title: Hour 6 No Yeast (NY)

description:
Hour 6 No Yeast Treatment (NY).

Larvae were reared on standard diet until early third instar, at which time they were washed and transferred to standard diet lacking yeast.  The animals remained on this diet until four days after emergence, when one group of adults was switched back to standard diet containing yeast (group Y) while another remained on the diet lacking yeast (group NY).  Flies from both groups were killed every hour for the next twelve hours, creating 24 samples across the two treatments.  In addition, four samples of flies were killed just before the start of the time course and used as baseline replicates for the no yeast (NY) and yeast (Y) treatments.  Baseline replicates were temporally ordered as noted for change-point analysis.  No yeast (NY) treatment samples at hours four and eight did not yield microarray data due to insufficient RNA.

Total RNA was extracted from whole animals using Trizol (Invitrogen).  Sample processing and microarray hybridization/scanning were performed at the Brown University Center for Genetics and Genomics according to Affymetrix protocol.  Microarray data was normalized by DNA-Chip Analyzer  (dChip, http://www.dchip.org), which utilizes an invariant difference selection (IDS) algorithm to construct a normalization relation.
Keywords = insulin, diet, nutrition


title: Hour 6 Yeast (Y)

status: Public on Dec 19 2003

type: RNA

city: Providence

first: Boris

last: Gershman

state: RI

address: Attn: Marc Tatar, Box G-W

department: Ecology and Evolutionary Biology

country: USA

institute: Brown University

description:
Hour 6 Yeast Treatment (Y).

Larvae were reared on standard diet until early third instar, at which time they were washed and transferred to standard diet lacking yeast.  The animals remained on this diet until four days after emergence, when one group of adults was switched back to standard diet containing yeast (group Y) while another remained on the diet lacking yeast (group NY).  Flies from both groups were killed every hour for the next twelve hours, creating 24 samples across the two treatments.  In addition, four samples of flies were killed just before the start of the time course and used as baseline replicates for the no yeast (NY) and yeast (Y) treatments.  Baseline replicates were temporally ordered as noted for change-point analysis.  No yeast (NY) treatment samples at hours four and eight did not yield microarray data due to insufficient RNA.

Total RNA was extracted from whole animals using Trizol (Invitrogen).  Sample processing and microarray hybridization/scanning were performed at the Brown University Center for Genetics and Genomics according to Affymetrix protocol.  Microarray data was normalized by DNA-Chip Analyzer  (dChip, http://www.dchip.org), which utilizes an invariant difference selection (IDS) algorithm to construct a normalization relation.
Keywords = insulin, diet, nutrition

molecule: total RNA

organism: Drosophila melanogaster

source_name: Whole animal (Drosophila)


title: Brain (cerebral cortex) [JunctionChip 5 of 5]

city: Kirkland

first: John

last: Castle

state: WA

department: Informatics

institute: Merck

description:
Samples were purchased from Clontech as mRNA.
Hybridization material was generated through a random-priming amplification procedure (RP-AMP) using primers with a random sequence at the 3' end and a fixed motif at the 5' end.  shDNP256 (first strand synthesis): 5'- TAG ATG CTG TTG NNN NNN NNN -3'  shT7N9 (second strand synthesis): 5'- ACT ATA GGG AGA NNN NNN NNN -3'  1.5  g of mRNA was reverse-transcribed with Superscript II and the DP256 random primer for 20 minutes at 42 C (10 mM DTT, 50 mM Tris-HCl pH 8.3, 75 mM KCl, 8 mM MgCl2, 0.5 mM dNTPs, 5 U/ l Superscript II). The RNA was  degraded with the addition of 20 l volume of 0.5N sodium hydroxide and 0.25 M EDTA for 20 minutes at 65 C.  The single stranded cDNA was purified using a commercial kit (Qiagen Qiaquick).
The resulting product of single stranded cDNA was placed in its entirety in a second strand reaction. Second strand synthesis reactions utilized shT7N9 random primer and the Klenow fragment of DNA polymerase utilizing standard reaction conditions (37 C for 60 minutes, 0.2 mM DTT, 2.1 mM Tris-HCl pH 7.9, 2.1 mM MgCl2, 10.7 mM NaCl, 1.07 mM dNTPs, 0.1U/ l Klenow), followed by another Qiaquick purification.  Multiple polymerase chain reactions were run using 0.15  g of double stranded DNA and standard reaction conditions.  Amplification was achieved using 10 cycles of PCR with the DP256 and T7 primers (20 mM Tris-HCl pH 8.4, 50 mM KCl, 0.01 mM dNTPs, 1.5 mM MgCl2, 0.01 U/ l Taq Polymerase)  DP256: 5'- GTT CGA GAC CTC TAG ATG CTG TTG -3'  T7: 5'- AA TTA ATA CGA CTC ACT ATA GGG AGA -3'  followed by Qiaquick purification.
Further amplification was achieved using in vitro transcription reactions with X0.5  g dsDNA and T7 RNA Polymerase (7.5 mM DTT, 40 mM Tris-HCl pH 7.5, 14.25 mM MgCl2, 10 mM NaCl, 2 mM Spermidine, 125 U/ml RNAguard, 2.5 mM dNTPs, 15 U/ml IPPase, 25kU/ml T7 Polymerase) for 16 hours at 42 C. The cRNA was purified (RNeasy) and  reverse transcribed using Superscript and random 9-mers and amino-allyl dUTP (42 C for 20 minutes, 10 mM DTT, 50mM Tris-HCl pH 8.3, 75 mM KCl, 8 mM MgCl2, 0.5 mM dNTPs, 0.5 mM aa-dUTP, 5 U/ l Superscript II).
The cDNA for each channel was covalently coupled separately with Cy5 and Cy3 monoreactive fluors, respectively, in 1M sodium bicarbonate, pH 9.0, followed by quenching with 4.0 M hydroxylamine. The Cy5 and Cy3 labelled cDNAs were purified with a QIAquick PCR purification kit and the percentage dye incorporation and total cDNA yield was determined spectrophotometrically. Cy5 and Cy3 labelled cDNAs were combined and added to 2 mls 30% formamide with Herring Sperm DNA for hybridization to the microarray.
Further details can be found in Castle et al., Genome Biol 2003;4(10):R66, LINK_PRE:"http://genomebiology.com/2003/4/10/R66",  Roberts CJ et al., Science 2000, 287:873-880, and Johnson et al., submitted to Science, 2003.
Keywords = junction alternate splicing oligonucleotide

organism: Homo sapiens

source_name: Brain (cerebral cortex)


title: Lymphoma (Burkitts Raji) [JunctionChip 5 of 5]

source_name: Lymphoma (Burkitts Raji)


title: Uterus (corpus) [JunctionChip 5 of 5]

source_name: Uterus (corpus)


title: Hour 4 Yeast (Y)

description:
Hour 4 Yeast Treatment (Y).

Larvae were reared on standard diet until early third instar, at which time they were washed and transferred to standard diet lacking yeast.  The animals remained on this diet until four days after emergence, when one group of adults was switched back to standard diet containing yeast (group Y) while another remained on the diet lacking yeast (group NY).  Flies from both groups were killed every hour for the next twelve hours, creating 24 samples across the two treatments.  In addition, four samples of flies were killed just before the start of the time course and used as baseline replicates for the no yeast (NY) and yeast (Y) treatments.  Baseline replicates were temporally ordered as noted for change-point analysis.  No yeast (NY) treatment samples at hours four and eight did not yield microarray data due to insufficient RNA.

Total RNA was extracted from whole animals using Trizol (Invitrogen).  Sample processing and microarray hybridization/scanning were performed at the Brown University Center for Genetics and Genomics according to Affymetrix protocol.  Microarray data was normalized by DNA-Chip Analyzer  (dChip, http://www.dchip.org), which utilizes an invariant difference selection (IDS) algorithm to construct a normalization relation.
Keywords = insulin, diet, nutrition


title: Hour 2 No Yeast (NY)

description:
Hour 2 No Yeast Treatment (NY).

Larvae were reared on standard diet until early third instar, at which time they were washed and transferred to standard diet lacking yeast.  The animals remained on this diet until four days after emergence, when one group of adults was switched back to standard diet containing yeast (group Y) while another remained on the diet lacking yeast (group NY).  Flies from both groups were killed every hour for the next twelve hours, creating 24 samples across the two treatments.  In addition, four samples of flies were killed just before the start of the time course and used as baseline replicates for the no yeast (NY) and yeast (Y) treatments.  Baseline replicates were temporally ordered as noted for change-point analysis.  No yeast (NY) treatment samples at hours four and eight did not yield microarray data due to insufficient RNA.

Total RNA was extracted from whole animals using Trizol (Invitrogen).  Sample processing and microarray hybridization/scanning were performed at the Brown University Center for Genetics and Genomics according to Affymetrix protocol.  Microarray data was normalized by DNA-Chip Analyzer  (dChip, http://www.dchip.org), which utilizes an invariant difference selection (IDS) algorithm to construct a normalization relation.
Keywords = insulin, diet, nutrition


title: Hour 5 No Yeast (NY)

description:
Hour 5 No Yeast Treatment (NY).

Larvae were reared on standard diet until early third instar, at which time they were washed and transferred to standard diet lacking yeast.  The animals remained on this diet until four days after emergence, when one group of adults was switched back to standard diet containing yeast (group Y) while another remained on the diet lacking yeast (group NY).  Flies from both groups were killed every hour for the next twelve hours, creating 24 samples across the two treatments.  In addition, four samples of flies were killed just before the start of the time course and used as baseline replicates for the no yeast (NY) and yeast (Y) treatments.  Baseline replicates were temporally ordered as noted for change-point analysis.  No yeast (NY) treatment samples at hours four and eight did not yield microarray data due to insufficient RNA.

