title: DFCR7

description:
Female Ames dwarf mouse (df/df) with ad libitum access to water and fed 30% less of the standard pelleted diet with respect to the amount consumed by female ad libitum fed df/df mice (LabDiet, PMI Feeds, Inc., St Louis, MO) caged with microisolator filter tops.  Mice were killed between 24 to 26 months of age, tissues removed, rapidly frozen on dry ice, and stored in liquid nitrogen.  Total liver RNA was isolated from frozen tissue as described (T. Tsuchiya, J.M. Dhahbi, X. Cui, P.L. Mote, A. Bartke, S.R. Spindler, Physiological Genomics, Submitted). mRNA levels were measured using the Affymetrix mouse U74Av2 array according to standard protocols. After hybridization, arrays were scanned using a Hewlett-Packard GeneArray Scanner. Image analysis was performed as described (Cao SX, Dhahbi JM, Mote PL, and Spindler SR. Genomic profiling of short- and long-term caloric restriction effects in the liver of aging mice. Proc Natl Acad Sci U S A 98: 10630-10635, 2001). A more detailed description of the methods can be found in (T. Tsuchiya, J.M. Dhahbi, X. Cui, P.L. Mote, A. Bartke, S.R. Spindler, Physiological Genomics, Submitted).
Keywords = Ames dwarf
Keywords = mouse
Keywords = Affymetrix
Keywords = caloric restriction

source_name: Liver of female Ames dwarf mouse (df/df) fed 30% less of the standard pelleted diet with respect to the amount consumed by female ad libitum fed df/df mice


title: Young 4

status: Public on Jan 10 2005

type: RNA

city: Lexington

first: Eric

middle: M

last: Blalock

state: KY

address: 800 Rose St.

department: Molecular and Biomedical Pharmacology

country: USA

institute: University of Kentucky

description:
10 male Fischer rats, aged 4 months were trained sequentially on two tasks, SWM and OMT; hippocampal tissue collected 24 hours after a 7 day training/testing sequence
Keywords = bioinformatics
Keywords = gene expression
Keywords = memory
Keywords = synaptic plasticity
Keywords = myeli
Keywords = inflamation

molecule: total RNA

organism: Rattus norvegicus

source_name: hippocampal CA1 tissue


title: Young 2


title: DFCR4

city: Riverside

first: Stephen

middle: R.

last: Spindler

state: CA

department: Biochemistry

institute: University of California, Riverside

organism: Mus musculus


title: DFCR8


title: DFCR3


title: DFCR2


title: Mid-Aged 9

description:
10 male Fischer rats, aged 14 months were trained sequentially on two tasks, SWM and OMT; hippocampal tissue collected 24 hours after a 7 day training/testing sequence
Keywords = bioinformatics
Keywords = gene expression
Keywords = memory
Keywords = synaptic plasticity
Keywords = myeli
Keywords = inflamation


title: DFCR6


title: Mid-Aged 7


title: NORMAL 1

status: Public on Jan 12 2005

city: Bethesda

first: Roshanak

middle: T

last: Semnani

state: MD

address: Center Drive

department: LPD

institute: NIAID

description: Normal blood bank monocte donor

organism: Homo sapiens

source_name: human monocyte


title: Mid-Aged 10


title: DFAL2

description:
Female Ames dwarf mouse (df/df) with ad libitum access to water and standard pelleted food (LabDiet, PMI Feeds, Inc., St Louis, MO) caged with microisolator filter tops.  Mice were killed between 24 to 26 months of age, tissues removed, rapidly frozen on dry ice, and stored in liquid nitrogen. Total liver RNA was isolated from frozen tissue as described (T. Tsuchiya, J.M. Dhahbi, X. Cui, P.L. Mote, A. Bartke, S.R. Spindler, Physiological Genomics, Submitted). mRNA levels were measured using the Affymetrix mouse U74Av2 array according to standard protocols. After hybridization, arrays were scanned using a Hewlett-Packard GeneArray Scanner. Image analysis was performed as described (Cao SX, Dhahbi JM, Mote PL, and Spindler SR. Genomic profiling of short- and long-term caloric restriction effects in the liver of aging mice. Proc Natl Acad Sci U S A 98: 10630-10635, 2001). A more detailed description of the methods can be found in (T. Tsuchiya, J.M. Dhahbi, X. Cui, P.L. Mote, A. Bartke, S.R. Spindler, Physiological Genomics, Submitted).
Keywords = Ames dwarf
Keywords = mouse
Keywords = Affymetrix
Keywords = caloric restriction

source_name: Liver of female Ames dwarf mouse (df/df) with ad libitum access to standard pelleted food


title: 26695

status: Public on Jan 17 2005

city: Moffett Field

first: Waraporn

last: Tongprasit

institute: NASA Ames Research Center

description: Time after deflagellation=45 min

organism: Chlamydomonas reinhardtii

source_name: cells of wild type (srain cc-124), pH-mediated severing


title: DFAL8


title: 26015

description: Time after deflagellation=30 min


title: AML patient M1282 (Repl. 1)

city: Oxford

first: Andrea

last: Pellagatti

address: John Radcliffe Hospital

department: NDCLS, RDM

country: United Kingdom

institute: University of Oxford

description: The patient RNA was compared to the normal RNA pool using a T7-based amplification method: 1 microgram of total RNA was reverse-transcribed using a T7-oligodT primer and then labelled aRNAs produced via in vitro transcription in the presence of either Cy3-UTP or Cy5-UTP. The labelled aRNAs were then purified and hybridized competitively to the microarray.

source_name: Neutrophils from 7 healthy controls (RNA pooled)

source_name: Neutrophils from AML patient


title: DFCR5


title: DFAL7


title: MDS patient MDS5 (Repl. 2)

source_name: Neutrophils from MDS patient


title: Aged 8

description:
10 male Fischer rats, aged 24 months were trained sequentially on two tasks, SWM and OMT; hippocampal tissue collected 24 hours after a 7 day training/testing sequence
Keywords = bioinformatics
Keywords = gene expression
Keywords = memory
Keywords = synaptic plasticity
Keywords = myeli
Keywords = inflamation


title: Aged 2


title: Aged 7


title: Mid-Aged 1


title: DFAL6


title: Aged 10


title: DFCR1


title: Aged 9


title: Mid-Aged 2


title: PC3M_high_serum

status: Public on Jan 09 2005

city: San Diego

first: Yipeng

last: Wang

institute: Vaccine Research Institute of San Diego

description: PC3M are grown in high serum concentration. PC3M total RNA are purified, amplified, labeled, hybridized with Affymetrix HuGeneFL array using Affymetrix standard procedure.

source_name: PC3M prostate cancer cell line


title: Aged 5


title: DFAL1


title: DFAL3


title: Mid-Aged 3


title: LNCap_low_serum

description: LNCaP are grown in low serum concentration. PC3M total RNA are purified, amplified, labeled, hybridized with Affymetrix HuGeneFL array using Affymetrix standard procedure.

source_name: LNCaP prostate cancer cell line


title: LNCap_high_serum

description: LNCaP are grown in high serum concentration. PC3M total RNA are purified, amplified, labeled, hybridized with Affymetrix HuGeneFL array using Affymetrix standard procedure.

source_name: LNCap


title: Ad-Myo-Rep1

city: Little Rock

first: Marjorie

middle: L

last: Beggs

state: AR

address: 629 S. Elm Street

department: Geriatrics

institute: University of Arkansas for Medical Sciences

description: Adult primary myoblasts pooled from four 8 month old DBA/2JNIA mice.

source_name: Adult primary myoblasts


title: Mid-Aged 4


title: Mid-Aged 5


title: Ad-Myo-Rep2


title: Mid-Aged 6


title: PC3M_low_serum

description: PC3M are grown in low serum concentration. PC3M total RNA are purified, amplified, labeled, hybridized with Affymetrix HuGeneFL array using Affymetrix standard procedure.

source_name: PC3M prostate cancer cell lines


title: Ag-Myo-Rep2

description: Aged primary myoblasts pooled from four 23 month old DBA/2JNIA mice.

source_name: Aged primary myoblasts


title: Aged 4


title: DFAL5


title: Aged 6


title: Mid-Aged 8


title: Aged 1


title: Ag-Myo-Rep1


title: MDS patient CH (Repl. 1)


title: Aged 3


title: DFAL4


title: Txnip deficient tumor 27 months sample 3

status: Public on Jan 07 2005

city: Los Angeles

first: Sonal

middle: Suresh

last: Sheth

address: 10833 Le Conte Avenue

department: Cardiology

institute: UCLA

description:
normal section from mouse liver was dissected from Txnip deficient mice at 27 months of age.  RNA was extracted using TRIzol. Targets were produced using standard Affymetrix procedures.
This sample is also known as 4TC_signal.
Keywords = Mus musculus, liver tumor, hepatocellular carcinoma

source_name: liver


title: Txnip deficient normal 24 months sample 3

description:
normal section from mouse liver was dissected from Txnip deficient mice at 24 months of age.  RNA was extracted using TRIzol. Targets were produced using standard Affymetrix procedures.
This sample is also known as 3NC_signal.
Keywords = Mus musculus, liver tumor, hepatocellular carcinoma


title: Txnip deficient tumor 24 months sample 3

description:
tumor section from mouse liver was dissected from Txnip deficient mice at 24 months of age.  RNA was extracted using TRIzol. Targets were produced using standard Affymetrix procedures.
This sample is also known as 3TC_signal.
Keywords = Mus musculus, liver tumor, hepatocellular carcinoma


title: Txnip deficient tumor 27 months sample 2

description:
normal section from mouse liver was dissected from Txnip deficient mice at 27 months of age.  RNA was extracted using TRIzol. Targets were produced using standard Affymetrix procedures.
This sample is also known as 4TB_signal.
Keywords = Mus musculus, liver tumor, hepatocellular carcinoma


title: Txnip deficient tumor 27 months sample 1

description:
normal section from mouse liver was dissected from Txnip deficient mice at 27 months of age.  RNA was extracted using TRIzol. Targets were produced using standard Affymetrix procedures.
This sample is also known as 4TA_signal.
Keywords = Mus musculus, liver tumor, hepatocellular carcinoma


title: Txnip deficient nontumor adjacent 22 months sample 1

description:
nontumor section from mouse liver was dissected from Txnip deficient mice at 22 months of age.  RNA was extracted using TRIzol. Targets were produced using standard Affymetrix procedures.
This sample is also known as 2NA_signal.
Keywords = Mus musculus, liver tumor, hepatocellular carcinoma


title: Txnip deficient nontumor adjacent 22 months sample 2

description:
nontumor section from mouse liver was dissected from Txnip deficient mice at 22 months of age.  RNA was extracted using TRIzol. Targets were produced using standard Affymetrix procedures.
This sample is also known as 2NB_signal.
Keywords = Mus musculus, liver tumor, hepatocellular carcinoma


title: Txnip deficient tumor 22 months sample 3

description:
tumor section from mouse liver was dissected from Txnip deficient mice at 22 months of age.  RNA was extracted using TRIzol. Targets were produced using standard Affymetrix procedures.
This sample is also known as 2TC_signal.
Keywords = Mus musculus, liver tumor, hepatocellular carcinoma


title: Txnip deficient tumor 24 months sample 1

description:
tumor section from liver was dissected from Txnip deficient mice at 24 months of age.  RNA was extracted using TRIzol. Targets were produced using standard Affymetrix procedures.
This sample is also known as 3TA_signal.
Keywords = Mus musculus, liver tumor, hepatocellular carcinoma


title: Txnip deficient tumor 22 months sample 1

description:
tumor section from mouse liver was dissected from Txnip deficient mice at 22 months of age.  RNA was extracted using TRIzol. Targets were produced using standard Affymetrix procedures.
This sample is also known as 2TA_signal.
Keywords = Mus musculus, liver tumor, hepatocellular carcinoma


title: M257SE+RT

status: Public on Jan 08 2005

city: Columbia

first: Sachin

middle: S

last: Bhusari

state: MO

address: 920 East Campus Drive

department: Animal Sciences

institute: Univ of Missouri

description: TRY

source_name: Mouse M257 challanged with Endophyte-infected diet

source_name: Universal Mouse Reference RNA obtained from Stratagene. RNA was extracted from 11 different cell lines


title: Txnip deficient normal 24 months sample 1

description:
normal section from mouse liver was dissected from Txnip deficient mice at 24 months of age.  RNA was extracted using TRIzol. Targets were produced using standard Affymetrix procedures.
This sample is also known as 3NA_signal.
Keywords = Mus musculus, liver tumor, hepatocellular carcinoma


