title: 11548G2

description:
Probe Generation
Probes were generated from three independent BV2 cultures treated with freshly sonicated Abeta-42 peptide (California Peptide) along with controls. Briefly, mRNA was isolated from those cells as described previously.  Double-stranded cDNA (ds-cDNA) was generated by reverse transcription and second-strand synthesis, and digested with RsaI (New England Biolabs, Beverly, MA). Probes were generated through labeling with 33P-dCTP (Perkin Elmer Lifesciences, Boston, MA) using a Decamer labeling kit (Ambion, Austin, Texas).
Filter Hybridization
Hybridization of probes to filters was performed at 42.C for 24 hr in a hybridization solution containing 50% formamide.
Data Collection
A Cyclone phosphorimaging system (Packard Biosciences, Meriden, CT) and GenePix software analysis (GenePix Pro 3.0.6.24, Axon Instruments, Foster City, CA) were used to obtain densitometry of the 33P signal.
Sample_normalization_factor: 137
Sample_probe_id: 470


title: 15208U

status: Public on Oct 29 2003

type: RNA

city: South San Francisco

first: Scott

middle: Curtis

last: Lohr

state: CA

address: 290 Utah Ave.

department: Bioinformatics

country: USA

institute: AGY Therapeutics Inc.

description:
Probe Generation
Probes were generated from three independent BV2 cultures treated with freshly sonicated Abeta-42 peptide (California Peptide) along with controls. Briefly, mRNA was isolated from those cells as described previously.  Double-stranded cDNA (ds-cDNA) was generated by reverse transcription and second-strand synthesis, and digested with RsaI (New England Biolabs, Beverly, MA). Probes were generated through labeling with 33P-dCTP (Perkin Elmer Lifesciences, Boston, MA) using a Decamer labeling kit (Ambion, Austin, Texas).
Filter Hybridization
Hybridization of probes to filters was performed at 42.C for 24 hr in a hybridization solution containing 50% formamide.
Data Collection
A Cyclone phosphorimaging system (Packard Biosciences, Meriden, CT) and GenePix software analysis (GenePix Pro 3.0.6.24, Axon Instruments, Foster City, CA) were used to obtain densitometry of the 33P signal.
Sample_normalization_factor: 26
Sample_probe_id: 466

molecule: total RNA

organism: Homo sapiens

source_name: BV2, Abeta, 24h, stimulated


title: Reciprocity-4h medium UV-B-2

city: Rosario

first: Paula

last: Casati

state: Santa Fe

address: Suipacha 531

department: Biological Sciences

country: Argentina

institute: Universidad Nacional de Rosario

description: Microarray hybridization was used to assess UV-B responses in both directly exposed and shielded tissues of a maize line deficient in anthocyanin accumulation.  Among 347 transcripts found to be regulated after 8 h of high UV-B irradiation, 285 were increased significantly in at least one organ but only 80 were down-regulated by UV-B.  Although some genes were regulated by UV-B in more than one sample, most UV-B regulated genes were organ-specific.  A larger number of transcript changes occurred in directly exposed than in shielded organs, and more transcripts levels were changed in adult than in seedling tissues.  Because shielded tissues including roots, immature ears, and leaves covered with a plastic that absorbs UV-B exhibited altered transcriptome profiles after plant exposure to UV-B, some signal(s) must be transmitted from irradiated to shielded tissues.   The time course of transcript abundance changes monitored by RNA blot hybridization and real time RT-PCR indicated that the response kinetics to UV-B are very rapid as some transcript levels are altered within 1 h exposure, in both exposed and shielded tissues.   As the same total UV-B irradiation dose applied at three intensities elicited different transcript profiles, transcriptome changes do not show reciprocity.  Confirming and extending prior microarray hybridization results, supplemental UV-B increased expression of stress response and ribosomal protein genes, while photosynthesis-associated genes were down regulated in adult leaves.