Total RNA was extracted from whole animals using Trizol (Invitrogen).  Sample processing and microarray hybridization/scanning were performed at the Brown University Center for Genetics and Genomics according to Affymetrix protocol.  Microarray data was normalized by DNA-Chip Analyzer  (dChip, http://www.dchip.org), which utilizes an invariant difference selection (IDS) algorithm to construct a normalization relation.
Keywords = insulin, diet, nutrition


title: Spinal cord [JunctionChip 5 of 5]

source_name: Spinal cord


title: Hour -1

description:
Baseline replicate, ordered as hour -1.

Larvae were reared on standard diet until early third instar, at which time they were washed and transferred to standard diet lacking yeast.  The animals remained on this diet until four days after emergence, when one group of adults was switched back to standard diet containing yeast (group Y) while another remained on the diet lacking yeast (group NY).  Flies from both groups were killed every hour for the next twelve hours, creating 24 samples across the two treatments.  In addition, four samples of flies were killed just before the start of the time course and used as baseline replicates for the no yeast (NY) and yeast (Y) treatments.  Baseline replicates were temporally ordered as noted for change-point analysis.  No yeast (NY) treatment samples at hours four and eight did not yield microarray data due to insufficient RNA.

Total RNA was extracted from whole animals using Trizol (Invitrogen).  Sample processing and microarray hybridization/scanning were performed at the Brown University Center for Genetics and Genomics according to Affymetrix protocol.  Microarray data was normalized by DNA-Chip Analyzer  (dChip, http://www.dchip.org), which utilizes an invariant difference selection (IDS) algorithm to construct a normalization relation.
Keywords = insulin, diet, nutrition


title: Bone marrow [JunctionChip 5 of 5]

source_name: Bone marrow


title: Hour 1 No Yeast (NY)

description:
Hour 1 No Yeast (NY).

Larvae were reared on standard diet until early third instar, at which time they were washed and transferred to standard diet lacking yeast.  The animals remained on this diet until four days after emergence, when one group of adults was switched back to standard diet containing yeast (group Y) while another remained on the diet lacking yeast (group NY).  Flies from both groups were killed every hour for the next twelve hours, creating 24 samples across the two treatments.  In addition, four samples of flies were killed just before the start of the time course and used as baseline replicates for the no yeast (NY) and yeast (Y) treatments.  Baseline replicates were temporally ordered as noted for change-point analysis.  No yeast (NY) treatment samples at hours four and eight did not yield microarray data due to insufficient RNA.

Total RNA was extracted from whole animals using Trizol (Invitrogen).  Sample processing and microarray hybridization/scanning were performed at the Brown University Center for Genetics and Genomics according to Affymetrix protocol.  Microarray data was normalized by DNA-Chip Analyzer  (dChip, http://www.dchip.org), which utilizes an invariant difference selection (IDS) algorithm to construct a normalization relation.
Keywords = insulin, diet, nutrition


title: Hour 3 Yeast (Y)

description:
Hour 3 Yeast Treatment (Y).

Larvae were reared on standard diet until early third instar, at which time they were washed and transferred to standard diet lacking yeast.  The animals remained on this diet until four days after emergence, when one group of adults was switched back to standard diet containing yeast (group Y) while another remained on the diet lacking yeast (group NY).  Flies from both groups were killed every hour for the next twelve hours, creating 24 samples across the two treatments.  In addition, four samples of flies were killed just before the start of the time course and used as baseline replicates for the no yeast (NY) and yeast (Y) treatments.  Baseline replicates were temporally ordered as noted for change-point analysis.  No yeast (NY) treatment samples at hours four and eight did not yield microarray data due to insufficient RNA.

Total RNA was extracted from whole animals using Trizol (Invitrogen).  Sample processing and microarray hybridization/scanning were performed at the Brown University Center for Genetics and Genomics according to Affymetrix protocol.  Microarray data was normalized by DNA-Chip Analyzer  (dChip, http://www.dchip.org), which utilizes an invariant difference selection (IDS) algorithm to construct a normalization relation.
Keywords = insulin, diet, nutrition


title: Hour 1 Yeast (Y)

description:
Hour 1 Yeast Treatment (Y).

Larvae were reared on standard diet until early third instar, at which time they were washed and transferred to standard diet lacking yeast.  The animals remained on this diet until four days after emergence, when one group of adults was switched back to standard diet containing yeast (group Y) while another remained on the diet lacking yeast (group NY).  Flies from both groups were killed every hour for the next twelve hours, creating 24 samples across the two treatments.  In addition, four samples of flies were killed just before the start of the time course and used as baseline replicates for the no yeast (NY) and yeast (Y) treatments.  Baseline replicates were temporally ordered as noted for change-point analysis.  No yeast (NY) treatment samples at hours four and eight did not yield microarray data due to insufficient RNA.

Total RNA was extracted from whole animals using Trizol (Invitrogen).  Sample processing and microarray hybridization/scanning were performed at the Brown University Center for Genetics and Genomics according to Affymetrix protocol.  Microarray data was normalized by DNA-Chip Analyzer  (dChip, http://www.dchip.org), which utilizes an invariant difference selection (IDS) algorithm to construct a normalization relation.
Keywords = insulin, diet, nutrition


title: Hour 3 No Yeast (NY)

description:
Hour 3 No Yeast Treatment (NY).

Larvae were reared on standard diet until early third instar, at which time they were washed and transferred to standard diet lacking yeast.  The animals remained on this diet until four days after emergence, when one group of adults was switched back to standard diet containing yeast (group Y) while another remained on the diet lacking yeast (group NY).  Flies from both groups were killed every hour for the next twelve hours, creating 24 samples across the two treatments.  In addition, four samples of flies were killed just before the start of the time course and used as baseline replicates for the no yeast (NY) and yeast (Y) treatments.  Baseline replicates were temporally ordered as noted for change-point analysis.  No yeast (NY) treatment samples at hours four and eight did not yield microarray data due to insufficient RNA.

Total RNA was extracted from whole animals using Trizol (Invitrogen).  Sample processing and microarray hybridization/scanning were performed at the Brown University Center for Genetics and Genomics according to Affymetrix protocol.  Microarray data was normalized by DNA-Chip Analyzer  (dChip, http://www.dchip.org), which utilizes an invariant difference selection (IDS) algorithm to construct a normalization relation.
Keywords = insulin, diet, nutrition


title: Hour 2 Yeast (Y)

description:
Hour 2 Yeast Treatment (Y).

Larvae were reared on standard diet until early third instar, at which time they were washed and transferred to standard diet lacking yeast.  The animals remained on this diet until four days after emergence, when one group of adults was switched back to standard diet containing yeast (group Y) while another remained on the diet lacking yeast (group NY).  Flies from both groups were killed every hour for the next twelve hours, creating 24 samples across the two treatments.  In addition, four samples of flies were killed just before the start of the time course and used as baseline replicates for the no yeast (NY) and yeast (Y) treatments.  Baseline replicates were temporally ordered as noted for change-point analysis.  No yeast (NY) treatment samples at hours four and eight did not yield microarray data due to insufficient RNA.

Total RNA was extracted from whole animals using Trizol (Invitrogen).  Sample processing and microarray hybridization/scanning were performed at the Brown University Center for Genetics and Genomics according to Affymetrix protocol.  Microarray data was normalized by DNA-Chip Analyzer  (dChip, http://www.dchip.org), which utilizes an invariant difference selection (IDS) algorithm to construct a normalization relation.
Keywords = insulin, diet, nutrition


title: Stomach [JunctionChip 5 of 5]

source_name: Stomach


title: Spleen [JunctionChip 5 of 5]

source_name: Spleen


title: Colorectal Adenocarcinoma (SW480) [JunctionChip 5 of 5]

source_name: Colorectal Adenocarcinoma (SW480)


title: Brain (amygdala) [JunctionChip 5 of 5]

source_name: Brain (amygdala)


title: Hour -3

description:
Baseline replicated, ordered as hour -3.

Larvae were reared on standard diet until early third instar, at which time they were washed and transferred to standard diet lacking yeast.  The animals remained on this diet until four days after emergence, when one group of adults was switched back to standard diet containing yeast (group Y) while another remained on the diet lacking yeast (group NY).  Flies from both groups were killed every hour for the next twelve hours, creating 24 samples across the two treatments.  In addition, four samples of flies were killed just before the start of the time course and used as baseline replicates for the no yeast (NY) and yeast (Y) treatments.  Baseline replicates were temporally ordered as noted for change-point analysis.  No yeast (NY) treatment samples at hours four and eight did not yield microarray data due to insufficient RNA.

Total RNA was extracted from whole animals using Trizol (Invitrogen).  Sample processing and microarray hybridization/scanning were performed at the Brown University Center for Genetics and Genomics according to Affymetrix protocol.  Microarray data was normalized by DNA-Chip Analyzer  (dChip, http://www.dchip.org), which utilizes an invariant difference selection (IDS) algorithm to construct a normalization relation.
Keywords = insulin, diet, nutrition


title: Melanoma (G361) [JunctionChip 5 of 5]

source_name: Melanoma (G361)


title: Hour -4

description:
Baseline replicate, ordered as hour -4.

Larvae were reared on standard diet until early third instar, at which time they were washed and transferred to standard diet lacking yeast.  The animals remained on this diet until four days after emergence, when one group of adults was switched back to standard diet containing yeast (group Y) while another remained on the diet lacking yeast (group NY).  Flies from both groups were killed every hour for the next twelve hours, creating 24 samples across the two treatments.  In addition, four samples of flies were killed just before the start of the time course and used as baseline replicates for the no yeast (NY) and yeast (Y) treatments.  Baseline replicates were temporally ordered as noted for change-point analysis.  No yeast (NY) treatment samples at hours four and eight did not yield microarray data due to insufficient RNA.

