title: nl050

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:42, Count:32
Corner- Avg:3958, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:39.602112,SFGene:All
Background:Avg:40.93,Stdev:0.82,Max:42.3,Min:38.5
Noise:Avg:1.20,Stdev:0.03,Max:1.3,Min:1.1
RawQ:1.75
Keywords = ALL
Lot batch =


title: nl046

status: Public on Aug 06 2004

type: RNA

city: Memphis

first: William

middle: E

last: Evans

state: TN

address: 332 N. Lauderdale St.

department: Pharmaceutical Sciences

country: USA

institute: St.Jude Children's Research Hospital

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:59, Count:32
Corner- Avg:4117, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:42.683960,SFGene:All
Background:Avg:38.90,Stdev:0.56,Max:40.7,Min:37.4
Noise:Avg:1.29,Stdev:0.04,Max:1.5,Min:1.2
RawQ:1.74
Keywords = ALL

molecule: total RNA

organism: Homo sapiens

source_name: primary acute lymphoblastic leukemia cells


title: nl063

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:81, Count:32
Corner- Avg:5756, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:32.267799,SFGene:All
Background:Avg:41.99,Stdev:0.51,Max:43.1,Min:40.2
Noise:Avg:1.39,Stdev:0.04,Max:1.5,Min:1.3
RawQ:1.88
Keywords = ALL
Lot batch =


title: nl047

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:189, Count:32
Corner- Avg:9310, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:19.948315,SFGene:All
Background:Avg:42.79,Stdev:0.51,Max:43.8,Min:41.1
Noise:Avg:1.71,Stdev:0.07,Max:2.0,Min:1.5
RawQ:1.98
Keywords = ALL


title: nl057

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:59, Count:32
Corner- Avg:5184, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:35.504620,SFGene:All
Background:Avg:43.46,Stdev:0.82,Max:45.1,Min:41.0
Noise:Avg:1.31,Stdev:0.05,Max:1.5,Min:1.2
RawQ:1.87
Keywords = ALL
Lot batch =


title: nl060

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:45, Count:32
Corner- Avg:4396, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:55.781113,SFGene:All
Background:Avg:38.04,Stdev:0.76,Max:39.4,Min:36.1
Noise:Avg:1.33,Stdev:0.04,Max:1.4,Min:1.2
RawQ:1.77
Keywords = ALL
Lot batch =


title: nl042

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:37, Count:32
Corner- Avg:4275, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:37.794636,SFGene:All
Background:Avg:38.36,Stdev:0.72,Max:39.8,Min:36.3
Noise:Avg:1.30,Stdev:0.04,Max:1.4,Min:1.1
RawQ:1.72
Keywords = ALL
Lot batch =


title: nl053

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:50, Count:32
Corner- Avg:2646, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:58.337646,SFGene:All
Background:Avg:37.26,Stdev:0.64,Max:38.8,Min:35.6
Noise:Avg:1.14,Stdev:0.04,Max:1.2,Min:1.0
RawQ:1.67
Keywords = ALL
Lot batch =


title: nl051

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:160, Count:32
Corner- Avg:8097, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:16.533792,SFGene:All
Background:Avg:66.21,Stdev:1.08,Max:69.0,Min:63.0
Noise:Avg:3.11,Stdev:0.13,Max:3.4,Min:2.7
RawQ:2.82
Keywords = ALL
Lot batch =


title: nl043

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:112, Count:32
Corner- Avg:11588, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:10.903433,SFGene:All
Background:Avg:67.96,Stdev:1.32,Max:72.2,Min:64.5
Noise:Avg:3.27,Stdev:0.16,Max:3.7,Min:2.9
RawQ:3.03
Keywords = ALL
Lot batch =


title: nl035

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:53, Count:32
Corner- Avg:4408, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:43.012459,SFGene:All
Background:Avg:40.18,Stdev:1.07,Max:42.3,Min:37.6
Noise:Avg:1.32,Stdev:0.05,Max:1.5,Min:1.2
RawQ:1.80
Keywords = ALL
Lot batch =


title: nl027

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:64, Count:32
Corner- Avg:4793, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:44.793552,SFGene:All
Background:Avg:36.66,Stdev:0.65,Max:38.3,Min:34.9
Noise:Avg:1.25,Stdev:0.04,Max:1.3,Min:1.1
RawQ:1.75
Keywords = ALL
Lot batch =


title: nl039

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:31, Count:32
Corner- Avg:3896, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:55.617153,SFGene:All
Background:Avg:37.57,Stdev:0.97,Max:39.3,Min:35.2
Noise:Avg:1.27,Stdev:0.04,Max:1.4,Min:1.1
RawQ:1.75
Keywords = ALL
Lot batch =


title: nl028

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:85, Count:32
Corner- Avg:4042, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:30.415363,SFGene:All
Background:Avg:42.08,Stdev:1.27,Max:46.1,Min:38.7
Noise:Avg:1.47,Stdev:0.06,Max:1.7,Min:1.3
RawQ:1.86
Keywords = ALL
Lot batch =


title: nl037

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:51, Count:32
Corner- Avg:4107, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:41.603287,SFGene:All
Background:Avg:47.79,Stdev:1.65,Max:50.6,Min:43.1
Noise:Avg:1.49,Stdev:0.06,Max:1.7,Min:1.3
RawQ:2.07
Keywords = ALL


title: nl031

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:131, Count:32
Corner- Avg:14419, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:12.463017,SFGene:All
Background:Avg:56.17,Stdev:1.38,Max:59.6,Min:52.8
Noise:Avg:2.58,Stdev:0.11,Max:2.9,Min:2.3
RawQ:2.52
Keywords = ALL
Lot batch =


title: nl036

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:128, Count:32
Corner- Avg:4568, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:56.475021,SFGene:All
Background:Avg:39.24,Stdev:0.84,Max:40.8,Min:37.1
Noise:Avg:1.35,Stdev:0.05,Max:1.5,Min:1.2
RawQ:1.82
Keywords = ALL
Lot batch =


title: nl032

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:48, Count:32
Corner- Avg:4796, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:31.842726,SFGene:All
Background:Avg:38.93,Stdev:0.90,Max:41.0,Min:36.7
Noise:Avg:1.36,Stdev:0.06,Max:1.5,Min:1.2
RawQ:1.77
Keywords = ALL
Lot batch =


title: nl040

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:110, Count:32
Corner- Avg:7038, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:30.312765,SFGene:All
Background:Avg:40.88,Stdev:0.60,Max:42.4,Min:39.2
Noise:Avg:1.55,Stdev:0.06,Max:1.8,Min:1.4
RawQ:1.93
Keywords = ALL
Lot batch =


title: nl033

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:50, Count:32
Corner- Avg:3403, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:49.576260,SFGene:All
Background:Avg:39.86,Stdev:1.80,Max:45.2,Min:36.8
Noise:Avg:1.32,Stdev:0.06,Max:1.5,Min:1.1
RawQ:1.84
Keywords = ALL
Lot batch =


title: nl034

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:63, Count:32
Corner- Avg:4195, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:45.061314,SFGene:All
Background:Avg:39.18,Stdev:2.43,Max:44.5,Min:34.8
Noise:Avg:1.33,Stdev:0.08,Max:1.5,Min:1.1
RawQ:1.77
Keywords = ALL
Lot batch =


title: nl030

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:40, Count:32
Corner- Avg:4233, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:38.272709,SFGene:All
Background:Avg:37.79,Stdev:0.92,Max:39.8,Min:35.4
Noise:Avg:1.27,Stdev:0.05,Max:1.4,Min:1.1
RawQ:1.74
Keywords = ALL
Lot batch =


title: nl038

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:66, Count:32
Corner- Avg:4088, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:30.163839,SFGene:All
Background:Avg:53.99,Stdev:0.77,Max:55.9,Min:51.9
Noise:Avg:2.44,Stdev:0.12,Max:2.8,Min:2.2
RawQ:2.40
Keywords = ALL


title: nl025

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:47, Count:32
Corner- Avg:5054, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:35.682163,SFGene:All
Background:Avg:41.55,Stdev:1.09,Max:44.1,Min:38.9
Noise:Avg:1.33,Stdev:0.04,Max:1.5,Min:1.2
RawQ:1.85
Keywords = ALL
Lot batch =


title: nl029

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:95, Count:32
Corner- Avg:5221, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:42.728725,SFGene:All
Background:Avg:37.21,Stdev:1.03,Max:40.1,Min:34.9
Noise:Avg:1.31,Stdev:0.06,Max:1.6,Min:1.1
RawQ:1.79
Keywords = ALL
Lot batch =


title: nl024

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:173, Count:32
Corner- Avg:4297, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:33.665993,SFGene:All
Background:Avg:43.74,Stdev:0.82,Max:45.3,Min:41.5
Noise:Avg:1.32,Stdev:0.03,Max:1.4,Min:1.2
RawQ:1.89
Keywords = ALL
Lot batch =


title: nl023

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:52, Count:32
Corner- Avg:4368, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:60.826958,SFGene:All
Background:Avg:47.16,Stdev:1.06,Max:49.3,Min:44.1
Noise:Avg:1.32,Stdev:0.05,Max:1.4,Min:1.1
RawQ:1.96
Keywords = ALL
Lot batch =


title: nl026

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:89, Count:32
Corner- Avg:4553, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:52.330627,SFGene:All
Background:Avg:38.93,Stdev:0.56,Max:40.4,Min:37.6
Noise:Avg:1.28,Stdev:0.03,Max:1.4,Min:1.2
RawQ:1.79
Keywords = ALL
Lot batch =


title: nl022

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:84, Count:32
Corner- Avg:5496, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:22.382311,SFGene:All
Background:Avg:49.39,Stdev:0.61,Max:50.9,Min:47.7
Noise:Avg:1.91,Stdev:0.04,Max:2.1,Min:1.8
RawQ:2.20
Keywords = ALL
Lot batch =


title: nl021

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:54, Count:32
Corner- Avg:5211, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:23.455317,SFGene:All
Background:Avg:43.86,Stdev:0.51,Max:45.3,Min:42.4
Noise:Avg:1.69,Stdev:0.08,Max:2.0,Min:1.4
RawQ:2.01
Keywords = ALL
Lot batch =


title: nl020

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:197, Count:32
Corner- Avg:16223, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:7.672813,SFGene:All
Background:Avg:58.16,Stdev:1.02,Max:61.2,Min:55.2
Noise:Avg:2.85,Stdev:0.11,Max:3.3,Min:2.5
RawQ:2.63
Keywords = ALL
Lot batch =


title: nl019

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:84, Count:32
Corner- Avg:4456, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:31.186991,SFGene:All
Background:Avg:38.86,Stdev:0.74,Max:40.6,Min:36.7
Noise:Avg:1.39,Stdev:0.06,Max:1.7,Min:1.2
RawQ:1.77
Keywords = ALL
Lot batch =


title: nl018

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:67, Count:32
Corner- Avg:5021, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:17.573092,SFGene:All
Background:Avg:44.56,Stdev:1.09,Max:46.5,Min:41.0
Noise:Avg:1.78,Stdev:0.10,Max:2.2,Min:1.5
RawQ:2.03
Keywords = ALL


title: nl017

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:122, Count:32
Corner- Avg:6232, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:15.694045,SFGene:All
Background:Avg:48.64,Stdev:0.65,Max:50.2,Min:46.2
Noise:Avg:1.88,Stdev:0.07,Max:2.2,Min:1.7
RawQ:2.17
Keywords = ALL
Lot batch =


