocytes 4

description:
RNA samples extracted from astrocytes cultured from wild type and Cx43 null neonatal mice were dye labeled and individually co-hybridized with a reference of labeled cDNAs pooled from a variety of tissues on eight gene arrays containing 8975 mouse DNA sequences.
Lot batch = 4


title: Col-0-1

description: Wild-type Arabidopsis seeds (Col-0) were grown under short day conditions for 30 days. Shoot apices were dissected under the dissecting scope and quickly frozen and stored in liquid N2. First replica.


title: ethylene2-1

description: Wild-type Arabidopsis seeds (Col-0) were germinated in the dark in continuous air for 68 hours.  After air incubation, 10 ppm ethylene was flushed in the chambers for a period of 4 hours. Samples were then quickly frozen and stored in liquid N2. Second experiment, first replica.

source_name: Ethylene treated 3-day-old Arabidopsis seedlings


title: ethylene2-2

description: Wild-type Arabidopsis seeds (Col-0) were germinated in the dark in continuous air for 68 hours.  After air incubation, 10 ppm ethylene was flushed in the chambers for a period of 4 hours. Samples were then quickly frozen and stored in liquid N2. Second experiment, firstsecond replica.


title: air2-2

description: Wild-type Arabidopsis seeds (Col-0) were germinated in the dark for 72 hours.  Samples were then quickly frozen and stored in liquid N2. Second experiment, second replica.

source_name: Air treated 3-day-old Arabidopsis seedlings


title: UV-B b,pl-Cy3-CA b,pl-Cy5

status: Public on Aug 04 2003

city: Rosario

first: Paula

last: Casati

state: Santa Fe

address: Suipacha 531

department: Biological Sciences

country: Argentina

institute: Universidad Nacional de Rosario

description:
For a description of the experiment, see
Paula Casati and Virginia Walbot, Plant Physiology (August 2003)

Gene Expression Profiling in Response to Ultraviolet Radiation in Maize Genotypes with Varying Flavonoid Content.

organism: Zea mays

source_name: corn adult leaf b,pl in the greenhouse after 8h UV-B supplementation-Cy3

source_name: corn adult leaf b,pl under CA plastic-Cy5


title: ethylene1-2

description: Wild-type Arabidopsis seeds (Col-0) were germinated in the dark in continuous air for 68 hours.  After air incubation, 10 ppm ethylene was flushed in the chambers for a period of 4 hours. Samples were then quickly frozen and stored in liquid N2. First experiment, second replica.


title: PEb,pl-Cy3-CAb,pl-Cy5

source_name: corn adult leaf b,pl under PE plastic-Cy3


title: LE b,pl-Cy3-CA b,pl-Cy5

source_name: corn adult leaf b,pl under LE plastic-Cy3


title: CAmutator-Cy3- PEmutator-Cy5

source_name: corn adult leaf mutator under CA plastic-Cy3

source_name: corn adult leaf mutator under PE plastic-Cy5


title: LE bz2-Cy3-CA bz2-Cy5

source_name: corn adult leaf bz2 under LE-Cy3

source_name: corn adult leaf bz2 under CA-Cy5


title: air1-2

description: Wild-type Arabidopsis seeds (Col-0) were germinated in the dark for 72 hours.  Samples were then quickly frozen and stored in liquid N2. First experiment, second replica.


title: ethylene1-1

description: Wild-type Arabidopsis seeds (Col-0) were germinated in the dark in continuous air for 68 hours.  After air incubation, 10 ppm ethylene was flushed in the chambers for a period of 4 hours. Samples were then quickly frozen and stored in liquid N2. First experiment, first replica.


title: CAb,pl-Cy5-PEB,Pl-Cy3

source_name: corn adult leaf B,Pl under PE-Cy3

source_name: corn adult leaf b,pl under CA-Cy5


title: 01-A03_p65.sample

city: Daejon

first: Park

last: Jinwoo

country: South Korea

institute: TOOLGEN

description:
CellLine:032002-255(1-A3p65 GGPbadfinger)
ID:01-A03


title: Col-7-1

description: Wild-type Arabidopsis seeds (Col-0) were grown under short day conditions for 30 days. Plants were than shifted to long day for 7 days. Shoot apices were dissected under the dissecting scope and quickly frozen and stored in liquid N2. First replica.


title: CA mutator-Cy3-LE mutator-Cy5

source_name: corn adult leaf mutator under LE plastic-Cy5


title: CAB,PL-Cy3-LEB,PL-Cy5

source_name: corn adult leaf B,PL under CA plastic-Cy3

source_name: corn adult leaf B,PL under LE plastic-Cy5


title: air1-1

description:
Wild-type Arabidopsis seeds (Col-0) were germinated in the dark for 72 hours.  Samples were then quickly frozen and stored in liquid N2.
First experiment, first replica.


title: CA b,pl-Cy3-UV-BB,Pl-Cy5

source_name: corn adult leaf b,pl under CA plastic-Cy3

source_name: corn adult leaf B,PL in the greenhouse after 8h UV-B supplementation-Cy5


title: air2-1

description: Wild-type Arabidopsis seeds (Col-0) were germinated in the dark for 72 hours.  Samples were then quickly frozen and stored in liquid N2. Second experiment, first replica.


title: CA b,pl-Cy3-UV-B b,pl-Cy5

source_name: corn adult leaf b,pl in the greenhouse after 8h supplementary UV-B-Cy5


title: CA bz2-Cy3- PE bz2-Cy5

source_name: corn adult leaf bz2 under CA plastic-Cy3

source_name: corn adult leaf bz2 under PE plastic-Cy5


title: Houston-Aerobic-4

status: Public on Aug 01 2003

city: Laramie

first: Mark

last: Gomelsky

state: WY

department: Molecular Biology

institute: University of Wyoming

description:
mRNA harvested by boiling lysis/hot phenol method
at OD600 of 0.13 +/- 0.02.  Cells were grown at
30% oxygen, 1% carbon dioxide, 69% nitrogen.

organism: Cereibacter sphaeroides

source_name: Rhodobacter sphaeroides 2.4.1


title: CA b,pl-Cy3-UV-B mutator-Cy5

source_name: corn adult leaf mutator in the greenhouse after 8 h of UV-B supplementation-Cy5


title: CA b,pl-Cy3-PE B,PL-Cy5

source_name: corn adult leaf B,PL under PE plastic-Cy3


title: CA b,pl-Cy3-UV-B bz2-Cy5

source_name: corn adult leaf bz2 in the greenhouse after 8h of UV-B supplementation-Cy5


title: CA b,pl-Cy3-CA bz2-Cy5


title: Houston-Aerobic-1

description:
mRNA harvested by boiling lysis/hot phenol at OD600
of 0.13+/-0.02, growth conditions were 30% oxygen, 69% nitrogen, and 1% CO2.
Global scaling was performed with a TGT value of 500


title: Houston-Aerobic-3

description:
mRNA harvested at OD600 of 0.13+/-0.02 by boiling
lysis/hot phenol method.  Cells grown at 30% oxygen,
1% carbon dioxide, 69% nitrogen.


title: expt3 IAb -/-

status: Public on Jul 25 2003

city: Chapel Hill

first: Athena

last: Wong

department: Microbiology and Immunology

institute: Lineberger Cancer Center

description: RNA preparation, labelling, and hybridization as described in Wong et al 2003 Nat. Immunol.