Total RNA was extracted from whole animals using Trizol (Invitrogen).  Sample processing and microarray hybridization/scanning were performed at the Brown University Center for Genetics and Genomics according to Affymetrix protocol.  Microarray data was normalized by DNA-Chip Analyzer  (dChip, http://www.dchip.org), which utilizes an invariant difference selection (IDS) algorithm to construct a normalization relation.
Keywords = insulin, diet, nutrition


title: Leukemia Promyelocytic (HL-60) [JunctionChip 4 of 5]

source_name: Leukemia Promyelocytic (HL-60)


title: Leukemia Promyelocytic (HL-60) [JunctionChip 3 of 5]


title: Leukemia Lymphoblastic (MOLT-4) [JunctionChip 3 of 5]

source_name: Leukemia Lymphoblastic (MOLT-4)


title: Brain (caudate nucleus) [JunctionChip 1 of 5]

source_name: Brain (caudate nucleus)


title: Brain (caudate nucleus) [JunctionChip 4 of 5]


title: Jejunum 2 [JunctionChip 4 of 5]

source_name: Jejunum


title: Thymus [JunctionChip 5 of 5]

source_name: Thymus


title: Lymphoma (Burkitts Daudi) [JunctionChip 3 of 5]

source_name: Lymphoma (Burkitts Daudi)


title: Hour -2

description:
Baseline replicate, ordered as hour -2.

Larvae were reared on standard diet until early third instar, at which time they were washed and transferred to standard diet lacking yeast.  The animals remained on this diet until four days after emergence, when one group of adults was switched back to standard diet containing yeast (group Y) while another remained on the diet lacking yeast (group NY).  Flies from both groups were killed every hour for the next twelve hours, creating 24 samples across the two treatments.  In addition, four samples of flies were killed just before the start of the time course and used as baseline replicates for the no yeast (NY) and yeast (Y) treatments.  Baseline replicates were temporally ordered as noted for change-point analysis.  No yeast (NY) treatment samples at hours four and eight did not yield microarray data due to insufficient RNA.

Total RNA was extracted from whole animals using Trizol (Invitrogen).  Sample processing and microarray hybridization/scanning were performed at the Brown University Center for Genetics and Genomics according to Affymetrix protocol.  Microarray data was normalized by DNA-Chip Analyzer  (dChip, http://www.dchip.org), which utilizes an invariant difference selection (IDS) algorithm to construct a normalization relation.
Keywords = insulin, diet, nutrition

source_name: Whole animal (Drosophila)


title: Brain (caudate nucleus) [JunctionChip 3 of 5]


title: Leukemia Lymphoblastic (MOLT-4) [JunctionChip 1 of 5]


title: Leukemia Promyelocytic (HL-60) [JunctionChip 1 of 5]


title: Leukemia Lymphoblastic (MOLT-4) [JunctionChip 4 of 5]


title: Lymphoma (Burkitts Daudi) [JunctionChip 4 of 5]


title: Colon (descending) [JunctionChip 3 of 5]

source_name: Colon (descending)


title: Colon (descending) [JunctionChip 1 of 5]


title: Testis [JunctionChip 4 of 5]

source_name: Testis


title: Epididymis [JunctionChip 4 of 5]

source_name: Epididymis


title: Jejunum 2 [JunctionChip 1 of 5]


title: Lymphoma (Burkitts Daudi) [JunctionChip 1 of 5]


title: Mislabeled (was labeled Heart (interventricular septum)) [JunctionChip 4 of 5]


title: Testis [JunctionChip 1 of 5]


title: Lymph Node [JunctionChip 5 of 5]

source_name: Lymph Node


title: Brain (postcentral gyrus) [JunctionChip 4 of 5]

source_name: Brain (postcentral gyrus)


title: Lung (fetal) [JunctionChip 4 of 5]

source_name: Lung (fetal)


title: Testis [JunctionChip 3 of 5]


title: Jejunum [JunctionChip 4 of 5]


title: Brain (postcentral gyrus) [JunctionChip 1 of 5]


title: Jejunum 2 [JunctionChip 3 of 5]


title: Epididymis [JunctionChip 1 of 5]


title: Kidney [JunctionChip 4 of 5]

source_name: Kidney


title: Lymphoma (Burkitts Raji) [JunctionChip 4 of 5]

source_name: Lymphoma (Burkitts Raji)


title: Brain (hippocampus) [JunctionChip 4 of 5]

source_name: Brain (hippocampus)


title: Brain (cerebral cortex) [JunctionChip 4 of 5]

source_name: Brain (cerebral cortex)


title: Epididymis [JunctionChip 3 of 5]


title: Lung (fetal) [JunctionChip 1 of 5]


title: Lung (fetal) [JunctionChip 3 of 5]


title: Mislabeled (was labeled Heart (interventricular septum)) [JunctionChip 3 of 5]


title: Tonsil [JunctionChip 4 of 5]

source_name: Tonsil


title: Brain (postcentral gyrus) [JunctionChip 3 of 5]


title: Jejunum [JunctionChip 3 of 5]


title: Uterus (corpus) [JunctionChip 4 of 5]

source_name: Uterus (corpus)


title: Spinal cord [JunctionChip 4 of 5]

source_name: Spinal cord


title: Heart (interventricular septum) [JunctionChip 1 of 5]

source_name: Heart (interventricular septum)


title: Lymph Node [JunctionChip 4 of 5]


title: Jejunum [JunctionChip 1 of 5]

source_name: Jejunum


title: Tonsil [JunctionChip 3 of 5]


title: Stomach [JunctionChip 4 of 5]

source_name: Stomach


title: Bone marrow [JunctionChip 4 of 5]

source_name: Bone marrow


title: Thymus [JunctionChip 4 of 5]

source_name: Thymus


title: Tonsil [JunctionChip 1 of 5]


title: Spleen [JunctionChip 4 of 5]

source_name: Spleen


title: Colon (descending) [JunctionChip 4 of 5]

source_name: Colon (descending)


title: Kidney [JunctionChip 1 of 5]


title: Brain (amygdala) [JunctionChip 4 of 5]

source_name: Brain (amygdala)


title: Kidney [JunctionChip 3 of 5]


title: Brain (hippocampus) [JunctionChip 3 of 5]


title: Leukemia Promyelocytic (HL-60) [JunctionChip 2 of 5]

source_name: Leukemia Promyelocytic (HL-60)


title: Colorectal Adenocarcinoma (SW480) [JunctionChip 4 of 5]

source_name: Colorectal Adenocarcinoma (SW480)


title: Lymphoma (Burkitts Daudi) [JunctionChip 2 of 5]

source_name: Lymphoma (Burkitts Daudi)


title: Brain (hippocampus) [JunctionChip 1 of 5]


title: Brain (caudate nucleus) [JunctionChip 2 of 5]

source_name: Brain (caudate nucleus)


title: Leukemia Lymphoblastic (MOLT-4) [JunctionChip 2 of 5]

source_name: Leukemia Lymphoblastic (MOLT-4)


title: Colon (descending) [JunctionChip 2 of 5]


title: Brain (cerebral cortex) [JunctionChip 1 of 5]

source_name: Brain (cerebral cortex)


title: Lymph Node [JunctionChip 3 of 5]

source_name: Lymph Node


title: Jejunum 2 [JunctionChip 2 of 5]


title: Uterus (corpus) [JunctionChip 1 of 5]

source_name: Uterus (corpus)


title: Lymphoma (Burkitts Raji) [JunctionChip 3 of 5]

source_name: Lymphoma (Burkitts Raji)


title: Epididymis [JunctionChip 2 of 5]

source_name: Epididymis


title: Brain (postcentral gyrus) [JunctionChip 2 of 5]

source_name: Brain (postcentral gyrus)


title: Lymphoma (Burkitts Raji) [JunctionChip 1 of 5]


title: Testis [JunctionChip 2 of 5]

source_name: Testis


title: Brain (cerebral cortex) [JunctionChip 3 of 5]


title: Uterus (corpus) [JunctionChip 3 of 5]


title: Hour 7 Yeast (Y)

description:
Hour 7 Yeast Treatment (Y).

Larvae were reared on standard diet until early third instar, at which time they were washed and transferred to standard diet lacking yeast.  The animals remained on this diet until four days after emergence, when one group of adults was switched back to standard diet containing yeast (group Y) while another remained on the diet lacking yeast (group NY).  Flies from both groups were killed every hour for the next twelve hours, creating 24 samples across the two treatments.  In addition, four samples of flies were killed just before the start of the time course and used as baseline replicates for the no yeast (NY) and yeast (Y) treatments.  Baseline replicates were temporally ordered as noted for change-point analysis.  No yeast (NY) treatment samples at hours four and eight did not yield microarray data due to insufficient RNA.