title: nl013

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:55, Count:32
Corner- Avg:5082, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:30.472088,SFGene:All
Background:Avg:40.02,Stdev:0.84,Max:42.3,Min:37.8
Noise:Avg:1.48,Stdev:0.06,Max:1.8,Min:1.3
RawQ:1.85
Keywords = ALL
Lot batch =


title: nl010

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:136, Count:32
Corner- Avg:6107, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:18.610527,SFGene:All
Background:Avg:43.23,Stdev:0.84,Max:44.8,Min:41.1
Noise:Avg:1.63,Stdev:0.08,Max:1.9,Min:1.4
RawQ:2.01
Keywords = ALL


title: nl015

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:60, Count:32
Corner- Avg:5126, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:21.319323,SFGene:All
Background:Avg:46.26,Stdev:0.48,Max:47.8,Min:45.0
Noise:Avg:1.69,Stdev:0.06,Max:1.8,Min:1.5
RawQ:2.09
Keywords = ALL


title: nl011

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:96, Count:32
Corner- Avg:6288, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:15.594237,SFGene:All
Background:Avg:44.95,Stdev:0.82,Max:46.8,Min:42.7
Noise:Avg:1.77,Stdev:0.08,Max:2.2,Min:1.6
RawQ:2.08
Keywords = ALL


title: nl014

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:178, Count:32
Corner- Avg:16500, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:9.871299,SFGene:All
Background:Avg:51.93,Stdev:1.11,Max:54.4,Min:48.5
Noise:Avg:2.62,Stdev:0.12,Max:3.1,Min:2.3
RawQ:2.50
Keywords = ALL
Lot batch =


title: nl012

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:136, Count:32
Corner- Avg:6835, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:12.196150,SFGene:All
Background:Avg:45.48,Stdev:1.26,Max:48.0,Min:42.3
Noise:Avg:1.96,Stdev:0.09,Max:2.3,Min:1.7
RawQ:2.11
Keywords = ALL
Lot batch =


title: nl008

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:88, Count:32
Corner- Avg:4626, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:31.225113,SFGene:All
Background:Avg:40.75,Stdev:1.08,Max:43.4,Min:38.5
Noise:Avg:1.40,Stdev:0.06,Max:1.7,Min:1.2
RawQ:1.84
Keywords = ALL


title: nl009

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:186, Count:32
Corner- Avg:13678, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:15.625345,SFGene:All
Background:Avg:45.46,Stdev:0.86,Max:47.4,Min:43.3
Noise:Avg:1.96,Stdev:0.11,Max:2.4,Min:1.6
RawQ:2.06
Keywords = ALL


title: nl007

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:177, Count:32
Corner- Avg:14548, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:14.216496,SFGene:All
Background:Avg:56.27,Stdev:0.94,Max:58.8,Min:53.4
Noise:Avg:2.54,Stdev:0.13,Max:2.9,Min:2.1
RawQ:2.58
Keywords = ALL


title: nl016

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:102, Count:32
Corner- Avg:4633, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:17.266479,SFGene:All
Background:Avg:43.86,Stdev:2.21,Max:50.4,Min:39.2
Noise:Avg:1.77,Stdev:0.11,Max:2.3,Min:1.5
RawQ:2.00
Keywords = ALL
Lot batch =


title: nl004

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:104, Count:32
Corner- Avg:5848, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:40.850620,SFGene:All
Background:Avg:39.45,Stdev:0.77,Max:41.3,Min:37.3
Noise:Avg:1.34,Stdev:0.05,Max:1.5,Min:1.2
RawQ:1.83
Keywords = ALL
Lot batch =


title: nl002

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:203, Count:32
Corner- Avg:7658, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:18.185745,SFGene:All
Background:Avg:47.91,Stdev:0.52,Max:49.1,Min:46.3
Noise:Avg:1.82,Stdev:0.07,Max:2.1,Min:1.6
RawQ:2.14
Keywords = ALL
Lot batch =


title: nl001

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:82, Count:32
Corner- Avg:5476, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:32.356899,SFGene:All
Background:Avg:42.64,Stdev:1.16,Max:44.8,Min:40.1
Noise:Avg:1.40,Stdev:0.06,Max:1.6,Min:1.3
RawQ:1.89
Keywords = ALL
Lot batch =


title: nl006

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:56, Count:32
Corner- Avg:4431, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:30.747509,SFGene:All
Background:Avg:43.69,Stdev:0.66,Max:44.9,Min:41.5
Noise:Avg:1.43,Stdev:0.05,Max:1.6,Min:1.3
RawQ:1.88
Keywords = ALL
Lot batch =


title: bovine IVF embryo gene profile2

status: Public on Aug 05 2004

city: Austin

first: Wenli

last: Zhou

state: TX

institute: ViaGen, InC

description: cross species hybridization

organism: Bos taurus

source_name: bovine IVF embryo total RNA pool


title: nl003

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:71, Count:32
Corner- Avg:5375, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:28.784847,SFGene:All
Background:Avg:40.23,Stdev:1.32,Max:43.0,Min:36.5
Noise:Avg:1.45,Stdev:0.06,Max:1.7,Min:1.3
RawQ:1.86
Keywords = ALL
Lot batch =


title: bovine IVF embryo gene profile1

description: cross species hybridization


title: nl005

description:
Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:168, Count:32
Corner- Avg:7374, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:17.752296,SFGene:All
Background:Avg:46.43,Stdev:1.44,Max:49.5,Min:42.9
Noise:Avg:1.78,Stdev:0.09,Max:2.1,Min:1.5
RawQ:2.10
Keywords = ALL
Lot batch =


title: Regulation of an overlapping set of genes - Slide 11

first: Shuang

last: Chang

state: MO

department: Biology

institute: Washington University

description:
Category: DNA metabolism
Subcategory: treated
Slide 11 - Testing the hypothesis that cytosine methylation and histone deacetylation regulate an overlapping set of genes
Experimenter: Craig Pikaard
Contact email: pikaard@biology.wustl.edu
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=00LaserPower=00
Lot batch = K79

organism: Arabidopsis thaliana

source_name: Control

source_name: TSA


title: bovine IVF embryo gene profile3

description: cross species hybridization


title: bovine spleen gene profile

description: cross species hybridization

source_name: bovine spleen total RNA


title: bovine liver gene profile

description: cross species hybridization

source_name: bovine liver total RNA


title: bovine muscle gene profile

description: cross species hybridization

source_name: bovine muscle total RNA


title: bovine kidney gene expression

description: cross species hybridization

source_name: bovine kidney total RNA


title: bovine lung gene profile

description: cross species hybridization

source_name: bovine lung total RNA


title: bovine heart gene expression

description: cross species hybridization

source_name: bovine heart total RNA


title: bovine brain gene profile

description: cross species hybridization

source_name: adult bovine brain


title: Regulation of an overlapping set of genes - Slide 5

description:
Category: DNA metabolism
Subcategory: treated
Slide 5 - Testing the hypothesis that cytosine methylation and histone deacetylation regulate an overlapping set of genes
Experimenter: Craig Pikaard
Contact email: pikaard@biology.wustl.edu
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=00LaserPower=00
Lot batch = K77


title: Regulation of an overlapping set of genes - Slide 8

description:
Category: DNA metabolism
Subcategory: treated
Slide 8 - Testing the hypothesis that cytosine methylation and histone deacetylation regulate an overlapping set of genes
Experimenter: Craig Pikaard
Contact email: pikaard@biology.wustl.edu
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=00LaserPower=00
Lot batch = K86


title: GD-13_2

status: Public on Aug 03 2004

city: LOUISVILLE

first: Partha

last: Mukhopadhyay

state: KY

address: 501 S PRESTON ST

department: Division of Craniofacial Development & Anomalies

institute: University of Louisville

description:
Gestation Day 13 orofacial tissue
Keywords = Orofacial
Keywords = embryo
Keywords = development

organism: Mus musculus

source_name: embryonic orofacial murine tissue


title: GD-14_2

description:
Gestation Day 14 orofacial tissue
Keywords = Orofacial
Keywords = embryo
Keywords = development


title: GD-14_3


title: GD-14_1


title: SJL eye 10 month rep 2

status: Public on Aug 02 2004

city: Cleveland

first: Henry

middle: J.

last: Kaminski

state: OH

address: 11100 Euclid Avenue

department: Neurology

institute: Case Western Reserve University

description:
Standard Affymetrix Protocol
Keywords = microarray, muscle

source_name: 10 month SJL extraocular muscle


title: SJL leg 10 month rep 1

source_name: 10 month SJL leg muscle


title: GD-13_3


title: SJL leg 10 month rep 3


title: GD-13_1


title: Balb leg 10 month rep 3

source_name: 10 month Balb leg muscle


title: SJL eye 10 month rep 3


title: Balb eye 10 month rep 3

source_name: 10 month Balb extraocular muscle


title: SJL eye 10 month rep 1


title: GD-12_2

description:
Gestation Day 12 orofacial tissue
Keywords = Orofacial
Keywords = embryo
Keywords = development


title: Balb leg 10 month rep 1


title: Balb eye 10 month rep 1


title: SJL eye 1 year rep 1

source_name: 1 year SJL extraocular muscle


title: GD-12_1


title: Balb eye 10 month rep 2


title: SJL leg 10 month rep 2


title: SJL leg 1 year rep 3

source_name: 1 year SJL leg muscle


title: SJL eye 1 year rep 3


title: Balb leg 10 month rep 2


title: GD-12_3


title: SJL leg 1 year rep 1


title: SJL leg 1 year rep 2


title: Balb eye 1 year rep 2

source_name: 1 year Balb extraocular muscle


title: Balb eye 1 year rep 1


title: Balb leg 1 year rep 2

source_name: 1 year Balb leg muscle


title: Balb leg 1 year rep 3


title: L1 062502 Rosi1

status: Public on Aug 01 2004

city: La Jolla

first: Albert

last: Hsiao

state: CA

institute: UC San Diego

description: 3T3-L1 mRNA treated with 1uM rosiglitazone for 24 hours

source_name: 3T3-L1 1uM rosiglitazone


title: L1 062502 Tro2

description: 3T3-L1 mRNA treated with 20uM troglitazone for 24 hours

source_name: 3T3-L1 20uM troglitazone


title: L1 062502 Pio2

description: 3T3-L1 mRNA treated with 20uM pioglitazone for 24 hours

source_name: 3T3-L1 20uM pioglitazone


title: TRO-4--71602


title: L1 062502 Tro1


title: ROSI-4--71602


title: Embryonic Ovary 18.5 dpc #1A

city: Pullman

first: James

last: Shima

state: WA

address: 531 Fulmer Hall/POB 644660

department: School of Molecular Biosciences

institute: Washington State University

description: Total ovarian RNA from BL/6-129 mice isolated using TRIzol reagent according to manufacturer's instructions. Signal intensities were scaled to a mean signal of 125.