organism: Zea mays

source_name: control

source_name: UV-B exposed


title: 11552T

description:
Probe Generation
Probes were generated from three independent BV2 cultures treated with freshly sonicated Abeta-42 peptide (California Peptide) along with controls. Briefly, mRNA was isolated from those cells as described previously.  Double-stranded cDNA (ds-cDNA) was generated by reverse transcription and second-strand synthesis, and digested with RsaI (New England Biolabs, Beverly, MA). Probes were generated through labeling with 33P-dCTP (Perkin Elmer Lifesciences, Boston, MA) using a Decamer labeling kit (Ambion, Austin, Texas).
Filter Hybridization
Hybridization of probes to filters was performed at 42.C for 24 hr in a hybridization solution containing 50% formamide.
Data Collection
A Cyclone phosphorimaging system (Packard Biosciences, Meriden, CT) and GenePix software analysis (GenePix Pro 3.0.6.24, Axon Instruments, Foster City, CA) were used to obtain densitometry of the 33P signal.
Sample_normalization_factor: 71
Sample_probe_id: 466


title: 07886E2

description:
Probe Generation
Probes were generated from three independent BV2 cultures treated with freshly sonicated Abeta-42 peptide (California Peptide) along with controls. Briefly, mRNA was isolated from those cells as described previously.  Double-stranded cDNA (ds-cDNA) was generated by reverse transcription and second-strand synthesis, and digested with RsaI (New England Biolabs, Beverly, MA). Probes were generated through labeling with 33P-dCTP (Perkin Elmer Lifesciences, Boston, MA) using a Decamer labeling kit (Ambion, Austin, Texas).
Filter Hybridization
Hybridization of probes to filters was performed at 42.C for 24 hr in a hybridization solution containing 50% formamide.
Data Collection
A Cyclone phosphorimaging system (Packard Biosciences, Meriden, CT) and GenePix software analysis (GenePix Pro 3.0.6.24, Axon Instruments, Foster City, CA) were used to obtain densitometry of the 33P signal.
Sample_normalization_factor: 59
Sample_probe_id: 470


title: 11552S

description:
Probe Generation
Probes were generated from three independent BV2 cultures treated with freshly sonicated Abeta-42 peptide (California Peptide) along with controls. Briefly, mRNA was isolated from those cells as described previously.  Double-stranded cDNA (ds-cDNA) was generated by reverse transcription and second-strand synthesis, and digested with RsaI (New England Biolabs, Beverly, MA). Probes were generated through labeling with 33P-dCTP (Perkin Elmer Lifesciences, Boston, MA) using a Decamer labeling kit (Ambion, Austin, Texas).
Filter Hybridization
Hybridization of probes to filters was performed at 42.C for 24 hr in a hybridization solution containing 50% formamide.
Data Collection
A Cyclone phosphorimaging system (Packard Biosciences, Meriden, CT) and GenePix software analysis (GenePix Pro 3.0.6.24, Axon Instruments, Foster City, CA) were used to obtain densitometry of the 33P signal.
Sample_normalization_factor: 69
Sample_probe_id: 466


title: adult leaf-8h UV-B

source_name: UV-B exposed leaves

source_name: control leaves


title: adult leaf-UV-B exposed leves covered withCA and PE bag

source_name: leaf covered with CA bag

source_name: leaf covered with PE bag


title: 11548P

description:
Probe Generation
Probes were generated from three independent BV2 cultures treated with freshly sonicated Abeta-42 peptide (California Peptide) along with controls. Briefly, mRNA was isolated from those cells as described previously.  Double-stranded cDNA (ds-cDNA) was generated by reverse transcription and second-strand synthesis, and digested with RsaI (New England Biolabs, Beverly, MA). Probes were generated through labeling with 33P-dCTP (Perkin Elmer Lifesciences, Boston, MA) using a Decamer labeling kit (Ambion, Austin, Texas).
Filter Hybridization
Hybridization of probes to filters was performed at 42.C for 24 hr in a hybridization solution containing 50% formamide.
Data Collection
A Cyclone phosphorimaging system (Packard Biosciences, Meriden, CT) and GenePix software analysis (GenePix Pro 3.0.6.24, Axon Instruments, Foster City, CA) were used to obtain densitometry of the 33P signal.
Sample_normalization_factor: 49
Sample_probe_id: 451

source_name: BV2, Abeta, 24h, control


title: C023 Renal Clear Cell Carcinoma U133B

city: Boston

first: Marc

middle: E.