Total RNA was extracted from whole animals using Trizol (Invitrogen).  Sample processing and microarray hybridization/scanning were performed at the Brown University Center for Genetics and Genomics according to Affymetrix protocol.  Microarray data was normalized by DNA-Chip Analyzer  (dChip, http://www.dchip.org), which utilizes an invariant difference selection (IDS) algorithm to construct a normalization relation.
Keywords = insulin, diet, nutrition

source_name: Whole animal (Drosophila)


title: Spinal cord [JunctionChip 1 of 5]

source_name: Spinal cord


title: Bone marrow [JunctionChip 1 of 5]

source_name: Bone marrow


title: Lung (fetal) [JunctionChip 2 of 5]

source_name: Lung (fetal)


title: Lymph Node [JunctionChip 1 of 5]


title: Jejunum [JunctionChip 2 of 5]

source_name: Jejunum


title: Tonsil [JunctionChip 2 of 5]

source_name: Tonsil


title: Bone marrow [JunctionChip 3 of 5]


title: Mislabeled (was labeled Heart (interventricular septum)) [JunctionChip 2 of 5]


title: Thymus [JunctionChip 3 of 5]

source_name: Thymus


title: Lymph Node [JunctionChip 2 of 5]


title: Brain (hippocampus) [JunctionChip 2 of 5]

source_name: Brain (hippocampus)


title: Brain (cerebral cortex) [JunctionChip 2 of 5]


title: Thymus [JunctionChip 2 of 5]


title: Uterus (corpus) [JunctionChip 2 of 5]


title: Spleen [JunctionChip 3 of 5]

source_name: Spleen


title: Spinal cord [JunctionChip 2 of 5]


title: Melanoma (G361) [JunctionChip 1 of 5]

source_name: Melanoma (G361)


title: Spinal cord [JunctionChip 3 of 5]


title: Melanoma (G361) [JunctionChip 3 of 5]


title: Stomach [JunctionChip 3 of 5]

source_name: Stomach


title: Melanoma (G361) [JunctionChip 2 of 5]


title: Spleen [JunctionChip 2 of 5]


title: Stomach [JunctionChip 2 of 5]


title: Bone marrow [JunctionChip 2 of 5]


title: Colorectal Adenocarcinoma (SW480) [JunctionChip 1 of 5]

source_name: Colorectal Adenocarcinoma (SW480)


title: Colorectal Adenocarcinoma (SW480) [JunctionChip 3 of 5]


title: Stomach [JunctionChip 1 of 5]


title: Brain (amygdala) [JunctionChip 3 of 5]

source_name: Brain (amygdala)


title: Brain (amygdala) [JunctionChip 1 of 5]


title: Salivary Gland [JunctionChip 1 of 5]

source_name: Salivary Gland


title: Spleen [JunctionChip 1 of 5]


title: Colorectal Adenocarcinoma (SW480) [JunctionChip 2 of 5]


title: Brain (amygdala) [JunctionChip 2 of 5]


title: Liver - left lobe versus Jejunum  [GenomeWideEVG_MRK2219]

status: Public on Dec 18 2003

city: Seattle

first: Stephen

middle: W

last: Edwards

department: Research Genetics

institute: Rosetta Inpharmatics (Merck & Co.)

description:
Samples were purchased from Clontech as mRNA.
Hybridization material was generated through a random-priming amplification procedure (RP-AMP) using primers with a random sequence at the 3' end and a fixed motif at the 5' end.  shDNP256 (first strand synthesis): 5'- TAG ATG CTG TTG NNN NNN NNN -3'  shT7N9 (second strand synthesis): 5'- ACT ATA GGG AGA NNN NNN NNN -3'  1.5  g of mRNA was reverse-transcribed with Superscript II and the DP256 random primer for 20 minutes at 42 C (10 mM DTT, 50 mM Tris-HCl pH 8.3, 75 mM KCl, 8 mM MgCl2, 0.5 mM dNTPs, 5 U/ l Superscript II). The RNA was  degraded with the addition of 20 l volume of 0.5N sodium hydroxide and 0.25 M EDTA for 20 minutes at 65 C.  The single stranded cDNA was purified using a commercial kit (Qiagen Qiaquick).
The resulting product of single stranded cDNA was placed in its entirety in a second strand reaction. Second strand synthesis reactions utilized shT7N9 random primer and the Klenow fragment of DNA polymerase utilizing standard reaction conditions (37 C for 60 minutes, 0.2 mM DTT, 2.1 mM Tris-HCl pH 7.9, 2.1 mM MgCl2, 10.7 mM NaCl, 1.07 mM dNTPs, 0.1U/ l Klenow), followed by another Qiaquick purification.  Multiple polymerase chain reactions were run using 0.15  g of double stranded DNA and standard reaction conditions.  Amplification was achieved using 10 cycles of PCR with the DP256 and T7 primers (20 mM Tris-HCl pH 8.4, 50 mM KCl, 0.01 mM dNTPs, 1.5 mM MgCl2, 0.01 U/ l Taq Polymerase)  DP256: 5'- GTT CGA GAC CTC TAG ATG CTG TTG -3'  T7: 5'- AA TTA ATA CGA CTC ACT ATA GGG AGA -3'  followed by Qiaquick purification.
Further amplification was achieved using in vitro transcription reactions with X0.5  g dsDNA and T7 RNA Polymerase (7.5 mM DTT, 40 mM Tris-HCl pH 7.5, 14.25 mM MgCl2, 10 mM NaCl, 2 mM Spermidine, 125 U/ml RNAguard, 2.5 mM dNTPs, 15 U/ml IPPase, 25kU/ml T7 Polymerase) for 16 hours at 42 C. The cRNA was purified (RNeasy) and  reverse transcribed using Superscript and random 9-mers and amino-allyl dUTP (42 C for 20 minutes, 10 mM DTT, 50mM Tris-HCl pH 8.3, 75 mM KCl, 8 mM MgCl2, 0.5 mM dNTPs, 0.5 mM aa-dUTP, 5 U/ l Superscript II).
The cDNA for each channel was covalently coupled separately with Cy5 and Cy3 monoreactive fluors, respectively, in 1M sodium bicarbonate, pH 9.0, followed by quenching with 4.0 M hydroxylamine. The Cy5 and Cy3 labelled cDNAs were purified with a QIAquick PCR purification kit and the percentage dye incorporation and total cDNA yield was determined spectrophotometrically. Cy5 and Cy3 labelled cDNAs were combined and added to 2 mls 30% formamide with Herring Sperm DNA for hybridization to the microarray.
Further details can be found in Castle et al., Genome Biol 2003;4(10):R66, http://genomebiology.com/2003/4/10/R66 , Roberts CJ et al., Science 2000, 287:873-880, and Schadt, Edwards, et al., unpublished.

source_name: Liver - left lobe


title: rectum  versus rectum  [GenomeWideEVG_MRK2219]

source_name: rectum


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2219]

source_name: Ileocecum

source_name: Brain - hippocampus


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2219]

source_name: Epididymis

source_name: Duodenum


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2219]

source_name: Tongue


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2219]

source_name: Uterus - corpus

source_name: Colon - transverse


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2219]

source_name: Adrenal cortex

source_name: Brain - thalamus


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2219]

source_name: Bladder

source_name: Adrenal medulla


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2219]

source_name: Heart - interventricular septum

source_name: Retina (was called Ileum)


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2219]

source_name: Brain - postcentral gyrus


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2219]

source_name: Colon - descending

source_name: Brain - cerebral cortex


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2219]

source_name: CL: Lung carcinoma (A549)

source_name: Stomach


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2219]

source_name: Spinal cord

source_name: CL: Leukemia Lymphoblastic (MOLT-4)


title: Adrenal cortex  versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2219]

source_name: CL: Leukemia Chronic Myelogenous (K562)


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2219]

source_name: Brain - corpus callosum

source_name: Lymph Node


title: Uterus versus Testis [GenomeWideEVG_MRK2219]

source_name: Uterus

source_name: Testis


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2219]

source_name: CL: Melanoma (G361)

source_name: CL: Colorectal Adenocarcinoma (SW480)


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2219]

source_name: CL: Lymphoma - Burkitts (Daudi)

source_name: Small Intestine


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2219]

source_name: Kidney - fetal

source_name: Brain


title: Lung versus Placenta [GenomeWideEVG_MRK2219]

source_name: Lung

source_name: Placenta


title: Heart versus Spleen [GenomeWideEVG_MRK2219]

source_name: Heart

source_name: Spleen


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2219]

source_name: CL: Lymphoma - Burkitts (Raji)

source_name: Kidney


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2219]

source_name: Liver - fetal

source_name: Thyroid


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2219]

source_name: CL: Hela

source_name: Brain - fetal


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2218]

source_name: Tonsil

source_name: Tongue


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2219]

source_name: Bone marrow

source_name: Lung - fetal


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2219]

source_name: CL: Leukemia Promyelocytic (HL-60)

source_name: Brain - caudate nucleus


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2219]

source_name: Liver

source_name: Brain - cerebellum


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2219]

source_name: Skeletal Muscle

source_name: Adrenal gland


title: Thymus versus Pancreas [GenomeWideEVG_MRK2219]

source_name: Thymus

source_name: Pancreas


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2218]

source_name: Ileocecum

source_name: Brain - hippocampus


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2218]

source_name: Epididymis

source_name: Duodenum


title: Prostate versus Trachea [GenomeWideEVG_MRK2219]

source_name: Prostate

source_name: Trachea


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2218]

source_name: Uterus - corpus

source_name: Colon - transverse


title: Liver - left lobe versus Jejunum  [GenomeWideEVG_MRK2218]

source_name: Liver - left lobe

source_name: Jejunum


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2218]

source_name: Heart - interventricular septum

source_name: Retina (was called Ileum)


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2218]

source_name: Colon - descending

source_name: Brain - cerebral cortex


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2218]

source_name: Brain - postcentral gyrus

source_name: Salivary Gland


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2218]

source_name: Bladder

source_name: Adrenal medulla


title: rectum  versus rectum  [GenomeWideEVG_MRK2218]

source_name: rectum


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2218]

source_name: Adrenal cortex

source_name: Brain - thalamus


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2218]

source_name: Spinal cord

source_name: CL: Leukemia Lymphoblastic (MOLT-4)


title: Adrenal cortex  versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2218]

source_name: CL: Leukemia Chronic Myelogenous (K562)


