title: liver, 48h sugar, chip 9

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 4 animals (No. N7, N8, N9 and N10) fed during and before the 48h experiment with standard food, ad libitum; pool3 sugar = 4 animals (No. Su7, Su8, Su9 and Su10) fed before the experiment with standard food, ad libitum, during the 48h experiment with 50% (w/v) sugar solution (40% glucose, 10% sucrose).
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 4 animals (No. N7, N8, N9 and N10) fed during and before the 48h experiment with standard food, ad libitum; pool3 sugar = 4 animals (No. Su7, Su8, Su9 and Su10) fed before the experiment with standard food, ad libitum, during the 48h experiment with 50% (w/v) sugar solution (40% glucose, 10% sucrose).
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp8_014


title: liver, 48h starved, chip 2

status: Public on Feb 09 2004

type: RNA

city: Karlsruhe

first: Michael

middle: J.

last: Pankratz

department: Institute of Genetics

country: Germany

institute: Forschungszentrum Karlsruhe

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 4 animals (No. N7, N8, N9 and N10) fed during and before the 48h experiment with standard food, ad libitum; pool3 starved = 4 animals (No. St7, St8, St9 and St10) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp6_028

molecule: total RNA

organism: Mus musculus

source_name: pool3, starved

source_name: pool3, normal


title: liver, 48h sugar, chip 4

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool2 normal = 3 animals (No. N4, N5 and N6) fed during and before the 48h experiment with standard food, ad libitum; pool2 sugar = 3 animals (No. Su4, Su5 and Su6) fed before the experiment with standard food, ad libitum, during the 48h experiment with 50% (w/v) sugar solution (40% glucose, 10% sucrose).
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_059

source_name: pool2, sugar

source_name: pool2, normal


title: liver, 48h starved, chip 5

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 4 animals (No. N7, N8, N9 and N10) fed during and before the 48h experiment with standard food, ad libitum; pool3 starved = 4 animals (No. St7, St8, St9 and St10) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp6_031


title: liver, 48h starved, chip 8

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 4 animals (No. N7, N8, N9 and N10) fed during and before the 48h experiment with standard food, ad libitum; pool3 starved = 4 animals (No. St7, St8, St9 and St10) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp6_034


title: liver, 48h sugar, chip 1

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 48h experiment with standard food, ad libitum; pool3 sugar = 3 animals (No. Su1, Su2 and Su3) fed before the experiment with standard food, ad libitum, during the 48h experiment with 50% (w/v) sugar solution (40% glucose, 10% sucrose).
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_054

source_name: pool1, sugar

source_name: pool1, normal


title: liver, 48h sugar, chip 2

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool2 normal = 3 animals (No. N4, N5 and N6) fed during and before the 48h experiment with standard food, ad libitum; pool2 sugar = 3 animals (No. Su4, Su5 and Su6) fed before the experiment with standard food, ad libitum, during the 48h experiment with 50% (w/v) sugar solution (40% glucose, 10% sucrose).
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_056

source_name: pool2 normal


title: liver, 48h sugar, chip 8

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 48h experiment with standard food, ad libitum; pool1 sugar = 3 animals (No. Su1, Su2 and Su3) fed before the experiment with standard food, ad libitum, during the 48h experiment with 50% (w/v) sugar solution (40% glucose, 10% sucrose).
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp8_013


title: liver, 48h starved, chip 9

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 48h experiment with standard food, ad libitum; pool1 starved = 3 animals (No. St1, St2 and St3) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_020

source_name: pool1, starved


title: Drerio03MaU-030303body01 / Drerio03MaU-030303brain01 HYB p1.00s67a1NAH030314

status: Public on Feb 05 2004

city: Austin

first: Hans

middle: A.

last: Hofmann

state: TX

address: 1 University Station - C0930

department: Section of Integrative Biology

country: USA

institute: Universit of Texas at Austin

description:
Brain-Body experiments for Heterologous Hybridization Renn et al 2004.
Keywords = Cichlid Brain

organism: Danio rerio

source_name: Drerio03 body

source_name: Drerio03 brain


title: Preticulata02MaU-030303body01 / Preticulata02MaU-030303brain01 HYB p1.00s69a1SCRP

organism: Poecilia reticulata

source_name: Preticulata02 body

source_name: reticulate02 brain


title: Emelanogenys07MaU-030117body02 / Emelanogenys07MaU-030117brain01 HYB p1.00s64a1NAH

organism: Xenotilapia melanogenys

source_name: Emelanogenys07 body

source_name: Emelanogenys07 brain


title: Oniloticus01FaU-021130muscle01 / Oniloticus01FaU-021130brain01 HYB p1.00s66b1SCRP

organism: Oreochromis niloticus

source_name: Tilapia body

source_name: Tilapia brain


title: liver, 48h sugar, chip 10

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool3 normal = 4 animals (No. N7, N8, N9 and N10) fed during and before the 48h experiment with standard food, ad libitum; pool3 sugar = 4 animals (No. Su7, Su8, Su9 and Su10) fed before the experiment with standard food, ad libitum, during the 48h experiment with 50% (w/v) sugar solution (40% glucose, 10% sucrose).
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp8_015

source_name: pool3, sugar


title: Emelanogenys07MaU-030117brain01 / Emelanogenys07MaU-030117body02 HYB p1.00s76a3NAH030402


title: Emelanogenys07MaU-030117brain01 / Emelanogenys07MaU-030117body02 HYB p1.00s30b1SCPR


title: Leg 14 Day mdx rep 3

city: Cleveland

first: Henry

last: Kaminski

state: OH

address: 11100 Euclid Avenue

department: Neurology

institute: Case Western Reserve University

description:
Standard Affymetrix Protocol
Keywords = microarray
Keywords = muscle

source_name: 14 Day Mouse leg muscle


title: Oniloticus01FaU-021130brain01 / Oniloticus01FaU-021130muscle01 HYB p1.00s34b2SCRP


title: Preticulata02MaU-030303brain01 / Preticulata02MaU-030303body01 HYB p1.00s56a1NAH030305

source_name: guppy01 brain

source_name: guppy01 body


title: Xiphophorus?02MiU-030303body01 / Xiphophorus?02MiU-030303brain01 HYB p1.00s41b1NAH

organism: Xiphophorus

source_name: Xiphophorus body

source_name: Xiphophorus brain


title: Leg 14 day mdx rep 2


title: Nbrichardi11MaU-030210brain01 / Nbrichardi11MaU-030210body01 HYB p1.00s70a4NAH030319

organism: Neolamprologus brichardi

source_name: Nbrichardi11 brain

source_name: Nbrichardi11 body


title: Leg 14 Day mdx rep 1


title: Leg 23 Day Control rep 1

source_name: 23 Day Mouse leg muscle


title: Ssalar04MiU-021204brain01 / Ssalar04MiU-021204body01 HYB p1.00s40a1NAH030312

organism: Salmo salar

source_name: Ssalar04 brain

source_name: Ssalar04 body


title: Nbrichardi11MaU-030210body01 / Nbrichardi11MaU-030210brain01 HYB p1.00s25a2NAH030328

source_name: Nbrichardi brain


title: Xiphophorus?02MiU-030303brain01 / Xiphophorus?02MiU-030303body01 HYB p1.00s23a1NAH030305

source_name: swordtail02 brain

source_name: swordtail02 body


title: Leg 14 Day Control rep 3


title: Leg 14 Day Control rep 2


title: Ssalar04MiU-021204body01 / Ssalar04MiU-021204brain01 HYB p1.00s75a2NAH030402


title: Drerio03MaU-030303brain01 / Drerio03MaU-030303body01 HYB p1.00s08a1NAH030305

source_name: Drerio03 brain

source_name: Drerio03 body


title: Leg 14 Day Control rep 1


title: Aburtoni01MjNT-021217body01 / Aburtoni01MjNT-021217brain01 HYB p1.00s09b1NAH

description:
Brain - Body experiment for Heterologous hybridization Renn et al 2004
Keywords = cichlid
Keywords = brain

organism: Haplochromis burtoni

source_name: Aburtoni01 body

source_name: Aburtoni01 brain


title: Aburtoni04MaU-030129brain01-dTN6 / Aburtoni04MaU-030129body01-dTN6 HYB p1.00s74a1SCPR030618

source_name: Aburtoni04 brain

source_name: Aburtoni04 body


title: Aburtoni01MjNT-021217brain01 / Aburtoni01MjNT-021217body01 HYB p1.00s26a1NAH


title: Aburtoni02MjNT-021217body01 / Aburtoni02MjNT-021217brain01 HYB p1.00s78aSCPR030526


title: Aburtoni04MaU-030129body01-dT / Aburtoni04MaU-030129brain01-dT HYB p1.00s74b2SCPR030618


title: Aburtoni04MaU-030129body01 / Aburtoni04MaU-030129brain01 HYB p1.00s60aSCPR030525


title: Leg 7 Day mdx rep 3

description: Standard Affymetrix Protocol

source_name: 7 Day Mouse leg muscle


title: Leg 7 Day mdx rep 1

description: Standard Affymetrix Protocol

source_name: 7 Day Mouse Leg muscle


title: Leg 7 Day Control rep 3

description: Standard Affymetrix Protocol


title: Leg 7 Day Control rep 2

description: Standard Affymetrix Protocol


title: Leg 7 Day mdx rep 2

description: Standard Affymetrix Protocol


title: Aburtoni04MaU-030129brain01 / Aburtoni04MaU-030129body01-dT HYB p1.00s60bSCPR030525


title: Leg 7 Day Control rep 1

description: Standard Affymetrix Protocol


title: Aburtoni01MjNT-021217brain01 / Aburtoni01MjNT-021217body01 HYB p1.00s68b1NAH030402

description: Brain-Body experiment for Heterologous hybridization


title: Aburtoni01MjNT-021217body01 / Aburtoni01MjNT-021217brain01 HYB p1.00s88b3NAH030521

description: Brain - Body experiment for Heterologous hybridization Renn et al 2004


title: Normal human skeletal muscle sample 8

status: Public on Feb 04 2004

city: Boston

first: Judith

last: Haslett

state: MA

institute: Harvard Medical School

description:
biopsy muscle sample obtained from a 4-year-old female individual
Keywords = gene expression profile of normal human skeletal muscle
Keywords = Affymetrix HG-U95B