source_name: total RNA from pooled embryonic ovaries at 18.5 days post coitum


title: CON-4--71602

description: 3T3-L1 mRNA treated with vehicle (0.1% DMSO) for 24 hours


title: L1 062502 Con2


title: L1 062502 Pio1


title: Embryonic Ovary 18.5 dpc #2A


title: Embryonic Ovary 14.5 dpc #1A

source_name: total RNA from pooled embryonic ovaries at 14.5 days post coitum


title: Embryonic Ovary 16.5 dpc #2A

source_name: total RNA from pooled embryonic ovaries at 16.5 days post coitum


title: L1 062502 Con1


title: Embryonic Ovary 16.5 dpc #1A


title: Balb leg 1 year rep 1


title: L1 062502 Rosi2


title: Embryonic Ovary 14.5 dpc #2A


title: Embryonic Testis 18.5 dpc #1A

description: Total testis RNA from BL/6-129 mice isolated using TRIzol reagent according to manufacturer's instructions. Signal intensities were scaled to a mean signal of 125.

source_name: total RNA from pooled embryonic testes at 18.5 days post coitum


title: Embryonic Ovary 12.5 dpc #1A

description:
Total ovarian RNA from BL/6-129 mice isolated using TRIzol reagent according to manufacturer's instructions. Signal intensities were scaled to a mean signal of 125.
Gonads were sexed using Sry PCR screening.

source_name: total RNA from pooled embryonic ovaries at 12.5 days post coitum


title: Embryonic Testis 18.5 dpc #2A


title: Embryonic Ovary 12.5 dpc #2A


title: Embryonic Testis 16.5 dpc #2A

source_name: total RNA from pooled embryonic testes at 16.5 days post coitum


title: Embryonic Ovary 11.5 dpc #2A

source_name: total RNA from pooled embryonic ovaries at 11.5 days post coitum


title: Embryonic Ovary 18.5 dpc #1C


title: Embryonic Testis 12.5 dpc #1A

description:
Total testis RNA from BL/6-129 mice isolated using TRIzol reagent according to manufacturer's instructions. Signal intensities were scaled to a mean signal of 125.
Gonad was sexed using Sry PCR screening.

source_name: total RNA from pooled embryonic testes at 12.5 days post coitum


title: Embryonic Testis 14.5 dpc #2A

source_name: total RNA from pooled embryonic testes at 14.5 days post coitum


title: Embryonic Ovary 11.5 dpc #1A


title: Embryonic Ovary 18.5 dpc #2C


title: Embryonic Testis 14.5 dpc #1A


title: Embryonic Testis 11.5 dpc #2A

source_name: total RNA from pooled embryonic testes at 11.5 days post coitum


title: Embryonic Testis 11.5 dpc #1A


title: Embryonic Testis 16.5 dpc #1A


title: mouse aorta cross strain comparison, C57_T08_HF_03

city: Stanford

first: Raymond

last: Tabibiazar

institute: Stanford

description:
C3H denotes C3H/HeJ mice whereas C57 denotes C57Bl/6 mice
T00 denotes baseline time point, whereas T04 means 4 weeks on diet, T08 means 8 weeks on diet and so on.
HF denotes high-fat diet, whereas NC is normal chow diet
Keywords = mouse aorta
Keywords = cross strain comparison

source_name: mouse aorta cross strain comparison, times 0, 4, 10, 24, 40 weeks

source_name: mouse embryonic day 17.5 total RNA


title: mouse aorta cross strain comparison, C57_T24_HF_03


title: mouse aorta cross strain comparison, C57_T40_HF_03


title: Embryonic Ovary 16.5 dpc #2C


title: Embryonic Testis 12.5 dpc #2A


title: mouse aorta cross strain comparison, C3H_T40_HF_01


title: Embryonic Ovary 14.5 dpc #2C


title: mouse aorta cross strain comparison, C3H_T40_NC_01


title: Embryonic Ovary 16.5 dpc #1C


title: mouse aorta cross strain comparison, C3H_T08_NC_01


title: Embryonic Ovary 14.5 dpc #1C


title: mouse aorta cross strain comparison, C57_T04_HF_03


title: mouse aorta cross strain comparison, C3H_T24_NC_01


title: mouse aorta cross strain comparison, C3H_T00_NC_01


title: mouse aorta cross strain comparison, C3H_T04_NC_01


title: mouse aorta cross strain comparison, C3H_T24_HF_01


title: Embryonic Ovary 12.5 dpc #1C


title: mouse aorta cross strain comparison, C3H_T08_HF_01


title: Embryonic Ovary 12.5 dpc #2C


title: Embryonic Testis 18.5 dpc #2C


title: Embryonic Ovary 11.5 dpc #2C


title: mouse aorta cross strain comparison, C57_T40_NC_01


title: Embryonic Testis 14.5 dpc #2C


title: Embryonic Testis 14.5 dpc #1C


title: Embryonic Testis 16.5 dpc #2C


title: Embryonic Testis 12.5 dpc #1C


title: Embryonic Ovary 11.5 dpc #1C


title: Embryonic Testis 18.5 dpc #1C


title: mouse aorta cross strain comparison, C57_T04_NC_01


title: Embryonic Testis 12.5 dpc #2C


title: Embryonic Testis 16.5 dpc #1C


title: mouse aorta cross strain comparison, C57_T00_NC_01


title: Embryonic Ovary 18.5 dpc #2B


title: mouse aorta cross strain comparison, C3H_T04_HF_01


title: mouse aorta cross strain comparison, C3H_T24_NC_03


title: mouse aorta cross strain comparison, C3H_T04_NC_03


title: mouse aorta cross strain comparison, C3H_T00_NC_03


title: Embryonic Ovary 18.5 dpc #1B


title: Embryonic Testis 11.5 dpc #1C


title: mouse aorta cross strain comparison, C57_T24_HF_01


title: Embryonic Testis 11.5 dpc #2C


title: Embryonic Ovary 16.5 dpc #2B


title: Embryonic Ovary 16.5 dpc #1B


title: mouse aorta cross strain comparison, C3H_T40_NC_03


title: Embryonic Ovary 14.5 dpc #2B


title: mouse aorta cross strain comparison, C3H_T08_NC_03


title: mouse aorta cross strain comparison, C57_T24_NC_01


title: Embryonic Ovary 12.5 dpc #1B


title: mouse aorta cross strain comparison, C57_T08_NC_01


title: mouse aorta cross strain comparison, C57_T40_HF_01


title: mouse aorta cross strain comparison, C57_T08_HF_01


title: Embryonic Ovary 14.5 dpc #1B


title: mouse aorta cross strain comparison, C3H_T04_HF_02


title: mouse aorta cross strain comparison, C3H_T08_HF_02


title: Embryonic Ovary 12.5 dpc #2B


title: mouse aorta cross strain comparison, C3H_T40_HF_02


title: Embryonic Testis 18.5 dpc #2B


title: mouse aorta cross strain comparison, C57_T08_HF_02


title: mouse aorta cross strain comparison, C57_T04_HF_01


title: Embryonic Ovary 11.5 dpc #2B


title: Embryonic Testis 18.5 dpc #1B


title: mouse aorta cross strain comparison, C57_T40_HF_02


title: mouse aorta cross strain comparison, C3H_T24_HF_02


title: Embryonic Ovary 11.5 dpc #1B


title: mouse aorta cross strain comparison, C57_T04_HF_02


title: mouse aorta cross strain comparison, C57_T24_HF_02


title: Embryonic Testis 14.5 dpc #2B


title: Embryonic Testis 14.5 dpc #1B


title: Embryonic Testis 16.5 dpc #1B


title: Embryonic Testis 16.5 dpc #2B


title: Embryonic Testis 12.5 dpc #1B


title: mouse aorta cross strain comparison, C3H_T40_HF_03


title: mouse aorta cross strain comparison, C3H_T40_NC_02


title: mouse aorta cross strain comparison, C3H_T24_HF_03


title: mouse aorta cross strain comparison, C3H_T04_HF_03


title: Embryonic Testis 11.5 dpc #2B


title: MF-46

city: Berne 9

first: Martin

last: Flück

state: Bern

address: Bühlstrase 26

department: Department of Anatomy

country: Switzerland

institute: University of Berne

description: 14 days hindlimb suspended, 5 day reloaded

organism: Rattus norvegicus

source_name: soleus muscle, young female pathogen-free Wistar rats


title: mouse aorta cross strain comparison, C3H_T08_HF_03


title: Embryonic Testis 11.5 dpc #1B


title: MF-45


title: mouse aorta cross strain comparison, C57_T40_NC_02


title: RT210B versus unstable mixture 1, replicate 2

city: Baltimore

first: Andrew

last: Snyder

state: MD

address: 655 West Baltimore Street

department: Radiation Oncology Research Laboratory

institute: University of Maryland, Baltimore

description:
Equal quantities of unstable clones LS12 and 10-107-9 tested versus RT210B (stable)
normalization factor of 3.8

organism: Cricetulus griseus


title: Embryonic Testis 12.5 dpc #2B


title: mouse aorta cross strain comparison, C3H_T08_NC_02


title: mouse aorta cross strain comparison, C57_T24_NC_02


title: mouse aorta cross strain comparison, C3H_T24_NC_02


title: mouse aorta cross strain comparison, C57_T04_NC_02


title: mouse aorta cross strain comparison, C57_T08_NC_02


title: mouse aorta cross strain comparison, C3H_T04_NC_02


title: RT210B versus unstable mixture 1, replicate 1

description: Equal quantities of unstable clones LS12 and 10-107-9 tested versus RT210B (stable)


title: MF-44


title: MF_43


title: MF-41

description:
14 days hindlimb suspended, 5 day reloaded
RNA was isolated from cryosections using RNeasy kit (Qiagen). 5 microgram total RNA was subjected to microarray analysis.


title: RT210B versus unstable mixture 2, replicate 1

description:
Equal quantities of unstable clones Fe10-3 and 10-56-11 tested versus RT210B (stable)
Normalization factor of 1.169


title: mouse aorta cross strain comparison, C57_T04_NC_03


title: mouse aorta cross strain comparison, C57_T00_NC_03


title: RT210B versus unstable mixture 2, replicate 2

description: Equal quantities of unstable clones Fe10-3 and 10-56-11 tested versus RT210B (stable)


title: mouse aorta cross strain comparison, C57_T24_NC_03


title: mouse aorta cross strain comparison, C3H_T00_NC_02


title: 3 weeks TAC-2

status: Public on Jul 31 2004

city: Palo Alto

first: Mingming

last: Zhao

department: Pediatrics

institute: Stanford University

description: microarray analysis of gene expression after transverse aortic constriction in mice - 3 weeks TAC group No.2

source_name: mouse heart


title: S.LEW (chr1x3)x3 VS Dahl salt-sensitive (S)

city: Rockville

first: Norman

middle: H

last: Lee

address: 9712 Medical Center Drive

department: Department of Mammalian Genomics

institute: The Institute for Genomic Research

description: LOWESS normalized values

source_name: Dahl salt-sensitive (S) rats (source: Medical College of Ohio)

source_name: S.LEW (chr1x3)x3 (source: Medical College of Ohio)


title: S.LEW (chr1x3)x3 VS Dahl salt-sensitive (S) 4B

description: LOWESS normalized values


title: mouse aorta cross strain comparison, C57_T00_NC_02


title: S.LEW (chr1x3)x3 VS Dahl salt-sensitive (S) 5A

description: LOWESS normalized values


title: S.LEW (chr1x3)x3 VS Dahl salt-sensitive (S) 3B

description: LOWESS normalized values


title: 48 hrs TAC-5

description: microarray analysis of gene expression after transverse aortic constriction in mice - 48 hours TAC group No.5