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2218]

source_name: CL: Lymphoma - Burkitts (Raji)

source_name: Kidney


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2218]

source_name: Bone marrow

source_name: Lung - fetal


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2218]

source_name: CL: Melanoma (G361)

source_name: CL: Colorectal Adenocarcinoma (SW480)


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2218]

source_name: CL: Lung carcinoma (A549)

source_name: Stomach


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2218]

source_name: CL: Lymphoma - Burkitts (Daudi)

source_name: Small Intestine


title: Heart versus Spleen [GenomeWideEVG_MRK2218]

source_name: Heart

source_name: Spleen


title: Uterus versus Testis [GenomeWideEVG_MRK2218]

source_name: Uterus

source_name: Testis


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2218]

source_name: Brain - corpus callosum

source_name: Lymph Node


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2218]

source_name: CL: Leukemia Promyelocytic (HL-60)

source_name: Brain - caudate nucleus


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2218]

source_name: Liver

source_name: Brain - cerebellum


title: Prostate versus Trachea [GenomeWideEVG_MRK2218]

source_name: Prostate

source_name: Trachea


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2218]

source_name: Skeletal Muscle

source_name: Adrenal gland


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2218]

source_name: CL: Hela

source_name: Brain - fetal


title: Lung versus Placenta [GenomeWideEVG_MRK2218]

source_name: Lung

source_name: Placenta


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2218]

source_name: Liver - fetal

source_name: Thyroid


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2218]

source_name: Kidney - fetal

source_name: Brain


title: Thymus versus Pancreas [GenomeWideEVG_MRK2218]

source_name: Thymus

source_name: Pancreas


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2212]

source_name: Tonsil

source_name: Tongue


title: Liver - left lobe versus Jejunum  [GenomeWideEVG_MRK2212]

source_name: Liver - left lobe

source_name: Jejunum


title: Liver - left lobe versus Jejunum  [GenomeWideEVG_MRK2217]


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2212]

source_name: Heart - interventricular septum

source_name: Retina (was called Ileum)


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2212]

source_name: Brain - postcentral gyrus

source_name: Salivary Gland


title: rectum  versus rectum  [GenomeWideEVG_MRK2212]

source_name: rectum


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2217]


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2212]

source_name: Ileocecum

source_name: Brain - hippocampus


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2217]


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2217]

source_name: Epididymis

source_name: Duodenum


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2212]

source_name: Uterus - corpus

source_name: Colon - transverse


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2217]


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2212]


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2212]

source_name: Colon - descending

source_name: Brain - cerebral cortex


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2217]


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2217]


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2212]

source_name: Adrenal cortex

source_name: Brain - thalamus


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2217]

source_name: Bladder

source_name: Adrenal medulla


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2212]


title: Adrenal cortex  versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2212]

source_name: CL: Leukemia Chronic Myelogenous (K562)


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2217]


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2217]

source_name: CL: Lung carcinoma (A549)

source_name: Stomach


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2212]


title: Adrenal cortex  versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2217]


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2212]

source_name: CL: Lymphoma - Burkitts (Raji)

source_name: Kidney


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2212]

source_name: Bone marrow

source_name: Lung - fetal


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2212]

source_name: Spinal cord

source_name: CL: Leukemia Lymphoblastic (MOLT-4)


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2212]

source_name: CL: Melanoma (G361)

source_name: CL: Colorectal Adenocarcinoma (SW480)


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2217]


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2217]

source_name: Brain - corpus callosum

source_name: Lymph Node


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2217]


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2212]


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2212]

source_name: Kidney - fetal

source_name: Brain


title: Heart versus Spleen [GenomeWideEVG_MRK2212]

source_name: Heart

source_name: Spleen


title: Uterus versus Testis [GenomeWideEVG_MRK2212]

source_name: Uterus

source_name: Testis


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2217]


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2212]

source_name: CL: Lymphoma - Burkitts (Daudi)

source_name: Small Intestine


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2217]


title: Lung versus Placenta [GenomeWideEVG_MRK2212]

source_name: Lung

source_name: Placenta


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2217]


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2217]

source_name: Liver

source_name: Brain - cerebellum


title: Lung versus Placenta [GenomeWideEVG_MRK2217]


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2217]

source_name: Skeletal Muscle

source_name: Adrenal gland


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2217]

source_name: Tonsil

source_name: Tongue


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2212]

source_name: Liver - fetal

source_name: Thyroid


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2212]

source_name: CL: Leukemia Promyelocytic (HL-60)

source_name: Brain - caudate nucleus


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2217]

source_name: CL: Lymphoma - Burkitts (Raji)

source_name: Kidney


title: Uterus versus Testis [GenomeWideEVG_MRK2217]

source_name: Uterus

source_name: Testis


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2212]


title: Heart versus Spleen [GenomeWideEVG_MRK2217]

source_name: Heart

source_name: Spleen


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2217]


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2212]

source_name: CL: Hela

source_name: Brain - fetal


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2212]


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2217]


title: Thymus versus Pancreas [GenomeWideEVG_MRK2212]

source_name: Thymus

source_name: Pancreas


title: Prostate versus Trachea [GenomeWideEVG_MRK2212]

source_name: Prostate

source_name: Trachea


title: Prostate versus Trachea [GenomeWideEVG_MRK2217]


title: rectum  versus rectum  [GenomeWideEVG_MRK2217]

source_name: rectum


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2217]

source_name: Liver - fetal


title: rectum  versus rectum  [GenomeWideEVG_MRK2211]


title: Thymus versus Pancreas [GenomeWideEVG_MRK2217]


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2211]

source_name: Tonsil

source_name: Tongue


title: Liver - left lobe versus Jejunum  [GenomeWideEVG_MRK2211]

source_name: Liver - left lobe

source_name: Jejunum


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2203]


title: Liver - left lobe versus Jejunum  [GenomeWideEVG_MRK2215]


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2216]

source_name: Brain - postcentral gyrus

source_name: Salivary Gland


title: Liver - left lobe versus Jejunum  [GenomeWideEVG_MRK2203]


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2216]


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2211]

source_name: Heart - interventricular septum

source_name: Retina (was called Ileum)


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2215]


title: rectum  versus rectum  [GenomeWideEVG_MRK2203]


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2211]

source_name: Uterus - corpus

source_name: Colon - transverse


title: rectum  versus rectum  [GenomeWideEVG_MRK2215]


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2203]

source_name: Ileocecum

source_name: Brain - hippocampus


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2203]


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2215]


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2211]


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2203]

source_name: Epididymis

source_name: Duodenum


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2215]


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2216]


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2211]

source_name: Adrenal cortex

source_name: Brain - thalamus


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2216]


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2203]


title: Liver - left lobe versus Jejunum  [GenomeWideEVG_MRK2216]


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2215]


title: rectum  versus rectum  [GenomeWideEVG_MRK2216]

source_name: rectum


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2216]


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2203]


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2211]


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2211]

source_name: Bladder

source_name: Adrenal medulla


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2211]

source_name: Colon - descending

source_name: Brain - cerebral cortex


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2211]

source_name: Brain - postcentral gyrus


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2216]


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2215]


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2216]


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2211]

source_name: CL: Melanoma (G361)

source_name: CL: Colorectal Adenocarcinoma (SW480)


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2215]


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2215]


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2216]


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2216]


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2215]


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2216]

source_name: CL: Lung carcinoma (A549)

source_name: Stomach


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2203]


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2203]


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2211]

source_name: Spinal cord

source_name: CL: Leukemia Lymphoblastic (MOLT-4)


title: Adrenal cortex  versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2216]

source_name: CL: Leukemia Chronic Myelogenous (K562)


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2215]


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2203]


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2203]


title: Adrenal cortex  versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2203]


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2211]

source_name: Bone marrow

source_name: Lung - fetal


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2203]


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2203]


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2216]


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2216]


title: Adrenal cortex  versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2215]

source_name: Adrenal cortex


title: Adrenal cortex  versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2211]


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2215]


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2215]


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2211]

source_name: CL: Lymphoma - Burkitts (Raji)

source_name: Kidney


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2211]

source_name: Brain - corpus callosum

source_name: Lymph Node


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2203]


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2216]


title: Uterus versus Testis [GenomeWideEVG_MRK2211]

source_name: Uterus

source_name: Testis


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2215]


title: Heart versus Spleen [GenomeWideEVG_MRK2211]

source_name: Heart

source_name: Spleen


title: Heart versus Spleen [GenomeWideEVG_MRK2216]


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2211]

source_name: CL: Lymphoma - Burkitts (Daudi)

source_name: Small Intestine


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2203]


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2216]


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2215]


title: Heart versus Spleen [GenomeWideEVG_MRK2203]


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2203]


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2216]

source_name: CL: Leukemia Promyelocytic (HL-60)

source_name: Brain - caudate nucleus


title: Heart versus Spleen [GenomeWideEVG_MRK2215]


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2216]


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2215]


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2211]

source_name: Kidney - fetal

source_name: Brain


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2203]


title: Uterus versus Testis [GenomeWideEVG_MRK2216]


title: Uterus versus Testis [GenomeWideEVG_MRK2203]


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2215]


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2211]

source_name: CL: Hela

source_name: Brain - fetal


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2215]


title: Uterus versus Testis [GenomeWideEVG_MRK2215]


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2211]


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2216]


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2203]


title: Lung versus Placenta [GenomeWideEVG_MRK2211]

source_name: Lung

source_name: Placenta


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2203]


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2216]


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2215]


title: Lung versus Placenta [GenomeWideEVG_MRK2216]


title: Lung versus Placenta [GenomeWideEVG_MRK2203]


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2216]


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2216]

source_name: Liver

source_name: Brain - cerebellum


title: Prostate versus Trachea [GenomeWideEVG_MRK2211]

source_name: Prostate

source_name: Trachea


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2215]