last: Lenburg

state: MA

address: 715 Albany Street, E613B

department: Genetics and Genomics

institute: Boston University School of Medicine

description:
Age = 72; Gender = Female; Right Kidney; Tumor Type = clear cell; Tumor Fuhrman Grade = 1; Tumor Capsule Penetration = true; Tumor Perinephric Fat Invasion = false; Tumor Renal Sinus Invasion = false; Tumor Renal Vein Invasion = false; Tumor Location: mid; Scaling Target = 500; Scaling Factor = 13.59; Raw Q = 2.52; Noise = 3.01; Background = 58.41.
Keywords = kidney
Keywords = renal
Keywords = RCC
Keywords = carcinoma
Keywords = cancer
Lot batch = 2002912

source_name: Trizol isolation of total RNA from Renal Clear Cell Carcinoma tissue


title: seedling leaf-8h UV-B

source_name: control leaves (-)UV-B


title: 11548Z

description:
Probe Generation
Probes were generated from three independent BV2 cultures treated with freshly sonicated Abeta-42 peptide (California Peptide) along with controls. Briefly, mRNA was isolated from those cells as described previously.  Double-stranded cDNA (ds-cDNA) was generated by reverse transcription and second-strand synthesis, and digested with RsaI (New England Biolabs, Beverly, MA). Probes were generated through labeling with 33P-dCTP (Perkin Elmer Lifesciences, Boston, MA) using a Decamer labeling kit (Ambion, Austin, Texas).
Filter Hybridization
Hybridization of probes to filters was performed at 42.C for 24 hr in a hybridization solution containing 50% formamide.
Data Collection
A Cyclone phosphorimaging system (Packard Biosciences, Meriden, CT) and GenePix software analysis (GenePix Pro 3.0.6.24, Axon Instruments, Foster City, CA) were used to obtain densitometry of the 33P signal.
Sample_normalization_factor: 97
Sample_probe_id: 468


title: 11548Y

description:
Probe Generation
Probes were generated from three independent BV2 cultures treated with freshly sonicated Abeta-42 peptide (California Peptide) along with controls. Briefly, mRNA was isolated from those cells as described previously.  Double-stranded cDNA (ds-cDNA) was generated by reverse transcription and second-strand synthesis, and digested with RsaI (New England Biolabs, Beverly, MA). Probes were generated through labeling with 33P-dCTP (Perkin Elmer Lifesciences, Boston, MA) using a Decamer labeling kit (Ambion, Austin, Texas).
Filter Hybridization
Hybridization of probes to filters was performed at 42.C for 24 hr in a hybridization solution containing 50% formamide.
Data Collection
A Cyclone phosphorimaging system (Packard Biosciences, Meriden, CT) and GenePix software analysis (GenePix Pro 3.0.6.24, Axon Instruments, Foster City, CA) were used to obtain densitometry of the 33P signal.
Sample_normalization_factor: 106
Sample_probe_id: 468


title: 11548A2

description:
Probe Generation
Probes were generated from three independent BV2 cultures treated with freshly sonicated Abeta-42 peptide (California Peptide) along with controls. Briefly, mRNA was isolated from those cells as described previously.  Double-stranded cDNA (ds-cDNA) was generated by reverse transcription and second-strand synthesis, and digested with RsaI (New England Biolabs, Beverly, MA). Probes were generated through labeling with 33P-dCTP (Perkin Elmer Lifesciences, Boston, MA) using a Decamer labeling kit (Ambion, Austin, Texas).
Filter Hybridization
Hybridization of probes to filters was performed at 42.C for 24 hr in a hybridization solution containing 50% formamide.
Data Collection
A Cyclone phosphorimaging system (Packard Biosciences, Meriden, CT) and GenePix software analysis (GenePix Pro 3.0.6.24, Axon Instruments, Foster City, CA) were used to obtain densitometry of the 33P signal.
Sample_normalization_factor: 101
Sample_probe_id: 468