title: skeletal muscle of adrenalectomized mice 3h after an injection of glucocorticoids

status: Public on Jan 06 2005

city: Quebec City

first: Andre

last: Boivin

state: Quebec

address: 2705 Boul. Laurier

department: SAGE Laboratory

country: Canada

institute: Laval University Hospital Center Research Center

description:
Ten mice were adrenalectomized, and received an IP injection of cortisol (0.1mg) 3h before experiment. Gastrocnemius muscle were dissected and pooled together.
Total RNA was isolated by Trizol. Targets were produced using standard Affymetrix procedures. Scanned images were analyzed with the MAS 5.0 software. No replicate was made.
Keywords = mouse, skeletal muscle, adrenalectomy, glucocorticoids

source_name: skeletal muscle (gastrocnemius)


title: Txnip deficient normal 24 months sample 2

description:
normal section from mouse liver was dissected from Txnip deficient mice at 24 months of age.  RNA was extracted using TRIzol. Targets were produced using standard Affymetrix procedures.
This sample is also known as 3NB_signal.
Keywords = Mus musculus, liver tumor, hepatocellular carcinoma


title: Txnip deficient tumor 22 months sample 2

description:
tumor section from mouse liver was dissected from Txnip deficient mice at 22 months of age.  RNA was extracted using TRIzol. Targets were produced using standard Affymetrix procedures.
This sample is also known as 2TB_signal.
Keywords = Mus musculus, liver tumor, hepatocellular carcinoma


title: skeletal muscle of adrenalectomized mice

description:
Ten Mice were adrenalectomized one week before experiment. Gastrocnemius muscle were dissected and pooled together.
Total RNA was isolated by Trizol. Targets were produced using standard Affymetrix procedures. Scanned images were analyzed with the MAS 5.0 software. No replicate was made.
Keywords = mouse, skeletal muscle, adrenalectomy


title: VPA-NL2-B

status: Public on Jan 04 2005

city: Philadelphia

first: Jennifer

middle: Rebecca

last: Wood

state: PA

address: 421 Curie Blvd

department: Center for Research on Reproduction and Women's Health

institute: University of Pennsylvania

description: theca cells obtained from normal ovary and maintained in long-term culture; sample was treated with 500 uM sodium valproate for 48 hours prior to RNA collection

source_name: theca


title: UNT-PCOS3-B

description: theca cells obtained from PCOS ovary and maintained in long-term culture; no treatment was applied to this sample


title: skeletal muscle of adrenalectomized mice 24h after an injection of glucocorticoids

description:
Ten mice were adrenalectomized, and received an IP injection of cortisol (0.1mg) 24h before experiment. Gastrocnemius muscle were dissected and pooled together.
Total RNA was isolated by Trizol. Targets were produced using standard Affymetrix procedures. Scanned images were analyzed with the MAS 5.0 software. No replicate was made.
Keywords = mouse, skeletal muscle, adrenalectomy, glucocorticoids


title: UNT-PCOS4-B


title: Txnip deficient nontumor adjacent 22 months sample 3

description:
nontumor section from mouse liver was dissected from Txnip deficient mice at 22 months of age.  RNA was extracted using TRIzol. Targets were produced using standard Affymetrix procedures.
This sample is also known as 2NC_signal.
Keywords = Mus musculus, liver tumor, hepatocellular carcinoma


title: VPA-NL4-B


title: UNT-PCOS 5

description: theca cells from a PCOS ovary maintained in long-term culture, no treatment carried out for this sample

source_name: Theca


title: VPA-NL 2

description: theca cells from a normal ovary maintained in long-term culture, cells treated with 500uM valproic acid for 48 hours


title: VPA-NL1-B


title: skeletal muscle of intact mice

description:
Gastrocnemius muscle were dissected from 10 mice and pooled together. Total RNA was isolated by Trizol.
Targets were produced using standard Affymetrix procedures. Scanned images were analyzed with the MAS 5.0 software. No replicate was made.
Keywords = mouse, skeletal muscle


title: VPA-NL 4


title: UNT-PCOS 4


title: UNT-PCOS2-B


title: UNT-PCOS5-B


title: VPA-NL 3


title: VPA-NL3-B


title: UNT-PCOS 3


title: VPA-NL 1


title: UNT-NL4-B

description: theca cells obtained from normal ovaries and maintained in long-term culture; no treatment was applied to this sample


title: UNT-NL 4

description: theca cells from a normal ovary maintained in long-term culture, no treatment carried out for this sample


title: Txnip deficient tumor 24 months sample 2

description:
tumor section from mouse liver was dissected from Txnip deficient mice at 24 months of age.  RNA was extracted using TRIzol. Targets were produced using standard Affymetrix procedures.
This sample is also known as 3TB_signal.
Keywords = Mus musculus, liver tumor, hepatocellular carcinoma


title: UNT-NL 3


title: UNT-PCOS 1


title: SD Sprague dawley control

status: Public on Jan 03 2005

city: Berlin

first: Maren

last: Wellner

address: Robert-Rössle-Str. 10

country: Germany

description:
Rats overexpressing the human renin and angiotensinogen genes die after seven weeks of end organ damage. They develop hypertension, heart hypertrophy and proteinuria.
Keywords = hypertension
Keywords = heart hypertrophy

source_name: rat heart left ventrikel


title: dTGR


title: UNT-NL1-B

description: Theca cells obtained from a normal ovary and maintained in long-term culture.  No treatment was applied to this sample

source_name: Theca cell


title: UNT-NL 2


title: UNT-NL2-B

description: theca cells obtained from a normal ovary and maintained in long-term cultures; no treatment was applied to this sample


title: dTGR Losartan


title: UNT-NL3-B


title: UNT-PCOS 2


title: P.sojae race 7 at 48h, rep 3 #13

status: Public on Jan 01 2005

city: London

first: Mark

last: Gijzen

state: ON

address: 1391 Sandford St

department: Agriculture & AgriFood Canada

institute: SCPFRC London

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 7
Lot batch = 2000120001

organism:
Glycine max
Phytophthora sojae

source_name: 48h race 7 infected, rep 3

source_name: 48h control, rep 3


title: P.sojae race 5 at 48h, rep 3 #9

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 5
Lot batch = 2000120508

source_name: 48h race 5 infected, rep 3


title: P.sojae race 2 infection, rep 3 #6

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 2, P6497
Lot batch = 2000120101

source_name: 48h race 2 infected, rep 3


title: P.sojae race 7 at 48h, rep 3 #11

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 7
Lot batch = 2000120117


title: P.sojae race 5 at 48h, rep 3#8

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 5
Lot batch = 2000120543


title: UNT-NL 1


title: P.sojae race 7 at 48h, rep 3 #14

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 7
Lot batch = 2000120541


title: P.sojae race 1 at 48h, rep 3 #3

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 1, P-92
Lot batch = 2000120086

source_name: 48h race 1 infected, rep 3


title: P.sojae race 1 at 48h, rep 3 #4

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 1, P-92
Lot batch = 2000120114


title: P.sojae race 5 at 48h, rep 3 #10

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 5
Lot batch = 2000120079


title: P.sojae race 7 at 48h, rep 3 #12

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 7
Lot batch = 2000120538


title: P.sojae race 2 at 48h, rep 3 #7

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 2, P6497
Lot batch = 2000120078


title: P.sojae race 1 at 48h, rep 3 #2

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 1, P-92
Lot batch = 2000120116

source_name: 48h control


title: P.sojae race 2 at 48h, rep 3 #5

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 2
Lot batch = 2000120551


title: UNT-PCOS1-B

description: theca cells obtained from PCOS ovary and maintained in long-term culture; no treatment was applied to this sample


title: P.sojae race 1 at 48h, rep2 #3

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 1, isolate P-92
Lot batch = 2000120109

source_name: 48h race 1 infected, rep 2

source_name: 48h control, rep 2


title: P.sojae race 7 at 48h, rep2 #15

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 7, isolate P-92
Lot batch = 2000120512

source_name: 48h race 7 infected, rep 2


title: P.sojae race 7 at 48h, rep 2, #16

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 7, isolate P-92
Lot batch = 2000120505


title: P.sojae race 5 at 48h, rep 2 #11

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 5, isolate P-92
Lot batch = 2000120105

source_name: 48h race 5 infected, rep 2


title: P.sojae race 7 at 48h, rep 2, #13

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 7, isolate P-92
Lot batch = 2000120112


title: P.sojae race 5 at 48h, rep 2, #9

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 5, isolate P-92
Lot batch = 2000120516


title: P.sojae race 7 at 48h, rep2, #14

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 7, isolate P-92
Lot batch = 2000002647


title: P.sojae race 5 at 48h, rep 2 #12

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 5, isolate P-92
Lot batch = 2000120513


title: P.sojae race 2 at 48h, rep2 #7

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 2, P6497
Lot batch = 2000120536

source_name: 48h race 2 infected, rep 2


title: P.soaje race 7 at 48h, rep 1, #16

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 7, P-92, biological rep 1
Lot batch = 2000120526

source_name: 48h race 7 infected, rep 1

source_name: 48h control, rep 1


title: P.sojae race 5 at 48h, rep 1, #10

description:
Soybean cv Harosoy (Rps7) at 48h, control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P. sojae race 5, isolate P-92
Lot batch = 2000120540

source_name: 48h race 5 infected, rep 1


title: P.sojae race 5 at 48h, rep2 #10

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 5, isolate P-92
Lot batch = 2000002646

source_name: 48h race 5 infected at 48h, rep 2


title: P.sojae race 5 at 48h, rep 1, #12

description:
Soybean cv Harosoy (Rps7) at 48h, control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P. sojae race 5, isolate P-92
Lot batch = 2000120542


title: P.sojae race 2 at 48h, rep2 #8

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 2, P6497
Lot batch = 2000120100


title: P.sojae race 2 at 48h, rep 2, #5

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 2, P6497
Lot batch = 2000120113


title: P.sojae race 1 at 48h, rep 2 #1

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 1, P-92
Lot batch = 2000120546


title: P.sojae race 2 at 48h, rep 1, #6

description:
Soybean cv Harosoy (Rps7) at 48h, control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P. sojae race 2, isolate P6497
Lot batch = 2000120118

source_name: 48h race 2 infected, rep 1


title: P.sojae race 1 at 48h, rep 2, #2

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 1, P-92
Lot batch = 2000120511


title: P.sojae race 2 at 48h, rep2, #6

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 2, P6497
Lot batch = 2000120510


title: P.sojae race 5 at 48h, rep 1, #9

description:
Soybean cv Harosoy (Rps7) at 48h, control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P. sojae race 5, isolate P-92
Lot batch = 2000120098


title: P.sojae race 7 at 48h, rep 1, #14

description:
Soybean cv Harosoy (Rps7) at 48h, control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P. sojae race 7, isolate P-92
Lot batch = 2000120509


title: P.sojae race 1 at 48h, rep 2 #4

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 1, P-92
Lot batch = 2000120507


title: P.sojae race 5 at 48h, rep 1, #11

description:
Soybean cv Harosoy (Rps7) at 48h, control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P. sojae race 5, isolate P-92
Lot batch = 2000002650


title: P.sojae race 7 at 48h, rep 1, #15

description:
Soybean cv Harosoy (Rps7) at 48h, control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P. sojae race 7, isolate P-92
Lot batch = 2000002649


title: P.sojae race 2 at 48h, rep 1, #7

description:
Soybean cv Harosoy (Rps7) at 48h, control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P. sojae race 2, isolate P6497
Lot batch = 2000120108


title: P.sojae race 7 at 48h, rep 1,#13

description:
Soybean cv Harosoy (Rps7) at 48h, control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P. sojae race 7, isolate P-92
Lot batch = 2000120107


title: Terminal heart failure

description:
Rats overexpressing the human renin and angiotensinogen genes die after seven weeks of end organ damage. They develop hypertension, heart hypertrophy and proteinuria.
Keywords = hypertension
Keywords = heart hypertrophy

source_name: rat heart left ventrikel


title: 86-psbs_5

city: Chicago

first: christos

last: Noutsos

institute: University of Chicago

description: Comparison of the Arabidopsis psbs mutant lacking Photosystem I protein PSII-S versus WT. X.P. Li et al., Proc Natl Acad Sci U S A 99 (2002), pp. 15222-15227