title: S.LEW (chr1x3)x3 VS Dahl salt-sensitive (S) 6B

description: LOWESS normalized values


title: S.LEW (chr1x3)x3 VS Dahl salt-sensitive (S) 1B

description: LOWESS normalized values


title: 48 hrs TAC-4

description: microarray analysis of gene expression after transverse aortic constriction in mice - 48 hours TAC group No.4


title: S.LEW (chr1x3)x3 vs Dahl salt-sensitive (S) rats #4A

description: LOWESS normalized values


title: S.LEW (chr1x3)x3 VS Dahl salt-sensitive (S) 5B

description: LOWESS normalized values


title: mouse aorta cross strain comparison, C57_T08_NC_03


title: S.LEW (chr1x3)x3 VS Dahl salt-sensitive (S) 3A

description: LOWESS normalized values


title: S.LEW (chr1x3)x3 VS Dahl salt-sensitive (S) 2A

description: LOWESS normalized values


title: 48 hrs TAC-3

description: microarray analysis of gene expression after transverse aortic constriction in mice - 48 hours TAC group No.3


title: S.LEW (chr1x3)x3 VS Dahl salt-sensitive (S) 6A

description: LOWESS normalized values


title: 48 hrs sham-4

description: microarray analysis of gene expression after transverse aortic constriction in mice - 48 hours sham group No.4


title: 48 hrs TAC-1

description: microarray analysis of gene expression after transverse aortic constriction in mice - 48 hours TAC group No.1


title: 48 hrs TAC-2

description: microarray analysis of gene expression after transverse aortic constriction in mice - 48 hours TAC group No.2


title: 48 hrs sham-3

description: microarray analysis of gene expression after transverse aortic constriction in mice - 48 hours sham group No.3


title: 48 hrs sham-2

description: microarray analysis of gene expression after transverse aortic constriction in mice - 48 hours sham group No.2


title: 10 days TAC-4

description: microarray analysis of gene expression after transverse aortic constriction in mice - 10 days TAC group No.4


title: 48 hrs sham-1

description: microarray analysis of gene expression after transverse aortic constriction in mice - 48 hours sham group No.1


title: mouse aorta cross strain comparison, C57_T40_NC_03

description:
C3H denotes C3H/HeJ mice whereas C57 denotes C57Bl/6 mice
T00 denotes baseline time point, whereas T04 means 4 weeks on diet, T08 means 8 weeks on diet and so on.
HF denotes high-fat diet, whereas NC is normal chow diet
Keywords = mouse aorta
Keywords = cross strain comparison


title: 10 days sham-4

description: microarray analysis of gene expression after transverse aortic constriction in mice - 10 days sham group No.4


title: 10 days sham-3

description: microarray analysis of gene expression after transverse aortic constriction in mice - 10 days sham group No.3


title: 10 days TAC-2

description: microarray analysis of gene expression after transverse aortic constriction in mice - 10 days TAC group No.2


title: 10 days TAC-1

description: microarray analysis of gene expression after transverse aortic constriction in mice - 10 days TAC group No.1


title: 10 days TAC-3

description: microarray analysis of gene expression after transverse aortic constriction in mice - 10 days TAC group No.3


title: 3 wks TAC-4

description: microarray analysis of gene expression after transverse aortic constriction in mice - 3 wks TAC group No.4


title: 3 wks TAC-5

description: microarray analysis of gene expression after transverse aortic constriction in mice - 3 wks TAC group No.5


title: 3 wks sham-4

description: microarray analysis of gene expression after transverse aortic constriction in mice - 3 wks sham group No.4


title: 3 wks sham-2

description: microarray analysis of gene expression after transverse aortic constriction in mice - 3 wks sham group No.2


title: Peripheral monocytes with IL4

city: Berlin

first: Hartmut

last: Kuhn

address: Monbijoustr. 2

department: University Clinics Charite, Humboldt University

country: Germany

institute: Institute of Biochemistry

description: Gene expression of human peripheral monocytes cultured in vitro for 3 days in the presence of interleukin 4

source_name: peripheral monocytes with IL4


title: 3 wks TAC-3

description: microarray analysis of gene expression after transverse aortic constriction in mice - 3 wks TAC group No.3


title: 3wks sham-1

description: microarray analysis of gene expression after transverse aortic constriction in mice - 3 wks sham group No.1


title: 3 wks TAC-1

description: microarray analysis of gene expression after transverse aortic constriction in mice - 3 wks TAC group No.1


title: Peripheral monocytes with IL13

description: Gene expression of human peripheral monocytes cultured in vitro for 3 days in the presence of interleukin 13

source_name: peripheral monocytes with IL13


title: 10 days sham-1

description: microarray analysis of gene expression after transverse aortic constriction in mice - 10 days sham group No.1


title: Control (for PS cDKO) 6 months

city: Boston

first: Vassilios

last: Beglopoulos

state: MA

address: 77 Avenue Louis Pasteur

department: Center for Neurologic Diseases

institute: Brigham and Women's Hospital, Harvard Medical School

description:
Gene expression profile of presenilin conditional double knockout cerebral cortex, comparing to control.
Age of mice: 6 months

source_name: Mouse cerebral cortex


title: ISCH_d (ischemia, 4th replicate)

status: Public on Jul 30 2004

city: Zurich

first: Michael

last: Zaugg

address: Raemistrasse 100

department: Anesthesiology

institute: Anesthesiology, University Hospital Zurich

description:
RNA was extracted and handled using standard and recommended Affymetrix procedures. For each treatment protocol, 5 biological replicates were analyzed.
Keywords = rat, heart left ventricle, comparison between ischemia/reperfusion and pharmacological/ischemic preconditioning

source_name: rat heart, left ventricle


title: ISCH_e (ischemia, 5th replicate)


title: Peripheral monocytes - control

description: Gene expression of human peripheral monocytes cultured in vitro for 3 days in the absence (control) of cytokines

source_name: peripheral monocytes


title: ISCH_c (ischemia, 3rd replicate)


title: 12mo APPSw #2

city: Madison

first: Thor

middle: D

last: Stein

state: WI

institute: University of Wisconsin-Madison

description: The left hippocampus was dissected out of a male, 12 month-old mouse overexpressing amyloid precursor protein with the Swedish mutation (Tg2576; APPSw).  Total RNA was extracted and the data were analyzed with MAS 5.0 and scaled to 2500.

source_name: left hippocampus


title: S.LEW (chr1x3)x3 VS Dahl salt-sensitive (S) 1A

description: LOWESS normalized values


title: 12mo Control #2

description: The left hippocampus was dissected out of a male, 12 month-old nontransgenic control mouse (C57B6/SJL).  Total RNA was extracted and the data were analyzed with MAS 5.0 and scaled to 2500.


title: ISCH_a (ischemia, 1st replicate)


title: 12mo APPSw #1


title: ISCH_b (ischemia, 2nd replicate)


title: IPC_TRI_d (trigger of ischemic preconditioning, 4th replicate)


title: IPC_d (ischemic preconditioning, 4th replicate)


title: Ago3 IP Experiment 2 Replicate 2

city: Chapel Hill

first: Scott

middle: M

last: Hammond

state: NC

department: Dept Cell and Developmental Biology

institute: University of North Carolina

description:
293 cells were tranfected with Myc-tagged argonaute family members and associated microRNAs quantitated by microarray analysis of immunoprecipitates. Human argonaute 1, 2, and 3, and a control immunoprecipitation were done. Two independent immunoprecipitations were performed, with two replicate points per immunoprecipitation. Ch1and Ch2 net values are median intensity, background subtracted, unnormalized. Normalized Ch2 values for argonaute immunoprecipitations are median center normalized. Normalized Ch2 values for control immunoprecipitates are normalized by a constant that is the average of the constants used for argonaute immunoprecipitates.
Keywords = microRNA
Keywords = miRNA
Keywords = argonaute

source_name: Reference oligonucleotide set

source_name: Labeled microRNA


title: IPC_e (ischemic preconditioning, 5th replicate)


title: IPC_TRI_c (trigger of ischemic preconditioning, 3rd replicate)


title: IPC_TRI_b (trigger of ischemic preconditioning, 2nd replicate)


title: IPC_TRI_e (trigger of ischemic preconditioning, 5th replicate)


title: Ago3 IP Experiment 2 Replicate 1


title: IPC_c (ischemic preconditioning, 3rd replicate)


title: IPC_TRI_a (trigger of ischemic preconditioning, 1st replicate)


title: IPC_b (ischemic preconditioning, 2nd replicate)


title: Ago3 IP Experiment 1 Replicate 2


title: IPC_a (ischemic preconditioning, 1st replicate)


title: PS cDKO 6 months


title: CTL_d (control, 4th replicate)


title: 10 days sham-2

description: microarray analysis of gene expression after transverse aortic constriction in mice - 10 days sham group No.2


title: Ago2 IP Experiment 2 Replicate 2


title: Ago2 IP Experiment 2 Replicate 1


title: Ago2 IP Experiment 1 Replicate 2


title: Ago2 IP Experiment 1 Replicate 1


title: Ago3 IP Experiment 1 Replicate 1


title: CTL_e (control, 5th replicate)


title: CTL_b (control, 2nd replicate)


title: CTL_a (control, 1st replicate)


title: Ago1 IP Experiment 2 Replicate 2


title: APC_TRI_e (trigger of anesthetic-preconditioning, 5th replicate)


title: Ago1 IP Experiment 2 Replicate 1


title: 3 wks sham-3

description: microarray analysis of gene expression after transverse aortic constriction in mice - 3 wks sham group No.3


title: Ago1 IP Experiment 1 Replicate 2


title: Ago1 IP Experiment 1 Replicate 1


title: CONT. IP Experiment 2 Replicate 2


title: CONT. IP Experiment 2 Replicate 1


title: CONT. IP Experiment 1 Replicate 2


title: CTL_c (control, 3rd replicate)


title: CONT. IP Experiment 1 Replicate 1


title: APC_TRI_b (trigger of anesthetic-preconditioning, 2nd replicate)


title: APC_e (anesthetic-preconditioning, 5th replicate)


title: APC_TRI_d (trigger of anesthetic-preconditioning, 4th replicate)


title: APC_TRI_a (trigger of anesthetic-preconditioning, 1st replicate)


title: APC_a (anesthetic-preconditioning, 1st replicate)


title: APC_TRI_c (trigger of anesthetic-preconditioning, 3rd replicate)


title: APC_c (anesthetic-preconditioning, 3rd replicate)


title: APC_b (anesthetic-preconditioning, 2nd replicate)


title: NHE1 null mutation brain stem-diencephalon-2

status: Public on Jul 29 2004

first: Dan

address: CMG 103, 9500 Gilman Drive, MC0735

institute: University of California, San Diego, School of Medicine

description: Comparison between NHE1 null mutation and wild-type. RNA has been amplified.

source_name: Wild-type brain stem-diencephalon (pooled)


title: NHE1 null mutation brain stem-diencephalon-1


title: NHE1 null mutation cerebellum-1

source_name: Cerebellum of NHE1 null mutant mouse brain

source_name: Cerebellum of wild-type mouse brain (pooled)


title: NHE1 null mutation cerebellum-DS2

description: Comparison between NHE1 null mutation and wild-type. RNA has been amplified. Dye-swap.