source_name: day 10 DC's


title: CA b,pl-Cy3-(-)PEB,PL-Cy5

source_name: corn adult leaf B,PL one day after removing the PE plastic-Cy5


title: CA b,pl-Cy3-LE b,pl-Cy5

source_name: corn adult leaf b,pl under LE plastic-Cy5


title: CA B,PL-Cy3- PE B,PL-Cy5

source_name: corn adul leaf B,PL under a CA plastic-Cy3

source_name: corn adul leaf B,PL under a PE plastic-Cy5


title: CA b,pl-Cy3-(-)PE b,pl-Cy5

source_name: corn adult leaf b,pl one day after removing PE plastic-Cy3


title: expt 3 CIITA -/-


title: (-)PEB,PL-Cy3-CA b,pl-Cy5

source_name: corn adult leaf B,PL one day after removing PE filter-Cy3

source_name: corn adult leaf b,pl under CA filter-Cy5


title: CAb,pl-Cy3-CAB,PL-Cy5

source_name: corn adult leaf b,pl under CA-Cy3

source_name: corn adult leaf B,Pl under CA-Cy5


title: expt1 CIITA -/-


title: expt 3 B6


title: CAb,pl-Cy3-PEb,pl-Cy5

source_name: corn adult leaf b,pl under CA plastic-Cy3

source_name: corn adult leaf b,pl under PE plastic-Cy5


title: CA bz2-Cy3-LE bz2-Cy5

source_name: corn adult leaf bz2 under CA plastic-Cy3

source_name: corn adult leaf bz2 under LE plastic-Cy5


title: CAb,pl-Cy5-CAB,Pl-Cy3

source_name: corn adult leaf B,PL under CA plastic-Cy3

source_name: corn adult leaf b,pl under CA plastic-Cy5


title: IAB -/- expt 2


title: CA b,pl-Cy3-(-)UV-B b,pl-Cy5

source_name: corn adult leaf b,pl in the greenhouse with no UV-B-Cy5


title: CA b,pl-Cy3-CA mutator-Cy5

source_name: corn adult leaf mutator under CA plastic-Cy3


title: (-)PE b,pl-Cy3-CA b,pl-Cy5

description:
For description of the experiment, see Casati and Walbot, Plant Physiology (August 2003)
Gene Expression Profiling in Response to Ultraviolet Radiation in Maize Genotypes with Varying Flavonoid Content.

source_name: corn adult leaf b,pl after removing PE plastic 1 day-Cy3

source_name: corn adult leaf b,plunder CA plastic -Cy5


title: TAC-LV_2A

description: Heart left ventricle free wall from mouse model of transverse aortic constriction (TAC) 1 week post operation

source_name: HEART LV FREE WALL


title: d1

description: DMSO conditions

source_name: University of Wyoming


title: expt 1 B6

source_name: day 10 DC's


title: d2

description: DMSO conditions, 2-nd chip


title: PGA-Pi3k_ntg_3119v2

status: Public on Jul 24 2003

city: Cambridge

first: Martina

last: Schinke

address: 7 Divinity Ave

department: Bauer Center for Genomic Research

institute: Harvard University

description:
This mouse is non-transgenic to be used as a control for caPI3k and dnPI3k.  These arrays were scanned at a PMT of 10%.
For more information visit http://cardiogenomics.med.harvard.edu/groups/proj1/pages/pi3k_home.html
Keywords = cardiac, pi3k, hypertrophy

source_name: Only ventricle


title: expt1 IAb-/-


title: CIITA-/-


title: PGA-Pi3k_ntg_2819v2


title: PGA-Pi3k_ca_3120v2

description:
This mouse is transgenic for constitutively active PI3k.  caPI3K transgenic animals have hearts 20% larger than those of wild type littermates.  These arrays were scanned at a PMT of 10%.
For more information visit http://cardiogenomics.med.harvard.edu/groups/proj1/pages/pi3k_home.html
Keywords = cardiac, pi3k, hypertrophy


title: SAMPMNParturition4

status: Public on Jul 22 2003

city: East Lansing

first: Sally

middle: A

last: Madsen

state: MI

address: B212 Anthony Hall

department: Animal Science

institute: Michigan State University

description:
Bovine blood neutrophils purified on days 0 and 0.25 relative to parturition on day 0.  Pooled RNA samples from 4 parturient cows.
Keywords = microarray, cDNA, bovine, neutrophil, parturition

organism: Bos taurus

source_name: Day 0 pooled Neutrophils

source_name: Day 0.25 pooled Neutrophils


title: SAMPMNParturition3

description:
Bovine blood neutrophils purified on days -7 and 1 relative to parturition on day 0.  Pooled RNA from 4 parturient cows.
Keywords = microarray, cDNA, bovine, neutrophil, parturition

source_name: Day -7 pooled Neutrophils

source_name: Day 1 pooled Neutrophils


title: experiment 2 b6


title: PGA-Pi3k_ntg_2820v2


title: ic 19 -- with mock APF

description: normal bladder cell treated with mock APF on membrane B

source_name: bladder epithelial cells


title: 42-2, high temperature evolved line replicate 3

status: Public on Jul 14 2003

city: Irvine

first: Michelle

last: Riehle

institute: University of California Irvine

description: Mid log phase culture of Escherichia coli strain 42-2, high temperature evolved line.

organism: Escherichia coli

source_name: mid log phase culture


title: 42-1, high temperature evolved line replicate 1

description: Mid log phase culture of Escherichia coli strain 42-1, high temperature evolved line.


title: PGA-Pi3k_ca_2818v2

description:
This mouse is transgenic for constitutively active PI3k.  caPI3K transgenic animals have hearts 20% larger than those of wild type littermates.  These arrays were scanned at a PMT of 10%.
For more information visit http://cardiogenomics.med.harvard.edu/groups/proj1/pages/pi3k_home.html
Keywords = hypertrophy, pi3k, cardiac


title: 42-3, high temperature evolved line replicate 3

description: Mid log phase culture of Escherichia coli strain 42-3, high temperature evolved line.


title: SAGE_Hiroshima_GC_W246T

status: Public on Jul 20 2003

description:
Tissue Description: 44 yrs male. Primary gastric adenocarcinoma, T2N2M0, stage IIIA (TNM classification of malignant tumors, 5th ed. New York: Wiley-Liss, Inc, 59-62.), well differentiated, obtained by surgery. Library constructed in the laboratory of Wataru Yasui, M. D., Ph. D. and Naohide Oue, M. D., Ph. D. (Department of Molecular Pathology, Hiroshima University Graduate School of Biomedical Sciences, Hiroshima, Japan).
Sex: male
Organ: stomach
Lab host: DH10B
Vector: pZErO-1
Vector type: plasmid
R. Site 1: Sph1
R. Site 2: Sph1
Library treatment: non-normalized
Tissue supplier: Kazuhiro Yoshida, M.D., Ph.D
Sample type: Bulk
Producer: Department of Molecular Pathology
Sequences generated to date: 2867
Keywords = stomach, advanced gastric cancer, non-normalized, SAGE library method, bulk