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2211]

source_name: Liver - fetal

source_name: Thyroid


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2211]

source_name: Skeletal Muscle

source_name: Adrenal gland


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2203]


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2215]


title: Prostate versus Trachea [GenomeWideEVG_MRK2203]


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2203]


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2210]

source_name: Tonsil

source_name: Tongue


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2211]


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2216]


title: Lung versus Placenta [GenomeWideEVG_MRK2215]


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2203]


title: Prostate versus Trachea [GenomeWideEVG_MRK2215]


title: Prostate versus Trachea [GenomeWideEVG_MRK2216]


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2215]


title: Thymus versus Pancreas [GenomeWideEVG_MRK2203]

source_name: Thymus

source_name: Pancreas


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2215]


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2203]


title: Thymus versus Pancreas [GenomeWideEVG_MRK2216]


title: rectum  versus rectum  [GenomeWideEVG_MRK2210]

source_name: rectum


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2210]

source_name: Brain - postcentral gyrus

source_name: Salivary Gland


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2215]


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2216]


title: Thymus versus Pancreas [GenomeWideEVG_MRK2211]


title: Thymus versus Pancreas [GenomeWideEVG_MRK2215]


title: rectum  versus rectum  [GenomeWideEVG_MRK2214]


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2214]


title: Ileum (was called retina) versus rectum  [GenomeWideEVG_MRK2202]

source_name: Ileum (was called retina)


title: rectum  versus rectum  [GenomeWideEVG_MRK2213]


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2202]


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2214]


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2214]

source_name: Heart - interventricular septum

source_name: Retina (was called Ileum)


title: Liver - left lobe versus Jejunum  [GenomeWideEVG_MRK2213]

source_name: Liver - left lobe

source_name: Jejunum


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2202]


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2210]

source_name: Epididymis

source_name: Duodenum


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2213]


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2210]

source_name: Ileocecum

source_name: Brain - hippocampus


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2202]


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2210]


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2213]


title: Liver - left lobe versus Jejunum  [GenomeWideEVG_MRK2210]


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2213]


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2202]


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2214]


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2210]

source_name: Colon - descending

source_name: Brain - cerebral cortex


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2210]

source_name: Uterus - corpus

source_name: Colon - transverse


title: Liver - left lobe versus Jejunum  [GenomeWideEVG_MRK2214]


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2213]


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2214]


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2202]


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2210]

source_name: Bladder

source_name: Adrenal medulla


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2202]


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2214]


title: Liver - left lobe versus Liver - left lobe [GenomeWideEVG_MRK2202]


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2214]


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2210]

source_name: Adrenal cortex

source_name: Brain - thalamus


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2202]


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2213]


title: Adrenal cortex  versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2210]

source_name: CL: Leukemia Chronic Myelogenous (K562)


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2211]

source_name: CL: Lung carcinoma (A549)

source_name: Stomach


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2202]


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2210]


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2213]


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2202]


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2213]


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2214]


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2202]

source_name: Spinal cord

source_name: CL: Leukemia Lymphoblastic (MOLT-4)


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2210]

source_name: CL: Melanoma (G361)

source_name: CL: Colorectal Adenocarcinoma (SW480)


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2213]

source_name: Epididymis

source_name: Duodenum


title: Adrenal cortex  versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2214]


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2214]


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2210]

source_name: CL: Lymphoma - Burkitts (Raji)

source_name: Kidney


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2214]


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2210]

source_name: Brain - corpus callosum

source_name: Lymph Node


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2213]


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2213]


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2210]


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2213]


title: Adrenal cortex  versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2213]


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2214]


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2202]


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2210]

source_name: Bone marrow

source_name: Lung - fetal


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2213]


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2214]


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2214]


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2202]


title: Uterus versus Testis [GenomeWideEVG_MRK2210]

source_name: Uterus

source_name: Testis


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2213]


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2213]


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2214]


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2202]


title: Brain - amygdala versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2202]

source_name: Brain - amygdala

source_name: CL: Leukemia Chronic Myelogenous (K562)


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2210]

source_name: CL: Lymphoma - Burkitts (Daudi)

source_name: Small Intestine


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2202]


title: Uterus versus Testis [GenomeWideEVG_MRK2214]


title: Heart versus Spleen [GenomeWideEVG_MRK2210]

source_name: Heart

source_name: Spleen


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2210]

source_name: CL: Leukemia Promyelocytic (HL-60)

source_name: Brain - caudate nucleus


title: Heart versus Spleen [GenomeWideEVG_MRK2214]


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2214]

source_name: Spinal cord

source_name: CL: Leukemia Lymphoblastic (MOLT-4)


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2210]

source_name: Kidney - fetal

source_name: Brain


title: Uterus versus Testis [GenomeWideEVG_MRK2213]


title: Heart versus Spleen [GenomeWideEVG_MRK2213]


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2202]


title: Uterus versus Testis [GenomeWideEVG_MRK2202]


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2214]


title: Heart versus Spleen [GenomeWideEVG_MRK2202]


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2214]


title: Lung versus Placenta [GenomeWideEVG_MRK2210]

source_name: Lung

source_name: Placenta


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2202]


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2213]


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2213]


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2214]


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2210]

source_name: Liver

source_name: Brain - cerebellum


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2202]

source_name: Adrenal cortex

source_name: Brain - thalamus


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2210]

source_name: CL: Hela

source_name: Brain - fetal


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2202]


title: Lung versus Placenta [GenomeWideEVG_MRK2202]


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2213]


title: Lung versus Placenta [GenomeWideEVG_MRK2213]


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2210]

source_name: Skeletal Muscle

source_name: Adrenal gland


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2213]


title: Prostate versus Trachea [GenomeWideEVG_MRK2210]

source_name: Prostate

source_name: Trachea


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2214]


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2202]


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2214]


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2213]


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2210]

source_name: Liver - fetal

source_name: Thyroid


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2202]


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2202]


title: Thymus versus Pancreas [GenomeWideEVG_MRK2210]

source_name: Thymus

source_name: Pancreas


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2213]


title: Prostate versus Trachea [GenomeWideEVG_MRK2214]


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2214]


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2209]

source_name: Tonsil

source_name: Tongue


title: Thymus versus Pancreas [GenomeWideEVG_MRK2213]


title: Thymus versus Pancreas [GenomeWideEVG_MRK2214]


title: rectum  versus rectum  [GenomeWideEVG_MRK2209]

source_name: rectum


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2213]


title: Thymus versus Pancreas [GenomeWideEVG_MRK2202]


title: Lung versus Placenta [GenomeWideEVG_MRK2214]

source_name: Lung

source_name: Placenta


title: Liver - left lobe versus Jejunum  [GenomeWideEVG_MRK2209]

source_name: Liver - left lobe

source_name: Jejunum


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2202]


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2209]

source_name: Heart - interventricular septum

source_name: Retina (was called Ileum)


title: Prostate versus Trachea [GenomeWideEVG_MRK2202]


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2209]

source_name: Brain - postcentral gyrus

source_name: Salivary Gland


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2201]


title: Ileum (was called retina) versus rectum  [GenomeWideEVG_MRK2201]

source_name: Ileum (was called retina)


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2214]


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2209]

source_name: Ileocecum

source_name: Brain - hippocampus


title: Ileum (was called retina) versus rectum  [GenomeWideEVG_MRK2207]


title: Ileum (was called retina) versus rectum  [GenomeWideEVG_MRK2206]


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2206]


title: Liver - left lobe versus Liver - left lobe [GenomeWideEVG_MRK2206]


title: Liver - left lobe versus Liver - left lobe [GenomeWideEVG_MRK2201]


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2209]

source_name: Epididymis

source_name: Duodenum


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2201]


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2207]


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2207]


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2206]


title: Liver - left lobe versus Liver - left lobe [GenomeWideEVG_MRK2207]


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2209]

source_name: Colon - descending

source_name: Brain - cerebral cortex


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2206]


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2209]

source_name: Uterus - corpus

source_name: Colon - transverse


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2206]


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2206]


title: Adrenal cortex  versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2209]

source_name: Adrenal cortex

source_name: CL: Leukemia Chronic Myelogenous (K562)


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2207]


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2201]


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2201]


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2201]


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2201]


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2206]


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2209]

source_name: Brain - thalamus


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2209]

source_name: Spinal cord

source_name: CL: Leukemia Lymphoblastic (MOLT-4)


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2209]

source_name: Bladder

source_name: Adrenal medulla


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2207]

source_name: Heart - interventricular septum

source_name: Retina (was called Ileum)


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2207]


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2207]


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2201]


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2207]


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2206]

source_name: CL: Lung carcinoma (A549)

source_name: Stomach


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2206]


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2207]


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2207]


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2206]


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2209]

source_name: Bone marrow

source_name: Lung - fetal


title: Uterus versus Testis [GenomeWideEVG_MRK2209]

source_name: Uterus

source_name: Testis


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2206]


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2206]


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2209]

source_name: CL: Melanoma (G361)

source_name: CL: Colorectal Adenocarcinoma (SW480)


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2207]


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2207]


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2206]


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2201]

source_name: Colon - descending

source_name: Brain - cerebral cortex


title: Heart versus Spleen [GenomeWideEVG_MRK2209]

source_name: Heart

source_name: Spleen


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2206]

source_name: CL: Lymphoma - Burkitts (Raji)

source_name: Kidney


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2207]


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2209]

source_name: CL: Lymphoma - Burkitts (Daudi)

source_name: Small Intestine


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2201]


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2201]

source_name: Brain - corpus callosum

source_name: Lymph Node


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2201]

source_name: Spinal cord

source_name: CL: Leukemia Lymphoblastic (MOLT-4)


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2207]