title: whole scagcm1

status: Public on Oct 28 2003

city: Basel

first: Haiqiong

last: Montalta-He

address: Klingelbergstrasse 50/70

department: Developmental Neurobiology

country: Switzerland

institute: Institute of Zoology

description:
We report here the application of magnetic cell separation in microarray experiment to understand Drosophila gliogenesis during early embryogenesis. At stage 11, neuroectodermal cells were labeled by a fusion transmembrane protein, mCD8-GFP, in the wild-type embryos as wells as in the embryos where glide/gcm was overexpressed. Following the cell dissociation, neuroectodermal cells were purified by using the commercial available anti-mCD8 microbeads. Microarray experiments based on prepared neuroectodermal cells from wild-type embryos verse glide/gcm overexpressed embryos at stage 11 have revealed 76 gene differentially regulated by overexpression of glide/gcm.
Among them, there are 11 genes have already been shown to be regulated by glide/gcm in the previous publications. Additionally, we have identified 4 more new glide/gcm-regulated genes by in situ hybridization or immunohistochemical staining. It is very convincing that reduction of the tissue complexity by cell purification leads to low false positives in microarray experiment.

organism: Drosophila melanogaster

source_name: embryos


title: 11548S

description:
Probe Generation
Probes were generated from three independent BV2 cultures treated with freshly sonicated Abeta-42 peptide (California Peptide) along with controls. Briefly, mRNA was isolated from those cells as described previously.  Double-stranded cDNA (ds-cDNA) was generated by reverse transcription and second-strand synthesis, and digested with RsaI (New England Biolabs, Beverly, MA). Probes were generated through labeling with 33P-dCTP (Perkin Elmer Lifesciences, Boston, MA) using a Decamer labeling kit (Ambion, Austin, Texas).
Filter Hybridization
Hybridization of probes to filters was performed at 42.C for 24 hr in a hybridization solution containing 50% formamide.
Data Collection
A Cyclone phosphorimaging system (Packard Biosciences, Meriden, CT) and GenePix software analysis (GenePix Pro 3.0.6.24, Axon Instruments, Foster City, CA) were used to obtain densitometry of the 33P signal.
Sample_normalization_factor: 158
Sample_probe_id: 466


title: 07886A2

description:
Probe Generation
Probes were generated from three independent BV2 cultures treated with freshly sonicated Abeta-42 peptide (California Peptide) along with controls. Briefly, mRNA was isolated from those cells as described previously.  Double-stranded cDNA (ds-cDNA) was generated by reverse transcription and second-strand synthesis, and digested with RsaI (New England Biolabs, Beverly, MA). Probes were generated through labeling with 33P-dCTP (Perkin Elmer Lifesciences, Boston, MA) using a Decamer labeling kit (Ambion, Austin, Texas).
Filter Hybridization
Hybridization of probes to filters was performed at 42.C for 24 hr in a hybridization solution containing 50% formamide.
Data Collection
A Cyclone phosphorimaging system (Packard Biosciences, Meriden, CT) and GenePix software analysis (GenePix Pro 3.0.6.24, Axon Instruments, Foster City, CA) were used to obtain densitometry of the 33P signal.
Sample_normalization_factor: 43
Sample_probe_id: 468


title: 07886T

description:
Probe Generation
Probes were generated from three independent BV2 cultures treated with freshly sonicated Abeta-42 peptide (California Peptide) along with controls. Briefly, mRNA was isolated from those cells as described previously.  Double-stranded cDNA (ds-cDNA) was generated by reverse transcription and second-strand synthesis, and digested with RsaI (New England Biolabs, Beverly, MA). Probes were generated through labeling with 33P-dCTP (Perkin Elmer Lifesciences, Boston, MA) using a Decamer labeling kit (Ambion, Austin, Texas).
Filter Hybridization
Hybridization of probes to filters was performed at 42.C for 24 hr in a hybridization solution containing 50% formamide.
Data Collection
A Cyclone phosphorimaging system (Packard Biosciences, Meriden, CT) and GenePix software analysis (GenePix Pro 3.0.6.24, Axon Instruments, Foster City, CA) were used to obtain densitometry of the 33P signal.
Sample_normalization_factor: 95
Sample_probe_id: 466