organism: Arabidopsis thaliana

source_name: Arabidopsis psbs mutant, ecotype Columbia 0


title: 86-WT_5

source_name: WT, ecotype Columbia 0


title: 86-WT_6


title: 86-psbs_6


title: P.sojae race 1 at 48h, rep 1, #3

description:
Soybean cv Harosoy (Rps7) at 48h, control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P. sojae race 1, P-92
Lot batch = 2000002648

source_name: 48h race 1 infected, rep 1


title: 85-psao_6

description: Comparison of the Arabidopsis psao mutant lacking Photosystem I protein PSI-O versus WT. A. Dietzmann, D. Leister, unpublished

source_name: Arabidopsis psao mutant, ecotype Columbia 0


title: 86-WT_3


title: 85-psao_4


title: 86-WT_1


title: 85-WT_6


title: 86-WT_2


title: 86-psbs_1


title: P.sojae race 2 at 48h, rep 1 #5

description:
Soybean cv Harosoy (Rps7) at 48h, control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P. sojae race 2, isolate P6497
Lot batch = 2000120515


title: 86-WT_4


title: 86-psbs_2


title: 86-psbs_4


title: 85-psao_5


title: 85-WT_3


title: 85-psao_3


title: 85-WT_4


title: 85-WT_5


title: 85-psao_2


title: P.sojae race 1 at 48h, rep 1, #1

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P. sojae race 1, P-92
biological rep 1
Lot batch = 2000120097


title: P.sojae race 1 at 48h, rep 1, #4

description:
Soybean cv Harosoy (Rps7) at 48h, control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P. sojae race 1, P-92
Lot batch = 2000120549


title: P.sojae race 1 at 48h, rep 1, #2

description:
Soybean cv Harosoy (Rps7) at 48h, control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P. sojae race 1, P-92
Lot batch = 2000120119


title: 85-WT_2


title: 84-WT_6

description: Comparison of the Arabidopsis psan mutant lacking Photosystem I protein PSI-N versus WT. A. Dietzmann, D. Leister, unpublished


title: 84-psan_6

source_name: Arabidopsis psan mutant, ecotype Columbia 0


title: 85-psao_1


title: 85-WT_1


title: 84-psan_5


title: 84-WT_5


title: 84-WT_3


title: 84-WT_4


title: 83-WT_6

description: Comparison of the Arabidopsis psak mutant lacking Photosystem I protein PSI-K versus WT. C. Varotto  et al, Plant Physiol. 129 (2002), pp. 616-624


title: 83-psak_2

source_name: Arabidopsis psak mutant, ecotype Columbia 0


title: 83-psak_1


title: 84-psan_2


title: 84-psan_4


title: 83-psak_6


title: 84-psan_1


title: 84-WT_2


title: 83-WT_3


title: 83-WT_5


title: 83-WT_4


title: 83-psak_4


title: 83-WT_2


title: 83-psak_3


title: 83-psak_5


title: 84-WT_1


title: 84-psan_3


title: 81-psah2_5

description: Comparison of the Arabidopsis psah2 mutant lacking Photosystem I protein PSI-H2 versus WT. C. Varotto  et al, Plant Physiol. 129 (2002), pp. 616-624

source_name: Arabidopsis psah2 mutant, ecotype Columbia 0


title: 82-WT_4

description: Comparison of the Arabidopsis psah2k doublemutant lacking Photosystem I protein PSI-E1 and PSI-K versus WT. C. Varotto  et al, Plant Physiol. 129 (2002), pp. 616-624


title: 83-WT_1


title: 82-psah2k_4

source_name: Arabidopsis psah2k doublemutant, ecotype Columbia 0


title: 81-psah2_6


title: 82-WT_3


title: 81-WT_6


title: 82-WT_1


title: 81-psah2_3


title: 81-WT_2


title: 81-WT_5


title: 81-WT_3


title: 82-WT_2


title: 81-psah2_2


title: 82-psah2k_1


title: 81-WT_4


title: 81-psah2_4


title: 82-psah2k_3


title: 80-WT_8

description: Comparison of the Arabidopsis psag mutant lacking Photosystem I protein PSI-G versus WT. C. Varotto  et al, Plant Physiol 129 (2002), pp. 616-624


title: 80-psag_6

source_name: Arabidopsis psag mutant, ecotype Columbia 0


title: 80-WT_7


title: 80-psag_7


title: 81-WT_1


title: 81-psah2_1


title: 80-psag_8


title: 80-psag_5


title: 80-WT_6


title: 80-WT_5


title: 80-psag_4


title: 80-WT_4


title: 80-WT_3


title: 80-psag_2


title: 80-psag_3


title: 79-WT_6

description: Comparison of the Arabidopsis psaf antisense line lacking Photosystem I protein PSI-F versus WT. A. Haldrup et al., J Biol Chem 275 (2000), pp. 31211-31218


title: P.sojae race 2 at 48h, rep 1 #8

description:
Soybean cv Harosoy (Rps7) at 48h, control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P. sojae race 2, isolate P6497
Lot batch = 2000120115


title: P.sojae race 1 at 48h, rep 3 #1

description:
Soybean cv Harosoy (Rps7), control hypocotyl inoculated with water, infected hypocotyl inoculated with zoospores from P.sojae race 1, P-92
Lot batch = 2000120514

source_name: 48h control rep 3

source_name: 48h race 1 infected, rep 3


title: 80-WT_2


title: 80-psag_1


title: 79-WT_4


title: 79-psaf_4

source_name: Arabidopsis psaf mutant, ecotype Columbia 0


title: 79-psaf_6


title: 79-WT_5


title: 79-psaf_3


title: 79-psaf_5


title: 80-WT_1


title: 79-psaf_2


title: 79-WT_1


title: 79-WT_3


title: 79-WT_2


title: 78-psae2_6

description: Comparison of the Arabidopsis psae2 mutant lacking Photosystem I protein PSI-E2 versus WT. A. Ihnatowicz, D. Leister, unpublished

source_name: Arabidopsis psae2 mutant, ecotype Columbia 0


title: 79-psaf_1


title: 86-psbs_3


title: 78-WT_6


title: 78-psae2_4


title: 78-psae2_5


title: 78-WT_5


title: 78-WT_4


title: 78-psae2_2


title: 78-WT_2


title: 78-WT_3


title: 78-psae2_3


title: 78-WT_1


title: 78-psae2_1


title: 77-WT_6

description: Comparison of the Arabidopsis psae1 mutant lacking Photosystem I protein PSI-E1 versus WT. C. Varotto et al., Plant J 22 (2000), pp. 115-124


title: 77-psae1_3

source_name: Arabidopsis psae1 mutant, ecotype Columbia 0


title: 77-psae1_2


title: 77-psae1_5


title: 77-WT_3


title: 77-WT_5


title: 77-psae1_4


title: 75-prors2_5

description: Comparison of the Arabidopsis prors2 mutant lacking prolyl tRNA synthetase versus WT.  P. Pesaresi, D. Leister, unpublished

source_name: Arabidopsis prors2 mutant, ecotype Columbia 0


title: 77-WT_2


title: 77-psae1_1


title: 77-psae1_6


title: 75-prors2_6


title: 77-WT_1


title: 75-WT_6


title: 75-WT_5


title: 82-psah2k_2


title: 75-prors2_4


title: 75-prors2_1


title: 75-WT_1


title: 75-WT_4


title: 75-WT_3


title: 74-WT_6

description: Comparison of the Arabidopsis prors1 mutant lacking prolyl tRNA synthetase versus WT. P. Pesaresi, D. Leister, unpublished


title: 74-prors1_5

source_name: Arabidopsis prors1 mutant, ecotype Columbia 0


title: 75-prors2_3


title: 75-prors2_2


title: 74-WT_5


title: 75-WT_2


title: 74-WT_3


title: 74-prors1_4


title: 74-prors1_6


title: 74-WT_4


title: 74-prors1_2


title: 74-WT_2


title: 73-prpl11_6

description: Comparison of the Arabidopsis prpl11 mutant lacking the plastid ribosomal protein PRPL11 versus WT. P. Pesaresi et al., Plant J 27 (2001), pp. 179-189

source_name: Arabidopsis prpl11 mutant, ecotype Columbia 0


title: 74-prors1_1


title: 74-WT_1


title: 74-prors1_3


title: 73-prpl11_4


title: 73-prpl11_5


title: 73-WT_6


title: 73-WT_5


title: 73-prpl11_3


title: 73-WT_3


title: 72-ppi2_6

description: Comparison of the Arabidopsis ppi2 mutant defective in import of chloroplast precursor proteins versus WT. J. Bauer et al., Nature 203 (2000), pp. 203-207

source_name: Arabidopsis ppi2 mutant, ecotype Wassilevskija


title: 73-WT_1

source_name: WT, ecotype Columbia 0


title: 73-WT_2


title: 72-WT_6

source_name: WT, ecotype Wassilevskija


title: 73-prpl11_2


title: 73-prpl11_1


title: 72-WT_5


title: 72-ppi2_7


title: 72-ppi2_4


title: 72-ppi2_8


title: 72-WT_8


title: 72-WT_7


title: 72-ppi2_5


title: 72-WT_3


title: 71-ppi1_4

description: Comparison of the Arabidopsis ppi1 mutant defective in import of chloroplast precursor proteins versus WT. S. Kubis et al., Plant Cell 15 (2003), pp. 1859-1871

source_name: Arabidopsis ppi1 mutant, ecotype Columbia 0


title: 71-ppi1_6


title: 71-WT_5


title: 72-WT_4


title: 72-WT_1


title: 72-ppi2_1


title: 72-ppi2_2


title: 71-WT_4


title: 72-WT_2


title: 71-ppi1_3


title: 71-WT_6


title: 71-ppi1_2


title: 71-WT_2


title: 70-no_mildew_6

description: Comparison of plants 2 days after mildew infection versus no infection.


title: 70-pmildew_6

source_name: WT, ecotype Columbia 0, 2 days after mildew infection


title: 70-pmildew_5


title: 71-ppi1_1


title: 71-WT_1


title: 71-WT_3


title: 70-pmildew_4


title: 70-no_mildew_5


title: 70-pmildew_2


title: 70-pmildew_1


title: 70-no_mildew_4


title: 70-no_mildew_2


title: 70-pmildew_3


title: 70-no_mildew_3


title: 66-WT_3

description: Comparison of the Arabidopsis petc mutant lacking the Rieske protein of cyt b6f complex versus WT. D. Maiwald et al., Plant Physiol 133 (2003), pp. 191-202

source_name: WT, ecotype Landsberg


title: 66-WT_2


title: 66-petc_2

source_name: Arabidopsis petc mutant, ecotype Landsberg


title: 66-petc_3


title: 66-petc_1


title: 66-WT_4


title: 66-petc_4


title: 66-WT_1


title: 70-no_mildew_1


title: 63-H2O_13

description: Comparison of plants grown on MS media containing 2% Sucrose versus plants grown on untreated MS media.