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2209]

source_name: CL: Leukemia Promyelocytic (HL-60)

source_name: Brain - caudate nucleus


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2201]

source_name: Adrenal cortex

source_name: Brain - thalamus


title: Brain - amygdala versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2201]

source_name: Brain - amygdala

source_name: CL: Leukemia Chronic Myelogenous (K562)


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2201]


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2207]


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2201]

source_name: CL: Lung carcinoma (A549)

source_name: Stomach


title: Brain - amygdala versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2206]


title: Brain - amygdala versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2207]


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2207]

source_name: Bone marrow

source_name: Lung - fetal


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2201]


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2206]


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2206]


title: Lung versus Placenta [GenomeWideEVG_MRK2209]

source_name: Lung

source_name: Placenta


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2209]

source_name: CL: Hela

source_name: Brain - fetal


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2209]

source_name: Kidney - fetal

source_name: Brain


title: Uterus versus Testis [GenomeWideEVG_MRK2201]

source_name: Uterus

source_name: Testis


title: Uterus versus Testis [GenomeWideEVG_MRK2206]


title: Heart versus Spleen [GenomeWideEVG_MRK2201]

source_name: Heart

source_name: Spleen


title: Heart versus Spleen [GenomeWideEVG_MRK2207]


title: Uterus versus Testis [GenomeWideEVG_MRK2207]


title: Heart versus Spleen [GenomeWideEVG_MRK2206]


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2201]

source_name: CL: Lymphoma - Burkitts (Daudi)

source_name: Small Intestine


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2206]


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2207]

source_name: CL: Leukemia Promyelocytic (HL-60)

source_name: Brain - caudate nucleus


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2209]

source_name: Liver

source_name: Brain - cerebellum


title: Prostate versus Trachea [GenomeWideEVG_MRK2209]

source_name: Prostate

source_name: Trachea


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2209]

source_name: Skeletal Muscle

source_name: Adrenal gland


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2201]


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2206]


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2207]


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2201]


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2209]

source_name: Liver - fetal

source_name: Thyroid


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2207]

source_name: Kidney - fetal

source_name: Brain


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2206]


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2206]


title: Thymus versus Pancreas [GenomeWideEVG_MRK2209]

source_name: Thymus

source_name: Pancreas


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2208]

source_name: Tonsil

source_name: Tongue


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2207]

source_name: CL: Hela

source_name: Brain - fetal


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2207]


title: Lung versus Placenta [GenomeWideEVG_MRK2201]

source_name: Lung

source_name: Placenta


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2206]


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2201]


title: Lung versus Placenta [GenomeWideEVG_MRK2206]


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2201]


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2201]

source_name: Liver

source_name: Brain - cerebellum


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2206]


title: Lung versus Placenta [GenomeWideEVG_MRK2207]


title: rectum  versus rectum  [GenomeWideEVG_MRK2208]

source_name: rectum


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2208]

source_name: Brain - postcentral gyrus

source_name: Salivary Gland


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2207]

source_name: Skeletal Muscle

source_name: Adrenal gland


title: Liver - left lobe versus Jejunum  [GenomeWideEVG_MRK2208]

source_name: Liver - left lobe

source_name: Jejunum


title: Prostate versus Trachea [GenomeWideEVG_MRK2201]

source_name: Prostate

source_name: Trachea


title: Prostate versus Trachea [GenomeWideEVG_MRK2206]


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2207]

source_name: Liver - fetal

source_name: Thyroid


title: Prostate versus Trachea [GenomeWideEVG_MRK2207]


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2208]

source_name: Heart - interventricular septum

source_name: Retina (was called Ileum)


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2206]


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2201]


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2208]

source_name: Ileocecum

source_name: Brain - hippocampus


title: Thymus versus Pancreas [GenomeWideEVG_MRK2207]

source_name: Thymus

source_name: Pancreas


title: Thymus versus Pancreas [GenomeWideEVG_MRK2206]


title: Thymus versus Pancreas [GenomeWideEVG_MRK2201]


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2208]

source_name: Epididymis

source_name: Duodenum


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2205]

source_name: Tonsil

source_name: Tongue


title: Ileum (was called retina) versus rectum  [GenomeWideEVG_MRK2204]

source_name: Ileum (was called retina)

source_name: rectum


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2208]

source_name: Uterus - corpus

source_name: Colon - transverse


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2200]


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2208]

source_name: Bladder

source_name: Adrenal medulla


title: Ileum (was called retina) versus rectum  [GenomeWideEVG_MRK2205]


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2205]

source_name: Brain - postcentral gyrus

source_name: Salivary Gland


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2208]

source_name: Colon - descending

source_name: Brain - cerebral cortex


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2204]

source_name: Ileocecum

source_name: Brain - hippocampus


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2204]


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2208]

source_name: Adrenal cortex

source_name: Brain - thalamus


title: Brain - postcentral gyrus versus Salivary Gland [GenomeWideEVG_MRK2200]


title: Ileum (was called retina) versus rectum  [GenomeWideEVG_MRK2200]


title: Liver - left lobe versus Liver - left lobe [GenomeWideEVG_MRK2200]

source_name: Liver - left lobe


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2204]

source_name: Heart - interventricular septum

source_name: Retina (was called Ileum)


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2205]


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2208]

source_name: CL: Lung carcinoma (A549)

source_name: Stomach


title: Heart - interventricular septum  versus Retina (was called Ileum)  [GenomeWideEVG_MRK2200]


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2205]


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2204]

source_name: Epididymis

source_name: Duodenum


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2205]


title: Adrenal cortex  versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2208]

source_name: CL: Leukemia Chronic Myelogenous (K562)


title: Liver - left lobe versus Liver - left lobe [GenomeWideEVG_MRK2205]


title: Tonsil  versus Tongue [GenomeWideEVG_MRK2204]

source_name: Tonsil

source_name: Tongue


title: Ileocecum versus Brain - hippocampus [GenomeWideEVG_MRK2200]


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2208]

source_name: CL: Melanoma (G361)

source_name: CL: Colorectal Adenocarcinoma (SW480)


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2204]

source_name: Colon - descending

source_name: Brain - cerebral cortex


title: Epididymis  versus Duodenum  [GenomeWideEVG_MRK2200]


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2205]

source_name: Uterus - corpus

source_name: Colon - transverse


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2204]


title: Uterus - corpus  versus Colon - transverse [GenomeWideEVG_MRK2200]


title: Liver - left lobe versus Liver - left lobe [GenomeWideEVG_MRK2204]


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2208]

source_name: Brain - corpus callosum

source_name: Lymph Node


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2200]


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2208]

source_name: Spinal cord

source_name: CL: Leukemia Lymphoblastic (MOLT-4)


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2204]

source_name: Bladder

source_name: Adrenal medulla


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2205]


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2208]

source_name: CL: Lymphoma - Burkitts (Raji)

source_name: Kidney


title: Bladder versus Adrenal medulla  [GenomeWideEVG_MRK2200]


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2204]

source_name: CL: Lung carcinoma (A549)

source_name: Stomach


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2204]


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2200]


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2204]

source_name: Adrenal cortex

source_name: Brain - thalamus


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2205]


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2208]

source_name: Bone marrow

source_name: Lung - fetal


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2200]


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2204]


title: Colon - descending versus Brain - cerebral cortex [GenomeWideEVG_MRK2205]

source_name: Colon - descending

source_name: Brain - cerebral cortex


title: Uterus versus Testis [GenomeWideEVG_MRK2208]

source_name: Uterus

source_name: Testis


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2204]

source_name: Brain - corpus callosum

source_name: Lymph Node


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2204]

source_name: CL: Melanoma (G361)

source_name: CL: Colorectal Adenocarcinoma (SW480)


title: Adrenal cortex  versus Brain - thalamus [GenomeWideEVG_MRK2205]


title: Spinal cord versus CL: Leukemia Lymphoblastic (MOLT-4) [GenomeWideEVG_MRK2200]

source_name: Spinal cord

source_name: CL: Leukemia Lymphoblastic (MOLT-4)


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2208]

source_name: CL: Lymphoma - Burkitts (Daudi)

source_name: Small Intestine


title: Heart versus Spleen [GenomeWideEVG_MRK2208]

source_name: Heart

source_name: Spleen


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2200]


title: CL: Melanoma (G361) versus CL: Colorectal Adenocarcinoma (SW480) [GenomeWideEVG_MRK2205]


title: CL: Lung carcinoma (A549) versus Stomach [GenomeWideEVG_MRK2205]

source_name: CL: Lung carcinoma (A549)

source_name: Stomach


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2200]


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2200]

source_name: CL: Lymphoma - Burkitts (Raji)

source_name: Kidney


title: CL: Lymphoma - Burkitts (Raji) versus Kidney [GenomeWideEVG_MRK2205]


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2208]

source_name: CL: Leukemia Promyelocytic (HL-60)

source_name: Brain - caudate nucleus


title: Brain - amygdala versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2204]

source_name: Brain - amygdala

source_name: CL: Leukemia Chronic Myelogenous (K562)


title: Lung versus Placenta [GenomeWideEVG_MRK2208]

source_name: Lung

source_name: Placenta


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2208]

source_name: Kidney - fetal

source_name: Brain


title: Brain - corpus callosum versus Lymph Node [GenomeWideEVG_MRK2205]

source_name: Brain - corpus callosum

source_name: Lymph Node


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2208]

source_name: CL: Hela

source_name: Brain - fetal


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2208]

source_name: Liver

source_name: Brain - cerebellum


title: Heart versus Spleen [GenomeWideEVG_MRK2204]

source_name: Heart

source_name: Spleen


title: Uterus versus Testis [GenomeWideEVG_MRK2205]

source_name: Uterus

source_name: Testis


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2200]

source_name: Bone marrow

source_name: Lung - fetal


title: Uterus versus Testis [GenomeWideEVG_MRK2200]


title: Brain - amygdala versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2200]

source_name: Brain - amygdala

source_name: CL: Leukemia Chronic Myelogenous (K562)


title: Uterus versus Testis [GenomeWideEVG_MRK2204]