title: 07886Y

description:
Probe Generation
Probes were generated from three independent BV2 cultures treated with freshly sonicated Abeta-42 peptide (California Peptide) along with controls. Briefly, mRNA was isolated from those cells as described previously.  Double-stranded cDNA (ds-cDNA) was generated by reverse transcription and second-strand synthesis, and digested with RsaI (New England Biolabs, Beverly, MA). Probes were generated through labeling with 33P-dCTP (Perkin Elmer Lifesciences, Boston, MA) using a Decamer labeling kit (Ambion, Austin, Texas).
Filter Hybridization
Hybridization of probes to filters was performed at 42.C for 24 hr in a hybridization solution containing 50% formamide.
Data Collection
A Cyclone phosphorimaging system (Packard Biosciences, Meriden, CT) and GenePix software analysis (GenePix Pro 3.0.6.24, Axon Instruments, Foster City, CA) were used to obtain densitometry of the 33P signal.
Sample_normalization_factor: 50
Sample_probe_id: 468


title: 07886Z


title: 11548T

description:
Probe Generation
Probes were generated from three independent BV2 cultures treated with freshly sonicated Abeta-42 peptide (California Peptide) along with controls. Briefly, mRNA was isolated from those cells as described previously.  Double-stranded cDNA (ds-cDNA) was generated by reverse transcription and second-strand synthesis, and digested with RsaI (New England Biolabs, Beverly, MA). Probes were generated through labeling with 33P-dCTP (Perkin Elmer Lifesciences, Boston, MA) using a Decamer labeling kit (Ambion, Austin, Texas).
Filter Hybridization
Hybridization of probes to filters was performed at 42.C for 24 hr in a hybridization solution containing 50% formamide.
Data Collection
A Cyclone phosphorimaging system (Packard Biosciences, Meriden, CT) and GenePix software analysis (GenePix Pro 3.0.6.24, Axon Instruments, Foster City, CA) were used to obtain densitometry of the 33P signal.
Sample_normalization_factor: 145
Sample_probe_id: 466


title: 11548U

description:
Probe Generation
Probes were generated from three independent BV2 cultures treated with freshly sonicated Abeta-42 peptide (California Peptide) along with controls. Briefly, mRNA was isolated from those cells as described previously.  Double-stranded cDNA (ds-cDNA) was generated by reverse transcription and second-strand synthesis, and digested with RsaI (New England Biolabs, Beverly, MA). Probes were generated through labeling with 33P-dCTP (Perkin Elmer Lifesciences, Boston, MA) using a Decamer labeling kit (Ambion, Austin, Texas).
Filter Hybridization
Hybridization of probes to filters was performed at 42.C for 24 hr in a hybridization solution containing 50% formamide.
Data Collection
A Cyclone phosphorimaging system (Packard Biosciences, Meriden, CT) and GenePix software analysis (GenePix Pro 3.0.6.24, Axon Instruments, Foster City, CA) were used to obtain densitometry of the 33P signal.
Sample_normalization_factor: 140
Sample_probe_id: 466


title: whole scagcm2


title: whole scagcm3


title: whole control3


title: whole scagcm4


title: whole control2


title: whole control1


title: 07886U

description:
Probe Generation
Probes were generated from three independent BV2 cultures treated with freshly sonicated Abeta-42 peptide (California Peptide) along with controls. Briefly, mRNA was isolated from those cells as described previously.  Double-stranded cDNA (ds-cDNA) was generated by reverse transcription and second-strand synthesis, and digested with RsaI (New England Biolabs, Beverly, MA). Probes were generated through labeling with 33P-dCTP (Perkin Elmer Lifesciences, Boston, MA) using a Decamer labeling kit (Ambion, Austin, Texas).
Filter Hybridization
Hybridization of probes to filters was performed at 42.C for 24 hr in a hybridization solution containing 50% formamide.
Data Collection
A Cyclone phosphorimaging system (Packard Biosciences, Meriden, CT) and GenePix software analysis (GenePix Pro 3.0.6.24, Axon Instruments, Foster City, CA) were used to obtain densitometry of the 33P signal.
Sample_normalization_factor: 40
Sample_probe_id: 466