source_name: WT, ecotype Columbia 0, grown on MS media


title: 63-H2O_14


title: 63-pSuc_11

source_name: WT, ecotype Columbia 0, grown on MS media containing 2% Sucrose


title: 63-H2O_11


title: 63-pSuc_12


title: 63-H2O_10


title: 63-pSuc_13


title: 63-pSuc_8


title: 63-H2O_8


title: 63-H2O_12


title: 63-H2O_7


title: 63-pSuc_14


title: 63-pSuc_7


title: 63-H2O_9


title: 63-pSuc_10


title: 73-WT_4


title: 77-WT_4


title: 63-pSuc_5


title: 63-pSuc_9


title: 63-H2O_5


title: 63-H2O_6


title: 63-pSuc_4


title: 63-pSuc_3


title: 63-pSuc_6


title: 63-H2O_3


title: 71-ppi1_5


title: 63-H2O_4


title: 63-pSuc_2


title: 61-pSuc_3h_5

description: Comparison of plants treated for 3 h in MS+60mMSuc versus H2O treatment. K. Deuschle, W. Frommer, unpublished

source_name: WT, ecotype Wassilevskija, treated for 3 h in MS+60mMSuc


title: 61-H2O_6


title: 61-pSuc_3h_6


title: 62-H2O_2

description: Comparison of plants treated for 6 h in MS+60mMSuc versus H2O treatment. K. Deuschle, W. Frommer, unpublished


title: 62-pSuc_6h_1

source_name: WT, ecotype Wassilevskija, treated for 6 h in MS+60mMSuc


title: 63-H2O_2


title: 61-H2O_4


title: 61-pSuc_3h_4


title: 62-H2O_6


title: 61-pSuc_3h_3


title: 63-pSuc_1


title: 63-H2O_1


title: 72-ppi2_3


title: 61-H2O_5


title: 62-pSuc_6h_6


title: 61-H2O_1


title: 62-pSuc_6h_5


title: 62-H2O_5


title: 60-pSuc_30min_6

description: Comparison of plants treated for 30 min in MS+60mMSuc versus H2O treatment. K. Deuschle, W. Frommer, unpublished

source_name: WT, ecotype Wassilevskija, treated for 30 min in MS+60mMSuc


title: 62-H2O_1


title: 61-pSuc_3h_2


title: 62-H2O_4


title: 61-H2O_2


title: 61-H2O_3


title: 61-pSuc_3h_1


title: 62-pSuc_6h_2


title: 60-H2O_6


title: 62-pSuc_6h_4


title: 60-H2O_5


title: 60-pSuc_30min_5


title: 60-pSuc_30min_3


title: 60-pSuc_30min_1


title: 60-H2O_4


title: 62-H2O_3


title: 62-pSuc_6h_3


title: 60-pSuc_30min_4


title: 60-H2O_1


title: 56-pStau_6

description: Comparison of plants treated for 4 h with H2O followed by 4 h treatment with 25 mM Staurosporin (pH 5,5) versus 8 h treatment with H20. A. Kandlbinder, K.J. Dietz, unpublished

source_name: WT, ecotype Columbia 0, treated for 4 h with H2O followed by 4 h treatment with 25 mM Staurosporin (pH 5,5)


title: 56-pStau_2


title: 56-H2O_3


title: 60-H2O_2


title: 56-H2O_4


title: 56-pStau_3


title: 56-H2O_5


title: 60-pSuc_30min_2


title: 60-H2O_3


title: 56-pStau_5


title: 56-H2O_6


title: 55-pPro_6h_2

description: Comparison of plants treated for 6 h with 100 mM proline to toxic levels of cellular proline versus H2O treatment.

source_name: WT, ecotype Wassilevskija, treated for 6 h with 100mM proline


title: 56-pStau_1


title: 55-pPro_6h_5


title: 55-pPro_6h_6


title: 56-H2O_1


title: 55-H2O_3


title: 55-H2O_2


title: 55-H2O_1


title: 55-H2O_6


title: 54-H2O_6

description: Comparison of plants treated for 3 h with 100 mM proline to toxic levels of cellular proline versus H2O treatment.


title: 55-pPro_6h_4


title: 55-H2O_5


title: 54-pPro_3h_6

source_name: WT, ecotype Wassilevskija, treated for 3 h with 100mM proline


title: 55-pPro_6h_1


title: 55-H2O_4


title: 55-pPro_6h_3


title: 56-pStau_4


title: 54-pPro_3h_4


title: 54-H2O_2


title: 56-H2O_2


title: 54-pPro_3h_5


title: 54-H2O_5


title: 54-H2O_3


title: 54-pPro_3h_2


title: 54-H2O_4


title: 54-pPro_3h_3


title: 54-pPro_3h_1


title: 54-H2O_1


title: 5-3weeks_2

description: Comparison of 3 weeks old plants versus 4 weeks old plants.

source_name: WT, ecotype Columbia 0, 3 weeks old


title: 5-3weeks_4


title: 53-H2O_6

description: Comparison of plants treated for 30 min with 100 mM proline to toxic levels of cellular proline versus H2O treatment.


title: 53-pPro_30min_5

source_name: WT, ecotype Wassilevskija, treated for 30 min with 100mM proline


title: 5-3weeks_1


title: 53-H2O_4


title: 5-4weeks_2

source_name: WT, ecotype Columbia 0, 4 weeks old


title: 53-pPro_30min_6


title: 53-pPro_30min_2


title: 5-4weeks_4


title: 5-4weeks_1


title: 53-H2O_3


title: 5-4weeks_3


title: 53-H2O_1


title: 5-3weeks_3


title: 53-H2O_2


title: 53-H2O_5


title: 52-pPro_2d_6

description: Comparison of plants treated for 48 h with 100mM proline to toxic levels of cellular proline versus no treatment. K. Deuschle, W. Frommer, unpublished

source_name: WT, ecotype Wassilevskija, treated for 48 h with 100mM proline


title: 52-H2O_6

source_name: WT, ecotype Wassilevskija


title: 52-H2O_4


title: 52-H2O_5


title: 52-pPro_2d_4


title: 53-pPro_30min_1


title: 52-H2O_3


title: 53-pPro_30min_3


title: 52-pPro_2d_5


title: 52-pPro_2d_3


title: 53-pPro_30min_4


title: 52-pPro_2d_2


title: 52-H2O_2


title: 52-pPro_2d_1


title: 52-H2O_1


title: 49-pFe_3

description: Comparison of plants grown under oxidative stress due to high-iron concentrations versus no treatment. C. Varotto, unpublished

source_name: WT, ecotype Columbia 0, grown at high-iron concentrations


title: 49-pFe_2


title: 49-H2O_3

source_name: WT, ecotype Columbia 0, grown at normal iron concentrations


title: 49-H2O_6


title: 4-4weeks_5

description: Comparison of 2 weeks old plants versus 4 weeks old plants.


title: 49-pFe_1


title: 49-H2O_2


title: 49-pFe_6


title: 49-H2O_1


title: 4-2weeks_3

source_name: WT, ecotype Columbia 0, 2 weeks old


title: 4-2weeks_2


title: 49-pFe_5


title: 4-4weeks_3


title: 4-4weeks_4


title: 49-pFe_4


title: 49-H2O_5


title: 49-H2O_4


title: 4-2weeks_1


title: 4-4weeks_2


title: 4-2weeks_6


title: 4-4weeks_6


title: 4-2weeks_5


title: 4-2weeks_4


title: 4-4weeks_1


title: 42-pAsc_6

description: Comparison of plants treated with 4 h with H2O followed by treatment of 4 h with 25 mM Ascorbat (pH 5,5) versus 8 h treatment with H20. A. Kandlbinder, K.J. Dietz, unpublished

source_name: WT, ecotype Columbia 0, treated for 4 h with H2O followed by treatment of 4 h with 25 mM Ascorbat (pH 5,5)


title: 42-pAsc_5


title: 42-H2O_5

source_name: WT, ecotype Columbia 0, treated for 8 h with H2O


title: 42-pAsc_4


title: 42-H2O_6


title: 42-pAsc_3


title: 42-H2O_4


title: 42-H2O_3


title: 41-mec_wou_6

description: Comparison of plants 2 days after mechanical wounding versus untreated plants.

source_name: WT, ecotype Columbia 0, plants were wounded by cutting in the leafes


title: 42-H2O_2


title: 42-pAsc_2


title: 42-pAsc_1


title: 41-no_wou_6

source_name: WT, ecotype Columbia 0


title: 41-mec_wou_3


title: 41-no_wou_4


title: 41-no_wou_5


title: 40-WT_5

description: Comparison of Arabidopsis mak3 mutant defective in cytoplasmic N-acetyltransferase versus WT. P. Pesaresi et al., Plant Cell 15 (2003), pp. 1817-1832


title: 41-mec_wou_4


title: 41-mec_wou_5


title: 40-WT_4


title: 40-mak3_4

source_name: Arabidopsis mak3 mutant, ecotype Columbia 0


title: 42-H2O_1


title: 41-no_wou_3


title: 41-no_wou_1


title: 41-no_wou_2


title: 41-mec_wou_1


title: 41-mec_wou_2


title: 40-WT_6


title: 40-mak3_6


title: 40-mak3_5


title: 40-mak3_3


title: 40-WT_3


title: 40-mak3_2


title: 40-WT_2


title: 40-mak3_1


title: 37-laf6_L_1h_6

description: Comparison of Arabidopsis laf6 mutant lacking the atABC1-transporter versus WT. laf6 exposed to normal light for 1 h after dark adaptation, WT dark adapted. S.G. Moeller et al., Genes Dev 15 (2001), pp. 90-103

source_name: Arabidopsis laf6 mutant, ecotype landsberg, exposed to normal light for 1 h after dark adaptation


title: 37-WT_D_6

source_name: WT, ecotype landsberg, dark adapted


title: 37-WT_D_5


title: 37-laf6_L_1h_5


title: 37-laf6_L_1h_4


title: 37-WT_D_4


title: 40-WT_1


title: 37-laf6_L_1h_3


title: 36-laf6_D_6

description: Comparison of Arabidopsis laf6 mutant lacking the atABC1-transporter versus WT, both dark adapted. S.G. Moeller et al., Genes Dev 15 (2001), pp. 90-103

source_name: Arabidopsis laf6 mutant, ecotype landsberg, dark adapted


title: 37-WT_D_2


title: 36-laf6_D_3


title: 37-laf6_L_1h_2


title: 37-WT_D_3


title: 37-laf6_L_1h_1


title: 35-kn09pPro_2d_6

description: Comparison of the proline-hypersensitive Arabidopsis kn09 mutant blocked in mitochondrial proline catabolism and treated with proline (roots treated with MS+100mM proline for 48 h) versus WT (roots treated with MS+100mM Glc for 48 h). K. Deuschle et al., Plant J 27 (2001), pp. 345-356

source_name: Arabidopsis kn09 mutant, ecotype Wassilevskija, treated with MS+100mM proline for 48 h


title: 36-WT_D_6


title: 36-laf6_D_4


title: 36-WT_D_5


title: 36-WT_D_3


title: 36-laf6_D_5


title: 37-WT_D_1


title: 36-WT_D_4


title: 36-laf6_D_2


title: 35-WT_6

source_name: WT, ecotype Wassilevskija, roots treated with MS+100mM Glc for 48 h


title: 36-WT_D_1


title: 36-WT_D_2


title: 35-kn09pPro_2d_5


title: 35-WT_5


title: 36-laf6_D_1


title: 35-kn09pPro_2d_4


title: 35-kn09pPro_2d_3


title: 35-WT_4


title: 35-WT_3


title: 35-WT_2


title: 35-kn09pPro_2d_2


title: 35-kn09pPro_2d_1


title: 35-WT_1


title: 34-kn09_6

description: Comparison of the proline-hypersensitive Arabidopsis kn09 mutant blocked in mitochondrial proline catabolism (roots treated with MS+100mM Glc for 48 h) versus WT (roots treated with MS+100mM Glc for 48 h). K. Deuschle et al., Plant J 27 (2001), pp. 345-356

source_name: Arabidopsis kn09 mutant, ecotype Wassilevskija, roots treated with MS+100mM Glc for 48 h


title: 34-kn09_4


title: 34-WT_4

source_name: WT, ecotype Wassilevskija,  roots treated with MS+100mM Glc for 48 h


title: 34-WT_6


title: 34-kn09_5


title: 34-kn09_2


title: 33-WT_8

description: Comparison of Arabidopsis hcf145 mutant defective in the assembly of photosystem I versus WT. L. Lezhneva et al., Plant J 37 (2004), pp. 174-185


title: 34-WT_2


title: 34-WT_3


title: 33-hcf145_7

source_name: Arabidopsis gun5 mutant, ecotype Wassilevskija


title: 33-WT_7

source_name: WT, ecotype Wassilevskija


title: 34-kn09_3


title: 33-hcf145_6


title: 34-WT_1


title: 33-hcf145_10


title: 33-WT_10


title: 33-hcf145_8


title: 34-kn09_1


title: 33-hcf145_9


title: 33-WT_9


title: 34-WT_5


title: 33-WT_5


title: 33-WT_6


title: 33-WT_4


title: 33-WT_3


title: 33-hcf145_5


title: 33-hcf145_3


title: 33-hcf145_2


title: 33-hcf145_4


title: 33-hcf145_1


title: 33-WT_1


title: 33-WT_2


title: 3-2h_rec_5

description: Comparison of plants recovered for 2 h in light after 1 h of darkness versus light adapted plants.