source_name: Cerebellum of NHE1 wild-type mouse brain (pooled)


title: NHE1 null mutation cerebellum-DS1


title: NHE1 null mutation cerebellum-3


title: NHE1 null mutation hippocampus-1

source_name: Hippocampus of NHE1 null mutant mouse brain

source_name: Hippocampus of wild-type mouse brain (pooled)


title: NHE1 null mutation cortex-1

source_name: Cortex of NHE1 null mutant mouse brain

source_name: Cortex of wild-type mouse brain (pooled)


title: NHE1 null mutation cortex-2


title: NHE1 null mutation brain stem-diencephalon-DS2

source_name: NHE1 null mutation brainstem-diencephalon


title: NHE1 null mutation brain stem-diencephalon-DS1


title: NHE1 null mutation brain stem-diencephalon-3


title: NHE1 null mutation hippocampus-2DS


title: NHE1 null mutation cortex-DS


title: APC_d (anesthetic-preconditioning, 4th replicate)


title: NHE1 null mutation cerebellum-2


title: NHE1 null mutation hippocampus-1DS


title: NHE1 null mutation hippocampus-3


title: NHE1 null mutation cortex-3


title: NHE1 null mutation cortex-2DS


title: 0.5D

status: Public on Jul 27 2004

city: Laramie

first: Mark

last: Gomelsky

state: WY

department: Molecular Biology

institute: University of Wyoming

description: Growth at 0.5% O2, 1% CO2, 98.5% N2 in the dark. Cells are collected at OD 0.18. RNA was isolated with bead beater + RNeasy kits

organism: Cereibacter sphaeroides

source_name: Rhodobacter sphaeroides 2.4.1


title: 0.5C


title: 0.5A


title: Day 14 Liver Tissue Array#4

city: Raleigh

first: Jack

last: Odle

department: Functional Genomics/Animal Science

institute: North Carolina State University

description:
Analysis of RNA from liver tissue extracted from polygenic obese mice at day 14 of the trial. Each sample (treatment and control) represent pools of either five or four samples.
Keywords = Obesity
Keywords = conjugated linoleic acid
Keywords = polygenic obese mice
Keywords = lipid metabolism

source_name: Cy-3: Treated (Conjugated Linoleic Acid Fed)

source_name: Cy-5: Control (Linoleic Acid Fed)


title: MeJA_12h_exp2

status: Public on Jul 23 2004

city: Campinas

first: Vicente

middle: Eugenio

last: De Rosa Junior

state: SP

department: CBMEG

country: Brazil

institute: Unicamp

description: Expression profile of sugarcane plantlet leaves exposed to Methyl jasmonate (MeJA, 100uM) for 0, 30 min, 1h, 3h, 6h, and 12 h. 26 ESTs were identified, including both novel and well known MeJA inducible genes.

organism: Saccharum officinarum species complex

source_name: leaves treated with MeJA after 12 h


title: MeJA_12h_exp1


title: MeJA_1h_exp1

source_name: leaves treated with MeJA after 1 h


title: MeJA_3h_exp1

source_name: leaves treated with MeJA after 3 h


title: MeJA_30min_exp1

source_name: leaves treated with MeJA after 30 min


title: MeJA_6h_exp2

source_name: leaves treated with MeJA after 6 h


title: MeJA_6h_exp1


title: NHE1 null mutation hippocampus-2

last: Zhou


title: MeJA_ctrl_exp1

source_name: leaves treated with distillated water


title: Day 5 Epididymal Adipose Array#1

first: Joseph

last: Cassady

description:
Analysis of RNA from epididymal adipose tissue extracted from polygenic obese mice at day 5 of the trial. Each sample (treatment and control) represent pools of either five or four samples.
Keywords = Obesity
Keywords = conjugated linoleic acid
Keywords = polygenic obese mice
Keywords = adiposity
Keywords = lipid metabolism
Keywords = apoptosis

source_name: Cy-3: Control (Linoleic Acid Fed)

source_name: Cy-5: Treated (Conjugated Linoleic Acid Fed)


title: Day 5 Epididymal Adipose Array#4

description:
Analysis of RNA from epididymal adipose tissue extracted from polygenic obese mice at day 5 of the trial. Each sample (treatment and control) represent pools of either five or four different samples.
Keywords = Obesity
Keywords = conjugated linoleic acid
Keywords = polygenic obese mice
Keywords = adiposity
Keywords = lipid metabolism
Keywords = apoptosis


title: Day 5 Epididymal Adipose Array#2


title: newborn + GFP

status: Public on Jul 22 2004

city: Epalinges

last: Dotto

state: VD

address: 153 Chemin de Bovaress

department: Biochemistry

institute: Lausanne University

description:
RNA derived from newborn keratinocytes infected with a control virus expressing GFP (green fluorescent protein) only. Total RNA was used to prepare cRNA probes that were hybridized to oligonucleotide arrays.
Keywords = mouse
Keywords = keratinocyte
Keywords = skin
Keywords = Notch1

source_name: mouse keratinocytes


title: MeJA_3h_exp2


title: E15.5

description:
primary keratinocytes isolated from mouse embryos at 15.5 days of gestation (cells in the active phase of skin morphogenesis and expansion prior to birth). Total RNA from freshly isolated embryonic keratinocytes was used to prepare cRNA probes that were hybridized to oligonucleotide arrays
Keywords = mouse
Keywords = keratinocyte
Keywords = skin
Keywords = embryonic development

source_name: embryonic mice keratinocytes


title: Day 14 Liver Tissue Array#2


title: Day 14 Liver Tissue Array#3


title: MeJA_ctrl_exp2


title: MeJA_30min_exp2


title: MeJA_1h_exp2


title: newborn + Notch1

description:
RNA derived from newborn keratinocytes infected with a recombinant adenovirus expressing a constitutive activated form of Notch1 together with the green fluorescent protein (GFP).Total RNA was used to prepare cRNA probes that were hybridized to oligonucleotide arrays
Keywords = mouse
Keywords = keratinocyte
Keywords = skin
Keywords = Notch1


title: GC2_SGSC3526_SARB42_5D171_3

status: Public on Jul 21 2004

type: genomic

city: Irvine

last: McClelland

address: 132 Med Surge I

department: Microbiology & Molecular Genetics

institute: University of California, Irvine

description:
genomic comparison SGSC3526/SARB42
User - PCheng
Date_of_Scan = Thu May 27 15:06:21 2004

molecule: genomic DNA

organism: Salmonella enterica subsp. enterica serovar Paratyphi A

source_name: SGSC3526 gDNA overnight in LB

source_name: SARB42 gDNA overnight in LB


title: GC2_SGSC3526_SARB42_5D171_2


title: 12mo Control #1

source_name: left hippocampus


title: Day 14 Liver Tissue Array#1


title: Day 5 Epididymal Adipose Array#3


title: Day 14 Epididymal Adipose Array#1

description:
Analysis of RNA from epididymal adipose tissue extracted from polygenic obese mice at day 14 of the trial. Each sample (treatment and control) represent pools of either five or four different samples.
Keywords = Obesity
Keywords = conjugated linoleic acid
Keywords = polygenic obese mice
Keywords = adiposity
Keywords = lipid metabolism
Keywords = apoptosis


title: Day 14 Epididymal Adipose Array#3


title: GC2_SGSC3588_SARB42_5D038_1

description:
genomic comparison SGSC3588/SARB42
User - PCheng
Date_of_Scan = Mon May 24 12:15:03 2004

source_name: SGSC3588 gDNA overnight in LB


title: newborn

description:
primary keratinocytes isolated from 2 day old mice. Total RNA from freshly isolated newborn keratinocytes was used to prepare cRNA probes that were hybridized to oligonucleotide arrays
Keywords = mouse
Keywords = keratinocyte
Keywords = skin
Keywords = embryonic development

source_name: newborn mice keratinocytes


title: Day 14 Epididymal Adipose Array#4

source_name: Cy-3: Treated (Conjugated Linoleic Acid Fed)


title: GC2_SGSC3526_SARB42_5D171_1


title: GC2_SGSC2723_SARB42_5D016_3

description:
genomic comparison SGSC2723/SARB42
User - sporwollik
Date_of_Scan = Tue May 11 16:52:40 2004

source_name: SGSC2723 gDNA overnight in LB


title: GC2_SGSC2724_SARB42_5D015_2

description:
genomic comparison SGSC2724/SARB42
User - sporwollik
Date_of_Scan = Wed May 19 15:42:16 2004

source_name: SGSC2724 gDNA overnight in LB


title: GC2_SGSC2722_SARB42_5D033_3

description:
genomic comparison SGSC2722/SARB42
User - PCheng
Date_of_Scan = Mon May 24 11:00:33 2004

source_name: SGSC2722 gDNA overnight in LB


title: Day 14 Epididymal Adipose Array#2


title: GC2_SGSC3588_SARB42_5D038_3


title: GC2_SGSC3588_SARB42_5D038_2


title: GC2_SGSC2722_SARB42_5D033_1


title: GC2_SGSC3023_SARB42_5D039_1

description:
genomic comparison SGSC3023/SARB42
User - PCheng
Date_of_Scan = Mon May 24 11:32:52 2004

source_name: SGSC3023 gDNA overnight in LB


title: GC2_SGSC2723_SARB42_5D016_2


title: GC2_SGSC2689_SARB42_5D006_3

description:
genomic comparison SGSC2689/SARB42
User - PCheng
Date_of_Scan = Mon May 24 10:22:14 2004

source_name: SGSC2689 gDNA overnight in LB


title: GC2_SGSC2724_SARB42_5D015_3


title: GC2_SGSC2724_SARB42_5D015_1


title: GC2_SGSC2722_SARB42_5D033_2


title: GC2_SGSC3023_SARB42_5D039_3


title: GC2_SGSC2723_SARB42_5D016_1


title: GC2_SGSC3023_SARB42_5D039_2


title: GC2_SGSC2689_SARB42_5D006_2


title: GC2_SGSC2688_SARB42_5D005_3

description:
genomic comparison SGSC2688/SARB42
User - PCheng
Date_of_Scan = Mon May 24 09:28:27 2004

source_name: SGSC2688 gDNA overnight in LB


title: GC2_SGSC2686_SARB42_5D032_1

description:
genomic comparison SGSC2686/SARB42
User - sporwollik
Date_of_Scan = Mon May 24 15:01:52 2004

source_name: SGSC2686 gDNA overnight in LB


title: GC2_SGSC2688_SARB42_5D005_2


title: GC2_SGSC2686_SARB42_5D032_2


title: GC2_SGSC2689_SARB42_5D006_1


title: -Gly20-1 (12265374gly20-2nov27,02)

status: Public on Jul 17 2004

city: Toronto

first: Andy

middle: L

last: Bognar

state: Ontario

address: 1 King's College Circle

department: Medical Genetics and Biology

country: Canada

institute: University of Toronto

description:
Comparison of cDNA made from mRNA of deletion set strain W3031A grown with glycine to cDNA made from mRNA from the same strain harvested 20 min after resuspension in minimal medium lacking glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.

organism: Saccharomyces cerevisiae

source_name: Time course t=0 sample of strain W3031A grown on minimal + 10 mM glycine

source_name: Time course 20 min sample of strain W3031A after cells were filtered and resuspended in minimal -glycine


title: -Gly40-4 (12265304Gly40)

description:
Comparison of cDNA made from mRNA of deletion set strain W3031A grown with glycine to cDNA made from mRNA from the same strain harvested 40 min after resuspension in minimal medium lacking glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.