organism: Homo sapiens

source_name: Quadriceps


title: Aburtoni02MjNT-021217brain01 / Aburtoni02MjNT-021217body01 HYB p1.00s78bSCPR030526

source_name: Aburtoni02 brain

source_name: Aburtoni02 body


title: Normal human skeletal muscle sample 6

description:
biopsy muscle sample obtained from a 10-year-old male individual
Keywords = gene expression profile of normal human skeletal muscle
Keywords = Affymetrix HG-U95B


title: Aburtoni04MaU-030129body01 / Aburtoni04MaU-030129brain01 HYB p1.00s87a3NAH030521

description:
Brain-Body experiment for Heterologous hybridization
Renn et al 2004


title: Normal human skeletal muscle sample 7

description:
biopsy muscle sample obtained from a 1-year-old male individual
Keywords = gene expression profile of normal human skeletal muscle
Keywords = Affymetrix HG-U95B


title: Normal human skeletal muscle sample 11

description:
biopsy muscle sample obtained from a 36-year-old female individual
Keywords = gene expression profile of normal human skeletal muscle
Keywords = Affymetrix HG-U95B


title: Normal human skeletal muscle sample 5

description:
biopsy muscle sample obtained from a 4-year-old male individual
Keywords = gene expression profile of normal human skeletal muscle
Keywords = Affymetrix HG-U95B


title: Normal human skeletal muscle sample 9

description:
biopsy muscle sample obtained from a 5-year-old female individual
Keywords = gene expression profile of normal human skeletal muscle
Keywords = Affymetrix HG-U95B


title: EOM 112 Day mdx rep 3

description: Standard Affymetrix Protocol

source_name: 112 Day Mouse extraocular muscle


title: Normal human skeletal muscle sample 4

description:
biopsy muscle sample obtained from a 2-year-old male individual
Keywords = gene expression profile of normal human skeletal muscle
Keywords = Affymetrix HG-U95B


title: EOM 28 Day Control rep 3

source_name: 28 Day Mouse extraocular muscle


title: EOM 112 Day mdx rep 2

description: Standard Affymetrix Protocol


title: EOM 112 Day mdx rep 1

description: Standard Affymetrix Protocol


title: Normal human skeletal muscle sample 3


title: Normal human skeletal muscle sample 3 (repeat)


title: Normal human skeletal muscle sample 1

description:
biopsy muscle sample obtained from a 17-year-old female individual
Keywords = gene expression profile of normal human skeletal muscle
Keywords = Affymetrix HG-U95B


title: EOM 112 Day Control rep 3

description: Standard Affymetrix Protocol


title: EOM 112 Day Control rep 2

description: Standard Affymetrix Protocol


title: EOM 28 Day Control rep 2


title: Normal human skeletal muscle sample 2

description:
biopsy muscle sample obtained from a 13-year-old male individual
Keywords = gene expression profile of normal human skeletal muscle
Keywords = Affymetrix HG-U95B


title: liver, 48h starved, chip 11

description:
Mice used in this study were 129/sv males, 8-15 weeks of age, which were housed individually and received water ad libitum. Total RNA and polyA RNA were prepared for each animal separately, and equal amounts of polyA RNA from each batch were pooled. Pool1 normal = 3 animals (No. N1, N2 and N3) fed during and before the 48h experiment with standard food, ad libitum; pool1 starved = 3 animals (No. St1, St2 and St3) fed before the experiment with standard food, ad libitum, starved during the 48h experiment.
The microarray was scanned 3 times: low scan (suffix _L in data table) with a low amplification / intensity to avoid saturated spots for proper data analysis, high scan (suffix _H in data table) with a high amplification / intensity to detect also weak fluorescent spots which are missed in the low scan and medium scan which lies between high and low intensity and gives additional data points for subsequent calculations. For additional information see publication and web link.
Keywords = nutrient response
Keywords = starvation
Keywords = liver
Keywords = anti-aging
Keywords = longevity
Lot batch = mp7_022

source_name: pool1, starved

source_name: pool1, normal


title: normal Human skeletal muscle sample 9

description:
biopsy muscle sample obtained from a 5-year-old female individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95E


title: normal Human skeletal muscle sample 11

description:
biopsy muscle sample obtained from a 36-year-old female individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95E


title: normal Human skeletal muscle sample 2

description:
biopsy muscle sample obtained from a 13-year-old male individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95E


title: EOM 56 Day Control rep 3

description: Standard Affymetrix Protocol

source_name: 56 Day Mouse extraocular muscle


title: normal Human skeletal muscle sample 7

description:
biopsy muscle sample obtained from a 1-year-old male individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95E


title: normal Human skeletal muscle sample 4(repeat)

description:
biopsy muscle sample obtained from a 2-year-old male individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95E


title: EOM 112 Day Control rep 1

description: Standard Affymetrix Protocol


title: normal Human skeletal muscle sample 4


title: normal Human skeletal muscle sample 6

description:
biopsy muscle sample obtained from a 10-year-old male individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95E


title: EOM 56 Day Control rep 1

description:
Standard Affymetrix Protocol
Keywords = microarray
Keywords = muscle

source_name: 56 Day MOuse extraocular muscle


title: Normal Human Skeletal muscle sample 4(repeat)

description:
biopsy muscle sample obtained from a 2-year-old male individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95D


title: normal Human skeletal muscle sample 5

description:
biopsy muscle sample obtained from a 4-year-old male individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95E


title: EOM 56 Day Control rep 2


title: normal Human skeletal muscle sample 8

description:
biopsy muscle sample obtained from a 4-year-old female individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95E


title: EOM 56 Day mdx rep 3

description: Standard Affymetrix Protocol


title: normal Human skeletal muscle sample  3


title: Normal Human Skeletal muscle sample 9

description:
biopsy muscle sample obtained from a 5-year-old female individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95D


title: Normal Human Skeletal muscle sample 8

description:
biopsy muscle sample obtained from a 4-year-old female individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95D


title: EOM 56 Day mdx rep 2

description: Standard Affymetrix Protocol


title: normal Human skeletal muscle sample 1

description:
biopsy muscle sample obtained from a 17-year-old female individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95E


title: EOM 56 Day mdx rep 1

description: Standard Affymetrix Protocol


title: Normal Human skeletal muscle sample 9(repeat)

description:
biopsy muscle sample obtained from a 5-year-old female individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95C


title: Normal Human Skeletal muscle sample 6

description:
biopsy muscle sample obtained from a 10-year-old male individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95D


title: Normal Human skeletal muscle sample 11

description:
biopsy muscle sample obtained from a 36-year-old female individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95C


title: Normal Human Skeletal muscle sample 11

description:
biopsy muscle sample obtained from a 36-year-old female individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95D


title: EOM 28 Day mdx rep 3


title: Normal Human skeletal muscle sample 9


title: EOM 28 Day mdx rep 2


title: Normal Human Skeletal muscle sample 5

description:
biopsy muscle sample obtained from a 4-year-old male individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95D


title: EOM 14 Day mdx rep 3

description:
Standard Affymetrix Protocal
Keywords = microarray
Keywords = muscle

source_name: 14 Day Mouse extraocular muscle


title: Normal Human skeletal muscle sample 7

description:
biopsy muscle sample obtained from a 1-year-old male individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95C


title: EOM 28 Day Control rep 1


title: EOM 14 Day mdx rep 1


title: EOM 14 Day COntrol rep 3


title: Normal Human Skeletal muscle sample 7

description:
biopsy muscle sample obtained from a 1-year-old male individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95D


title: Normal Human skeletal muscle sample 8

description:
biopsy muscle sample obtained from a 4-year-old female individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95C


title: EOM 14 Day mdx rep 2


title: EOM 28 Day mdx rep 1


title: Normal Human skeletal muscle sample 4

description:
biopsy muscle sample obtained from a 2-year-old male individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95C


title: Normal Human Skeletal muscle sample 4


title: Normal Human Skeletal muscle sample 3


title: Normal Human skeletal muscle sample 6

description:
biopsy muscle sample obtained from a 10-year-old male individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95C


title: filament09

status: Public on Feb 02 2004

city: Seattle

first: Timothy

last: Galitski

state: WA

address: 1441 N. 34th Street

institute: Institute for Systems Biology

description: Wild-type diploid cells were shifted from yeast-form growth in SHAD liquid (plentiful glucose and ammonium) to filamentous-form growth on SLAD agar (low ammonium). Filamentous-form and yeast-form targets were co-hybridized.

organism: Saccharomyces cerevisiae

source_name: filamentous-form 9 hour

source_name: yeast-form


title: Normal Human skeletal muscle sample 2

description:
biopsy muscle sample obtained from a 13-year-old male individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95C


title: Normal Human Skeletal muscle sample 2

description:
biopsy muscle sample obtained from a 13-year-old male individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95D


title: EOM 14 Day Control rep 1


title: EOM 14 Day Control rep 2


title: Normal Human skeletal muscle sample 3


title: filament10

source_name: filamentous-form 10 hour


title: Normal Human skeletal muscle sample 1

description:
biopsy muscle sample obtained from a 17-year-old female individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95C


title: filament05

source_name: filamentous-form 5 hour


title: Normal Human Skeletal muscle sample 1

description:
biopsy muscle sample obtained from a 17-year-old female individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95D


title: filament03

source_name: filamentous-form 3 hour


title: filament02

source_name: filamentous-form 2 hour


title: filament07

source_name: filamentous-form 7 hour


title: Normal Human skeletal muscle sample 5

description:
biopsy muscle sample obtained from a 4-year-old male individual
Keywords = Gene expression profiles of normal human skeletal muscle sample
Keywords = Affymetrix HG-U95C

source_name: Quadriceps


title: filament08

source_name: filamentous-form 8 hour


title: filament04

source_name: filamentous-form 4 hour


title: filament06

source_name: filamentous-form 6 hour


title: filament01

source_name: filamentous-form 1 hour


title: Human T lymphocyte and myeloid microarray experiments29

status: Public on Feb 01 2004

city: Kirkland

first: Mao

last: Mao

department: Biology

institute: Rosetta Inpharmatics

description: Human RNA

source_name: untreated

source_name: NB4/ATRA, 0hr


title: Human T lymphocyte and myeloid microarray experiments31

description: Human RNA

source_name: NB4/ATRA, 2hr


title: Human T lymphocyte and myeloid microarray experiments37

description: Human RNA

source_name: NB4/9cis RA 0hr


title: Human T lymphocyte and myeloid microarray experiments25

description: Human RNA

source_name: HL60/9cisRA 48hr


title: Human T lymphocyte and myeloid microarray experiments27

description: Human RNA

source_name: K562/PMA 24hr


title: G1E_30_C

city: Philadelphia

first: John

last: Welch

state: PA

address: 34th & Civic Center Blvd.