source_name: WT, ecotype Columbia 0, 1 h recovery in light after exposure to darkness for 1 h


title: 3-LA_1

source_name: WT, ecotype Columbia 0, light adapted


title: 3-LA_2


title: 3-LA_6


title: 3-2h_rec_2


title: 3-2h_rec_4


title: 3-2h_rec_3


title: 3-LA_3


title: 3-LA_4


title: 32-gun5_5

description: Comparison of Arabidopsis gun5 mutant lacking a ChlH subunit of Mg-chelatase versus WT. R.E. Susek et al., Cell 74 (1993), pp. 787-799; N. Mochizuki et al., Proc Natl Acad Sci U S A 98 (2001), pp. 2053-2058

source_name: Arabidopsis gun5 mutant, ecotype Columbia 0


title: 3-2h_rec_1


title: 32-gun5_8


title: 3-LA_5


title: 3-2h_rec_6


title: 32-WT_6


title: 32-gun5_7


title: 32-WT_8


title: 32-WT_5


title: 32-WT_7


title: 32-gun5_4


title: 32-gun5_3


title: 32-WT_4


title: 32-WT_3


title: 32-gun5_6


title: 32-gun5_2


title: 32-WT_2


title: 31-gun1_6

description: Comparison of Arabidopsis gun1-1 mutant defective in plastid signaling (protein unknown) versus WT. R.E. Susek et al., Cell 74 (1993), pp. 787-799

source_name: Arabidopsis gun 1-1 mutant, ecotype Columbia 0


title: 31-gun1_5


title: 31-gun1_4


title: 32-WT_1


title: 31-gun1_7


title: 31-WT_6


title: 32-gun5_1


title: 31-WT_5


title: 31-gun1_3


title: 31-WT_3


title: 31-WT_2


title: 31-gun1_1


title: 31-WT_4


title: 31-WT_7


title: 31-WT_8


title: 31-gun1_2


title: 31-gun1_8


title: 31-WT_1


title: 30-fluL_6

description: Comparison of Arabidopsis flu mutant lacking FLU, a regulator of chlorophyll biosynthesis versus WT. Both harvested 30' after reexposure to light after 12h dark period. R. Meskauskiene et al., Proc Natl Acad Sci U S A 98 (2001), pp. 12826-12831

source_name: Arabidopsis flu mutant, ecotype Landsberg, harvested 30' after reexposure to light after one 12h dark period


title: 30-WT_6

source_name: WT, ecotype Landsberg, harvested 30' after reexposure to light after one 12h dark period


title: 30-WT_4


title: 30-WT_5


title: 30-fluL_4


title: 30-fluL_5


title: 30-fluL_2


title: 30-fluL_3


title: 30-WT_3


title: 30-fluL_1


title: 29-fluD_6

description: Comparison of Arabidopsis flu mutant lacking FLU, a regulator of chlorophyll biosynthesis, versus WT. Both harvested after a period of 12 h darkness. R. Meskauskiene et al., Proc Natl Acad Sci U S A 98 (2001), pp. 12826-12831

source_name: Arabidopsis flu mutant, ecotype Landsberg, dark adapted for 12 h


title: 30-WT_2


title: 29-fluD_5


title: 29-WT_6

source_name: WT, ecotype Landsberg, dark adapted for 12 h


title: 29-WT_5


title: 29-fluD_4


title: 29-WT_4


title: 29-fluD_3


title: 30-WT_1


title: 29-WT_3


title: 28-cue1_6

description: Comparison of Arabidopsis cue1-1 mutant lacking phosphoenol pyruvate translocator versus WT. S.J. Streatfield et al., Plant Cell 11 (1999), pp.1609-1622

source_name: Arabidopsis cue1-1 mutant, ecotype Columbia 0


title: 29-fluD_1


title: 29-WT_2


title: 29-WT_1


title: 28-WT_6

source_name: WT, ecotype Columbia 0


title: 29-fluD_2


title: 28-cue1_1


title: 28-cue1_3


title: 28-cue1_5


title: 28-WT_2


title: 28-WT_4


title: 28-cue1_4


title: 28-WT_5


title: 28-WT_3


title: 24-atpd_3

description: Comparison of Arabidopsis atpd mutant lacking ATP synthase delta subunit versus WT. D. Maiwald et al., Plant Physiol 133 (2003), pp. 191-202

source_name: Arabidopsis atpd mutant, ecotype Wassilevskija, grown on MS medium


title: 24-atpd_4


title: 28-WT_1


title: 24-WT_4

source_name: WT, ecotype Wassilevskija, grown on MS medium


title: 28-cue1_2


title: 24-atpd_2


title: 24-WT_2


title: 24-WT_3


title: 24-WT_1


title: 23-atpc_10

description: Comparison of Arabidopsis atpc1-1 mutant lacking ATP synthase gamma subunit versus WT. C.D. Bosco et al., J Biol Chem 279 (2004), pp. 1060-1069

source_name: Arabidopsis atpc1-1 mutant, ecotype Columbia 0, grown on MS medium


title: 24-atpd_1


title: 23-atpc_7


title: 23-WT_10

source_name: WT, ecotype Columbia 0, grown on MS medium


title: 23-atpc_6


title: 23-atpc_8


title: 23-WT_8


title: 23-atpc_9


title: 23-WT_9


title: 23-WT_3


title: 23-atpc_3


title: 23-atpc_2


title: 23-WT_4


title: 23-WT_7


title: 23-WT_6


title: 23-atpc_5


title: 23-WT_5


title: 22-WT_6

description: Comparison of the Arabidopsis atc6 mutant lacking cytochrom c6 protein versus WT. M. Weigel et al., Trends Plant Sci 8 (2003), pp. 513-517


title: 22-atc6_6

source_name: Arabidopsis atc6 mutant, ecotype Columbia 0, grown on MS medium							g


title: 22-atc6_5


title: 22-atc6_3


title: 23-WT_2


title: 23-WT_1


title: 22-atc6_4


title: 22-WT_3


title: 22-WT_5


title: 22-WT_2


title: 22-WT_4


title: 2-1week_3

description: Comparison of 1 week old plants versus 4 weeks old plants.

source_name: WT, ecotype Columbia 0, 1 week old


title: 2-1week_4


title: 2-1week_2


title: 2-4weeks_4

source_name: WT, ecotype Columbia 0, 4 weeks old


title: 2-4weeks_2


title: 23-atpc_4


title: 22-atc6_1


title: 22-WT_1


title: 21-WT_6

description: Comparison of the Arabidopsis aap6 mutant lacking the amino acid transporter protein AAP6 of xylem parenchyma versus WT. W.N. Fischer et al., Plant J. 29 (2002), pp. 717-731

source_name: WT, ecotype Wassilevskija


title: 21-aap6_5

source_name: Arabidopsis aap6 mutant, ecotype Wassilevskija


title: 23-atpc_1


title: 2-1week_1


title: 2-4weeks_1


title: 2-4weeks_3


title: 21-aap6_3


title: 21-aap6_6


title: 21-WT_5


title: 21-aap6_2


title: 21-WT_4


title: 21-WT_3


title: 21-WT_1


title: 21-aap6_1


title: 20-WT_6

description: Comparison of the Arabidopsis aap3 mutant lacking the amino acid transporter protein AAP3 of roots versus WT. W.N. Fischer et al., Plant J. 29 (2002), pp. 717-731


title: 20-aap3_5

source_name: Arabidopsis aap3 mutant, ecotype Wassilevskija


title: 21-WT_2


title: 20-aap3_6


title: 21-aap6_4


title: 20-aap3_4


title: 20-WT_3


title: 20-aap3_2


title: 20-aap3_3


title: 17-PSI_DCMU_6

description: Comparison of plants grown under PSI-specific light and treated with the electron transport inhibitor DCMU versus plants grown under PSI-specific light without DCMU treatment. T. Pfannschmidt, unpublished

source_name: WT, ecotype C24, grown under PSI-specific light and treated with DCMU


title: 17-PSI_6

source_name: WT, ecotype C24, grown under PSI-specific light


title: 20-WT_1


title: 20-WT_2


title: 20-WT_5


title: 20-WT_4


title: 17-PSI_3


title: 20-aap3_1


title: 17-PSI_DCMU_2


title: 17-PSI_2


title: 17-PSI_DCMU_5


title: 17-PSI_DCMU_4


title: 15-PSII_DCMU_6

description: Comparison of plants grown under PSII-specific light and treated with the electron transport inhibitor DCMU versus plants grown under PSI-specific light without DCMU treatment. T. Pfannschmidt, unpublished

source_name: WT, ecotype C24, grown under PSII-specific light and treated with DCMU


title: 17-PSI_4


title: 17-PSI_DCMU_3


title: 17-PSI_5


title: 17-PSI_1


title: 17-PSI_DCMU_1


title: 15-PSI_6


title: 15-PSII_DCMU_5


title: 22-atc6_2


title: 15-PSI_4


title: 15-PSII_DCMU_4


title: 15-PSI_2


title: 15-PSI_1


title: 15-PSI_5


title: 15-PSII_DCMU_1


title: 15-PSI_3


title: 15-PSII_DCMU_3


title: 14-PSII_DCMU_6

description: Comparison of plants grown under PSII-specific light and treated with the electron transport inhibitor DCMU versus plants grown under PSII-specific light without DCMU treatment. T. Pfannschmidt, unpublished


title: 15-PSII_DCMU_2


title: 14-PSII_5

source_name: WT, ecotype C24, grown under PSII-specific light


title: 14-PSII_6


title: 14-PSII_DCMU_4


title: 14-PSII_DCMU_5


title: 14-PSII_4


title: 14-PSII_3


title: 14-PSII_DCMU_2


title: 14-PSII_DCMU_3


title: 14-PSII_2


title: 1-1h_D_5

description: Comparison of light adapted plants exposed to darkness for 1h versus light adapted plants.

source_name: WT, ecotype Columbia 0, exposure to darkness for 1h


title: 1-LA_6

source_name: WT, ecotype Columbia 0, light adapted


title: 1-LA_4


title: 1-LA_5


title: 14-PSII_1


title: 14-PSII_DCMU_1


title: 1-1h_D_6


title: 1-1h_D_4


title: 1-LA_3


title: 1-1h_D_3


title: 1-LA_1


title: 10-L_1h_6

description: Comparison of plants exposed to light for 1 h after a over night dark period versus over night dark adapted plants.

source_name: WT, ecotype Columbia 0, exposed to light for 1 h after a over night dark period


title: 1-1h_D_1


title: 1-1h_D_2


title: 10-D_5

source_name: WT, ecotype Columbia 0, over night dark adapted


title: 10-D_1


title: 10-D_6


title: 10-D_4


title: 10-L_1h_5


title: 10-L_1h_4


title: 10-D_3


title: 10-L_1h_3


title: 10-L_1h_2


title: 10-D_2


title: 10-L_1h_1


title: 101-WT_6

description: Comparison of the Arabidopsis tpt1 mutant exhibiting a reduction of triose phosphate (TP)-specific transport activities in chloroplasts to below 5%. A. Schneider et al., Plant J 32 (2002), pp. 685-699


title: 101-WT_5


title: 1-LA_2


title: 101-WT_2


title: 101-tpt1_6

source_name: tpt1 mutant, ecotype Wassilevskija


title: 101-tpt1_5


title: 101-tpt1_1


title: 101-WT_1


title: 101-tpt1_2


title: 101-tpt1_4


title: 101-tpt1_3


title: 101-WT_4


title: 99-toc75_6

description: Comparison of the Arabidopsis toc75 mutant exhibiting an impaired protein import across the outer chloroplast envelope vs WT. P. Jarvis, unpublished

source_name: toc75 mutant, ecotype Columbia 0


title: 101-WT_3


title: 99-WT_6

source_name: WT, ecotype Columbia 0


title: 99-toc75_4


title: 99-toc75_5


title: 99-WT_5


title: 99-toc75_2


title: 99-toc75_3


title: 99-WT_4


title: 99-WT_3


title: 99-WT_2


title: 99-toc75_1


title: 99-WT_1


title: 98-WT_6

description: Comparison of the Arabidopsis toc34 mutant exhibiting an impaired protein import across the outer chloroplast envelope vs WT. M. Gutensohn et al., Plant J 23 (2000), pp. 771-783


title: 98-toc34_5

source_name: Arabidopsis toc34 mutant, ecotype Columbia 0


title: 98-toc34_6


title: 98-WT_5


title: 98-toc34_3


title: 98-WT_2


title: 97-toc160_6

description: Comparison of the Arabidopsis toc160 mutant exhibiting an impaired protein import across the outer chloroplast envelope vs WT. P. Jarvis, unpublished

source_name: Arabidopsis toc160 mutant, ecotype Wassilevskija


title: 98-toc34_4


title: 98-WT_4


title: 98-toc34_2


title: 98-WT_1


title: 98-WT_3


title: 98-toc34_1


title: 97-toc160_5


title: 97-WT_4


title: 97-toc160_3


title: 97-toc160_4


title: 97-WT_6


title: 96-toc132_6

description: Comparison of the Arabidopsis toc132 mutant exhibiting an impaired protein import across the outer chloroplast envelope vs WT. P.Jarvis, unpublished