title: sortedcontrol2

source_name: sorted neuroectodermal cells


title: sorted scagcm3


title: whole control4


title: sorted scagcm4


title: 07886S

description:
Probe Generation
Probes were generated from three independent BV2 cultures treated with freshly sonicated Abeta-42 peptide (California Peptide) along with controls. Briefly, mRNA was isolated from those cells as described previously.  Double-stranded cDNA (ds-cDNA) was generated by reverse transcription and second-strand synthesis, and digested with RsaI (New England Biolabs, Beverly, MA). Probes were generated through labeling with 33P-dCTP (Perkin Elmer Lifesciences, Boston, MA) using a Decamer labeling kit (Ambion, Austin, Texas).
Filter Hybridization
Hybridization of probes to filters was performed at 42.C for 24 hr in a hybridization solution containing 50% formamide.
Data Collection
A Cyclone phosphorimaging system (Packard Biosciences, Meriden, CT) and GenePix software analysis (GenePix Pro 3.0.6.24, Axon Instruments, Foster City, CA) were used to obtain densitometry of the 33P signal.
Sample_normalization_factor: 75
Sample_probe_id: 466


title: sorted scagcm1


title: sorted control1


title: sortedcontrol4


title: sorted scagcm2


title: sortedcontrol3


title: PGA_Ras_3-m5

status: Public on Oct 24 2003

city: Cambridge

first: Martina

last: Schinke

address: 7 Divinity Ave

department: Bauer Center for Genomic Research

institute: Harvard University

description:
Mice heterozygous for dn-p21 littermates were sacrificed at 10 weeks of age. Ventricles were isolated and snap-frozen in liquid nitrogen.  Use 3 month old FVB Females as controls.  [GSM2334, GSM2335, GSM2336]
Read more at http://cardiogenomics.med.harvard.edu/groups/proj1/pages/ras_home.html
Keywords = ras
Keywords = dilated cardiomyopathy

organism: Mus musculus

source_name: Both ventricles of heart


title: PGA_Ras_1-m5

description:
Mice heterozygous for dn-p21 littermates were sacrificed at 10 weeks of age. Ventricles were isolated and snap-frozen in liquid nitrogen.  Use 3 month old FVB Females as controls.  [GSM2334, GSM2335, GSM2336]
Read more at http://cardiogenomics.med.harvard.edu/groups/proj1/pages/ras_home.html
Keywords = ras
Keywords = dilated cardiomyopathy
Keywords = cardiomyopathy

source_name: both ventricles of heart


title: PGA_Ras_2-m5


title: PGA_MI_nilv_8w_332

description:
This dataset is a time series (1 hour [h], 4 hours, 24 hours, 48 hours, 1 week [w], and 8 weeks) intended to compare normal functioning left ventricles [lv + lv2] with infarcted [ilv] and non-infarcted left ventricles [nilv].  Ilv samples are taken from the region between the LAD artery and the apex on a mouse with myocardial infarction.  Lv2 samples are from the same region in a sham operated mouse.  Nilv samples are taken from the region above the infartion and the left ventricle [lv] samples mimic that region in a sham mouse.  The lv and lv2 samples can be compared as both are from normal functioning hearts.  For more information visit http://cardiogenomics.med.harvard.edu/groups/proj1/pages/mi_home.html
Keywords = acute myocardial infarction, AMI, cardiac

source_name: Region of the left ventricle above the infarction (above the LAD artery)


title: PGA_MI_nilv_8w_311


title: PGA_MI_nilv_4h_391


title: PGA_MI_nilv_48h_355


title: 07886F2

description:
Probe Generation
Probes were generated from three independent BV2 cultures treated with freshly sonicated Abeta-42 peptide (California Peptide) along with controls. Briefly, mRNA was isolated from those cells as described previously.  Double-stranded cDNA (ds-cDNA) was generated by reverse transcription and second-strand synthesis, and digested with RsaI (New England Biolabs, Beverly, MA). Probes were generated through labeling with 33P-dCTP (Perkin Elmer Lifesciences, Boston, MA) using a Decamer labeling kit (Ambion, Austin, Texas).
Filter Hybridization
Hybridization of probes to filters was performed at 42.C for 24 hr in a hybridization solution containing 50% formamide.
Data Collection
A Cyclone phosphorimaging system (Packard Biosciences, Meriden, CT) and GenePix software analysis (GenePix Pro 3.0.6.24, Axon Instruments, Foster City, CA) were used to obtain densitometry of the 33P signal.
Sample_normalization_factor: 28
Sample_probe_id: 470