department: Division of Hematology

institute: Children's Hospital of Philadelphia

description: G1E cells are a Gata-1 erythroid-committed cell line derived from targeted disruption of Gata-1 in embryonic stem cells. The ER4 subclone contains an inducible form of Gata-1 (Gata-1-ER, Gata-1 fused to the estradiol ligand binding domain). We performed transcriptome analysis using this cell line. Estradiol was added to culture medium triggering synchronous and homogenous differentiation. At various time points, RNA was sampled and analyzed using the Affymetrix MG-U74Av2 platform. Three biological replicas (A,B, and C) were performed. The thirty hour time course corresponds to development from the late BFU-E stage through the orthochromatic erythroblast stage.

source_name: G1E, ER4 clone, 30 hours post-estradiol


title: Human T lymphocyte and myeloid microarray experiments26

description: Human RNA

source_name: K562/PMA 6hr


title: Human T lymphocyte and myeloid microarray experiments30

description: Human RNA

source_name: NB4/ATRA, 0.5hr


title: Human T lymphocyte and myeloid microarray experiments42

description: Human RNA

source_name: NB4/PMA 24hr


title: Human T lymphocyte and myeloid microarray experiments41

description: Human RNA

source_name: NB4/PMA 6hr


title: Human T lymphocyte and myeloid microarray experiments28

description: Human RNA

source_name: K562/PMA 48hr


title: Human T lymphocyte and myeloid microarray experiments38

description: Human RNA

source_name: NB4/9cis RA 6hr


title: Human T lymphocyte and myeloid microarray experiments36

description: Human RNA

source_name: NB4/ATRA, 72hr


title: Human T lymphocyte and myeloid microarray experiments39

description: Human RNA

source_name: NB4/9cis RA 24hr


title: Human T lymphocyte and myeloid microarray experiments24

description: Human RNA

source_name: HL60/ATRA 48hr


title: Human T lymphocyte and myeloid microarray experiments40

description: Human RNA

source_name: NB4/9cis RA 48hr


title: Human T lymphocyte and myeloid microarray experiments20

description: Human RNA

source_name: untreated

source_name: HL60/PMA 6hr


title: Human T lymphocyte and myeloid microarray experiments32

description: Human RNA

source_name: NB4/ATRA, 8hr


title: Human T lymphocyte and myeloid microarray experiments21

description: Human RNA

source_name: HL60/PMA 24hr


title: Human T lymphocyte and myeloid microarray experiments19

description: Human RNA

source_name: THP-1/LPS 24hr


title: Human T lymphocyte and myeloid microarray experiments22

description: Human RNA

source_name: HL60/ATRA 6hr


title: Human T lymphocyte and myeloid microarray experiments35

description: Human RNA

source_name: NB4/ATRA, 48hr


title: Human T lymphocyte and myeloid microarray experiments34

description: Human RNA

source_name: NB4/ATRA, 24hr


title: Human T lymphocyte and myeloid microarray experiments23

description: Human RNA

source_name: HL60/ATRA 24hr


title: Human T lymphocyte and myeloid microarray experiments18

description: Human RNA

source_name: THP-1/LPS 12hr


title: Human T lymphocyte and myeloid microarray experiments33

description: Human RNA

source_name: NB4/ATRA, 16hr


title: Human T lymphocyte and myeloid microarray experiments16

description: Human RNA

source_name: THP-1/LPS 4hr


title: Human T lymphocyte and myeloid microarray experiments17

description: Human RNA

source_name: THP-1/LPS 6hr


title: G1E_21_C

source_name: G1E, ER4 clone, 21 hours post-estradiol


title: G1E_21_B

source_name: G1E, ER4 clone,21 hours post-estradiol


title: G1E_30_B

source_name: G1E, ER4 clone, 30 hours post-estradiol


title: G1E_7_B

source_name: G1E, ER4 clone, 7 hours post-estradiol


title: G1E_21_A


title: G1E_14_B

source_name: G1E, ER4 clone, 14 hours post-estradiol


title: G1E_3_C

source_name: G1E, ER4 clone, 3 hours post-estradiol


title: G1E_3_B


title: sir4 null mutant strain

city: Milano

first: Marina

last: Vai

address: p.zza della Scienza 2

country: Italy

institute: Università degli Studi di Milano-Bicocca

description:
Transcriptional data obtained from hybridization on Yeast Genome S98 Array, Affymetrix.
Data analysis performed with MAS 4.0 software.
Keywords = deubiquitinating enzymes
Keywords = yeast

source_name: Exponentially growing cells of sir4 null mutant strain


title: G1E_0_C

source_name: G1E, ER4 clone, no estradiol


title: G1E_14_A


title: G1E_14_C


title: G1E_7_C


title: G1E_7_A


title: Human T lymphocyte and myeloid microarray experiments11

description: Human RNA

source_name: untreated

source_name: Jurkat Vb8+CD28+PMA 8hr


title: Human T lymphocyte and myeloid microarray experiments14

description: Human RNA

source_name: THP-1/LPS 0hr


title: Human T lymphocyte and myeloid microarray experiments5

description: Human RNA

source_name: PHA blasts, CD3 + CD28, 6 hrs


title: G1E_0_B


title: Human T lymphocyte and myeloid microarray experiments8

description: Human RNA

source_name: Jurkat Vb8+CD28+PMA 1hr


title: Human T lymphocyte and myeloid microarray experiments13

description: Human RNA

source_name: THP-1/PMA activated


title: Human T lymphocyte and myeloid microarray experiments15

description: Human RNA

source_name: THP-1/LPS 2hr


title: Human T lymphocyte and myeloid microarray experiments4

description: Human RNA

source_name: PHA blasts, CD3 + CD28, 2 hrs


title: Human T lymphocyte and myeloid microarray experiments9

description: Human RNA

source_name: Jurkat Vb8+CD28+PMA 2hr


title: Human T lymphocyte and myeloid microarray experiments7

description: Human RNA

source_name: PHA blasts, CD3 + CD28, 18 hrs


title: Human T lymphocyte and myeloid microarray experiments12

description: Human RNA

source_name: Jurkat Vb8+CD28+PMA 16hr


title: Human T lymphocyte and myeloid microarray experiments3

description: Human RNA

source_name: PHA blasts, CD3 + CD28, 0.5 hrs


title: Human T lymphocyte and myeloid microarray experiments6

description: Human RNA

source_name: PHA blasts, CD3 + CD28, 12 hrs


title: ubp10sir4 double null mutant

source_name: Exponentially growing cells of ubp10sir4 double null mutant strain


title: ubp10 null mutant

source_name: Exponentially growing cells of ubp10 null mutant strain


title: Human T lymphocyte and myeloid microarray experiments2

description: Human RNA

source_name: PHA blasts, CD3 + CD28, 0.25 hrs


title: Wild type strain (W303-1A)

source_name: Exponentially growing cells of W303-1A strain


title: G1E_0_A

description:
G1E cells are a Gata-1 erythroid-committed cell line derived from targeted disruption of Gata-1 in embryonic stem cells. The ER4 subclone contains an inducible form of Gata-1 (Gata-1-ER, Gata-1 fused to the estradiol ligand binding domain). We performed transcriptome analysis using this cell line. Estradiol was added to culture medium triggering synchronous and homogenous differentiation. At various time points, RNA was sampled and analyzed using the Affymetrix MG-U74Av2 platform. Three biological replicas (A,B, and C) were performed. The thirty hour time course corresponds to development from the late BFU-E stage through the orthochromatic erythroblast stage.
Keywords = Gata1, erythroid, mouse

source_name: G1E, ER4 clone, no estradiol


title: G1E_3_A

description:
G1E cells are a Gata-1 erythroid-committed cell line derived from targeted disruption of Gata-1 in embryonic stem cells.  The ER4 subclone contains an inducible form of Gata-1 (Gata-1-ER, Gata-1 fused to the estradiol ligand binding domain).  We performed transcriptome analysis using this cell line.  Estradiol was added to culture medium triggering synchronous and homogenous differentiation.  At various time points, RNA was sampled and analyzed using the Affymetrix MG-U74Av2 platform.  Three biological replicas (A,B, and C) were performed.  The thirty hour time course corresponds to development from the late BFU-E stage through the orthochromatic erythroblast stage.
Keywords = Gata1, erythroid, mouse

source_name: G1E, ER4 clone, 3 hours post-estradiol


title: Human T lymphocyte and myeloid microarray experiments1

description: Human RNA

source_name: untreated

source_name: PHA blasts, CD3 + CD28, 0 hrs


title: AML9

status: Public on Jan 30 2004

city: Cambridge

first: Ken

last: Ross

address: 7 Cambridge Center

department: Cancer Genomics

institute: Broad Institute

description:
Adult AML sample obtained from the Cancer and Leukemia Group (CALGB) leukemia bank, collected and processed as previously reported in Golub et al., Science, 286 (1999), p531-537. Samples were selected without regard to immunophenotype, cytogenetics, or other molecular features. Hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = AML
Keywords = leukemia

source_name: primary patient AML cells


title: cyc2

description:
HL-60 cells purchased from ATCC and treated with 7.5 uM cyclazosin HCl for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = Leukemia
Keywords = AML
Keywords = HL-60

source_name: HL-60 cells treated with cyclazosin HCl


title: AML7


title: DMSO1B

description:
HL-60 cells purchased from ATCC and treated with 0.1% DMSO for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = Leukemia
Keywords = AML
Keywords = HL-60

source_name: HL-60 cell controls treated with 0.1% DMSO


title: Undiff2B

description:
HL-60 cells purchased from ATCC and cultured for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = Leukemia
Keywords = AML
Keywords = HL-60