source_name: Arabidopsis toc132 mutant, ecotype Columbia 0


title: 97-toc160_2


title: 97-WT_2

source_name: WT, ecotype Wassilevskija


title: 96-toc132_5


title: 96-WT_5


title: 96-WT_6


title: 97-toc160_1


title: 96-toc132_2


title: 96-WT_4


title: 96-toc132_3


title: 97-WT_3


title: 96-WT_3


title: 96-WT_1


title: 97-WT_1


title: 95-WT_4

description: Comparison of the Arabidopsis toc120 mutant exhibiting an impaired protein import across the outer chloroplast envelope vs WT. P. Jarvis, unpublished


title: 95-WT_6


title: 96-WT_2


title: 95-toc120_4

source_name: Arabidopsis toc120 mutant, ecotype Columbia 0


title: 96-toc132_1


title: 96-toc132_4


title: 95-toc120_6


title: 95-toc120_3


title: 95-WT_5


title: 95-toc120_1


title: 95-WT_3


title: 95-WT_1


title: 95-WT_2


title: 94-tic40_4

description: Comparison of the Arabidopsis tic40 mutant exhibiting an impaired protein import across the inner chloroplast envelope vs WT. L. Heins et al., EMBO J 21 (2002), pp. 2616-2625

source_name: Arabidopsis tic40 mutant, ecotype Columbia 0


title: 94-WT_4


title: 94-WT_3


title: 94-tic40_2


title: 94-tic40_3


title: 95-toc120_5


title: 94-WT_2


title: 94-WT_1


title: 93-tatA_4

description: Comparison of the Arabidopsis tata antisense line that is defective in the ion gradient dependent twin-arginine translocation (TAT) pathway for uptake from the stroma into, or passage through, the thylakoid membrane in the chloroplasts of higher plants versus WT. J. Marques, unpublished

source_name: Arabidopsis tata mutant, ecotype Columbia 0


title: 94-tic40_1


title: 93-WT_4


title: 93-WT_3


title: 95-toc120_2


title: 93-WT_1


title: 92-WT_12

description: Comparison of the Arabidopsis sut2 mutant lacking plasma-membrane sucrose sensor/transporter versus WT. L. Barker et al., Plant Cell 12 (2000), pp. 1153-64


title: 92-WT_11


title: 93-WT_2


title: 93-tatA_2


title: 92-sut2_11

source_name: Arabidopsis sut2 mutant, ecotype Wassilevskija


title: 93-tatA_3


title: 92-sut2_10


title: 93-tatA_1


title: 92-sut2_12


title: 92-sut2_9


title: 92-WT_10


title: 92-sut2_8


title: 92-WT_7


title: 92-WT_9


title: 92-WT_8


title: 97-WT_5


title: 92-sut2_7


title: 92-sut2_6


title: 92-sut2_5


title: 92-sut2_4


title: 92-WT_6


title: 92-WT_5


title: 92-WT_4


title: 92-WT_3


title: 92-sut2_3


title: 92-sut2_2


title: 91-stem_6

description: Comparison of stem tissue versus leaf tissue.

source_name: WT stem material, ecotype Columbia 0


title: Data 2, Vbeta5

city: La Jolla

first: Nicholas

middle: Robert John

last: Gascoigne

address: 10550 North Torrey Pines Road

department: Immunology

institute: The Scripps Research Institute

description: Normalized raw data

source_name: double positive thymocytes


title: 92-WT_1


title: Data 1, control

description: Normalized raw data


title: 91-leaf_6

source_name: WT leaves, ecotype Columbia 0


title: Data 1, Vbeta5

description: Normalized raw data


title: Data 2, overnight control

description: Normalized raw data


title: 91-leaf_5


title: Data 1, overnight control

description: Normalized raw data


title: 92-WT_2


title: 91-leaf_4


title: 91-stem_5


title: 91-stem_4


title: Data 1, Valpha2

description: Normalized raw data


title: 91-stem_3


title: 91-leaf_3


title: lec1 Mid-Maturation Seed 2 (AtGenome1)

first: Bob

last: Goldberg

address: 610 Charles E Young Drive East

department: Molecular, Cell and Developmental Biology

institute: University of California, Los Angeles

description: Microarray Methods: Total RNA was extracted using the Hot Borate Method (ref.).  Fifteen micrograms of biotinylated complementary RNA (cRNA) was prepared as described (Le et. al., 2004, PNAS).  cRNA was subsequently hybridized to Affymetrix ATH1 Arabidopsis GeneChips.  The scanned array images were analyzed using Affymetrix Microarray Suite 4.0 (MAS 4.0) with a global scaling intensity set at 2500.

source_name: Genotype: Ws-0, lec1; Stage: Mid-Maturation Seed; Technical Replica: 2 of 2


title: WT 24-Hr Seed 2 (AtGenome1)

source_name: Genotype: Ws-0, Wild Type; Stage: 24-Hr fertilized seed; Technical Replica: 2 of 2


title: 91-leaf_2


title: 92-sut2_1


title: 91-stem_2


title: WT 24-Hr Seed 1 (AtGenome1)

source_name: Genotype: Ws-0, Wild Type; Stage: 24-Hr fertilized seed; Technical Replica: 1 of 2


title: 91-leaf_1


title: lec1 Mid-Maturation Seed 1 (AtGenome1)

source_name: Genotype: Ws-0, lec1; Stage: Mid-Maturation Seed; Technical Replica: 1 of 2


title: 90-root_4

description: Comparison of root tissue versus leaf tissue.

source_name: WT root material, ecotype Columbia 0


title: 90-leaf_4


title: 90-root_3


title: mouse liver D3

city: Potomac Falls

first: Agnieszka

middle: Maria

last: Lichanska

state: VA

institute: Tessarae, LLC

description:
liver from a 42 day old male mouse, GHR-/- mouse was dissected out. Total RNA was extracted using an Ambion RNaqueous RNA extraction kit. Targets were produced using modified Affymetrix procedure from 5ug of total RNA. 3 biological replicates were analysed per each group of animals.Sample also known as D3.
Keywords = Mouse, Growth hormone receptor, identification of signalling pathways

source_name: liver


title: lec1 24-Hr Seed 2 (AtGenome1)

source_name: Genotype: Ws-0, lec1; Stage: 24-Hr fertilized seed; Technical Replica: 2 of 2


title: mouse liver C2

description:
liver from a 42 day old male mouse, mutant 391 was dissected out. Total RNA was extracted using an Ambion RNaqueous RNA extraction kit. Targets were produced using modified Affymetrix procedure from 5ug of total RNA. 3 biological replicates were analysed per each group of animals.Sample also known as C2.
Keywords = Mouse, Growth hormone receptor, identification of signalling pathways


title: 90-leaf_3


title: mouse liver D1

description:
liver from a 42 day old male mouse, GHR-/- mouse was dissected out. Total RNA was extracted using an Ambion RNaqueous RNA extraction kit. Targets were produced using modified Affymetrix procedure from 5ug of total RNA. 3 biological replicates were analysed per each group of animals.Sample also known as D1.
Keywords = Mouse, Growth hormone receptor, identification of signalling pathways


title: 90-root_2


title: 91-stem_1


title: mouse liver C3

description:
liver from a 42 day old male mouse, mutant 391 was dissected out. Total RNA was extracted using an Ambion RNaqueous RNA extraction kit. Targets were produced using modified Affymetrix procedure from 5ug of total RNA. 3 biological replicates were analysed per each group of animals.Sample also known as C3.
Keywords = Mouse, Growth hormone receptor, identification of signalling pathways


title: lec1 24-Hr Seed 1 (AtGenome1)

source_name: Genotype: Ws-0, lec1; Stage: 24-Hr fertilized seed; Technical Replica: 1 of 2


title: 90-leaf_2


title: WT Late-Maturation Seed 2 (AtGenome1)

source_name: Genotype: Ws-0, Wild Type; Stage: Late-Maturation Seed; Technical Replica: 2 of 2


title: 90-root_1


title: Data 2, control

description: Normalized raw data


title: mouse liver B3

description:
liver from a 42 day old male mouse, wild type was dissected out. Total RNA was extracted using an Ambion RNaqueous RNA extraction kit. Targets were produced using modified Affymetrix procedure from 5ug of total RNA. 3 biological replicates were analysed per each group of animals.Sample also known as B3.
Keywords = Mouse, Growth hormone receptor, identification of signalling pathways


title: mouse liver C1

description:
liver from a 42 day old male mouse, mutant 391 was dissected out. Total RNA was extracted using an Ambion RNaqueous RNA extraction kit. Targets were produced using modified Affymetrix procedure from 5ug of total RNA. 3 biological replicates were analysed per each group of animals.Sample also known as C1.
Keywords = Mouse, Growth hormone receptor, identification of signalling pathways


title: 90-leaf_1


title: mouse liver B2

description:
liver from a 42 day old male mouse, wild type was dissected out. Total RNA was extracted using an Ambion RNaqueous RNA extraction kit. Targets were produced using modified Affymetrix procedure from 5ug of total RNA. 3 biological replicates were analysed per each group of animals.Sample also known as B2.
Keywords = Mouse, Growth hormone receptor, identification of signalling pathways


title: mouse liver D2

description:
liver from a 42 day old male mouse, GHR-/- mouse was dissected out. Total RNA was extracted using an Ambion RNaqueous RNA extraction kit. Targets were produced using modified Affymetrix procedure from 5ug of total RNA. 3 biological replicates were analysed per each group of animals.Sample also known as D2.
Keywords = Mouse, Growth hormone receptor, identification of signalling pathways


title: WT Late-Maturation Seed 1 (AtGenome1)

source_name: Genotype: Ws-0, Wild Type; Stage: Late-Maturation Seed; Technical Replica: 1 of 2


title: WT Mid-Maturation Seed 2 (AtGenome1)

source_name: Genotype: Ws-0, Wild Type; Stage: Mid-Maturation Seed; Technical Replica: 2 of 2


title: Plate vs. Nail:  6 Week Sham

city: Charlotte

first: Ralph

middle: A.

last: Meyer

state: NC

department: Orthopaedic Research Laboratory

institute: Carolinas Medical Center

description:
This is from a study of femoral fracture healing in female rats 16 weeks old at fracture to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is from the group receiving sham surgery (no fracture, no plate and no nail) and collected 6 weeks after surgery.  Each sample is a pool of RNA from three rats.  The middle third of the femur was collected with the cortical bone, fracture callus, and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur

source_name: Sprague-Dawley rat femoral diaphysis


title: mouse liver B1

description:
liver from a 42 day old male mouse,wild type was dissected out. Total RNA was extracted using an Ambion RNaqueous RNA extraction kit. Targets were produced using modified Affymetrix procedure from 5ug of total RNA. 3 biological replicates were analysed per each group of animals.Sample also known as B1.
Keywords = Mouse, Growth hormone receptor, identification of signalling pathways


title: mouse liver A2

description:
liver from a 42 day old male mouse, mutant 569 wasdissected out. Total RNA was extracted using an Ambion RNaqueous RNA extraction kit. Targets were produced using modified Affymetrix procedure from 5ug of total RNA. 3 biological replicates were analysed per each group of animals.Sample also known as A2.
Keywords = Mouse, Growth hormone receptor, identification of signalling pathways


title: mouse liver A1

description:
liver from a 42 day old male mouse, mutant 569 was dissected out. Total RNA was extracted using an Ambion RNaqueous RNA extraction kit. Targets were produced using modified Affymetrix procedure from 5ug of total RNA. 3 biological replicates were analysed per each group of animals.Sample also known as A1.
Keywords = Mouse, Growth hormone receptor, identification of signalling pathways


title: Plate vs. Nail:  4 Week Sham

description:
This is from a study of femoral fracture healing in female rats 16 weeks old at fracture to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is from the group receiving sham surgery (no fracture, no plate and no nail) and collected 4 weeks after surgery.  Each sample is a pool of RNA from three rats.  The middle third of the femur was collected with the cortical bone, fracture callus, and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur


title: WT Mid-Maturation Seed 1 (AtGenome1)

source_name: Genotype: Ws-0, Wild Type; Stage: Mid-Maturation Seed; Technical Replica: 1 of 2


title: mouse liver A3

description:
liver from a 42 day old male mouse, mutant 569 was dissected out. Total RNA was extracted using an Ambion RNaqueous RNA extraction kit. Targets were produced using modified Affymetrix procedure from 5ug of total RNA. 3 biological replicates were analysed per each group of animals.Sample also known as A3.
Keywords = Mouse, Growth hormone receptor, identification of signalling pathways