source_name: primary gastric cancer tissue


title: 42-1, high temperature evolved line replicate 2


title: 30C, aerobic dark

status: Public on Jul 19 2003

description:
aerobic (30% O2) growth conditions, 2.4.1. strain,
RNA isolated with bead beater + RNeasy kits

source_name: R. sphaeroides, Laramie


title: 42-3, high temperature evolved line replicate 2


title: 42-2, high temperature evolved line replicate 1


title: SAMPMNParturition2

description:
Bovine blood neutrophils purified on day 0 and 1 relative to parturition on day 0.  Pooled RNA samples from 4 parturient cows.
Keywords = microarray, cDNA, bovine, neutrophil, parturition

source_name: Day 1 Pooled Neutrophils

source_name: Day 0 Pooled Neutrophils


title: bladder cell with APF

description: normal bladder cell treated with APF on membrane A


title: PGA-Pi3k_dn_1294v2

description:
This mouse is transgenic for dominant-negative forms of PI3k.  dnPI3K transgenic animals have hearts that are 17% smaller than those of wild type littermates.  These arrays were scanned at a PMT of 10%.
For more information visit http://cardiogenomics.med.harvard.edu/groups/proj1/pages/pi3k_home.html
Keywords = cardiac, pi3k, hypertrophy


title: PGA-Pi3k_dn_1451v2


title: Ancestor replicate 3

description: Mid log phase culture of Escherichia coli Ancestor strain.


title: Ancestor replicate 2


title: PGA-Pi3k_dn_1449v2


title: 42-2, high temperature evolved line replicate 2


title: Ancestor replicate 1


title: d3, DMSO dark

description:
DMSO (dark) growth conditions, 2.4.1. strain,
RNA isolated with bead beater + RNeasy kits


title: 42-3, high temperature evolved line replicate 1


title: PGA-Nk2-sd_wt_N1A-m4

status: Public on Jul 12 2003

description:
Mouse model of congenital heart disease.  This model has a deletion of the NK2 specific domain of the Nkx2.5.  Taken from a wild-type embyronic day 12.5 mouse.  For more information see http://cardiogenomics.med.harvard.edu/groups/proj1/pages/nk2-sd_home.html.
Keywords = congenital heart disease, Csx, Nkx2.5

source_name: Entire heart of E12.5 mouse


title: PGA-Nk2-sd_null_8B-m4

description:
Mouse model of congenital heart disease.  This model has a deletion of the NK2 specific domain of the Nkx2.5.  Taken from a null embyronic day 12.5 mouse.  For more information see http://cardiogenomics.med.harvard.edu/groups/proj1/pages/nk2-sd_home.html.
Keywords = congenital heart disease, Csx, Nkx2.5


title: SAMPMNParturition1

description:
Bovine blood neutrophils purified on days -7 and 0.25 relative to parturition on day 0.  Pooled RNA samples from 4 parturient cows.
Keywords = microarray, cDNA, bovine, neutrophil, parturition

source_name: Day 0.25 Pooled Neutrophils

source_name: Day -7 Pooled Neutrophils


title: 42-1, high temperature evolved line replicate 3


title: PGA-Nk2-sd_null_N3B-m4


title: PGA-Nk2-sd_wt_9a-m4


title: PGA-Nk2-sd_wt_9B-m4


title: PGA-Nk2-sd_het_N2A-m4

description:
Mouse model of congenital heart disease.  This model has a deletion of the NK2 specific domain of the Nkx2.5.  Taken from a heterozygous embyronic day 12.5 mouse.  For more information see http://cardiogenomics.med.harvard.edu/groups/proj1/pages/nk2-sd_home.html.
Keywords = congenital heart disease, Csx, Nkx2.5


title: PGA-Nk2-sd_wt_7A-m4


title: PGA-Nk2-sd_null_8A-m4


title: PGA-Nk2-sd_null_4B-m4


title: PGA-Nk2-sd_null_3B-m4


title: PGA-Nk2-sd_wt_2A-m4


title: PGA-Nk2-sd_wt_1A-m4


title: PGA-Nk2-sd_het_6B-m4


title: PGA-Nk2-sd_wt_7B-m4


title: PGA-Nk2-sd_het_6A-m4


title: PGA-Pi3k_ca_2817v2

description:
This mouse is transgenic for constitutively active PI3k.  caPI3K transgenic animals have hearts 20% larger than those of wild type littermates.  These arrays were scanned at a PMT of 10%.  For more information visit http://cardiogenomics.med.harvard.edu/groups/proj1/pages/pi3k_home.html
Keywords = hypertrophy, pi3k, cardiac


title: PGA-Nk2-sd_het_N2B-m4


title: PGA-Nk2-sd_het_12B-m4


title: PGA-Nk2-sd_het_12A-m4


title: PGA-Nk2-sd_null_3A-m4


title: PGA-Nk2-sd_het_5B-m4


title: SAGE_Hiroshima_GC_S219T

status: Public on Jul 10 2003

description:
Tissue Description: 27 yrs female. Primary gastric adenocarcinoma, T3N3M0, stage IV (TNM classification of malignant tumors, 5th ed. New York: Wiley-Liss, Inc, 59-62.), poorly differentiated (scirrhous type), obtained by surgery. Library constructed in the laboratory of Wataru Yasui, M. D., Ph. D. and Naohide Oue, M. D., Ph. D. (Department of Molecular Pathology, Hiroshima University Graduate School of Biomedical Sciences, Hiroshima, Japan).
Sex: female
Organ: stomach
Lab host: DH10B
Vector: pZErO-1
Vector type: plasmid
R. Site 1: Sph1
R. Site 2: Sph1
Library treatment: non-normalized
Tissue supplier: Kazuhiro Yoshida, M.D., Ph.D
Sample type: Bulk
Producer: Department of Molecular Pathology
Sequences generated to date: 2441
Keywords = stomach, scirrhous gastric cancer, young female, non-normalized, SAGE library method, bulk


title: PGA-Nk2-sd_wt_N1B-m4


title: PGA-Nk2-sd_wt_2B-m4


title: PGA-Nk2-sd_het_5A-m4


title: PGA-Nk2-sd_null_4A-m4


title: PGA-Nk2-sd_null_N3A-m4


title: PGA-Nk2-sd_wt_1B-m4


title: 121515331 [1743-1771]

status: Public on Jul 09 2003

city: Gainesville

first: Matias

last: Kirst

state: FL

institute: University of Florida

description: Genotypes are individuals from the progeny of a Eucalyptus grandis backcross family. Differentiating xylem was collected from 20-month-old trees during the peak of the growing season. Total RNA was used in the labeling reactions.