source_name: HL-60 cells untreated controls


title: Undiff1B

source_name: HL-60 cells undifferentiated controls


title: G1E_30_A

source_name: G1E, ER4 clone, 30 hours post-estradiol


title: cyc1


title: Apo2

description:
HL-60 cells purchased from ATCC and treated with 5 uM R-(-)-apomorphine HCl for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = Leukemia
Keywords = AML
Keywords = HL-60

source_name: HL-60 cells treated with R-(-)-apomorphine HCl


title: DMSO3B

source_name: HL-60 cell controls treated with DMSO


title: DMSO2B

source_name: HL-60 cell controls  treated with DMSO


title: Apo1


title: Apo3


title: PMA2

description:
HL-60 cells purchased from ATCC and treated with 10 nM phorbol 12-myristate 13-acetate (PMA) for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = Leukemia
Keywords = AML
Keywords = HL-60

source_name: HL-60 cells treated with phorbol 12-myristate 13-acetate


title: AML8


title: PMA1


title: PMA3


title: Human T lymphocyte and myeloid microarray experiments10

description: Human RNA

source_name: Jurkat Vb8+CD28+PMA 4hr


title: VitD2

description:
HL-60 cells purchased from ATCC and treated with 0.1 uM 1,25-dihydroxyvitamin D3 for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = Leukemia
Keywords = AML
Keywords = HL-60

source_name: HL-60 cells treated with 1,25-dihydroxyvitamin D3


title: cyc3


title: VitD3


title: Undiff3B

source_name: HL-60 cell undifferentiated controls


title: VitD1


title: 5FU3

description:
HL-60 cells purchased from ATCC and treated with 1 uM 5-fluorouracil for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = Leukemia
Keywords = AML
Keywords = HL-60

source_name: HL-60 cells treated with 5-fluorouracil


title: 5FU2


title: Caff2

description:
HL-60 cells purchased from ATCC and treated with 75 uM 8-(3-chlorostyryl) caffeine for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = Leukemia
Keywords = AML
Keywords = HL-60

source_name: HL-60 cells treated with 8-(3-chlorostyryl) caffeine


title: Caff3


title: 5FU1


title: Scop3

description:
HL-60 cells purchased from ATCC and treated with 75 uM scopolamine methyl bromide for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = Leukemia
Keywords = AML
Keywords = HL-60

source_name: HL-60 cells treated with scopolamine methyl bromide


title: Caff1


title: Perg3

description:
HL-60 cells purchased from ATCC and treated with 50 uM pergolide methanesulfonate for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = Leukemia
Keywords = AML
Keywords = HL-60

source_name: HL-60 cells treated with pergolide methanesulfonate


title: Scop2


title: 5FUD1

description:
HL-60 cells purchased from ATCC and treated with 0.1 uM 5-fluorouridine for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = Leukemia
Keywords = AML
Keywords = HL-60

source_name: HL-60 cells treated with 5-fluorouridine


title: EGFR1

description:
HL-60 cells purchased from ATCC and treated with 30 uM 4,5-dianilinophthalimide for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = Leukemia
Keywords = AML
Keywords = HL-60

source_name: HL-60 cells treated with 4,5-dianilinophthalimide


title: 5FUD2


title: EGFR2


title: Scop1


title: Perg2


title: Phen2

description:
HL-60 cells purchased from ATCC and treated with 0.8uM 1,10-phenanthroline for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = Leukemia
Keywords = AML
Keywords = HL-60

source_name: HL-60 cells treated with 1,10-phenanthroline


title: Phen3


title: Keto3

description:
HL-60 cells purchased from ATCC and treated with 70 uM 16-ketoestradiol for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = Leukemia
Keywords = AML
Keywords = HL-60

source_name: HL-60 cells treated with 16-ketoestradiol


title: Phen1


title: 5FUD3


title: sulma1

description:
HL-60 cells purchased from ATCC and treated with 70 uM sulmazole for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = Leukemia
Keywords = AML
Keywords = HL-60

source_name: HL-60 cells treated with sulmazole


title: Perg1


title: sulma2


title: Keto2


title: Keto1


title: methyl3

description:
HL-60 cells purchased from ATCC and treated with 100 uM a-methyl-L-p-tyrosine for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = Leukemia
Keywords = AML
Keywords = HL-60

source_name: HL-60 cells treated with a-methyl-L-p-tyrosine


title: methyl2


title: sulma3


title: Erythro2

description:
HL-60 cells purchased from ATCC and treated with 70 uM Erythro-9-(2-hydroxy-3-nonyl)adenine HCl for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = Leukemia
Keywords = AML
Keywords = HL-60

source_name: HL-60 cells treated with Erythro-9-(2-hydroxy-3-nonyl)adenine HCl


title: methyl1


title: EGFR3


title: Erythro3


title: Erythro1


title: ATRA3

description:
HL-60 cells purchased from ATCC and treated with 1 uM ATRA for 5 days.  RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = HL-60
Keywords = leukemia
Keywords = AML

source_name: HL-60 cells treated with ATRA


title: PMA_24hr_1

description:
HL-60 cells purchased from ATCC and treated with 10 nM phorbol 12-myristate 13-acetate (PMA) for 24 hours. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = HL-60
Keywords = leukemia
Keywords = AML


title: ATRA2


title: PMA_4hr_1

description:
HL-60 cells purchased from ATCC and treated with 10 nM phorbol 12-myristate 13-acetate (PMA) for 4 hours. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = HL-60
Keywords = leukemia
Keywords = AML


title: PMA_12hr_1

description:
HL-60 cells purchased from ATCC and treated with 10 nM phorbol 12-myristate 13-acetate (PMA) for 12 hours. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = HL-60
Keywords = leukemia
Keywords = AML


title: PMA_24hr_0


title: PMA_12hr_0


title: ATRA_5d_1

description:
HL-60 cells purchased from ATCC and treated with 1 uM ATRA for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = HL-60
Keywords = leukemia
Keywords = AML


title: PMA_4hr_0


title: PMA_ctl_0hr_0

description:
Untreated HL-60 cells purchased from ATCC at time = 0. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = HL-60
Keywords = leukemia
Keywords = AML

source_name: HL-60 cells undifferentiated controls


title: DMSO3

description:
HL-60 cells purchased from ATCC and treated with 0.1% DMSO for 5 days.  RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = HL-60
Keywords = leukemia
Keywords = AML

source_name: HL-60 cells treated with DMSO


title: ATRA_5d_0

description:
HL-60 cells purchased from ATCC and treated with 1 uM ATRA for 3 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = HL-60
Keywords = leukemia
Keywords = AML


title: PMA_ctl_0hr_2


title: ATRA1


title: PMA_ctl_0hr_1


title: PMA_24hr_2

source_name: HL-60 cells treated with phorbol 12-myristate 13-acetate


title: undiff1

description:
HL-60 cell undifferentiated controls purchased from ATCC. Target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = HL-60
Keywords = leukemia
Keywords = AML

source_name: HL-60 cells undifferentiated


title: DMSO2


title: AML5

description:
Adult AML sample obtained from the Cancer and Leukemia Group (CALGB) leukemia bank, collected and processed as previously reported in Golub et al., Science, 286 (1999), p531-537.  Samples were selected without regard to immunophenotype, cytogenetics, or other molecular features. Hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = AML Leukemia

source_name: primary patient AML cells


title: poly3

description:
Normal peripheral blood neutrophils isolated using Ficoll-Paque separation from a donor leukopack discard sample provided by the Dana Farber Cancer Institute Blood Bank. RNA extraction, target preparation, and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = neutrophil

source_name: normal human neutrophils


title: DMSO1

source_name: HL-60 cells treated with 0.1% DMSO


title: AML6


title: PMA_ctl_24hr_0

description:
Untreated HL-60 cells purchased from ATCC at time = 24 hours. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = HL-60
Keywords = leukemia
Keywords = AML


title: ATRA_3d_1


title: mono3

description:
Normal peripheral blood monocytes isolated using Ficoll-Paque separation from a donor leukopack discard sample provided by the Dana Farber Cancer Institute Blood Bank. RNA extraction, target preparation, and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = monocyte

source_name: normal human monocytes


title: PMA_ctl_24hr_1


title: undiff2

source_name: HL-60 undifferentiated cells


title: AML4


title: undiff3


title: AML3


title: ATRA_24hr_1

description:
HL-60 cells purchased from ATCC and treated with 1 uM ATRA for 24 hours. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = HL-60
Keywords = leukemia
Keywords = AML


title: AML2


title: AML1


title: ATRA_3d_0


title: ATRA_ctl_0hr_1

description:
Untreated HL-60 cells purchased from ATCC and cultured for 0 hours. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = HL-60
Keywords = leukemia
Keywords = AML


title: ATRA_ctl_5d_0

description:
Untreated HL-60 cells purchased from ATCC and cultured for 5 days. RNA extraction, target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = HL-60
Keywords = leukemia
Keywords = AML


title: ATRA_ctl_0hr_0


title: MONO2_HUFL


title: POLY3_HUFL


title: APL_EGFR2

description:
Sample from a leukopharesis of a patient with acute promyelocytic leukemia (APL) with a t(15;17) and a white blood cell count of 185,000 with 97% myeloblasts at diagnosis treated with 25 uM 4,5-dianilinophthalimide for 5 days.  Target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = APL Leukemia

source_name: primary APL cells treated with  4,5-dianilinophthalimide


title: APL_Erythro2

description:
Sample from a leukopharesis of a patient with acute promyelocytic leukemia (APL) with a t(15;17) and a white blood cell count of 185,000 with 97% myeloblasts at diagnosis treated with 70 uM erythro-9-(2-hydroxy-3-nonyl) adenine HCl for 5 days.  Target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = APL Leukemia

source_name: primary APL cells treated with erythro-9-(2-hydroxy-3-nonyl) adenine HCl


title: APL_EGFR1

description:
Sample from a leukopharesis of a patient with acute promyelocytic leukemia (APL) with a t(15;17) and a white blood cell count of 185,000 with 97% myeloblasts at diagnosis treated with 25 uM  4,5-dianilinophthalimide for 5 days.  Target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = APL Leukemia

source_name: prikmary APL cells treated with 4,5-dianilinophthalimide


title: AML3_HUFL

description:
Adult AML sample obtained from the Cancer and Leukemia Group (CALGB) leukemia bank, collected and processed as previously reported in Golub et al., Science, 286 (1999), p531-537. Samples were selected without regard to immunophenotype, cytogenetics, or other molecular features. Hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = AML
Keywords = Leukemia