title: Plate vs. Nail:  2 Week Sham

description:
This is from a study of femoral fracture healing in female rats 16 weeks old at fracture to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is from the group receiving sham surgery (no fracture, no plate and no nail) and collected 2 weeks after surgery.  Each sample is a pool of RNA from three rats.  The middle third of the femur was collected with the cortical bone, fracture callus, and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur


title: Data 2, Valpha2

description: Normalized raw data


title: Plate vs. Nail:  4 Week Plate

description:
This is from a study of femoral fracture healing in female rats 16 weeks old at fracture to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is from the group repaired with a plate and screws (rigid fixation) collected 4 weeks after fracture.  Each sample is a pool of RNA from three rats.  The middle third of the femur was collected with the cortical bone, fracture callus, and marrow elements.  Mid-diaphyseal, simple, transverse fractures were induced by a Gigli saw.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur


title: Plate vs. Nail:  1 Week Sham

description:
This is from a study of femoral fracture healing in female rats 16 weeks old at fracture to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is from the group receiving sham surgery (no fracture, no plate and no nail) collected 1 week after surgery.  Each sample is a pool of RNA from three rats.  The middle third of the femur was collected with the cortical bone, fracture callus, and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur


title: Plate vs. Nail:  2 Week Plate

description:
This is from a study of femoral fracture healing in female rats 16 weeks old at fracture to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is from the group repaired with a plate and screws (rigid fixation) collected 2 weeks after fracture.  Each sample is a pool of RNA from three rats.  The middle third of the femur was collected with the cortical bone, fracture callus, and marrow elements.  Mid-diaphyseal, simple, transverse fractures were induced by a Gigli saw.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur


title: Plate vs. Nail:  3 Day Plate

description:
This is from a study of femoral fracture healing in female rats 16 weeks old at fracture to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is from the group repaired with a plate and screws (rigid fixation) collected 3 days after fracture.  Each sample is a pool of RNA from three rats.  The middle third of the femur was collected with the cortical bone, fracture callus, and marrow elements.  Mid-diaphyseal, simple, transverse fractures were induced by a Gigli saw.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur


title: Plate vs. Nail:  1 Day Plate

description:
This is from a study of femoral fracture healing in female rats 16 weeks old at fracture to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is from the group repaired with a plate and screws(rigid fixation) collected 1 day after fracture.  Each sample is a pool of RNA from three rats.  The middle third of the femur was collected with the cortical bone, fracture callus, and marrow elements.  Mid-diaphyseal, simple, transverse fractures were induced by a Gigli saw.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur


title: Plate vs. Nail:  6 Week Plate

description:
This is from a study of femoral fracture healing in female rats 16 weeks old at fracture to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is from the group repaired with a plate and screws (rigid fixation) collected 6 weeks after fracture.  Each sample is a pool of RNA from three rats.  The middle third of the femur was collected with the cortical bone, fracture callus, and marrow elements.  Mid-diaphyseal, simple, transverse fractures were induced by a Gigli saw.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur


title: Plate vs. Nail:  1 Day Sham

description:
This is from a study of femoral fracture healing in female rats 16 weeks old at fracture to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is from the group receiving sham surgery (no fracture, no plate and no nail) collected 1 day after surgery.  Each sample is a pool of RNA from three rats.  The middle third of the femur was collected with the cortical bone, fracture callus, and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur


title: Plate vs. Nail:  3 Day Sham

description:
This is from a study of femoral fracture healing in female rats 16 weeks old at fracture to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is from the group receiving sham surgery (no fracture, no plate and no nail) collected 3 days after surgery.  Each sample is a pool of RNA from three rats.  The middle third of the femur was collected with the cortical bone, fracture callus, and marrow elements.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur


title: Plate vs. Nail:  6 Week Nail

description:
This is from a study of femoral fracture healing in female rats 16 weeks old at fracture to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is from the nail (intramedullary rod) group collected 6 weeks after fracture.  Each sample is a pool of RNA from three rats.  The middle third of the femur was collected with the cortical bone, fracture callus, and marrow elements.  Mid-diaphyseal, simple, transverse fractures were induced by a Gigli saw.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur


title: Plate vs. Nail:  1 Week Plate

description:
This is from a study of femoral fracture healing in female rats 16 weeks old at fracture to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is from the group repaired with a plate and screws (rigid fixation) collected 1 week after fracture.  Each sample is a pool of RNA from three rats.  The middle third of the femur was collected with the cortical bone, fracture callus, and marrow elements.  Mid-diaphyseal, simple, transverse fractures were induced by a Gigli saw.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur


title: Plate vs. Nail:  4 Week Nail

description:
This is from a study of femoral fracture healing in female rats 16 weeks old at fracture to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is from the nail (intramedullary rod) group collected 4 weeks after fracture.  Each sample is a pool of RNA from three rats.  The middle third of the femur was collected with the cortical bone, fracture callus, and marrow elements.  Mid-diaphyseal, simple, transverse fractures were induced by a Gigli saw.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur


title: Plate vs. Nail:  2 Week Nail

description:
This is from a study of femoral fracture healing in female rats 16 weeks old at fracture to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is from the nail (intramedullary rod) group collected 2 weeks after fracture.  Each sample is a pool of RNA from three rats.  The middle third of the femur was collected with the cortical bone, fracture callus, and marrow elements.  Mid-diaphyseal, simple, transverse fractures were induced by a Gigli saw.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur


title: Plate vs. Nail:  1 Week Nail

description:
This is from a study of rat femoral fracture healing in rats 16 weeks old at fracture to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is from the nail (intramedullary rod) group collected 1 week after fracture.  Each sample is a pool of RNA from three rats.  The middle third of the femur was collected with the cortical bone, fracture callus, and marrow elements.  Mid-diaphyseal, simple, transverse fractures were induced by a Gigli saw.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur


title: Plate vs. Nail:  1 Day Nail

description:
This is from a study of rat femoral fracture healing in 16 week old rats to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is the nail (intramedullary rod) collected 1 day after fracture.  Each sample is the pool of RNA from three rats.  The middle third of the femur was collected with the cortical bone, fracture callus and marrow elements.  Mid-diaphyseal, simple, transverse fractures were induced by a Gigli saw.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur


title: Plate vs. Nail:  3 Day Nail

description:
This is from a study of rat femoral fracture healing in 16-week-old rats to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is from the nail (intramedullary rod) group collected 3 days after fracture.  Each sample is a pool of RNA from three rats.  The middle third of the femur was collected with the cortical bone, fracture callus, and marrow elements.  Mid-diaphyseal, simple, transverse fractures were induced by a Gigli saw.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur


title: IFC 03

status: Public on Dec 31 2004

city: Stony Brook

first: Ira

last: Rampil

state: NY

institute: University at Stony Brook

description:
Fear conditioning in rats leads to long term memory (LTM) formation. A central substrate for this type of LTM is the basolateral amygdala. We sought expression changes specific to LTM at 6 h following conditioning. The effect of isoflurane, an effective amnestic agent, was also assessed.
Keywords = Rampil
Keywords = anesthesia
Keywords = memory
Keywords = amygdala
Lot batch = rat 29

source_name: basolateral amygdala


title: IFC 05

description:
Fear conditioning in rats leads to long term memory (LTM) formation. A central substrate for this type of LTM is the basolateral amygdala. We sought expression changes specific to LTM at 6 h following conditioning. The effect of isoflurane, an effective amnestic agent, was also assessed.
Keywords = Rampil
Keywords = anesthesia
Keywords = memory
Keywords = amygdala
Lot batch = rat 32


title: IFC 02

description:
Fear conditioning in rats leads to long term memory (LTM) formation. A central substrate for this type of LTM is the basolateral amygdala. We sought expression changes specific to LTM at 6 h following conditioning. The effect of isoflurane, an effective amnestic agent, was also assessed.
Keywords = Rampil
Keywords = anesthesia
Keywords = memory
Keywords = amygdala
Lot batch = rat 26


title: IFC 01

description:
Fear conditioning in rats leads to long term memory (LTM) formation. A central substrate for this type of LTM is the basolateral amygdala. We sought expression changes specific to LTM at 6 h following conditioning. The effect of isoflurane, an effective amnestic agent, was also assessed.
Keywords = Rampil
Keywords = anesthesia
Keywords = memory
Keywords = amygdala
Lot batch = rat 22


title: RAW LPS 1

city: Pittsburgh

first: Milcarek

last: Christine

address: 200 Lothrop St. BST E1009

institute: University Of Pittsburgh

description:
RAW macrophages treated with 100 ng/ml LPS for 18 hours.  RNA was isolated using Ultraspec RNA isolation system.  Hybridization and measurements were performed at the Univeristy of Pittsburgh Genomics and Proteomics Core Facilities.  3 replicates of untreated were compare to 3 replicates each of 100 ng/ml LPS stimulation for 18 hours and CstF-64 constituitive over-expression.
Keywords = RAW 264.7 macrophage

source_name: RAW 264.7 macrophage cell line


title: RAW Untreated 3

description:
RAW macrophage Untreated Control.  RNA was isolated using Ultraspec RNA isolation system.  Hybridization and measurements were performed at the Univeristy of Pittsburgh Genomics and Proteomics Core Facilities.  3 replicates of untreated were compare to 3 replicates each of 100 ng/ml LPS stimulation for 18 hours and CstF-64 constituitive over-expression.
Keywords = RAW 264.7 macrophage


title: Unrelated Female 1 (F3)

city: Delhi

first: Srinivasan

last: Ramachandran

email: ramu@igib.res.in, ramucbt@yahoo.com

state: Delhi

address: Mall Road (Near Delhi University Campu)

department: Functional Genomics Unit

country: India

institute: Institute of Genomics and Integrative Biology

description:
Blood was collected in ACD containing vacutainers. RBCs were lysed using lysis
buffer, and WBCs were subsequently pelleted. Total RNA was extracted from this
sample using EZ-RNA isolation kit (Biological Industries, Israel). Targets were
produced using standard Affymetrix procedures from 8 microgram of total RNA.

source_name: whole blood


title: RAW LPS 3


title: RAW Untreated 2


title: RAW Untreated 1


title: Plate vs. Nail:  No Fracture

description:
This is from a study of rat femoral fracture healing in 16 week old rats to compare intramedullary nailing, screw and plate fixation, and sham surgery.  This sample is the no fracture, 0 time control.  Each sample is the pool of RNA from three rats.  The middle third of the femor was collected with the cortical bone, fracture callus and marrow elements.  Mid-diaphyseal, simple, transverse fractures were induced by a Gigli saw.
Keywords = rat
Keywords = fracture
Keywords = plate
Keywords = nail
Keywords = time
Keywords = femur


title: RAW CstF-64 3

description:
RAW macrophages constituitively over-expressing CstF-64.  RNA was isolated using Ultraspec RNA isolation system.  Hybridization and measurements were performed at the Univeristy of Pittsburgh Genomics and Proteomics Core Facilities.  3 replicates of untreated were compare to 3 replicates each of 100 ng/ml LPS stimulation for 18 hours and CstF-64 constituitive over-expression.
Keywords = RAW 264.7 macrophage


title: RAW CstF-64 2


title: IFC 04

description:
Fear conditioning in rats leads to long term memory (LTM) formation. A central substrate for this type of LTM is the basolateral amygdala. We sought expression changes specific to LTM at 6 h following conditioning. The effect of isoflurane, an effective amnestic agent, was also assessed.
Keywords = Rampil
Keywords = anesthesia
Keywords = memory
Keywords = amygdala
Lot batch = rat 30


title: RAW LPS 2


title: FC 03

description:
Fear conditioning in rats leads to long term memory (LTM) formation. A central substrate for this type of LTM is the basolateral amygdala. We sought expression changes specific to LTM at 6 h following conditioning. The effect of isoflurane, an effective amnestic agent, was also assessed.
Keywords = Rampil
Keywords = anesthesia
Keywords = memory
Keywords = amygdala
Lot batch = rat 27


title: RAW CstF-64 1


title: FC 04

description:
Fear conditioning in rats leads to long term memory (LTM) formation. A central substrate for this type of LTM is the basolateral amygdala. We sought expression changes specific to LTM at 6 h following conditioning. The effect of isoflurane, an effective amnestic agent, was also assessed.
Keywords = Rampil
Keywords = anesthesia
Keywords = memory
Keywords = amygdala
Lot batch = rat 28