source_name: Time course 40 min sample of strain W3031A after cells were filtered and resuspended in minimal -glycine


title: GC2_SGSC2276_SARB42_5D008_1

description:
genomic comparison SGSC2276/SARB42
User - PCheng
Date_of_Scan = Fri May 21 11:43:48 2004

source_name: SGSC2276 gDNA overnight in LB


title: -Gly20-2 (12437977gly2011jul-03-medium)

description:
Comparison of cDNA made from mRNA of deletion set strain Y2454 grown with glycine to cDNA made from mRNA from the same strain harvested 20 min after resuspension in minimal medium lacking glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.

source_name: Time course t=0 sample of strain Y2454 grown on minimal + 10 mM glycine

source_name: Time course 20 min sample of strain Y2454 after cells were filtered and resuspended in minimal -glycine


title: -Gly20shm2-1 (12443942deltaSHM2-gly20-2march5,03)

description:
Comparison of cDNA made from mRNA of deletion set strain Y02669 grown with glycine to cDNA made from mRNA from the same strain harvested 20 min after resuspension in minimal medium lacking glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.

source_name: Time course t=0 sample of strain Y02669 grown on minimal + 10 mM glycine

source_name: Time course 20 min sample of strain Y02669 after cells were filtered and resuspended in minimal -glycine


title: -Gly40-2 (12437982 WTgly40-medium)

description:
Comparison of cDNA made from mRNA of deletion set strain Y2454 grown with glycine to cDNA made from mRNA from the same strain harvested 40 min after resuspension in minimal medium lacking glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.

source_name: Time course 40 min sample of strain Y2454 after cells were filtered and resuspended in minimal -glycine


title: -Gly80-2 (12437988 WTgly80-medium)

description:
Comparison of cDNA made from mRNA of deletion set strain Y2454 grown with glycine to cDNA made from mRNA from the same strain harvested 80 min after resuspension in minimal medium lacking glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.

source_name: Time course 80 min sample of strain Y2454 after cells were filtered and resuspended in minimal -glycine


title: GC2_SGSC2688_SARB42_5D005_1

source_name: SARB42 gDNA overnight in LB


title: GC2_SGSC2276_SARB42_5D008_2


title: GC2_SGSC2687_SARB42_5D036_3

description:
genomic comparison SGSC2687/SARB42
User - PCheng
Date_of_Scan = Fri May 21 13:06:26 2004

source_name: SGSC2687 gDNA overnight in LB


title: GC2_SGSC2679_SARB42_5D037_1

description:
genomic comparison SGSC2679/SARB42
User - PCheng
Date_of_Scan = Fri May 21 12:32:57 2004

source_name: SGSC2679 gDNA overnight in LB


title: GC2_SGSC2687_SARB42_5D036_2


title: GC2_SGSC2679_SARB42_5D037_2


title: GC2_SGSC2686_SARB42_5D032_3


title: -Gly80-1 (12260127gly80-2nov27,02)

description:
Comparison of cDNA made from mRNA of deletion set strain W3031A grown with glycine to cDNA made from mRNA from the same strain harvested 80 min after resuspension in minimal medium lacking glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.

source_name: Time course 80 min sample of strain W3031A after cells were filtered and resuspended in minimal -glycine


title: GC2_SGSC2679_SARB42_5D037_3


title: GC2_SGSC2687_SARB42_5D036_1


title: -Gly80bas1-2 (12264631bas1Gly80)

description:
Comparison of cDNA made from mRNA of deletion set strain Y06015 grown with glycine to cDNA made from mRNA from the same strain harvested 80 min after resuspension in minimal medium lacking glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.

source_name: Time course t=0 sample of strain Y06015 grown on minimal + 10 mM glycine

source_name: Time course 80 min sample of strain Y06015 after cells were filtered and resuspended in minimal -glycine


title: -Gly80bas2-2 (12264634bas2Gly80)

description:
Comparison of cDNA made from mRNA of deletion set strain Y03803  grown with glycine to cDNA made from mRNA from the same strain harvested 80 min after resuspension in minimal medium lacking glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.

source_name: Time course t=0 sample of strain Y03803 grown on minimal + 10 mM glycine

source_name: Time course 80 min sample of strain Y03803 after cells were filtered and resuspended in minimal -glycine


title: -Gly80shm2-1 (12440347deltaSHM2-gly80-2march5,03)

description:
Comparison of cDNA made from mRNA of deletion set strain Y02669 grown with glycine to cDNA made from mRNA from the same strain harvested 80 min after resuspension in minimal medium lacking glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.

source_name: Time course 80 min sample of strain Y02669  after cells were filtered and resuspended in minimal -glycine


title: SSbas1-2 (12250816bas1ss)

description:
Comparison of cDNA made from mRNA of deletion set strain Y06015 grown with or without glycine during steady state growth to early log phase.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.

source_name: Yeast strain Y06015 grown on minimal +10 mM glycine

source_name: Yeast strain Y06015 grown on minimal


title: SSbas2-2 (12251958bas2ss)

description:
Comparison of cDNA made from mRNA of deletion set strain Y03803 grown with or without glycine during steady state growth to early log phase.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.

source_name: Yeast strain Y03803 grown on minimal +10 mM glycine

source_name: Yeast strain Y03803 grown on minimal


title: -Gly80bas1-1 (12444018BAS1-gly80)


title: SSbas2-1 (12265324BAS2-GLY-SteadyST)

source_name: Yeast strain BY4741 grown on minimal +10 mM glycine

source_name: Yeast strain BY4741 grown on minimal


title: +Gly20 (203587GLY20)

description:
Comparison of cDNA made from mRNA of deletion set strain W3031A grown on minimal medium lacking glycine to cDNA made from mRNA from the same strain harvested 20 min after addition of 10 mM glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Quantarray 1.0 software (GSI Lumonics). Expression ratios were normalized and median centered for the Quantarray data files by Quantarray Data Handler 3.0. This software also applied filters for background and spot similarity so that low intensity spots at or near background levels and spots that differed more than 2-fold in their expression ratio were eliminated. Spot intensity and background data came from the Quantarray data files and the ratios of intensities at the two wavelengths were from the Quantarray Data Handler. The latter data were background subtracted normalized and averaged. Data points that are blank were removed by the background and spot similarity filters.

source_name: Time course t=0 sample of strain W3031A grown on minimal

source_name: Time course 20 min sample of strain W3031A after addition of 10 mM glycine


title: GC2_SGSC2276_SARB42_5D008_3

source_name: SGSC2276 gDNA overnight in LB

source_name: SARB42 gDNA overnight in LB


title: -Gly40-1 (12180401gly40)

description:
Comparison of cDNA made from mRNA of deletion set strain W3031A grown with glycine to cDNA made from mRNA from the same strain harvested 40 min after resuspension in minimal medium lacking glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Quantarray 1.0 software (GSI Lumonics). Expression ratios were normalized and median centered for the Quantarray data files by Quantarray Data Handler 3.0. This software also applied filters for background and spot similarity so that low intensity spots at or near background levels and spots that differed more than 2-fold in their expression ratio were eliminated. Spot intensity and background data came from the Quantarray data files and the ratios of intensities at the two wavelengths were from the Quantarray Data Handler. The latter data were background subtracted normalized and averaged. Data points that are blank were removed by the background and spot similarity filters.

source_name: Time course t=0 sample of strain W3031A rown on minimal + 10 mM glycine

source_name: Time course 40 in sample of strain W3031A after cells were filtered and resuspended in minimal -glycine


title: -Gly80gcn4 (12251984gcn4Gly80)

description:
Comparison of cDNA made from mRNA of deletion set strain Y00249 grown with glycine to cDNA made from mRNA from the same strain harvested 80 min after resuspension in minimal medium lacking glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.

source_name: Time course t=0 sample of strain Y00249 grown on minimal + 10 mM glycine

source_name: Time course 80 min sample of strain Y00249 after cells were filtered and resuspended in minimal -glycine


title: +Gly80 (203776)

description:
Comparison of cDNA made from mRNA of deletion set strain W3031A grown on minimal medium lacking glycine to cDNA made from mRNA from the same strain harvested 80 min after addition of 10 mM glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Quantarray 1.0 software (GSI Lumonics). Expression ratios were normalized and median centered for the Quantarray data files by Quantarray Data Handler 3.0. This software also applied filters for background and spot similarity so that low intensity spots at or near background levels and spots that differed more than 2-fold in their expression ratio were eliminated. Spot intensity and background data came from the Quantarray data files and the ratios of intensities at the two wavelengths were from the Quantarray Data Handler. The latter data were background subtracted normalized and averaged. Data points that are blank were removed by the background and spot similarity filters.

source_name: Time course 80 min sample of strain W3031A after addition of 10 mM glycine


title: SSbas1-1 (12264864BAS1-GLY-SteadyST)


title: +Gly40 (202366GLY40)

description:
Comparison of cDNA made from mRNA of deletion set strain W3031A grown on minimal medium lacking glycine to cDNA made from mRNA from the same strain harvested 40 min after addition of 10 mM glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Quantarray 1.0 software (GSI Lumonics). Expression ratios were normalized and median centered for the Quantarray data files by Quantarray Data Handler 3.0. This software also applied filters for background and spot similarity so that low intensity spots at or near background levels and spots that differed more than 2-fold in their expression ratio were eliminated. Spot intensity and background data came from the Quantarray data files and the ratios of intensities at the two wavelengths were from the Quantarray Data Handler. The latter data were background subtracted normalized and averaged. Data points that are blank were removed by the background and spot similarity filters.

source_name: Time course 40 min sample of strain W3031A after addition of 10 mM glycine


title: -Gly20-4 (12172712gly0)

description:
Comparison of cDNA made from mRNA of deletion set strain W3031A grown with glycine to cDNA made from mRNA from the same strain harvested 20 min after resuspension in minimal medium lacking glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.

source_name: Time course t=0 sample of strain W3031A grown on minimal + 10 mM glycine

source_name: Time course 20 min sample of strain W3031A after cells were filtered and resuspended in minimal -glycine


title: SSWT3 (1226632wtzap1ss)

description:
Comparison of cDNA made from mRNA of deletion set strain grown with or without glycine during stead state grwoth to early log phase.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.


title: SSWT-1 (12264685deltaWT-GLY-SteadyST)

description:
Comparison of cDNA made from mRNA of deletion set strain grown with or without glycine during steady state growth to early log phase.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.


title: 020112-6

city: Stockholm

first: Hui

last: Gao

country: Sweden

institute: Karolinska institute

description:
See the description in the GSE
Lot batch = 2002703

source_name: Soleus muscles from male BERKO ( estrogen receptor beta knockout).


title: 020112-5

description:
See the desription in the GSE
Lot batch = 2002703

source_name: Soleus muscles from male wildtype C57BL/6


title: 020109-4

source_name: Soleus muscles from male BERKO ( estrogen receptor beta knockout)


title: 020109-3


title: SSgcn4-1 (12265029deltaGCN-Gly steady Dec07,02)

description:
Comparison of cDNA made from mRNA of deletion set strain Y00249 grown with or without glycine during steady state growth to early log phase.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.

source_name: Yeast strain Y00249 grown on minimal +10 mM glycine

source_name: Yeast strain Y00249 grown on minimal


title: 020112-2


title: -Gly40-3 (12172719Gly40)

description:
Comparison of cDNA made from mRNA of deletion set strain W3031A grown with glycine to cDNA made from mRNA from the same strain harvested 40 min after resuspension in minimal medium lacking glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.