title: MONO1_HUFL


title: POLY2_HUFL


title: MONO3_HUFL


title: POLY1_HUFL


title: AML1_HUFL


title: APL_Phen2

description:
Sample from a leukopharesis of a patient with acute promyelocytic leukemia (APL) with a t(15;17) and a white blood cell count of 185,000 with 97% myeloblasts at diagnosis treated with 1 uM 1,10-phenanthroline for 5 days.  Target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = APL Leukemia

source_name: primary APL cells treated with 1,10-phenanthroline


title: AML2_HUFL


title: APL_Keto1

description:
Sample from a leukopharesis of a patient with acute promyelocytic leukemia (APL) with a t(15;17) and a white blood cell count of 185,000 with 97% myeloblasts at diagnosis treated with 70uM 16-ketoestradiol for 5 days.  Target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = APL Leukemia

source_name: primary APL cells treated with 16-ketoestradiol


title: ATRA_24hr_0


title: APL_RA1

description:
Sample from a leukopharesis of a patient with acute promyelocytic leukemia (APL) with a t(15;17) and a white blood cell count of 185,000 with 97% myeloblasts at diagnosis treated with 1uM ATRA for 5 days.  Target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = APL Leukemia

source_name: primary APL cells treated with ATRA


title: APL_Erythro1


title: APL_Keto2


title: APL_Phen1


title: APL2

description:
Sample from a leukopharesis of a patient with acute promyelocytic leukemia (APL) with a t(15;17) and a white blood cell count of 185,000 with 97% myeloblasts at diagnosis.  Target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = APL Leukemia

source_name: primary APL cells


title: APL_RA2


title: APL1

description: Sample from a leukopharesis of a patient with acute promyelocytic leukemia (APL) with a t(15;17) and a white blood cell count of 185,000 with 97% myeloblasts at diagnosis.  Target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.


title: S11:1HG1HG

status: Public on Jan 27 2004

city: Newark

first: Xuelin

last: Cui

state: NJ

address: 185 S. Orange Ave.

department: Pharmacology and Physiology

institute: New Jersey Medical School-UMDNJ

description: The mRNA samples used in this experiment were extracted from 20-old rat small intestines perfused with HG and HF for 4 h.

organism: Rattus norvegicus


title: S12:3HG3HG


title: S14:capture primer

description: The primers were provided in the   Genesphere 3DNA labeling kit.

source_name: Cy5 primer

source_name: Cy3 primer


title: S10:(4)HG(4)HF

description: The mRNA samples used in this experiment were extracted from 20-old rat small intestines perfused with HG and HF for 20 min.


title: S9:(3)HG(3)HF


title: S5:5HG5HF

description: The mRNA samples used in this experiment were extracted from 20-d old rat small intestines perfused with HG and HF for 4 h.


title: S13:3HF3HF


title: S8:(2)HG(2)HF


title: S6:2HG52HF3


title: HF12E1

status: Public on Jan 26 2004

city: Kansas City

first: Robert

middle: C

last: De Lisle

state: KS

address: 3901 Rainbow Blvd

department: Anatomy & Cell Biology

institute: Univ Kansas Med Ctr

description: Total RNA was prepared from the entire small intestine of one 40 day old CFTR null female mouse, CFTR(-/-), congenic on the black6 background, using TRIzol reagent. Mice were fed Peptamen from age 10 days to prevent intestinal obstruction.

source_name: Small intestine


title: ZF6B7

description: Total RNA was prepared from the entire small intestine of one 40 day old CFTR control male mouse, CFTR(+/+), congenic on the black6 background, using TRIzol reagent. Mice were fed Peptamen from age 10 days to prevent intestinal obstruction.


title: HC12E4

description: Total RNA was prepared from the entire small intestine of one 40 day old CFTR null male mouse, CFTR(-/-), congenic on the black6 background, using TRIzol reagent. Mice were fed Peptamen from age 10 days to prevent intestinal obstruction.


title: S4:4HG4HF


title: S2:2HG2HF


title: HK12B5


title: S7:(1)HG(1)HF


title: HK12B7


title: C2C12A_Day6c

status: Public on Jan 23 2004

first: Kinga

middle: Katarzyna

last: Tomczak

address: 300 Longwood Avenue

department: Genomics Program and Division of Genetics

institute: Children's Hospital Boston

description:
C2C12 cells after 6 days in differentiating medium (Day 6): Replicate 3
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day10a

description:
C2C12 cells after 10 days in differentiating medium (Day 10): Replicate 1
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day4c

description:
C2C12 cells after 4 days in differentiating medium (Day 4): Replicate 3
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day8b

description:
C2C12 cells after 8 days in differentiating medium (Day 8): Replicate 2
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day6b

description:
C2C12 cells after 6 days in differentiating medium (Day 6): Replicate 2
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day8a

description:
C2C12 cells after 8 days in differentiating medium (Day 8): Replicate 1
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: S1:1HG1HF


title: C2C12A_Day10b

description:
C2C12 cells after 10 days in differentiating medium (Day 10): Replicate 2
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day8c

description:
C2C12 cells after 8 days in differentiating medium (Day 8): Replicate 3
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day10c

description:
C2C12 cells after 10 days in differentiating medium (Day 10): Replicate 3
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day6a

description:
C2C12 cells after 6 days in differentiating medium (Day 6): Replicate 1
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day2a

description:
C2C12 cells after 2 days in differentiating medium (Day 2): Replicate 1

Keywords = C2C12 myoblasts
Keywords = myogenesis


title: S3:3HG3HF


title: C2C12A_Day4b

description:
C2C12 cells after 4 days in differentiating medium (Day 4): Replicate 2
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day0c

description:
Confluent C2C12 cells at time of addition of differentiating medium (Day 0): Replicate 3
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day0a

description:
Confluent C2C12 cells at time of addition of differentiating medium (Day 0): Replicate 1

Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day-1c

description:
Proliferating C2C12 cells 1 day prior to addition of differentiating medium (Day -1): Replicate 3
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day0b

description:
Confluent C2C12 cells at time of addition of differentiating medium (Day 0): Replicate 2
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day2c

description:
C2C12 cells after 2 days in differentiating medium (Day 2): Replicate 3
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day4a

description:
C2C12 cells after 4 days in differentiating medium (Day 4): Replicate 1
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day-1a

description:
Proliferating C2C12 cells 1 day prior to addition of differentiating medium (Day -1): Replicate 1
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day2b

description:
C2C12 cells after 2 days in differentiating medium (Day 2): Replicate 2
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day-1b

description:
Proliferating C2C12 cells 1 day prior to addition of differentiating medium (Day -1): Replicate 2
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12A_Day-2b

description:
Proliferating C2C12 cells 2 days prior to addition of differentiating medium (Day -2): Replicate 2
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: tTA +Doxy 7488

city: Claremont

first: Alexander

last: Zambon

state: CA

address: 517 Watson Drive

department: Biopharmaceutical Sciences

institute: Keck Graduate Institute

description: Examining the effects of tTA expression in mouse hearts

source_name: mouse cardiac ventricle


title: C2C12A_Day-2c

description:
Proliferating C2C12 cells 2 days prior to addition of differentiating medium (Day -2): Replicate 3
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: tTA +Doxy 7485


title: tTA +Doxy 7486

source_name: mouse ventricle tissue


title: tTA 7292

source_name: mouse cardiac ventricular tissue


title: tTA +Doxy 7424


title: tTA 9310


title: C2C12A_Day-2a

description:
Proliferating C2C12 cells 2 days prior to addition of differentiating medium (Day -2): Replicate 1

Keywords = C2C12 myoblasts
Keywords = myogenesis


title: tTA +Doxy 7399


title: Fvbn +Doxy 8341

source_name: Mouse cardiac ventricular tissue


title: tTA 9322


title: tTA 7308


title: tTA 7311


title: tTA 7310


title: 8182 Fvbn control

description:
This study was conducted using affymetrix microarrays. We were interested in determining the effects of tTA expression in the hearts of FVBN mice. We compared expression to wild type mice
Keywords = tTA FVBN alpha MHC promoter

source_name: Mouse Cardiac ventricular Tissue


title: 8177 Fvbn control

source_name: cardiac ventricular tissue


title: tTA 7294


title: C2C12C_Day10c

description:
C2C12 cells after 10 days in differentiating medium (Day 10): Replicate 3
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: tTA 7288


title: C2C12C_Day10b

description:
C2C12 cells after 10 days in differentiating medium (Day 10): Replicate 2
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12C_Day6c

description:
C2C12 cells after 6 days in differentiating medium (Day 6): Replicate 3
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: FVBN +Doxy 8338

source_name: mouse ventricular tissue


title: FVBN +Doxy 8337


title: Cardiac tTA expression


title: C2C12C_Day0c

description:
Confluent C2C12 cells at time of addition of differentiating medium (Day 0): Replicate 3
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12C_Day6a

description:
C2C12 cells after 6 days in differentiating medium (Day 6): Replicate 1
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12C_Day6b

description:
C2C12 cells after 6 days in differentiating medium (Day 6): Replicate 2
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12C_Day10a

description:
C2C12 cells after 10 days in differentiating medium (Day 10): Replicate 1
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: FVBN +Doxy 8340


title: C2C12C_Day4b

description:
C2C12 cells after 4 days in differentiating medium (Day 4): Replicate 2
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12C_Day2c

description:
C2C12 cells after 2 days in differentiating medium (Day 2): Replicate 3
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12C_Day0b

description:
Confluent C2C12 cells at time of addition of differentiating medium (Day 0): Replicate 2
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12C_Day2b

description:
C2C12 cells after 2 days in differentiating medium (Day 2): Replicate 2
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12C_Day-1c

description:
Proliferating C2C12 cells 1 day prior to addition of differentiating medium (Day -1): Replicate 3
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12C_Day4c

description:
C2C12 cells after 4 days in differentiating medium (Day 4): Replicate 3
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12C_Day-1a

description:
Proliferating C2C12 cells 1 day prior to addition of differentiating medium (Day -1): Replicate 1
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12C_Day-1b

description:
Proliferating C2C12 cells 1 day prior to addition of differentiating medium (Day -1): Replicate 2
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12C_Day4a

description:
C2C12 cells after 4 days in differentiating medium (Day 4): Replicate 1
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12C_Day2a