title: FC 01

description:
Fear conditioning in rats leads to long term memory (LTM) formation. A central substrate for this type of LTM is the basolateral amygdala. We sought expression changes specific to LTM at 6 h following conditioning. The effect of isoflurane, an effective amnestic agent, was also assessed.
Keywords = Rampil
Keywords = anesthesia
Keywords = memory
Keywords = amygdala
Lot batch = rat 24


title: pain 02

description:
Fear conditioning in rats leads to long term memory (LTM) formation. A central substrate for this type of LTM is the basolateral amygdala. We sought expression changes specific to LTM at 6 h following conditioning. The effect of isoflurane, an effective amnestic agent, was also assessed.
Keywords = Rampil
Keywords = anesthesia
Keywords = memory
Keywords = amygdala
Lot batch = rat 10


title: pain 04

description:
Fear conditioning in rats leads to long term memory (LTM) formation. A central substrate for this type of LTM is the basolateral amygdala. We sought expression changes specific to LTM at 6 h following conditioning. The effect of isoflurane, an effective amnestic agent, was also assessed.
Keywords = Rampil
Keywords = anesthesia
Keywords = memory
Keywords = amygdala
Lot batch = rat 12


title: pain 05

description:
Fear conditioning in rats leads to long term memory (LTM) formation. A central substrate for this type of LTM is the basolateral amygdala. We sought expression changes specific to LTM at 6 h following conditioning. The effect of isoflurane, an effective amnestic agent, was also assessed.
Keywords = Rampil
Keywords = anesthesia
Keywords = memory
Keywords = amygdala
Lot batch = rat 13


title: FC 02

description:
Fear conditioning in rats leads to long term memory (LTM) formation. A central substrate for this type of LTM is the basolateral amygdala. We sought expression changes specific to LTM at 6 h following conditioning. The effect of isoflurane, an effective amnestic agent, was also assessed.
Keywords = Rampil
Keywords = anesthesia
Keywords = memory
Keywords = amygdala
Lot batch = rat 25


title: FC 05

description:
Fear conditioning in rats leads to long term memory (LTM) formation. A central substrate for this type of LTM is the basolateral amygdala. We sought expression changes specific to LTM at 6 h following conditioning. The effect of isoflurane, an effective amnestic agent, was also assessed.
Keywords = Rampil
Keywords = anesthesia
Keywords = memory
Keywords = amygdala
Lot batch = rat 31


title: pain 01

description:
Fear conditioning in rats leads to long term memory (LTM) formation. A central substrate for this type of LTM is the basolateral amygdala. We sought expression changes specific to LTM at 6 h following conditioning. The effect of isoflurane, an effective amnestic agent, was also assessed.
Keywords = Rampil
Keywords = anesthesia
Keywords = memory
Keywords = amygdala
Lot batch = rat 9


title: pain 03

description:
Fear conditioning in rats leads to long term memory (LTM) formation. A central substrate for this type of LTM is the basolateral amygdala. We sought expression changes specific to LTM at 6 h following conditioning. The effect of isoflurane, an effective amnestic agent, was also assessed.
Keywords = Rampil
Keywords = anesthesia
Keywords = memory
Keywords = amygdala
Lot batch = rat 11


title: array 9 minus E

city: Aberdeen

first: Janice

middle: E

last: Drew

state: Scotland

address: Greenburn Road

institute: Rowett Research Institute

description: Clontech Atlas Stress array

source_name: rat distal colon


title: array 10 minus E

description: Clontech Atlas Stress array


title: array 8 minus E

description: Clontech Atlas Stress array


title: array 6 minus E

description: Clontech Atlas Stress array


title: array 7 minus E

description: Clontech Atlas Stress array


title: array 2 plus E

description: Clontech Atlas Stress array


title: array 5 plus E

description: Clontech Atlas Stress array


title: nrg-1

city: Berne 9

first: Martin

last: Flück

state: Bern

address: Bühlstrase 26

department: Department of Anatomy

country: Switzerland

institute: University of Berne

description: ventricular cardiocytes from adult rats cultured under serum free conditions. 24 hours stimulated with neuregulin-1 beta

source_name: primary adult rat cardiocytes


title: nrg-5


title: array 3 plus E

description: Clontech Atlas Stress array


title: nrg-6


title: nrg-4


title: CTL-6

description: ventricular cardiocytes from adult rats cultured under serum free conditions.


title: CTL-2


title: array 4 plus E

description: Clontech Atlas Stress array


title: nrg-3


title: array 1 plus E

description: Clontech Atlas Stress array


title: CTL-4


title: CTL-5


title: nrg-2


title: CTL-3


title: CTL-1


title: Chlamydomonas suppressor (mcd2-1) versus mcd1-2 mutant, sample 3

city: Kenosha

first: David

middle: C

last: Higgs

state: WI

address: 900 Wood Rd.

department: Biological Sciences

institute: University of Wisconsin-Parkside

description:
Chlamydomonas photosynthetic suppressor (mcd2-1) versus nonphotosynthetic mutant (mcd1-2), sample number 3.
Keywords = photosynthetic
Keywords = petD mutant
Keywords = chloroplast

source_name: photosynthetic suppressor (mcd2-1) cells, total RNA

source_name: nonphotosynthetic mutant (mcd1-2), total RNA


title: Chlamydomonas suppressor (mcd2-1) versus mcd1-2 mutant, sample 2

description:
Chlamydomonas photosynthetic suppressor (mcd2-1) versus nonphotosynthetic mutant (mcd1-2), sample number 2.
Keywords = photosynthetic
Keywords = petD mutant
Keywords = chloroplast


title: Control sample 19 weeks

city: Helsinki

first: Niklas

last: Pakkasjärvi

address: Haartmaninkatu 8

department: Dept. of Molecular Medicine

country: Finland

institute: National Public Health Institute

description: RNA isolated from spinal cord of human fetus aborted due to causes not related to Lethal Congenital Contracture Syndrome

source_name: spinal cord


title: LCCS sample 23 weeks

description: RNA isolated from spinal cord of human fetus suffering from Lethal Congenital Contracture Syndrome


title: Chlamydomonas suppressor (mcd2-1) versus mcd1-2 mutant, sample 1

description:
Chlamydomonas photosynthetic suppressor (mcd2-1) versus nonphotosynthetic mutant (mcd1-2), sample number 1.
Keywords = photosynthetic
Keywords = petD mutant
Keywords = chloroplast


title: Chlamydomonas mutant (mcd1-2) versus WT, sample 2

description:
Chlamydomonas nonphotosynthetic mutant (mcd1-2) versus wild-type (P17), sample number 2.
Keywords = photosynthetic
Keywords = petD mutant
Keywords = chloroplast

source_name: mcd1-2 mutant, total RNA

source_name: wild-type cells (P17), total RNA


title: LCCS sample 20 weeks


title: Control sample 23 weeks


title: Chlamydomonas mutant (mcd1-2) versus WT, sample 3

description:
Chlamydomonas nonphotosynthetic mutant (mcd1-2) versus wild-type (P17), sample number 3.
Keywords = photosynthetic
Keywords = petD mutant
Keywords = chloroplast


title: FHA 16hrs, aIW09060.gpr

status: Public on Apr 09 2005

city: Canberra

first: Andrew

last: Spriggs

state: ACT

address: GPO Box 1600

department: Bioinformatics Group

country: Australia

institute: CSIRO Plant Industry

description:
Compare FHA to WT (Ler) under long days (12days)
Biological Replicate: 1, Technical Replicate: 1, Dye Swapped: true
Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
Keywords = flowering, growth and development, gene structure and expression

source_name: WT

source_name: FHA


title: Chlamydomonas mutant (mcd1-1) versus WT, sample 3

description:
Chlamydomonas nonphotosynthetic mutant (mcd1-1) versus wild-type (P17), sample number 3.
Keywords = photosynthetic
Keywords = petD mutant
Keywords = chloroplast

source_name: mcd1-1 mutant, total RNA


title: LCCS sample 18 weeks


title: Chlamydomonas mutant (mcd1-2) versus WT, sample 1

description:
Chlamydomonas nonphotosynthetic mutant (mcd1-2) versus wild-type (P17), sample number 1.
Keywords = photosynthetic
Keywords = petD mutant
Keywords = chloroplast


title: Chlamydomonas mutant (mcd1-1) versus WT, sample 2

description:
Chlamydomonas nonphotosynthetic mutant (mcd1-1) versus wild-type (P17), sample number 2.
Keywords = photosynthetic
Keywords = petD mutant
Keywords = chloroplast


title: mcd1-1 mutant versus WT, sample 1

description:
Chlamydomonas nonphotosynthetic mutant (mcd1-1) versus wild-type (P17), sample number 1.
Keywords = photosynthetic
Keywords = petD mutant
Keywords = chloroplast

source_name: nonphotosynthetic mcd1-1 mutant total RNA

source_name: wild-type (P17) total RNA


title: LL2-Cy5+LL14-Cy3 (expt 2, dye swap)

status: Public on Dec 29 2004

city: Nagoya

first: Masahiro

last: Ishiura

state: Aichi

address: Furo-cho, Chikusa-ku

department: Gene Center

country: Japan

institute: Nagoya University

description:
Strain and culture conditions.  We grew wild-type T. elongatus (Yamaoka et al., Plant Cell Physiol. 19, 943-954) at 50oC under constant light from white fluorescent lamps at 38 micromol m-2 sec-1 (hereafter called LL conditions) in BG-11 liquid medium (Rippka et al., J. Gen. Microbiol. 111, 1-61) with bubbling of air containing 5% (v/v) CO2. We subjected the cells to 12 h of darkness to synchronize the circadian clock, and transferred them back to LL. We collected cells for RNA isolation at 2 h (LL2) and 14 h (LL14) after the transfer.
Microarray experiments.  We isolated total RNAs from two independent cultures by the hot-phenol method (Kucho et al., Genes Genet. Syst. 79, 189-197) and purified them using the SV total RNA isolation system (Promega, WI, USA). We used a mixture of the total RNAs from the two cultures for labeling reactions. We synthesized fluorescence-labeled cDNA by direct incorporation of Cy3-dUTP or Cy5-dUTP (Amersham Bioscience, NJ, USA) during random-primed reverse transcription, using 5.9 microgram total RNA and an RNA fluorescence labeling core kit (M-MLV version 2.0, TaKaRa, Japan). We prehybridized the microarray for 1 h at 42oC in a solution containing 5 X SSC (1 X SSC is 0.15 M NaCl, 0.015 M sodium citrate), 0.1% sodium lauryl sulfate (SDS), and 10 mg/ml bovine serum albumin. We washed the microarray at room temperature in distilled water 3 times for 1 min, rinsed it in 2-propanol, and dried it by centrifugation at 150 X g for 2 min. We performed hybridization for 16 h at 42oC in 12-mL solution containing 5 X SSC, 0.1% SDS, 30% formamide, and heat-denatured labeled cDNA. We then washed the microarray at room temperature with 2 X SSC containing 0.1% SDS for 4 min, with 0.1 X SSC containing 0.1% SDS for 4 min, and 3 times with 0.1 X SSC for 1 min. We dried the microarray by centrifugation. We obtained fluorescence images of Cy3 and Cy5 dye channels using a GenePix 4000B scanner (Axon Instruments, CA, USA).
Data analysis.  We used GenePix Pro 5.0 software (Axon Instruments) to determine the signal intensity of each spot and its local background. We calculated net signal intensity by subtracting the median signal intensity of all pixels within the local background area from the median signal intensity of all pixels within the spot area. We visually confirmed the correct recognition of all spot areas by the automatic alignment function of the GenePix Pro. We flagged spots and did not use them for data analysis when any of following occurred: (i) the GenePix Pro did not find the spot area automatically, (ii) the net signal intensity was <= 0, (iii) the percentage of saturated pixels in the spot area was >= 25, and (iv) severe noise was present. We normalized biases in signal intensity between the two fluorescent dye channels in a microarray by locally weighted linear regression analysis (lowess normalization) (Yang et al., Nucleic Acids Res. 30, e15) using MIDAS software (http://www.tigr.org/software/tm4/midas.html). For all normalization, we set the smoothing parameter to 0.33.
Keywords = circadian clock
Keywords = thermophilic cyanobacteria

organism: Thermosynechococcus vestitus BP-1

source_name: LL2 (Cy5)


title: LL2-Cy5+LL14-Cy3 (expt 1, dye swap)