organism: Eucalyptus grandis

source_name: Genotype 1771

source_name: Genotype 1743


title: 121509691 [1796-1666]

source_name: Genotype 1666

source_name: Genotype 1796


title: 121509681 [1733-1732]

source_name: Genotype 1732

source_name: Genotype 1733


title: 121505752 [1793-1794]

source_name: Genotype 1794

source_name: Genotype 1793


title: 121515332 [1784-1796]

source_name: Genotype 1784


title: 121509702 [1773-1784]

source_name: Genotype 1773


title: 121509062 [1788-1789]

source_name: Genotype 1789

source_name: Genotype 1788


title: 121533921 [1792-1793]

source_name: Genotype 1792


title: 121509061 [1785-1786]

source_name: Genotype 1786

source_name: Genotype 1785


title: 121509682 [1771-1773]


title: 121534022 [1779-1780]

source_name: Genotype 1780

source_name: Genotype 1779


title: 121509051 [1783-1785]

source_name: Genotype 1783


title: 121533932 [1794-1797]

source_name: Genotype 1797


title: 121509701 [1732-1743]

source_name: Genotype 1743


title: 121505802 [1789-1790]

source_name: Genotype 1790


title: 121505801 [1786-1787]

source_name: Genotype 1787


title: 121506451 [1778-1779]

source_name: Genotype 1778


title: 121509052 [1787-1788]


title: 121533922 [1797-1733]

source_name: Genotype 1733


title: 121533872 [1770-1772]

source_name: Genotype 1772

source_name: Genotype 1770


title: 121505751 [1790-1791]

source_name: Genotype 1791


title: 121533931 [1791-1792]


title: 121506452 [1782-1783]

source_name: Genotype 1782


title: 121533892 [1769-1770]

source_name: Genotype 1769


title: 121515322 [1780-1782]


title: 121534002 [1766-1769]

source_name: Genotype 1766


title: 121533871 [1764-1766]

source_name: Genotype 1764


title: 121515321 [1774-1778]

source_name: Genotype 1774


title: 121534001 [1762-1763]

source_name: Genotype 1763

source_name: Genotype 1762


title: 121534021 [1772-1774]


title: 121531981 [1755-1756]

source_name: Genotype 1756

source_name: Genotype 1755


title: 121531992 [1750-1751]

source_name: Genotype 1751

source_name: Genotype 1750


title: 121531952 [1760-1762]

source_name: Genotype 1760


title: 121533891 [1763-1764]


title: 121533992 [1740-1741]

source_name: Genotype 1741

source_name: Genotype 1740


title: 121509842 [1724-1726]

source_name: Genotype 1726

source_name: Genotype 1724


title: 121534031 [1754-1755]

source_name: Genotype 1754


title: 121498301 [1741-1744]

source_name: Genotype 1744


title: 121533991 [1734-1735]

source_name: Genotype 1735

source_name: Genotype 1734


title: 121498302 [1749-1750]

source_name: Genotype 1749


title: 121534011 [1746-1749]

source_name: Genotype 1746


title: 121534032 [1758-1759]

source_name: Genotype 1759

source_name: Genotype 1758


title: 121507961 [1722-1723]

source_name: Genotype 1723

source_name: Genotype 1722


title: 121531951 [1756-1758]

source_name: Genotype 1756


title: 121533852 [1717-1718]

source_name: Genotype 1718

source_name: Genotype 1717


title: 121533832 [1736-1740]

source_name: Genotype 1736


title: 121507982 [1715-1717]

source_name: Genotype 1715


title: 121531991 [1744-1746]


title: 121533831 [1731-1734]

source_name: Genotype 1731


title: 121509841 [1721-1722]

source_name: Genotype 1721


title: 121507962 [1726-1727]

source_name: Genotype 1727

source_name: Genotype 1726


title: 121533812 [1735-1736]

source_name: Genotype 1735


title: 121509832 [1723-1724]

source_name: Genotype 1724


title: 121534012 [1751-1754]

source_name: Genotype 1754

source_name: Genotype 1751


title: 121531982 [1759-1760]

source_name: Genotype 1760

source_name: Genotype 1759


title: 121509831 [1720-1721]

source_name: Genotype 1720


title: 121509091 [1700-1701]

source_name: Genotype 1701

source_name: Genotype 1700


title: 121507971 [1713-1715]

source_name: Genotype 1713


title: 121509071 [1718-1720]

source_name: Genotype 1718


title: 121533811 [1727-1731]


title: 121506422 [1701-1702]

source_name: Genotype 1702


title: 121509072 [1694-1696]

source_name: Genotype 1696

source_name: Genotype 1694


title: 121506402 [1702-1452]

source_name: Genotype 1452


title: 121533851 [1711-1713]

source_name: Genotype 1711


title: 121509092 [1452-1709]

source_name: Genotype 1709


title: 121506421 [1696-1697]

source_name: Genotype 1697


title: 121507972 [1691-1752]

source_name: Genotype 1752

source_name: Genotype 1691


title: 121506401 [1697-1700]


title: 123169602 [1716-1687]

source_name: Genotype 1687

source_name: Genotype 1716


title: 121507981 [1709-1711]


title: 121531822 [1679-1682]

source_name: Genotype 1682

source_name: Genotype 1679


title: 121508001 [1684-1685]

source_name: Genotype 1685

source_name: Genotype 1684


title: 121509082 [1693-1694]

source_name: Genotype 1693


title: 121509081 [1690-1691]

source_name: Genotype 1690


title: 121533911 [1689-1690]

source_name: Genotype 1689


title: 121533912 [1752-1693]


title: 123169622 [1687-1689]


title: 121507992 [1677-1678]

source_name: Genotype 1678

source_name: Genotype 1677


title: 123169592 [1685-1716]


title: 121531962 [1678-1679]


title: 121531971 [1673-1675]

source_name: Genotype 1675

source_name: Genotype 1673


title: 123169601 [1683-1684]

source_name: Genotype 1683


title: 121531821 [1676-1677]

source_name: Genotype 1676


title: 121508562 [1672-1673]

source_name: Genotype 1672


title: 121531961 [1675-1676]


title: wt_3

status: Public on Jul 05 2003

city: West Lafayette

first: Jeanne

last: Romero-Severson

state: IN

institute: Purdue University

description:
Expression data from germinating seeds of Columbia.
Keywords = CHD3, chromatin remodeling factors, developmental transition, embryo, seed germination

source_name: germinating seeds of Columbia


title: 121508572 [1671-1672]

description: Genotypes are individuals from the progeny of a Eucalyptus grandis backcross family. Differentiating xylem was collected from 20-month-old trees during the peak of the growing season. Total RNA was extracted from differentiating xylem and used in the labeling reactions.

source_name: Genotype 1671


title: wt_4


title: pkl_4

description:
Expression data from germinating seeds of pkl mutant.
Keywords = CHD3, chromatin remodeling factors, developmental transition, embryo, seed germination

source_name: germinating seeds of pkl mutant


title: Upkl_1

description:
Expression data from germinating seeds of pkl mutant plus uniconazole-P.
Keywords = CHD3, chromatin remodeling factors, developmental transition, embryo, seed germination


title: pkl_2


title: Upkl_4

source_name: germinating seeds of pkl mutant plus uniconazole-P


title: Uwt_1

description:
Expression data from germinating seeds of Columbia plus Uniconazole-P.
Keywords = CHD3, chromatin remodeling factors, developmental transition, embryo, seed germination


title: Uwt_2

source_name: germinating seeds of Columbia plus Uniconazole-P


title: wt_2


title: Upkl_3


title: 121508602 [1670-1671]

description: Genotypes are individuals from the progeny of a Eucalyptus grandis backcross family. Differentiating xylem was collected from 20-month-old trees during the peak of the growing season.