description:
C2C12 cells after 2 days in differentiating medium (Day 2): Replicate 1
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12C_Day0a

description:
Confluent C2C12 cells at time of addition of differentiating medium (Day 0): Replicate 1
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12C_Day-2b

description:
Proliferating C2C12 cells 2 days prior to addition of differentiating medium (Day -2): Replicate 2
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12C_Day-2c

description:
Proliferating C2C12 cells 2 days prior to addition of differentiating medium (Day -2): Replicate 3
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: C2C12C_Day-2a

description:
Proliferating C2C12 cells 2 days prior to addition of differentiating medium (Day -2): Replicate 1
Keywords = C2C12 myoblasts
Keywords = myogenesis


title: db/db 12-3

status: Public on Jan 20 2004

city: Bronx

first: Weijia

last: Zhang

state: NY

address: 1300 Morris Park Ave

department: Medicine

institute: Albert Einstein College of Medicine

description:
Total RNA from whole kidney was hybridized
Keywords = diabetes mouse models diabetic nephropathy streptozotocin db/db

source_name: ID:12-3, Genotype=(C57BKsJ) Lepr db/db, Treatment= none

source_name: common reference RNA (from mouse liver,spleen and kidney)


title: db/m 3-1

source_name: ID:3-1, Genotype=(C57BKsJ) Lepr db/m, Treatment= none


title: db/db 10-4

source_name: ID:10-4, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/db 10-1

source_name: ID:10-1, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/db 8-3

source_name: ID:8-3, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/db 9-3

source_name: ID:9-3, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/m 2-3

source_name: ID:2-3, Genotype=(C57BKsJ) Lepr db/m, Treatment= none


title: db/db 8-5

source_name: ID:8-5, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/db 7-4

source_name: ID:7-4, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/db 7-5

source_name: ID:7-5, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/db 11-1

source_name: ID:11-1, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/db 11-3

source_name: ID:11-3, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/m 3-3

source_name: ID:3-3, Genotype=(C57BKsJ) Lepr db/m, Treatment= none


title: db/db 11-5

source_name: ID:11-5, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: c 2-3

source_name: ID:c 2-3, Genotype=(C57BL/6J), Treatment= none


title: db/db 9-1

source_name: ID:9-1, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/db 9-4

source_name: ID:9-4, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/db 10-5

source_name: ID:10-5, Genotype=(C57BKsJ) Lepr db/db, Treatment= none

source_name: common reference RNA (from mouse liver,spleen and kidney)


title: db/db 7-3

source_name: ID:7-3, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/db 12-2

source_name: ID:12-2 Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/db 8-4

source_name: ID:8-4, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/m 1-2

source_name: ID:1-2, Genotype=(C57BKsJ) Lepr db/m, Treatment= none


title: db/m 1-1

source_name: ID:1-1, Genotype=(C57BKsJ) Lepr db/m, Treatment= none


title: db/db 11-4

source_name: ID:11-4, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/db 12-1

source_name: ID:12-1, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: c 2-2

source_name: ID:c 2-2, Genotype=(C57BL/6J), Treatment= none


title: db/db 9-2

source_name: ID:9-2, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/db 11-2

source_name: ID:11-2, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/m 2-2

source_name: ID:2-2, Genotype=(C57BKsJ) Lepr db/m, Treatment= none


title: c 2-1

source_name: ID:c 2-1, Genotype=(C57BL/6J), Treatment= none


title: db/m 6-2

source_name: ID:6-2, Genotype=(C57BKsJ) Lepr db/m, Treatment= none


title: c 4-3

source_name: ID:c 4-3, Genotype=(C57BL/6J), Treatment= none


title: c 1-1

source_name: ID:c 1-1, Genotype=(C57BL/6J), Treatment= none


title: db/m 6-3

source_name: ID:6-3, Genotype=(C57BKsJ) Lepr db/m, Treatment= none


title: c 1-2

source_name: ID:c 1-2, Genotype=(C57BL/6J), Treatment= none

source_name: common reference RNA (from mouse liver,spleen and kidney)


title: db/db 13-5

source_name: ID:13-5, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/db 13-2

source_name: ID:13-2, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/db 13-1

source_name: ID:13-1, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: c 4-5

source_name: ID:c 4-5, Genotype=(C57BL/6J), Treatment= none


title: c 4-1

source_name: ID:c 4-1, Genotype=(C57BL/6J), Treatment= none


title: c 4-4

source_name: ID:c 4-4, Genotype=(C57BL/6J), Treatment= none


title: db/m 6-4

source_name: ID:6-4, Genotype=(C57BKsJ) Lepr db/m, Treatment= none


title: db/m 5-4

source_name: ID:5-4, Genotype=(C57BKsJ) Lepr db/m, Treatment= none


title: Adult 28hr

status: Public on Jan 18 2004

city: San Francisco

first: Coleen

middle: T

last: Murphy

department: Biochemistry Department

institute: University of California, San Francisco

description:
We wished to study normal adult aging in C. elegans.  We competitively hybridized a series of experimental samples (experimental variable: adult age) against a common reference sample.

We use the CF512 fer-15(b26) II; fem-1 (hc17) IV mutant strain, which has defective spermatids which fail to activate into spermatozoa at 25C.  Culturing this strain at 25C prevented self-fertilization and therefore eliminated contributions from embryonic transcripts.  CF512 animals develop an otherwise-normal germ line; their lifespan and aging are similar to wild-type animals.

We axenized eggs and then synchronized animals via L1 arrest. Populations were very tightly synchronized.  Animals were cultured at 25C.  Samples were extracted and hybridized as described in protocols at http://microarrays.org.
Keywords = aging

organism: Caenorhabditis elegans

source_name: CF512 animals, 28hr adult age

source_name: Reference sample A2


title: Adult 16hr

source_name: CF512 animals, adult age 16hr


title: Adult 52hr

source_name: CF512 animals, 52hr adult age


title: c 4-2

source_name: ID:c 4-2, Genotype=(C57BL/6J), Treatment= none


title: db/db 14-3

source_name: ID:14-3, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: Adult 144hr

source_name: CF512 animals, 144 hr adult age


title: db/db 14-4

source_name: ID:14-4, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/db 14-1

source_name: ID:14-1, Genotype=(C57BKsJ) Lepr db/db, Treatment= none

source_name: common reference RNA (from mouse liver,spleen and kidney)


title: db/db 13-4

source_name: ID:13-4, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: db/db 14-5

source_name: ID:14-5, Genotype=(C57BKsJ) Lepr db/db, Treatment= none


title: Adult 8hr

source_name: CF512 animals, adult age 8hr


title: Adult 96 hr

source_name: CF512 animals, 96 hr adult age


title: Hypoxia 6 hours (donor F) (filter 1034)

status: Public on Jan 17 2004

first: Cristin

last: Print

country: United Kingdom

institute: Cambridge University

description: Human peripheral blood neutrophils from donor F cultured in hypoxic conditions for 6 hours

source_name: HUMAN PMN


title: Normoxia 6 hours (donor F) (filter 1033)

description: Human peripheral blood neutrophils from donor F cultured in normoxic conditions for 6 hours


title: Anoxia 6 hours (donor E) (filter 859)

description: Human peripheral blood neutrophils from donor E cultured in anoxic conditions for 6 hours


title: Heat shock 4 hr

description: We sought to study the effect of heat stress on gene expression in C. elegans.  We cultured CF512 animals to adulthood at 25C (at which they are sterile).  We then induced heat stress by switching the culture temperature to 30C.

source_name: CF512 adults, 4 hr heat shock

source_name: Reference sample HS1


title: Anoxia 6 hours (donor F) (filter 1035)

description: Human peripheral blood neutrophils from donor F cultured in anoxic conditions for 6 hours


title: Hypoxia 6 hours (donor E) (filter 858)

description: Human peripheral blood neutrophils from donor E cultured in hypoxic conditions for 6 hours


title: Heat shock 0 hr (baseline)

source_name: CF512 adult animals, baseline time point


title: Heat shock 6 hr

source_name: CF512 adults, 6 hr heat shock


title: Heat shock 2 hr

source_name: CF512 adults, 2 hr heat shock


title: Heat shock 12 hr

source_name: CF512 adults, 12 hr heat shock


title: db/m 5-3

source_name: ID:5-3, Genotype=(C57BKsJ) Lepr db/m, Treatment= none


title: Heat shock 10 hr

source_name: CF512 adults, 10 hr heat shock


title: Heat shock 8 hr

source_name: CF512 adults, 8 hr heat shock


title: Anoxia 6 hours (donor D) (filter 850)

description: Human peripheral blood neutrophils from donor D cultured in anoxic conditions for 6 hours


title: Normoxia 6 hours (donor E) (filter 857)

description: Human peripheral blood neutrophils from donor E cultured in normoxic conditions for 6 hours


title: Anoxia 3 hours (donor C) (filter 1032)

description: Human peripheral blood neutrophils from donor C cultured in anoxic conditions for 3 hours


title: Hypoxia 6 hours (donor D) (filter 848)

description: Human peripheral blood neutrophils from donor D cultured in hypoxic conditions for 6 hours


title: Normoxia 6 hours (donor D) (filter 847)

description: Human peripheral blood neutrophils from donor D cultured in normoxic conditions for 6 hours


title: Anoxia 3 hours (donor B) (filter 856)

description: Human peripheral blood neutrophils from donor B cultured in Anoxic conditions for 3 hours


title: Anoxia 3 hours (donor A) (filter 853)

description: Human peripheral blood neutrophils from donor A cultured in anoxic conditions for 3 hours


title: Hypoxia 3 hours (donor B) (filter 855)

description: Human peripheral blood neutrophils from donor B cultured in hypoxic conditions for 3 hours


title: Normoxia 3 hours (donor B) (filter 854)

description: Human peripheral blood neutrophils from donor B cultured in normoxic conditions for 3 hours


title: Normoxia 3 hours (donor C) (filter 1030)

description: Human peripheral blood neutrophils from donor C cultured in normoxic conditions for 3 hours


title: Normoxia 3 hours (donor A) (filter 851)

description: Human peripheral blood neutrophils from donor A cultured in normoxic conditions for 3 hours


title: Hypoxia 3 hours (donor C) (filter 1031)

description: Human peripheral blood neutrophils from donor C cultured in hypoxic conditions for 3 hours


title: Adult 0hr

description:
We wished to study normal adult aging in C. elegans.  We competitively hybridized a series of experimental samples (experimental variable: adult age) against a common reference sample.