source_name: Time course 40 min sample of strain W3031A after cells were filtered and resuspended in minimal -glycine


title: Wild type IFN-gamma 2 h

status: Public on Jul 16 2004

city: Los Angeles

first: Bin

last: Liu

institute: UCLA

description: Bone marrow-derived macrophages (BMMs) from wild type mice were treated with IFN-gamma (10 ng/ml) for 2 h. Total RNA was prepared with RNA-STAT60 (TEL-TEST) and purified with the RNeasy kit (Qiagen). Double stranded complementary DNA was synthesized from 20 ug of total RNA according to Affymetrix methodology, and purified with Phase Lock Gels (Eppendorf). Biotin-labeled RNA was synthesized with the BioArray High Yield RNA Transcript Labeling Kit (Enzo). Samples were cleaned, fragmentated and hybridized to murine genome (MGU74Av2) Genechips (Affymetrix) as instructed. GeneChips were stained with phycoerythrin-streptavidin (Molecular Probes) and scanned with a GeneChip scanner (Affymetrix). Data were analyzed with the GeneSpring software.

source_name: BMM


title: Wild type IFN-gamma 4 h

description: Bone marrow-derived macrophages (BMMs) from wild type mice were treated with IFN-gamma (10 ng/ml) for 4 h. Total RNA was prepared with RNA-STAT60 (TEL-TEST) and purified with the RNeasy kit (Qiagen). Double stranded complementary DNA was synthesized from 20 ug of total RNA according to Affymetrix methodology, and purified with Phase Lock Gels (Eppendorf). Biotin-labeled RNA was synthesized with the BioArray High Yield RNA Transcript Labeling Kit (Enzo). Samples were cleaned, fragmentated and hybridized to murine genome (MGU74Av2) Genechips (Affymetrix) as instructed. GeneChips were stained with phycoerythrin-streptavidin (Molecular Probes) and scanned with a GeneChip scanner (Affymetrix). Data were analyzed with the GeneSpring software.


title: 020112-1


title: SSshm2-1 (12252029shm2ss)

description:
Comparison of cDNA made from mRNA of deletion set strain Y02669  grown with or without glycine during steady state growth to early log phase.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.

source_name: Yeast strain Y02669 grown on minimal +10 mM glycine

source_name: Yeast strain Y02669 grown on minimal


title: -Gly80-5 (12180330Gly80mohan)

description:
Comparison of cDNA made from mRNA of deletion set strain W3031A grown with glycine to cDNA made from mRNA from the same strain harvested 80 min after resuspension in minimal medium lacking glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.

source_name: Time course 80 min sample of strain W3031A after cells were filtered and resuspended in minimal -glycine


title: -Gly20-3 (12192129gly20)


title: Wild type IFN-beta 2 h

description: Bone marrow-derived macrophages (BMMs) from wild type mice were treated with IFN-beta (500 U/ml) for 2 h. Total RNA was prepared with RNA-STAT60 (TEL-TEST) and purified with the RNeasy kit (Qiagen). Double stranded complementary DNA was synthesized from 20 ug of total RNA according to Affymetrix methodology, and purified with Phase Lock Gels (Eppendorf). Biotin-labeled RNA was synthesized with the BioArray High Yield RNA Transcript Labeling Kit (Enzo). Samples were cleaned, fragmentated and hybridized to murine genome (MGU74Av2) Genechips (Affymetrix) as instructed. GeneChips were stained with phycoerythrin-streptavidin (Molecular Probes) and scanned with a GeneChip scanner (Affymetrix). Data were analyzed with the GeneSpring software.


title: Pias1 null IFN-beta 4 h

description: Bone marrow-derived macrophages (BMMs) from Pias1 null mice were treated with IFN-beta (500 U/ml)  for 4 h. Total RNA was prepared with RNA-STAT60 (TEL-TEST) and purified with the RNeasy kit (Qiagen). Double stranded complementary DNA was synthesized from 20 ug of total RNA according to Affymetrix methodology, and purified with Phase Lock Gels (Eppendorf). Biotin-labeled RNA was synthesized with the BioArray High Yield RNA Transcript Labeling Kit (Enzo). Samples were cleaned, fragmentated and hybridized to murine genome (MGU74Av2) Genechips (Affymetrix) as instructed. GeneChips were stained with phycoerythrin-streptavidin (Molecular Probes) and scanned with a GeneChip scanner (Affymetrix). Data were analyzed with the GeneSpring software.


title: Pias1 null untreated

description: Bone marrow-derived macrophages (BMMs) from Pias1 null mice were untreated. Total RNA was prepared with RNA-STAT60 (TEL-TEST) and purified with the RNeasy kit (Qiagen). Double stranded complementary DNA was synthesized from 20 ug of total RNA according to Affymetrix methodology, and purified with Phase Lock Gels (Eppendorf). Biotin-labeled RNA was synthesized with the BioArray High Yield RNA Transcript Labeling Kit (Enzo). Samples were cleaned, fragmentated and hybridized to murine genome (MGU74Av2) Genechips (Affymetrix) as instructed. GeneChips were stained with phycoerythrin-streptavidin (Molecular Probes) and scanned with a GeneChip scanner (Affymetrix). Data were analyzed with the GeneSpring software.


title: Wild type IFN-beta 4 h

description: Bone marrow-derived macrophages (BMMs) from wild type mice were treated with IFN-beta (500 U/ml) for 4 h. Total RNA was prepared with RNA-STAT60 (TEL-TEST) and purified with the RNeasy kit (Qiagen). Double stranded complementary DNA was synthesized from 20 ug of total RNA according to Affymetrix methodology, and purified with Phase Lock Gels (Eppendorf). Biotin-labeled RNA was synthesized with the BioArray High Yield RNA Transcript Labeling Kit (Enzo). Samples were cleaned, fragmentated and hybridized to murine genome (MGU74Av2) Genechips (Affymetrix) as instructed. GeneChips were stained with phycoerythrin-streptavidin (Molecular Probes) and scanned with a GeneChip scanner (Affymetrix). Data were analyzed with the GeneSpring software.


title: Wild type untreated

description: Bone marrow-derived macrophages (BMMs) from wild type mice were untreated. Total RNA was prepared with RNA-STAT60 (TEL-TEST) and purified with the RNeasy kit (Qiagen). Double stranded complementary DNA was synthesized from 20 ug of total RNA according to Affymetrix methodology, and purified with Phase Lock Gels (Eppendorf). Biotin-labeled RNA was synthesized with the BioArray High Yield RNA Transcript Labeling Kit (Enzo). Samples were cleaned, fragmentated and hybridized to murine genome (MGU74Av2) Genechips (Affymetrix) as instructed. GeneChips were stained with phycoerythrin-streptavidin (Molecular Probes) and scanned with a GeneChip scanner (Affymetrix). Data were analyzed with the GeneSpring software.


title: Pias1 null IFN-gamma 4 h

description: Bone marrow-derived macrophages (BMMs) from Pias1 null mice were treated with IFN-gamma (10 ng/ml)  for 4 h. Total RNA was prepared with RNA-STAT60 (TEL-TEST) and purified with the RNeasy kit (Qiagen). Double stranded complementary DNA was synthesized from 20 ug of total RNA according to Affymetrix methodology, and purified with Phase Lock Gels (Eppendorf). Biotin-labeled RNA was synthesized with the BioArray High Yield RNA Transcript Labeling Kit (Enzo). Samples were cleaned, fragmentated and hybridized to murine genome (MGU74Av2) Genechips (Affymetrix) as instructed. GeneChips were stained with phycoerythrin-streptavidin (Molecular Probes) and scanned with a GeneChip scanner (Affymetrix). Data were analyzed with the GeneSpring software.


title: Sedentary-21

status: Public on Jul 12 2004

city: Copenhagen

first: Claes

middle: C

last: Strøm

address: 20, Juliane Mariesvej

department: Department of Medicine B

country: Denmark

institute: H:S Rigshospitalet, University of Copenhagen Medical School

description:
left ventricle from sedentary animals
Keywords = heart, left ventricle, hypertrophy

source_name: heart left ventricle


title: AG 10h2

status: Public on Jul 15 2004

city: Pasadena

first: Frank

last: Wellmer

address: 1200 E. California Blvd.

department: Biology 156-29

institute: California Institute of Technology

description: Dye-labeled RNA samples derived from dexamethasone- or mock-treated inflorescences of ag-1;35S::AG-GR plants were co-hybridized to a cDNA array enriched for flower-specific transcripts.

source_name: Inflorescences of ag-1;35S::AG-GR plants treated for 10 hours with a control solution

source_name: Inflorescences of ag-1;35S::AG-GR plants treated for 10 hours with a dexamethasone-containing solution


title: AG 8h2

source_name: Inflorescences of ag-1;35S::AG-GR plants treated for 8 hours with a control solution

source_name: Inflorescences of ag-1;35S::AG-GR plants treated for 8 hours with a dexamethasone-containing solution


title: AG 8h1


title: AG 16h1

source_name: Inflorescences of ag-1;35S::AG-GR plants treated for 16 hours with a dexamethasone-containing solution

source_name: Inflorescences of ag-1;35S::AG-GR plants treated for 16 hours with a control solution


title: Sedentary-13


title: Sedentary-23


title: Sedentary-24


title: AG 10h1


title: Pias1 null IFN-gamma 2 h

description: Bone marrow-derived macrophages (BMMs) from Pias1 null mice were treated with IFN-gamma (10 ng/ml)  for 2 h. Total RNA was prepared with RNA-STAT60 (TEL-TEST) and purified with the RNeasy kit (Qiagen). Double stranded complementary DNA was synthesized from 20 ug of total RNA according to Affymetrix methodology, and purified with Phase Lock Gels (Eppendorf). Biotin-labeled RNA was synthesized with the BioArray High Yield RNA Transcript Labeling Kit (Enzo). Samples were cleaned, fragmentated and hybridized to murine genome (MGU74Av2) Genechips (Affymetrix) as instructed. GeneChips were stained with phycoerythrin-streptavidin (Molecular Probes) and scanned with a GeneChip scanner (Affymetrix). Data were analyzed with the GeneSpring software.


title: AG 4h1

source_name: Inflorescences of ag-1;35S::AG-GR plants treated for 4 hours with a dexamethasone-containing solution

source_name: Inflorescences of ag-1;35S::AG-GR plants treated for 4 hours with a control solution


title: AG 16h2


title: Pias1 null IFN-beta 2 h

description: Bone marrow-derived macrophages (BMMs) from Pias1 null mice were treated with IFN-beta (500 U/ml)  for 2h. Total RNA was prepared with RNA-STAT60 (TEL-TEST) and purified with the RNeasy kit (Qiagen). Double stranded complementary DNA was synthesized from 20 ug of total RNA according to Affymetrix methodology, and purified with Phase Lock Gels (Eppendorf). Biotin-labeled RNA was synthesized with the BioArray High Yield RNA Transcript Labeling Kit (Enzo). Samples were cleaned, fragmentated and hybridized to murine genome (MGU74Av2) Genechips (Affymetrix) as instructed. GeneChips were stained with phycoerythrin-streptavidin (Molecular Probes) and scanned with a GeneChip scanner (Affymetrix). Data were analyzed with the GeneSpring software.