source_name: Genotype 1670


title: 121508561 [1669-1670]

source_name: Genotype 1669


title: 121508571 [1667-1669]

source_name: Genotype 1667


title: pkl_3


title: 121508601 [1666-1667]

source_name: Genotype 1666


title: wt_1


title: Control_1

status: Public on Jul 07 2003

city: Tuebingen

first: Javier

middle: Fernando

last: Palatnik

address: 37-39 Spemannstrasse

country: Germany

institute: Max Planck Institute

description: total RNA was extracted from the aerial part of two weeks old plants.

source_name: Columbia


title: Uwt_4


title: Upkl_2


title: pkl_1


title: Gastrointestinal Stroma Tumor: patient GIST-12, tumor tissue, 1st repetition [2]

status: Public on Jul 01 2003

city: Heidelberg

first: Wolfgang

last: Huber

address: Im Neuenheimer Feld 280

department: Molecular Genome Analysis

institute: German Cancer Research Center

description:
patientid=GIST-12
sex=m
age=45
birthyear=1951
stage=primary
type=GIST
tumorsite=mesentery
survival_months=37
died=no
tumorsize.cm=5
CD34_expression=no
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=15
mucosal_ulceration=(not available)
metastases_or_recurrence=yes
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from mesentery
Lot batch = filter=3624135 reuse=4 date=05-Feb-2001

source_name: Gastrointestinal Stroma Tumor


title: Gastrointestinal Stroma Tumor: patient GIST-20, tumor tissue, 1st repetition

description:
patientid=GIST-20
sex=f
age=65
birthyear=1934
stage=primary
type=GIST
tumorsite=stomach
survival_months=18
died=no
tumorsize.cm=5
CD34_expression=yes
SMA_expression=no
S100_expression=yes
mitoses_in_10_hpf=NaN
mucosal_ulceration=yes
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211239 reuse=4 date=23-Jan-2001


title: Control 6

status: Public on Jun 25 2003

city: Philadelphia

first: Roderic

last: Eckenhoff

state: PA

institute: University of Pennsylvania

description:
3 min exposure to halothane, immediate perfusion with ice cold saline
Keywords = Eckenhoff, anesthetics

source_name: whole brain


title: Gastrointestinal Stroma Tumor: patient GIST-21, tumor tissue, 1st repetition

description:
patientid=GIST-21
sex=f
age=61
birthyear=1938
stage=primary
type=GIST
tumorsite=stomach
survival_months=6
died=no
tumorsize.cm=30
CD34_expression=yes
SMA_expression=no
S100_expression=yes
mitoses_in_10_hpf=17
mucosal_ulceration=(not available)
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211234 reuse=4 date=23-Jan-2001


title: Gastrointestinal Stroma Tumor: patient GIST-18, tumor tissue, 1st repetition [2]

description:
patientid=GIST-18
sex=m
age=53
birthyear=1945
stage=primary
type=GIST
tumorsite=stomach
survival_months=12
died=no
tumorsize.cm=7
CD34_expression=yes
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=4
mucosal_ulceration=(not available)
metastases_or_recurrence=yes
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624123 reuse=4 date=01-Feb-2001


title: Gastrointestinal Stroma Tumor: patient GIST-22, tumor tissue, 1st repetition [2]

description:
patientid=GIST-22
sex=m
age=59
birthyear=1940
stage=primary
type=GIST
tumorsite=duodenum
survival_months=18
died=no
tumorsize.cm=15
CD34_expression=yes
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=NaN
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from duodenum
Lot batch = filter=3624122 reuse=4 date=23-Jan-2001


title: 14 days, repeat 1

status: Public on Jun 23 2003

first: Robert

middle: Joseph

last: Feezor

address: 1600 SW Archer Road, Room 6116

department: Surgery

description:
Investigation into murine dermal burn wound.
Mouse thermal injury induced, and skin excised at different times post-injury.

source_name: Murine skin


title: Gastrointestinal Stroma Tumor: patient GIST-20, tumor tissue, 1st repetition [2]

description:
patientid=GIST-20
sex=f
age=65
birthyear=1934
stage=primary
type=GIST
tumorsite=stomach
survival_months=18
died=no
tumorsize.cm=5
CD34_expression=yes
SMA_expression=no
S100_expression=yes
mitoses_in_10_hpf=NaN
mucosal_ulceration=yes
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624131 reuse=4 date=23-Jan-2001


title: Gastrointestinal Stroma Tumor: patient GIST-19, tumor tissue, 1st repetition [2]

description:
patientid=GIST-19
sex=m
age=53
birthyear=1956
stage=primary
type=GIST
tumorsite=rectum
survival_months=10
died=no
tumorsize.cm=8
CD34_expression=yes
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=14
mucosal_ulceration=(not available)
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from rectum
Lot batch = filter=3624133 reuse=4 date=01-Feb-2001


title: 14 days, repeat 2


title: Halothane 5 exposures-1

description:
Two 90 minute exposures (3 hr recovery in between) to 0.8% halothane every day for 2.5 days, for a total of 5 exposures
Keywords = Eckenhoff, anesthetics


title: Gastrointestinal Stroma Tumor: patient GIST-16, tumor tissue, 1st repetition [2]

description:
patientid=GIST-16
sex=m
age=62
birthyear=1935
stage=primary
type=GIST
tumorsite=duodenum
survival_months=27
died=no
tumorsize.cm=10
CD34_expression=no
SMA_expression=yes
S100_expression=no
mitoses_in_10_hpf=6
mucosal_ulceration=yes
metastases_or_recurrence=yes
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from duodenum
Lot batch = filter=3623153 reuse=4 date=03-Feb-2001


title: Gastrointestinal Stroma Tumor: patient GIST-15, tumor tissue, 1st repetition [2]

description:
patientid=GIST-15
sex=f
age=45
birthyear=1952
stage=primary
type=GIST
tumorsite=stomach
survival_months=31
died=no
tumorsize.cm=4
CD34_expression=yes
SMA_expression=yes
S100_expression=no
mitoses_in_10_hpf=0
mucosal_ulceration=yes
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3623154 reuse=4 date=03-Feb-2001


title: Gastrointestinal Stroma Tumor: patient GIST-1, normal tissue, 1st repetition

description:
patientid=GIST-1
sex=m
age=67
birthyear=1929
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211235 reuse=2 date=12-Sep-2000

source_name: Normal tissue matched to Gastrointestinal Stroma Tumor


title: Human Nonpregnant vs. Pregnant Myometrium

status: Public on Jun 28 2003

city: Dallas

first: Khurram

middle: S

last: Rehman

address: 5323 Harry Hines Blvd

department: Obstetrics and Gynecology

institute: UT Southwestern Medical Center

description:
Fourteen samples of nonpregnant myometrium were obtained from uteri of women undergoing abdominal or vaginal hysterectomy for benign gynecological indications. Four pregnant myometrial specimens were obtained from the superior margin of the lower uterine segment incision at the time of cesarean section performed prior to the onset of labor at term, between 39 and 40 weeks of gestation. Tissues were dissected free of serosa, connective tissue, and major blood vessels, rinsed three times in PBS, and snap-frozen in liquid nitrogen until use.