We use the CF512 fer-15(b26) II; fem-1 (hc17) IV mutant strain, which has defective spermatids which fail to activate into spermatozoa at 25C.  Culturing this strain at 25C prevented self-fertilization and therefore eliminated contributions from embryonic transcripts.  CF512 animals develop an otherwise-normal germ line; their lifespan and aging are similar to wild-type animals.

We axenized eggs and then synchronized animals via L1 arrest. Populations were very tightly synchronized.  Animals were cultured at 25C.  Samples were extracted and hybridized as described in protocols at http://microarrays.org.
Keywords = aging

source_name: CF512 animals, adult age 0hr

source_name: Mixed reference A2


title: Hypoxia 3 hours (donor A) (filter 852)

description: Human peripheral blood neutrophils from donor A cultured in hyoxic conditions for 3 hours


title: Nadluardjuk Lake Arctic tundra soil (FOX-B), replicate 1

status: Public on Jan 12 2004

type: SARST

city: Vancouver

first: Josh

middle: D

last: Neufeld

state: BC

address: #300-6174 University Blvd.

department: Department of Microbiology & Immunology

country: Canada

institute: University of British Columbia

description:
Ribosomal sequence tag (RST) data from a composite soil sample from Nadluardjuk Lake, replicate 1.

Sample : Nadluardjuk Lake (FOX-B1)
Date sampled : 020815
Observations : Dark, dry, and soft (humics)
Composite # : 10
Depth : 10 cm
Latitude : 73 12' N
Longitude : 68 37' W
GPS : NAD83, Zone 19, U E512366, N 8122830
Location : Hall Beach, Baffin Island, Canada
Moisture (% of dry weight) : 2.5
Forest type : Alpine tundra
Soil type : Sandy Loam
Wet (g) : 183.4
Dry (g) : 178.9
pH : 5.3
C/N ratio : 16.0
Nitrate-N (ppm) : 0.2
Ammonium-N (ppm) : 4.7
Mineralizable-N (ppm) : 3.8
DNA (ug/g fresh soil) : 8.5
Organic Matter (%) : 1.38
Total Nitrogen (%) : 0.05
Phosphate (P; ppm) : 9
Potassium (K; ppm) : 23
Calcium (Ca; ppm) : 50
Magnesium (Mg; ppm) : 10
Sulfate-S (ppm) : 2.8
Textural class : Sandy loam
Sand (VCS; #10-2.00mm) : 69.9
Silt (#270-0.053 mm) : 28.8
Clay (2 microns) : 1.3

Lot batch =

organism: Bacteria

source_name: soil sample Arctic site Nadluardjuk Lake (FOX-B)


title: Nadluardjuk Lake Arctic tundra soil (FOX-B), replicate 2

description:
Ribosomal sequence tag (RST) data from a composite soil sample from Nadluardjuk Lake, replicate 2.

Sample : Nadluardjuk Lake (FOX-B2)
Date sampled : 020815
Observations : Dark, dry, and soft (humics)
Composite # : 10
Depth : 10 cm
Latitude : 73 12' N
Longitude : 68 37' W
GPS : NAD83, Zone 19, U E512366, N 8122830
Location : Hall Beach, Baffin Island, Canada
Moisture (% of dry weight) : 2.5
Forest type : Alpine tundra
Soil type : Sandy Loam
Wet (g) : 183.4
Dry (g) : 178.9
pH : 5.3
C/N ratio : 16.0
Nitrate-N (ppm) : 0.2
Ammonium-N (ppm) : 4.7
Mineralizable-N (ppm) : 3.8
DNA (ug/g fresh soil) : 8.5
Organic Matter (%) : 1.38
Total Nitrogen (%) : 0.05
Phosphate (P; ppm) : 9
Potassium (K; ppm) : 23
Calcium (Ca; ppm) : 50
Magnesium (Mg; ppm) : 10
Sulfate-S (ppm) : 2.8
Textural class : Sandy loam
Sand (VCS; #10-2.00mm) : 69.9
Silt (#270-0.053 mm) : 28.8
Clay (2 microns) : 1.3

Lot batch =


title: Series 2; Older; 6 weeks

status: Public on Jan 10 2004

city: Charlotte

first: Ralph

last: Meyer

state: NC

department: Orthopaedic Research Laboratory

institute: Carolinas Medical Center

description:
Study of rat femur fracture healing in older rats (52 weeks old at fracture) at 6 weeks after fracture.  RNA from two rats was pooled for each array.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur

source_name: SD rat femur


title: Series 2; Older; 4 weeks

description:
Study of rat femur fracture healing in older rats (52 weeks of age at fracture) at 4 weeks after fracture.  RNA from two rats was pooled for each array.
Keywords = rat, fracture, age, time, femur


title: Day 3 Mouse #33 - 3rd replicate

status: Public on Jan 15 2004

city: Pasadena

first: Sangdun

last: Choi

address: 1200 E. California Blvd

institute: California Institute of Technology

description:
Control total RNA was pooled from the kidney of five normal BALB/c mice.
Total RNA was extracted from the kidney of BALB/c mice injected with anti-GBM antibody for 3 day.

source_name: Total RNA from the kidney of control mice was labeled with Cyanine-3 (green).

source_name: Total RNA from the kidney of anti-GBM glomerulonephritis mice was labeled with Cyanine-5 (red).


title: Series 2; adult; 2 weeks

description:
Study of rat femur fracture healing in adult rats (26 weeks old at fracture) at 2 weeks after fracture.  RNA from two rats was pooled for each array.
Keywords = rat, fracture, age, time, femur


title: Series 2; adult; 3 days

description:
Study of rat femur fracture healing in adult rats (26 weeks old at fracture) at 3 days after fracture.  RNA for two rats were pooled for each array.
Keywords = rat, fracture, age, time, femur


title: Series 2; adult; 1 week

description:
Study of rat femur fracture healing in adult rats (26 weeks old at fracture) at 1 week after fracture.  RNA from two rats was pooled for each array.
Keywords = rat, fracture, age, time, femur


title: Series 2; adult; 6 weeks

description:
Study of rat femur fracture healing in adult rats (26 weeks old at fracture) at 6 weeks after fracture.  RNA from two rats was pooled for each array.
Keywords = rat, fracture, age, time, femur


title: Series 2; Older; 1 week

description:
Study of rat femur fracture healing in older rats (52 weeks of age at fracture) at 1 week after fracture.  RNA from two rats was pooled for each array.
Keywords = rat, fracture, femur, age, time


title: Day 11 Mouse #73 - 3rd replicate

description:
Control total RNA was pooled from the kidney of five normal BALB/c mice.
Total RNA was extracted from the kidney of BALB/c mice injected with anti-GBM antibody for 11 day.


title: Series 2; Older; 3 days

description:
Study of rat femur fracture healing in older rats (52 weeks old at fracture) at 3 days after fracture.  RNA from two rats was pooled for each array.
Keywords = rat, fracture, age, time, femur


title: Series 2; adult; 4 weeks

description:
Study of rat femur fracture healing in adult rats (26 weeks old at fracture) at 4 weeks after fracture.  RNA from two rats were pooled for each arrray.
Keywords = rat, fracture, age, time, femur


title: Series 2; adult; no fracture

description:
Study of rat femur fracture healing in adult rats (26 weeks old at fracture) for intact bone collected on the day of fracture.  RNA for two rats was pooled for each array.
Keywords = rat, fracture, age, time, femur


title: Day 16 Mouse #92 - 2nd replicate

description:
Control total RNA was pooled from the kidney of five normal BALB/c mice.
Total RNA was extracted from the kidney of BALB/c mice injected with anti-GBM antibody for 16 day.


title: Series 2; Older; 2 weeks

description:
Study of rat femur fracture healing in older rats (52 weeks of age at fracture) at 2 weeks after fracture.  RNA from two rats was pooled for each array.
Keywords = rat, fracture, age, time, femur


title: Day 11 Mouse #71 - 1st replicate


title: Day 16 Mouse #91 - 1st replicate


title: Day 3 Mouse #32 - 2nd replicate


title: Day 7 Mouse #54 - 3rd replicate

description:
Control total RNA was pooled from the kidney of five normal BALB/c mice.
Total RNA was extracted from the kidney of BALB/c mice injected with anti-GBM antibody for 7 day.


title: Day 1 Mouse #13 - 3rd replicate

description:
Control total RNA was pooled from the kidney of five normal BALB/c mice.
Total RNA was extracted from the kidney of BALB/c mice injected with anti-GBM antibody for 1 day.


title: Series 2; Older; no fracture

description:
Study of rat femur fracture healing in older rats (52 weeks old at fracture) with the sample collected at the time of fracture.  RNA from two rats was pooled for each array
Keywords = rat, fracture, age, time, femur


title: Day 16 Mouse #94 - 3rd replicate


title: Day 1 Mouse #12 - 2nd replicate


title: Day 1 Mouse #11 - 1st replicate

description:
Control total RNA was pooled from kidneys of five normal BALB/c mice.
Total RNA was extracted from kidneys of BALB/c mice injected with anti-GBM antibody for 1 day.

source_name: Total RNA from kidneys of control mice was labeled with Cyanine-3 (green).

source_name: Total RNA from kidneys of anti-GBM glomerulonephritis mice was labeled with Cyanine-5 (red).


title: Day 7 Mouse #53 - 2nd replicate


title: Day 11 Mouse #72 - 2nd replicate


title: Day 7 Mouse #52 - 1st replicate


title: Day 3 Mouse #31 - 1st replicate

description:
Control total RNA was pooled from kidneys of five normal BALB/c mice.
Total RNA was extracted from kidneys of BALB/c mice injected with anti-GBM antibody for 3 day.