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2204]

source_name: CL: Lymphoma - Burkitts (Daudi)

source_name: Small Intestine


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2204]


title: Prostate versus Trachea [GenomeWideEVG_MRK2208]

source_name: Prostate

source_name: Trachea


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2204]

source_name: CL: Leukemia Promyelocytic (HL-60)

source_name: Brain - caudate nucleus


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2208]

source_name: Skeletal Muscle

source_name: Adrenal gland


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2200]


title: CL: Lymphoma - Burkitts (Daudi) versus Small Intestine [GenomeWideEVG_MRK2205]


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2205]


title: Bone marrow versus Lung - fetal [GenomeWideEVG_MRK2205]


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2204]

source_name: Kidney - fetal

source_name: Brain


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2208]

source_name: Liver - fetal

source_name: Thyroid


title: CL: Leukemia Promyelocytic (HL-60) versus Brain - caudate nucleus [GenomeWideEVG_MRK2200]


title: Heart versus Spleen [GenomeWideEVG_MRK2200]

source_name: Heart

source_name: Spleen


title: Lung versus Placenta [GenomeWideEVG_MRK2204]

source_name: Lung

source_name: Placenta


title: Thymus versus Pancreas [GenomeWideEVG_MRK2208]

source_name: Thymus

source_name: Pancreas


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2200]


title: Brain - amygdala versus CL: Leukemia Chronic Myelogenous (K562) [GenomeWideEVG_MRK2205]

source_name: Brain - amygdala

source_name: CL: Leukemia Chronic Myelogenous (K562)


title: Heart versus Spleen [GenomeWideEVG_MRK2205]


title: Lung versus Placenta [GenomeWideEVG_MRK2205]


title: Kidney - fetal versus Brain [GenomeWideEVG_MRK2205]


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2204]


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2200]

source_name: CL: Hela

source_name: Brain - fetal


title: Lung versus Placenta [GenomeWideEVG_MRK2200]


title: D351 mesoangioblast clone U74C

city: Modena

first: Enrico

last: Tagliafico

state: MO

address: Via Campi 287

department: Center for Genome Research

country: Italy

institute: University of Modena and Reggio Emilia

description:
Mouse dorsal aorta from E9.5 mouse embryos (C57BL6) was grown as an explant culture as described elsewhere (De Angelis et al., 1999). After 5 days the explant was dissociated into a single cell suspension, and plated at limiting dilution on a feeder layer of Mitomycin C-treated primary embryonic mouse fibroblasts, in 96 multiwell plates in complete medium, RPMI 20% Fetal Calf Serum. After 1 week, mesangioblast clones appeared approximately 2-4% of the wells. When the clones had grown to approximately 103 cells they were passed on gelatin-coated dishes, and further expanded. Clones  D16 and D351 were used for microarray analysis
Keywords = smooth muscle differentiation
Keywords = stem cell
Keywords = mesoangioblasts
Keywords = dorsal aorta

organism: Mus musculus

source_name: mouse mesoangioblasts


title: D16 mesoangioblast clone U74B


title: D351 mesoangioblast clone U74B


title: Prostate versus Trachea [GenomeWideEVG_MRK2204]

source_name: Prostate

source_name: Trachea


title: CL: Hela versus Brain - fetal [GenomeWideEVG_MRK2204]


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2200]

source_name: Liver

source_name: Brain - cerebellum


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2204]

source_name: Liver - fetal


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2204]


title: Thymus versus Pancreas [GenomeWideEVG_MRK2205]


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2200]

source_name: Thyroid


title: D16 mesoangioblast clone U74A


title: Thymus versus Pancreas [GenomeWideEVG_MRK2200]


title: D351 mesoangioblast clone U74A


title: MF-34

status: Public on Dec 16 2003

city: Berne 9

first: Martin

last: Flück

state: Bern

address: Bühlstrase 26

department: Department of Anatomy

country: Switzerland

institute: University of Berne

description:
14 days hindlimb suspended, 1 day reloaded
RNA was isolated from cryosections using RNeasy kit (Qiagen). 5 microgram total RNA was subjected to microarray analysis

organism: Rattus norvegicus

source_name: soleus muscle, young female pathogen-free Wistar rats


title: Liver versus Brain - cerebellum [GenomeWideEVG_MRK2205]


title: MF-36

description:
14 days hindlimb suspended, 1 day reloaded
RNA was isolated from cryosections using RNeasy kit (Qiagen). 5 microgram total RNA was subjected to microarray analysis.


title: Prostate versus Trachea [GenomeWideEVG_MRK2205]


title: Thymus versus Pancreas [GenomeWideEVG_MRK2204]


title: MF-33


title: MF-35


title: MF-32


title: D16 mesoangioblast clone U74C


title: MF-31


title: Skeletal Muscle versus Adrenal gland [GenomeWideEVG_MRK2205]

source_name: Skeletal Muscle

source_name: Adrenal gland


title: Prostate versus Trachea [GenomeWideEVG_MRK2200]


title: Liver - fetal versus Thyroid [GenomeWideEVG_MRK2205]


title: MF-26

description:
14 days hindlimb suspended
RNA was isolated from cryosections using RNeasy kit (Qiagen). 5 microgram total RNA was subjected to microarray analysis.


title: MF-25


title: SP-WT-Nrf2-Female-2

city: Madison

first: Jiang

last: Li

state: WI

address: 777 Highland Ave.

department: School of Pharmacy

institute: University of Wisconsin Madison

description:
Nrf2 +/+ mice (C57B6/SJL) were crossed with nrf2 -/- mice (C57B6/129SVJ) to generate mice heterozygous for nrf2. Interbreeding these heterozygotes generated the double-knockout mice (nrf2 -/-) as well as the corresponding littermate controls (nrf2 +/+). Mice were housed in plastic cages on a bedding of wood chips and maintained at ~22C, ~60% relative humidity, and a 12 hr light/dark cycle. The animals were fed with mouse diet 5015, which includes 30 IU/g of vitamin A and 35 IU/kg of vitamin E, (LabDiet, Richmond, IN) and drinking water ad libitum. All animal protocols were approved by the Institutional Animal Use and Care Committee at the University of Wisconsin-Madison. Total RNA was extracted from livers and spleens isolated from male and female nrf2 wildtype and knockout mice at 5 months of age (prior to the development of severe autoimmune disease).
Keywords = Nrf2
Keywords = spleen

source_name: Female Nrf2 Wild-type mice, spleen sample


title: 13


title: MF-24


title: WT-Nrf2-Male-2

description:
Nrf2 +/+ mice (C57B6/SJL) were crossed with nrf2 -/- mice (C57B6/129SVJ) to generate mice heterozygous for nrf2. Interbreeding these heterozygotes generated the double-knockout mice (nrf2 -/-) as well as the corresponding littermate controls (nrf2 +/+). Mice were housed in plastic cages on a bedding of wood chips and maintained at ~22C, ~60% relative humidity, and a 12 hr light/dark cycle. The animals were fed with mouse diet 5015, which includes 30 IU/g of vitamin A and 35 IU/kg of vitamin E, (LabDiet, Richmond, IN) and drinking water ad libitum. All animal protocols were approved by the Institutional Animal Use and Care Committee at the University of Wisconsin-Madison. Total RNA was extracted from livers and spleens isolated from male and female nrf2 wildtype and knockout mice at 5 months of age (prior to the development of severe autoimmune disease).
Keywords = Nrf2
Keywords = liver

source_name: Male Nrf2 Wild-type mice, liver sample


title: SP-WT-Nrf2-Female-1


title: SP-KO-Nrf2-Female-2

source_name: Female Nrf2 Knock-out mice, spleen sample


title: MF-22

description:
14 days hindlimb suspended
RNA was isolated from cryosections using RNeasy kit (Qiagen). 5 microgram total RNA was subjected to microarray analysis


title: MF-21


title: #1

description:
14 days age control
RNA was isolated from cryosections using RNeasy kit (Qiagen). 5 microgram total RNA was subjected to microarray analysis.


title: #2


title: MF-14


title: MF-11

description:
14 days age control
RNA was isolated from cryosections using RNeasy kit (Qiagen). 5 microgram total RNA was subjected to microarray analysis


title: SP-KO-Nrf2-Female-1

description:
Nrf2 +/+ mice (C57B6/SJL) were crossed with nrf2 -/- mice (C57B6/129SVJ) to generate mice heterozygous for nrf2. Interbreeding these heterozygotes generated the double-knockout mice (nrf2 -/-) as well as the corresponding littermate controls (nrf2 +/+). Mice were housed in plastic cages on a bedding of wood chips and maintained at ~22C, ~60% relative humidity, and a 12 hr light/dark cycle. The animals were fed with mouse diet 5015, which includes 30 IU/g of vitamin A and 35 IU/kg of vitamin E, (LabDiet, Richmond, IN) and drinking water ad libitum. All animal protocols were approved by the Institutional Animal Use and Care Committee at the University of Wisconsin-Madison. Total RNA was extracted from livers and spleens isolated from male and female nrf2 wildtype and knockout mice at 5 months of age (prior to the development of severe autoimmune disease).

Keywords = Nrf2
Keywords = spleen


title: MF-12


title: WT-Nrf2-Male-1

source_name: Male Nrf2 wild-type mice, liver sample


title: KO-Nrf2-Male-2

source_name: Knock-out Nrf2 mice, liver sample


title: KO-Nrf2-Female-2