Myometrial tissues were pulverized in liquid nitrogen and then homogenized in guanidinium isothiocyanate, followed by the isolation of total RNA following the method of Chirgwin et al. (PubMed ID 518835). Purity and integrity of the RNA were checked spectroscopically and by gel electrophoresis prior to use. Total mRNA from individual nonpregnant specimens was pooled, as were the pregnant specimens. Two successive oligo (dT) cellulose columns were then used to isolate poly A+ RNA for microarray analysis, yielding 600 ng of mRNA per channel (nonpregnant or pregnant myometrium). These were labeled with Cy3 and Cy5 dyes respectively prior to hybridization of over 200 ng labeled mRNA per channel with a UniGEM V cDNA microarray (Incyte Genomics, St Louis, MO).
Keywords = human myometrium nonpregnant pregnant

source_name: Pooled Human Nonpregnant Myometrium

source_name: Pooled Human Pregnant Myometrium


title: Gastrointestinal Stroma Tumor: patient GIST-11, tumor tissue, 2nd repetition [2]

description:
patientid=GIST-11
sex=m
age=74
birthyear=1925
stage=primary
type=GIST
tumorsite=stomach
survival_months=10
died=no
tumorsize.cm=3
CD34_expression=yes
SMA_expression=yes
S100_expression=no
mitoses_in_10_hpf=0
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3623157 reuse=3 date=04-Dec-2000


title: 14 days, repeat 3


title: Type 2 Gaucher brain

status: Public on Jun 24 2003

city: Bethesda

first: Richard

middle: Leonard

last: Proia

institute: NIDDK

description:
This library was constructed from mRNA derived from an eight month old female with type 2 Gaucher disease according to the SAGE protocol of V. E. Velculescu et al. (1995), in the laboratory of R. L.  Proia (NIDDK, NIH).
Sex: female
Organ: brain
Lab host DH10B
Vector: pZero
Vector type: plasmid
R. Site 1: Sph1
R. Site 2: Sph1
Library treatment: none
Tissue description: type 2 Gaucher patient
Tissue supplier: Cynthia Tifft
Sample type: cerebral cortex
Producer: R.L.Proia laboratory, NIDDK, NIH
Clones generated: 500
Sequences generated: 500
Keywords = Gaucher disease, sphingolipidoses, lysosomal storage disease, neurodegeneration

source_name: Type 2 Gaucher patient cerebral cortex gray matter, aged 8 months


title: Gastrointestinal Stroma Tumor: patient GIST-21, tumor tissue, 1st repetition [2]

description:
patientid=GIST-21
sex=f
age=61
birthyear=1938
stage=primary
type=GIST
tumorsite=stomach
survival_months=6
died=no
tumorsize.cm=30
CD34_expression=yes
SMA_expression=no
S100_expression=yes
mitoses_in_10_hpf=17
mucosal_ulceration=(not available)
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624121 reuse=4 date=23-Jan-2001


title: Halothane 5 exposures-3


title: Gastrointestinal Stroma Tumor: patient GIST-17, tumor tissue, 1st repetition

description:
patientid=GIST-17
sex=f
age=39
birthyear=1960
stage=primary
type=GIST
tumorsite=stomach
survival_months=4
died=no
tumorsize.cm=10
CD34_expression=no
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=1
mucosal_ulceration=(not available)
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211237 reuse=4 date=01-Feb-2001


title: Gastrointestinal Stroma Tumor: patient GIST-8, tumor tissue, 1st repetition

description:
patientid=GIST-8
sex=f
age=60
birthyear=1933
stage=primary
type=GIST
tumorsite=stomach
survival_months=14
died=yes
tumorsize.cm=12
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=11
mucosal_ulceration=(not available)
metastases_or_recurrence=yes
comment=retroperitoneal left upper abdominal cavity (stomach)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211248 reuse=2 date=27-Sep-2000


title: Halothane 5 exposures-2


title: Gastrointestinal Stroma Tumor: patient GIST-13, tumor tissue, 1st repetition [2]

description:
patientid=GIST-13
sex=m
age=64
birthyear=1933
stage=primary
type=GIST
tumorsite=stomach
survival_months=33
died=no
tumorsize.cm=6
CD34_expression=no
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=7
mucosal_ulceration=yes
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624134 reuse=4 date=05-Feb-2001


title: Gastrointestinal Stroma Tumor: patient GIST-14, tumor tissue, 1st repetition [2]

description:
patientid=GIST-14
sex=m
age=69
birthyear=1927
stage=(not available)
type=GIST
tumorsite=mesentery
survival_months=0
died=yes
tumorsize.cm=12
CD34_expression=no
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=20
mucosal_ulceration=(not available)
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from mesentery
Lot batch = filter=3623152 reuse=4 date=03-Feb-2001


title: Gastrointestinal Stroma Tumor: patient GIST-9, tumor tissue, 2nd repetition

description:
patientid=GIST-9
sex=m
age=67
birthyear=1929
stage=primary
type=GIST
tumorsite=stomach
survival_months=50
died=no
tumorsize.cm=7
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=4
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211248 reuse=3 date=04-Dec-2000


title: Control 1

description:
3 min exposure to halothane, sacrificed by cold saline perfusion.
Keywords = Eckenhoff anesthetics

source_name: Whole Brain


title: 3 days, repeat 2

description:
Investigation into murine dermal burn wound.
Mouse thermal injury induced, and skin excised at different times post-injury.


title: 2 hours, repeat 2


title: 0 hours, repeat 1


title: 0 hours, repeat 3


title: 3 days, repeat 3


title: WT, Gal batch, 60 min, LiCl

status: Public on Jun 21 2003

city: Kgs. Lyngby

first: Christoffer

last: Bro

address: Building 223

department: BioCentrum-DTU

country: Denmark

institute: Technical University of Denmark

description: Wild type strain CEN.PK113-7D from an aerobic batch cultivation with a start concentration of 20 g/L galactose. This sample was taken 60 minutes after addition of LiCl to a concentration of 10 mM.

source_name: Total RNA from aerobic cultivation on galactose with LiCl


title: WT, Gal batch, 40 min, LiCl

description: Wild type strain CEN.PK113-7D from an aerobic batch cultivation with a start concentration of 20 g/L galactose. This sample was taken 40 minutes after addition of LiCl to a concentration of 10 mM.


title: Kidney YC-5A

status: Public on Jun 19 2003

city: Madison

first: Tsuyoshi

last: Kayo

state: WI

address: 445 Henry Mall

institute: University of Wisconsin-Madison

description:
Gene expression data for comparing control-fed 30-month-old to 5-month-old mice to investigate effect of aging.
Keywords = kidney, aging, calorie restriction

source_name: Kidney of control-fed 5-month-old C57BL/6 mice


title: 2 hours, repeat 3


title: Kidney YC-4B


title: 3 days, repeat 1


title: Kidney YC-4A


title: 2 hours, repeat 1


title: WT, Gal batch, 0 min #2

description: Wild type strain CEN.PK113-7D from an aerobic batch cultivation with a start concentration of 20 g/L galactose. This sample was taken in exponential growth phase at a biomass concentration of 3 g dry weight/L just before addition of LiCl to a concentration of 10 mM. Three replicates labeled #1, #2 and #3 were perfomed from this time point.

source_name: Total RNA from aerobic cultivation on galactose


title: WT, Gal batch, 0 min #1


title: WT, Gal batch, 140 min, LiCl

description: Wild type strain CEN.PK113-7D from an aerobic batch cultivation with a start concentration of 20 g/L galactose. This sample was taken 140 minutes after addition of LiCl to a concentration of 10 mM.