title: Series 2; young; 2 weeks

description:
Study of rat femur fracture healing in young rats (6 weeks old at fracture) at 2 weeks after fracture.  RNA from two rats were pooled for each array.
Keywords = rat, fracture, age, time, femur


title: Series 2; young; 6 weeks

description:
Study of rat femur fracture healing in young rats (6 weeks old at fracture) at 6 weeks after fracture.  RNA from two rats were pooled for each array.
Keywords = rat, fracture, age, time, femur


title: Series 2; young; 1 week

description:
Study of rat femur fracture healing in young rats (6 weeks old at fracture) at 1 week after fracture.  RNA from two rats were pooled for each array.
Keywords = rat, fracture, age, time, femur


title: Series 2; young; 4 weeks

description:
Study of rat femur fracture healing in young rats (6 weeks old at fracture) at 4 weeks after fracture.  RNA from two rats were pooled for each array.
Keywords = rat, fracture, age, time, femur


title: Series 2; young; no fracture

description:
Study of rat femur fracture healing in young rats (6 weeks old at fracture) for intact bone at the time of fracture.  RNA from two rats were pooled for each array.
Keywords = rat, fracture, age, time, femur


title: Series 2; young; 3 day

description:
Study of rat femur fracture healing in young rats (6 weeks old at fracture) at 3 days after fracture.  RNA from two rats were pooled for each array.
Keywords = rat, fracture, age, time, femur


title: 54h-AM replication 2

status: Public on Jan 09 2004

city: Baltimore

first: Minoru

last: Ko

state: MD

address: 251 Bayview Blvd, Suite 100, 10C

department: National Institute on Aging

institute: NIH

description:
54h-AM replication 2
Keywords = preimplantation
Keywords = development

source_name: 54h-AM, late 2-cell embryo

source_name: Universal Reference


title: 43h-DMSO replication 3

description:
43h-DMSO replication 3
Keywords = preimplantation
Keywords = development

source_name: 43h-DMSO, early 2-cell embryo


title: 43h-DMSO replication 2

description:
43h-DMSO replication 2
Keywords = preimplantation
Keywords = development


title: 43h-DMSO replication 1

description:
43h-DMSO replication 1
Keywords = preimplantation
Keywords = development


title: 43h-CHX replication 2

description:
43h-CHX replication 2
Keywords = preimplantation
Keywords = development

source_name: 43h-CHX, early 2-cell embryo


title: 32h-DMSO replication 2

description:
32h-DMSO replication 2
Keywords = preimplantation
Keywords = development

source_name: 32h-DMSO, late 1-cell embryo


title: 43h-CHX replication 4

description:
43h-CHX replication 4
Keywords = preimplantation
Keywords = development


title: 43h-AM replication 2

description:
43h-AM replication 2
Keywords = preimplantation
Keywords = development

source_name: 43h-AM, early 2-cell embryo


title: 54h-AM replication 1

description:
54h-AM replication 1
Keywords = preimplantation
Keywords = development


title: 32h-AC replication 3

description:
32h-AC replication 3
Keywords = preimplantation
Keywords = development

source_name: 32h-AC, late 1-cell embryo


title: 43h-AC replication 2

description:
43h-AC replication 2
Keywords = preimplantation
Keywords = development

source_name: 43h-AC, early 2-cell embryo


title: 32h-AM replication 3

description:
32h-AM replication 3
Keywords = preimplantation
Keywords = development

source_name: 32h-AM, late 1-cell embryo


title: 43h-AM replication 1

description:
43h-AM replication 1
Keywords = preimplantation
Keywords = development


title: 32h-DMSO replication 3

description:
32h-DMSO replication 3
Keywords = preimplantation
Keywords = development


title: 32h-AM replication 2

description:
32h-AM replication 2
Keywords = preimplantation
Keywords = development


title: 32h-AC replication 2

description:
32h-AC replication 2
Keywords = preimplantation
Keywords = development


title: 32h-AC replication 1

description:
32h-AC replication 1
Keywords = preimplantation
Keywords = development


title: 32h-AM replication 1

description:
32h-AM replication 1
Keywords = preimplantation
Keywords = development


title: 54h-Control replication 2

description:
54h-Control replication 2
Keywords = preimplantation
Keywords = development

source_name: 54h-Control, late 2-cell embryo


title: 43h-AC replication 1

description:
43h-AC replication 1
Keywords = preimplantation
Keywords = development


title: 54h-Control replication 1

description:
54h-Control replication 1
Keywords = preimplantation
Keywords = development


title: 43h-CHX replication 3

description:
43h-CHX replication 3
Keywords = preimplantation
Keywords = development


title: 43h-Control replication 2

description:
43h-Control replication 2
Keywords = preimplantation
Keywords = development

source_name: 43h-Control, early 2-cell embryo


title: S9 only 12 hr ( replicate 2a )

status: Public on Apr 06 2004

city: Oklahoma City

first: Stewart

middle: Alan

last: Shields

state: OK

address: 825 NE 13th St

department: Arthritis/Immunology

institute: Oklahoma Medical Research Foundation

description:
normal human bronchial epithelial (NHBE), S9 only 12 hr ( replicate 2a )
Keywords = cigarette smoke, microarray, S9 toxicity, bronchial cell

source_name: S9 only 12 hr ( replicate 2a )


title: 43h-AM replication 3

description:
43h-AM replication 3
Keywords = preimplantation
Keywords = development


title: 54h-AM replication 3

description:
54h-AM replication 3
Keywords = preimplantation
Keywords = development


title: 54h-Control replication 3

description:
54h-Control replication 3
Keywords = preimplantation
Keywords = development


title: 43h-Control replication 1

description:
43h-Control replication 1
Keywords = preimplantation
Keywords = development


title: 32h-DMSO replication 1

description:
32h-DMSO replication 1
Keywords = preimplantation
Keywords = development


title: 43h-Control replication 3

description:
43h-Control replication 3
Keywords = preimplantation
Keywords = development


title: 43h-AC replication 3

description:
43h-AC replication 3
Keywords = preimplantation
Keywords = development


title: 32h-Control replication 3

description:
32h-Control replication 3
Keywords = preimplantation
Keywords = development

source_name: 32h-Control, late 1-cell embryo


title: Series 1; older; 6 weeks

description:
Study of rat femur fracture healing in older rats (52 weeks of age at fracture) at 6 weeks after fracture.  RNA from two rats were pooled for each array.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur

source_name: SD rat femur


title: Series 1; older; 4 weeks

description:
Study of rat femur fracture healing in older rats (52 weeks of age at fracture) at 4 weeks after fracture.  RNA from two rats were pooled for each array.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: 32h-Control replication 1

description:
32h-Control replication 1
Keywords = preimplantation
Keywords = development


title: 32h-Control replication 2

description:
32h-Control replication 2
Keywords = preimplantation
Keywords = development


title: Series 1; older; 2 weeks

description:
Study of rat femur fracture healing in older rats (52 weeks old at fracture) at 2 weeks after fracture.  RNA from two rats were pooled for each sample.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: Series 1; older; 3 days

description:
Study of rat femur fracture healing in older rats (52 weeks old at fracture) at 3 days after fracture.  RNA from two rats were pooled for each array.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: Series 1; older; 1 week

description:
Study of rat femur fracture healing in older rats (52 weeks old at fracture) at 1 week after fracture.  RNA was pooled from 2 rats for each array.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: Series 1; adult; 6 weeks

description:
Study of rat femur fracture healing in adult rats (26 weeks old at fracture) at 6 weeks after fracture.  RNA from two rats were pooled for each array.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: Series 1; adult; 2 weeks

description:
Study of rat femur fracture healing in adult rats (26 weeks old at fracture) at 2 weeks after fracture.  RNA from two rats were pooled for each array.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: Series 1; adult; 4 weeks

description:
Study of rat femur fracture healing in adult rats (26 weeks old at fracture) at 4 weeks after fracture.  RNA from two rats were pooled for each array
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: Series 1; older; no fracture

description:
Study of rat femur fracture healing in older rats (52 weeks old at fracture) at the time of fracture.  RNA from two rats were pooled for each array.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: 8-cell embryo replication 2

description:
8-cell embryo replication 2
Keywords = preimplantation
Keywords = development

source_name: 8-cell embryo

source_name: Universal Control


title: 8-cell embryo replication 4

description:
8-cell embryo replication 4
Keywords = preimplantation
Keywords = development


title: Series 1; adult; 1 week

description:
Study of rat femur fracture healing in adult rats (26 weeks old at fracture) at 1 week after fracture.  RNA from two rats were pooled for each array
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: Morula replication 2

description:
Morula replication 2
Keywords = preimplantation
Keywords = development

source_name: Morula


title: Series 1; adult; 3 days

description:
Study of rat femur fracture healing in adult rats (26 weeks old at fracture) at 3 days after fracture.  RNA from two rats were pooled for each array.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: 21h-Control replication 4

description:
21h-Control replication 4
Keywords = preimplantation
Keywords = development

source_name: 21h-Control, early 1-cell embryo


title: Morula replication 3

description:
Morula replication 3
Keywords = preimplantation
Keywords = development


title: Blastocyst replication 4

description:
Blastocyst replication 4
Keywords = preimplantation
Keywords = development

source_name: Blastocyst


title: Morula replication 4

description:
Morula replication 4
Keywords = preimplantation
Keywords = development


title: 21h-Control replication 1

description:
21h-Control replication 1
Keywords = preimplantation
Keywords = development

source_name: Universal Reference


title: 4-cell embryo replication 3

description:
4-cell embryo replication 3
Keywords = preimplantation
Keywords = development

source_name: 4-cell embryo


title: 4-cell embryo replication 2

description:
4-cell embryo replication 2
Keywords = preimplantation
Keywords = development


title: Series 1; adult; no fracture

description:
Study of rat femur fracture healing in adult rats (26 weeks old at fracture) for intact femora.  RNA from 2 rats were pooled for each array.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: Morula replication 1

description:
Morula replication 1
Keywords = preimplantation
Keywords = development


title: 4-cell embryo replication 4

description:
4-cell embryo replication 4
Keywords = preimplantation
Keywords = development


title: Series 1; young; 6 weeks

description:
Study of rat femur fracture healing in young rats (6 weeks old at fracture) at 6 weeks after fracture.  RNA from two rats were pooled for each array.
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur


title: 8-cell embryo replication 1

description:
8-cell embryo replication 1
Keywords = preimplantation
Keywords = development


title: 8-cell embryo replication 3

description:
8-cell embryo replication 3
Keywords = preimplantation
Keywords = development


title: Series 1;young; 1 week

description:
Study of rat femur fracture healing in young rats (6 weeks old at fracture) at 1 wk after fracture.  RNA from 2 rats were pooled for each array
Keywords = rat
Keywords = fracture
Keywords = age
Keywords = time
Keywords = femur