title: Sedentary-17


title: AG 0h1

source_name: Inflorescences of ag-1;35S::AG-GR plants treated for 0 hours with a dexamethasone-containing solution

source_name: Inflorescences of ag-1;35S::AG-GR plants treated for 0 hours with a control solution


title: Sedentary-16


title: Exercised-5

description:
left ventricle after 7 weeks of treadmill running
Keywords = heart, left ventricle, hypertrophy


title: Exercised-7


title: Exercised-1


title: Exercised-4


title: Exercised-8


title: AG 0h2


title: AG 4h2


title: 02-k3w5

status: Public on Jul 11 2004

city: Palo Alto

first: Wen-Jun

last: Shen

address: 3801 Miranda Avenue

department: Medicine

institute: Stanford University

description: Microarray analysis of gene expression in islets of HSL-/- mice and wt mice using PancChip2.0

source_name: Islets from wild type mice

source_name: Islets from HSL-/- mice


title: Exercised-9


title: Low shear stress ChipA

status: Public on Jul 07 2004

city: Göteborg

first: Per-Arne

last: Svensson

institute: Internal Medicine

description: Human vessels (umbilical veins) were exposed to low shear stress for 6 h. Endotelial cells (HUVEC) were isolated. RNA from 16 pooled experiments were analysed.

source_name: HUVEC


title: sok WT acidic scan high

city: Paris

first: Frederic

last: Devaux

country: France

institute: Ecole Normale Superieure

description: Ratios were normalised by lowess using the varan software. Artefactual, saturating and low signal spots were excluded from the analysis.

source_name: Wild type colonies in acidic phase

source_name: sok2 deleted colonies in acidic phase


title: sok3 WT3 scan high

description:
Ratios were normalised by lowess using the Varan software. Artefactual, saturating and low signals spots were excluded from the analysis.
Keywords = yeast
Keywords = colonies
Keywords = development

source_name: Wild type colonies in phase 3

source_name: sok2 deleted colonies in phase 3


title: transgenic plants (AtMYB23SRDX) #41

city: Tsukuba

first: Kyoko

last: Matsui

department: Gene Function Research Center

country: Japan

institute: National Institute of Advanced Industrial Science and Technology (AIST)

description: RNA was prepared from 2-week-old Arabidopsis ecotype Col-0 expressing 35S::AtMYB23SRDX

source_name: rosette leaves


title: sok9 WT12 scan high

source_name: Wild type colonies in phase 12

source_name: sok2 deleted colonies in phase 9


title: sok1WT1 scan high

source_name: Wild type colonies in phase 1

source_name: sok2 deleted colonies in phase 1


title: 10-k5w3

source_name: islets from HSL-/- mice

source_name: islets from wild type mice


title: 09-k3w5


title: sok WT alkali scan high

source_name: Wild type colonies in alkali phase

source_name: sok2 deleted colonies in alkali phase


title: High shear stress ChipA

description: Human vessels (umbilical veins) were exposed to high shear stress for 6 h. Endotelial cells (HUVEC) were isolated. RNA from 16 pooled experiments were analysed.


title: Low shear stress ChipB


title: 05-k3w5

description: Microarray analysis of gene expression in islets of HSL-/- mice and wt mice using PAncChip2.0

source_name: islets of WT mice

source_name: islets of HSL-/- mice


title: 06-k5w3

source_name: islets from wild tpe mice


title: Normal pressure ChipA

description: Human vessels (umbilical veins) were exposed to normal intraluminal pressure for 6 h. Endotelial cells (HUVEC) were isolated. RNA from 16 pooled experiments were analysed.

source_name: HUVEC


title: transgenic plant (AtMYB23SRDX) #45


title: High shear stress ChipB


title: Normal pressure ChipB


title: wild-type plant

description: RNA was prepared from 2-week-old Arabidopsis ecotype Col-0.

source_name: rosette leaves from wild-type plants


title: 08-k5w3

source_name: Islets from HSL-/- mice

source_name: Islets from wild type mice


title: 07-k3w5


title: High pressure ChipB

description: Human vessels (umbilical veins) were exposed to high intraluminal pressure for 6 h. Endotelial cells (HUVEC) were isolated. RNA from 16 pooled experiments were analysed.


title: 04-k5w3

description:
Microarray analysis of gene expression in islets of HSL -/- mice and wt mice using PAncChip2.0
Keywords = islet of HSL -/- mice

source_name: islet of HSL-/- mice

source_name: islet of WT


title: 8-Cell 3 MOE430B

status: Public on Jul 06 2004

city: Philadelphia

first: Richard

middle: M.

last: Schultz

state: PA

address: 415 S. University Ave.

department: Biology

institute: University of Pennsylvania

description:
Total RNA from mouse 8-cell embryo were subjected to two rounds of IVT amplification.
Keywords = preimplantation mouse embryo development

source_name: preimplantation mouse embryo


title: 1-Cell 4 MOE430B

description:
Total RNA from mouse 1-cell embryo were subjected to two rounds of IVT amplification.
Keywords = preimplantation mouse embryo development


title: Blastocyst 2 MOE430B

description:
Total RNA from mouse blastocyst embryo were subjected to two rounds of IVT amplification.
Keywords = preimplantation mouse embryo development


title: Blastocyst 4 MOE430B


title: 1-Cell 1 MOE430B


title: High pressure ChipA


title: 2-Cell 3 MOE430B

description:
Total RNA from mouse 2-cell embryo were subjected to two rounds of IVT amplification.
Keywords = preimplantation mouse embryo development


title: 2-Cell 1 MOE430B


title: Oocyte 3 MOE430B

description:
Total RNA from mouse oocyte were subjected to two rounds of IVT amplification.
Keywords = preimplantation mouse embryo development


title: 1-Cell 3 MOE430B


title: 8-Cell 4 MOE430B


title: 1-Cell 2 MOE430B


title: 8-Cell 2 MOE430B


title: Oocyte 4 MOE430B


title: Oocyte 1 MOE430B


title: Oocyte 2 MOE430B


title: Blastocyst 3 MOE430B


title: Blastocyst 3 MOE430A


title: Blastocyst 1 MOE430B


title: Blastocyst 1 MOE430A


title: 2-Cell 4 MOE430B


title: Blastocyst 4 MOE430A


title: Blastocyst 2 MOE430A


title: 8-Cell 1 MOE430B


title: 2-Cell 2 MOE430B


title: Blastocyst 2

description:
Total RNA from mouse blastocyst were subjected to two rounds of IVT amplification.
Keywords = preimplantation mouse embryo development


title: 8-Cell 4

description:
Total RNA from mouse 8-cell were subjected to two rounds of IVT amplification.
Keywords = preimplantation mouse embryo development


title: Blastocyst 3


title: 8-Cell 3 MOE430A


title: 8-Cell 4 MOE430A


title: 8-Cell 2 MOE430A


title: Blastocyst 1


title: 8-Cell 2


title: 8-Cell 3


title: 2-Cell 4 MOE430A


title: 2-Cell 3 MOE430A


title: 2-Cell 1 MOE430A


title: 8-Cell 1 MOE430A


title: 2-Cell 2 MOE430A


title: 2-Cell 2


title: 2-Cell 1


title: 8-Cell 1


title: 1-Cell 2


title: 1-Cell 1 MOE430A


title: 1-Cell 1


title: 1-Cell 3


title: 1-Cell 4 MOE430A


title: Oocyte 3


title: 2-Cell 3


title: 1-Cell 3 MOE430A


title: Oocyte 1 MOE430A


title: Oocyte 2 MOE430A


title: 1-Cell 2 MOE430A


title: Oocyte 4


title: Oocyte 1


title: Oocyte 2


title: Oocyte 4 MOE430A


title: GadLBPos a

status: Public on Jul 04 2004

city: Duarte

first: Paul

last: Salvaterra

address: 1500 E. Duarte Rd.

department: Stem Cell and Developmental Biology

institute: Beckman Research Institute of the City of Hope

description: Positive FACS fraction from Drosophila Larval Brain/Ventral Nerve Cord FACS sorted for Gad1 Expressing neurons.  RFP (dsRed1)  labeled by 2.1 kb glutamic acid decarboxylase 1 promoter-RFP direct fusion

organism: Drosophila melanogaster

source_name: Drosophila Larval Brain/Ventral Nerve Cord Gad1 Expressing Neurons


title: GadECPos b

description: PositiveFACS fraction from Drosophila Embryo Cell Culture FACS sorted for Gad1 Expressing neurons.  RFP (dsRed1)  labeled by 2.1 kb glutamic acid decarboxylase 1 promoter-RFP direct fusion

source_name: Drosophila Embryo Cell Culture Gad1 expressing Neurons


title: Oocyte 3 MOE430A


title: GadECPos c

source_name: Drosophila Embryo Cell Culture Gad1 Expressing Neurons


title: GadLBNeg a

description: Negative FACS fraction from Drosophila Larval Brain/Ventral Nerve Cord FACS sorted for Gad1 Expressing neurons.  RFP (dsRed1)  labeled by 2.1 kb glutamic acid decarboxylase 1 promoter-RFP direct fusion


title: GadECNeg b

description: Negative FACS fraction from Drosophila Embryo Cell Culture FACS sorted for Gad1 Expressing neurons.  RFP (dsRed1)  labeled by 2.1 kb glutamic acid decarboxylase 1 promoter-RFP direct fusion

source_name: Drosophila Embryo Cell Culture


title: GadECPos d


title: ChaECPos b

description: Drosophila Embryo Cell Cultures FACS sorted for cholinergic neurons.  GFP labeled by 7.4 kb Cha-Gal4:UAS-GFP

source_name: Drosophila Embryo Cell Culture Cholinergic Neurons


title: ChaLBPos a

description: Drosophila Larval Brain dissociated and FACS sorted for cholinergic neurons.  GFP labeled by 7.4 kb Cha-Gal4:UAS-GFP

source_name: Drosophila larval brain cholinergic neurons


title: GadECNeg a


title: pPNs-20B

status: Public on Jul 03 2004

last: Gomelsky

description:
PpsR-extra copy strain derived from R.sphaeroides 2.4.1. Growth at 20% O2, 1% CO2, 79% N2 in the dark. Cells are collected at OD 0.18. RNA was isolated with bead beater + RNeasy kits
Sample_series_id: GSE1515

source_name: Rhodobacter sphaeroides 2.4.1 (pPNs)


title: ChaECPos c


title: ChaECPos d

source_name: Drosophila Embryo Culture Cholinergic Neurons


title: ChaECPos a

source_name: Drosophila Embryo Cell Culture, Cholinergic Neurons


title: 20C

description:
Growth at 20% O2, 1% CO2, 79% N2 in the dark. Cells are collected at OD 0.18. RNA was isolated with bead beater + RNeasy kits
Sample_series_id: GSE1515

source_name: Rhodobacter sphaeroides 2.4.1


title: pPNs-20A


title: pPNs-20C


title: 20A


title: GadECPos a


title: ChaECNeg b

description: 3-5 day Drosophila Embryo Culture labeled with GFP expression in Cholinergic neurons.  Negative fraction from FACS sorting


title: 20B


title: App11-20A

description:
App11 (AppA-null) strain derived from R.sphaeroides 2.4.1. Growth at 20% O2, 1% CO2, 79% N2 in the dark. Cells are collected at OD 0.18. RNA was isolated with bead beater + RNeasy kits
Sample_series_id: GSE1515

source_name: Rhodobacter sphaeroides App11