title: WT, Gal batch, 20 min, LiCl

description: Wild type strain CEN.PK113-7D from an aerobic batch cultivation with a start concentration of 20 g/L galactose. This sample was taken 20 minutes after addition of LiCl to a concentration of 10 mM.


title: Kidney YC-2B


title: Kidney YC-3B


title: Kidney YC-1A


title: Kidney YC-1B


title: Kidney YC-5B


title: Kidney YC-2A


title: Kidney OC-5A

description:
Gene expression data for comparing control-fed 30-month-old to 5-month-old mice to investigate effect of aging and comparing calorie restricted-fed 30-month-old to control-fed 30-month-old to investigate effect of calorie restriction.
Keywords = kidney, aging, calorie restriction

source_name: Kidney in control-fed 30 month-old C57BL/6 mice


title: Kidney YC-3A


title: Kidney OC-5B


title: WT, Gal batch, 0 min #3


title: Kidney OC-4B


title: Kidney OC-3A


title: Kidney OC-3B


title: 123169591 [1682-1683]

description: Genotypes are individuals from the progeny of a Eucalyptus grandis backcross family. Differentiating xylem was collected from 20-month-old trees during the peak of the growing season. Total RNA was used in the labeling reactions.

source_name: Genotype 1683

source_name: Genotype 1682


title: Kidney CR-5B

description:
Gene expression data for comparing calorie restricted-fed 30-month-old to control-fed 30-month-old for investigating effect of calorie restriction.
Keywords = kidney, aging, calorie restriction

source_name: Kidney in calorie restricted-fed 30 month-old C57BL/6 mice


title: Kidney OC-2A


title: Kidney OC-2B


title: Kidney CR-4B


title: Kidney CR-5A


title: Kidney OC-1A


title: Kidney OC-1B


title: Kidney CR-1B


title: Kidney OC-4A


title: YER164W

status: Public on Jun 12 2003

city: Toronto

first: Timothy

middle: Richard

last: Hughes

state: ON

address: 112 College St.

department: Banting and Best Department of Medical Research

country: Canada

institute: University of Toronto

description: mutants grown in parallel 50 ml liquid SC cultures to 10 million cells per ml, harvested and extracted simultaneously.  See Peng, Robinson et al., 2003

source_name: Wild-Type


title: YER133W


title: YER168C


title: YER112W


title: Kidney CR-4A


title: YER146W


title: YER137C


title: YER093C


title: Kidney CR-1A


title: Kidney CR-3A


title: Kidney CR-3B


title: Kidney CR-2A


title: Uwt_3

description:
Expression data from germinating seeds of Columbia plus Uniconazole-P.
Keywords = CHD3, chromatin remodeling factors, developmental transition, embryo, seed germination


title: Kidney CR-2B


title: PBL_WBvWB2

status: Public on Jun 13 2003

first: Steven

middle: Paul

last: Suchyta

address: B215 Anthony Hall

description:
18ug of total RNA from a 23 day old female pig brain was split into two aliquots after cDNA synthesis.  Repeat of experiment in GEO accession GSM6837
Keywords = porcine brain, pig brain, brain

organism: Sus scrofa

source_name: Whole brain from a 23 day old female pig


title: PBL_WBvWB1

description:
18ug of total RNA from whole brain of a 23 day old female pig was split into 2 aliquots after cDNA synthesis, labeled and hybridized to microarray to provide background assesment of PBL microarray.
Keywords = brain, pig brain, porcine brain

source_name: Whole brain from 23 day old female pig


title: YER049W


title: YER074W


title: YER041W


title: YER020W


title: YER019W


title: YEL048C


title: YEL055C


title: Gastrointestinal Stroma Tumor: patient GIST-17, tumor tissue, 1st repetition [2]

description:
patientid=GIST-17
sex=f
age=39
birthyear=1960
stage=primary
type=GIST
tumorsite=stomach
survival_months=4
died=no
tumorsize.cm=10
CD34_expression=no
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=1
mucosal_ulceration=(not available)
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624124 reuse=4 date=01-Feb-2001

source_name: Gastrointestinal Stroma Tumor


title: YEL032W


title: YEL018W


title: YEL036C


title: YEL016C


title: YER006W


title: YDR489W


title: YDR478W


title: YDR471W


title: YDR418W


title: 0 hours, repeat 2

source_name: Murine skin


title: YDR532C


title: YDR432W


title: YDR527W


title: YDR449C


title: YDR346C


title: YDR378C


title: YDR412W


title: YDR473C


title: YER002W


title: YDR365C


title: YDR324C


title: YDR312W


title: YDR198C


title: YDR222W


title: YDR110W


title: YDR304C


title: YDR263C


title: YDR235W


title: YDR227W


title: YDR120C


title: YDR150W


title: YDR156W


title: YDR293C


title: YDR190C


title: YDR152W


title: YDR155C


title: YDR170C


title: YDR165W


title: YDR168W


title: YDL185W


title: YDR177W


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title: H1b, Total RNA

status: Public on May 27 2003

city: Rockville

first: Jo Ann

middle: S.

last: Rinaudo

address: 13 Taft Court, Suite 101

department: Microbiology

institute: Georgetown University

description:
Total RNA from adult human and woodchuck
liver was analyzed on human membrane arrays.
Two human and two woodchuck liver samples
were analyzed in duplicate.  The samples were
numbered H1a, H1b, H2a, H2b, WC1a, WC1b,
WC2a, and WC2b.  H, represents human liver;
WC represents woodchuck liver.  The numbers
1 and 2 were the two individual samples. The
a and b represent replicates of the same RNA
sample.
Keywords = liver, adult, normal, human
Lot batch = 1100638

source_name: Total RNA - liver


title: WC2a, Total RNA

description:
Total RNA from adult human and woodchuck
liver was analyzed on human membrane arrays.
Two human and two woodchuck liver samples
were analyzed in duplicate.  The samples were
numbered H1a, H1b, H2a, H2b, WC1a, WC1b,
WC2a, and WC2b.  H, represents human liver;
WC represents woodchuck liver.  The numbers
1 and 2 were the two individual samples. The
a and b represent replicates of the same RNA
sample.
Keywords = liver, adult, normal, woodchuck
Lot batch = 3385

organism: Marmota monax


title: H2b, Total RNA

description:
Total RNA from adult human and woodchuck
liver was analyzed on human membrane arrays.
Two human and two woodchuck liver samples
were analyzed in duplicate.  The samples were
numbered H1a, H1b, H2a, H2b, WC1a, WC1b,
WC2a, and WC2b.  H, represents human liver;
WC represents woodchuck liver.  The numbers
1 and 2 were the two individual samples. The
a and b represent replicates of the same RNA
sample.
Keywords = liver, adult, normal, human
Lot batch = 0510822


title: WC2b, Total RNA


title: Testes of hpg mice T+T (2)

status: Public on May 28 2003

city: Pullman

first: Patricia

middle: Imele

last: Sadate-Ngatchou

state: WA

department: School of Molecular Biosciences

institute: Washington State University

description:
Transcriptome of testes of hypogonadal mice that had been pretreated with testosterone proprionate for 2 weeks then submitted to testosterone withdrawal.
Keywords = testis, hypogonadal mice, testosterone

source_name: testis


title: Total RNA, 5ug

description:
Total RNA from adult woodchuck liver was
analyzed on human membrane arrays.  The effect
of RNA concentration on signal intensity was
determined by using a series of RNA
concentrations (0.1 to 10ug).
Keywords = liver, adult, normal, woodchuck
Lot batch = 4255


title: WC1a, Total RNA

description:
Total RNA from adult human and woodchuck
liver was analyzed on human membrane arrays.
Two human and two woodchuck liver samples
were analyzed in duplicate.  The samples were
numbered H1a, H1b, H2a, H2b, WC1a, WC1b,
WC2a, and WC2b.  H, represents human liver;
WC represents woodchuck liver.  The numbers
1 and 2 were the two individual samples. The
a and b represent replicates of the same RNA
sample.
Keywords = liver, adult, normal, woodchuck
Lot batch = 4255


title: ATMDS vs Normals (Replicate 1)

status: Public on Jun 06 2003

city: Oxford

first: Andrea

last: Pellagatti

address: John Radcliffe Hospital

department: NDCLS, RDM

country: United Kingdom

institute: University of Oxford

description: The patient RNA was compared to the normal RNA pool using a T7-based amplification method: 1 microgram of total RNA was reverse-transcribed using a T7-oligodT primer and then labelled aRNAs produced via in vitro transcription in the presence of either Cy3-UTP or Cy5-UTP. The labelled aRNAs were then purified and hybridized competitively to the microarray.

source_name: Granulocytes from 7 healthy controls (RNA pooled)

source_name: Granulocytes from ATMDS patient


title: H2a, Total RNA


title: WC1b, Total RNA


title: Total RNA, 2ug


title: ATMDS vs Normals (Replicate 2)


title: Total RNA, 10ug


title: Testes of hpg mice T+O

description:
Transcriptome from testes of hypogonadal mice that had been pretreated for 2 weeks with testosterone proprionate then submitted to testosterone withdrawal.
Keywords = testis, hypogonadal mice, testosterone treatment


title: Total RNA, 1ug


title: Replication 3 Aldo

status: Public on May 22 2003

middle: L.

last: Gumz

address: 1600 SW Archer Rd

department: Biochemistry and Molecular Biology

description: mIMCD3 cells were treated for 1 hour with vehicle (control) or aldosterone. Total RNA was isolated and used as template to generate the eventual cRNA target. The experiment was repeated a total of three times. Six cRNA samples, three control and three treated, were generated and used in a total of six hybridizations. This data set represents the aldosterone-treated sample for replication 3.

source_name: mIMCD3 cells


title: Total RNA, 0.25ug


title: Total RNA, 0.1ug

description:
Total RNA from adult woodchuck liver was
analyzed on human membrane arrays.  The effect
of RNA concentration on signal intensity was
determined by using a series of RNA
concentratons (0.1 to 10ug).

Keywords = liver, adult, normal, woodchuck
Lot batch = 4255


title: Replication 2 Aldosterone

description: mIMCD3 cells were treated for 1 hour with vehicle (control) or aldosterone. Total RNA was isolated and used as template to generate the eventual cRNA target. The experiment was repeated a total of three times. Six cRNA samples, three control and three treated, were generated and used in a total of six hybridizations. This data set represents the aldosterone-treated sample for replication 2.


title: YGR085C


title: Replication 1 Aldosterone

description: mIMCD3 cells were treated for 1 hour with vehicle (control) or aldosterone. Total RNA was isolated and used as template to generate the eventual cRNA target. The experiment was repeated a total of three times. Six cRNA samples, three control and three treated, were generated and used in a total of six hybridizations. This data set represents the aldosterone-treated sample for replication 1.


title: Replication 2 Control

description: mIMCD3 cells were treated for 1 hour with vehicle (control) or aldosterone. Total RNA was isolated and used as template to generate the eventual cRNA target. The experiment was repeated a total of three times. Six cRNA samples, three control and three treated, were generated and used in a total of six hybridizations. This data set represents the control sample for replication 2.


title: Total RNA, 0.5ug


title: Testes of hpg mice T+T


title: Replication 1 control

description: mIMCD3 cells were treated for 1 hour with vehicle (control) or aldosterone. Total RNA was isolated and used as template to generate the eventual cRNA target. The experiment was repeated a total of three times. Six cRNA samples, three control and three treated, were generated and used in a total of six hybridizations. This data set represents the control sample for replication 1.


title: Replication 3 Control

description: mIMCD3 cells were treated for 1 hour with vehicle (control) or aldosterone. Total RNA was isolated and used as template to generate the eventual cRNA target. The experiment was repeated a total of three times. Six cRNA samples, three control and three treated, were generated and used in a total of six hybridizations. This data set represents the control sample for replication 3.


title: after 24h treatment with 3 mM aspirin

status: Public on May 19 2003

first: Anja

last: Germann

department: Department of Pathology

institute: University Heidelberg

description: CC531 cells in response to 24h treatment with 3 mM aspirin

source_name: CC531 colon carcinoma cells


title: after 6h treatment with 4.5 mM butyrate

description: CC531 cells in reponse to 6h treatment with 4.5 mM butyrate


title: ATMDS vs Normals (Replicate 3)


title: after 24h treatment with 4.5 mM butyrate

description: CC531 cells in response to 24h treatment with 4.5 mM butyrate


title: after 12h treatment with 4.5 mM butyrate

description: CC531 cells in response to 12h treatment with 4.5 mM butyrate


title: after 2h treatment with 3 mM aspirin

description: CC531 cells in reponse to 2h treatment with 3 mM aspirin


title: after 12h treatment with 3 mM aspirin

description: CC531 cells in response to 12h treatment with 3 mM aspirin


title: after 6h treatment with 3 mM aspirin

description: CC531 cells in response to 6h treatment with 3 mM aspirin


title: after 2h 4.5 mM butyrate

description: CC531 cells in response to 2h treatment with 4.5 mM butyrate


title: after 16h treatment with 4.5 mM butyrate

description: CC531 cells in response to 16h treatment with 4.5 mM butyrate


title: Lymph vs Lymph #3

status: Public on May 21 2003

description:
Bovine lymph versus lymph tissue using the NBFGC cDNA microarray.
Keywords = bovine, cDNA, microarray, lymph

source_name: bovine lymph tissue


title: after 16h treatment with 3 mM aspirin

description: CC531 cells in response to 16h treatment with 3 mM aspirin


title: untreated after 2h

description: untreated CC531 cells


title: Lymph vs Lymph #2


title: untreated after 24h

description: CC531 cells after 24h


title: Adrenal vs adrenal #3

description:
Bovine adrenal versus adrenal tissue using the NBFGC cDNA microarray.
Keywords = bovine, cDNA, microarray, adrenal gland

source_name: bovine adrenal tissue


title: Lymph vs. Lymph #1

description:
Bovine lymph versus lymph tissue using the NBFGC cDNA microarray.
Keywords = bovinr, cDNA, microarray, lymph


title: Adrenal vs. Adrenal #1

description:
Bovine adrenal versus adrenal tissue using the NBFGC cDNA microarray.
Keywords = bovine, microarray, cDNA, adrenal gland


title: Adrenal vs Adrenal #2