title: PGA_MI_nilv_1h_395


title: PGA_MI_nilv_4h_390


title: PGA_MI_nilv_1w_662


title: PGA_MI_nilv_24h_360


title: PGA_MI_nilv_1w_670


title: PGA_MI_nilv_24h_362


title: PGA_MI_nilv_48h_354


title: PGA_MI_nilv_8w_326


title: PGA_MI_ilv_48h_355

source_name: Region of the heart between the LAD artery and the apex on a mouse with myocardial infarction (The infarcted area)


title: PGA_MI_nilv_1h_394


title: PGA_MI_nilv_48h_351


title: PGA_MI_nilv_1h_392


title: PGA_MI_ilv_8w_332


title: PGA_MI_ilv_8w_311


title: PGA_MI_nilv_4h_389


title: PGA_MI_ilv_8w_326


title: PGA_MI_ilv_24h_363


title: PGA_MI_ilv_48h_354


title: PGA_MI_nilv_24h_361


title: PGA_MI_ilv_4h_389


title: PGA_MI_ilv_24h_361


title: PGA_MI_ilv_4h_391


title: PGA_MI_nilv_1w_663


title: PGA_MI_ilv_48h_351


title: PGA_MI_ilv_4h_390


title: PGA_MI_ilv_24h_360


title: PGA_MI_ilv_1w_670


title: PGA_MI_ilv_1w_663


title: PGA_MI_ilv_1w_662


title: PGA-RnSalt_h_6w_1-2-m5

description:
Dahl salt-sensitive (DS) rats were obtained from Harlan Sprague Dawley Laboratory at 5 weeks of age. At 6 weeks of age, physiologic cardiac hypertrophy was generated by a vigorous daily exercise regimen for 6 weeks (e group). The exercise protocol is based on those described previously with modifications (Wisloff U et al., 2001; Jin H et al., 1994). Rats were exercised daily for 6 weeks on a rodent treadmill (Exer-6M; Columbus Instruments). The exercise program consisted of three weeks of progressively strenuous exercise regimens; followed by three weeks of maintenance period, during which the rats were exercised at 16 m/min at a 5o incline for 90 minutes/day.  All rats completed the exercise protocol.  Pathological cardiac hypertrophy was generated by feeding a 6% NaCl diet to DS rats at 6 weeks of age (h group) (Inoko M et al., 1994).  Control rats (c group) were age matched and sedentary DS rats fed normal rat chow.
Read more at http://cardiogenomics.med.harvard.edu/groups/proj1/pages/rat_home.html
Keywords = physiological hypertrophy, pathological hypertrophy, rat, heart failure, cardiomyopathy

organism: Rattus norvegicus

source_name: Left ventricle in heart


title: PGA-RnSalt_h_6w_2-m5


title: PGA-RnSalt_h_3w_1-m5


title: PGA-lv2_1w_674

source_name: Region of the left ventricle [lv2] below the LAD artery of a sham operated mouse


title: PGA-RnSalt_h_3w_2-m5


title: PGA-RnSalt_h_6w_3-m5


title: PGA-RnSalt_h_3w_3-m5


title: PGA_MI_ilv_1h_392


title: PGA-lv_8w_340

description:
This dataset is a time series (1 hour [h], 4 hours, 24 hours, 48 hours, 1 week [w], and 8 weeks) intended to compare normal functioning left ventricles [lv + lv2] with infarcted [ilv] and non-infarcted left ventricles [nilv].  Ilv samples are taken from the region between the LAD artery and the apex on a mouse with myocardial infarction.  Lv2 samples are from the same region in a sham operated mouse.  Nilv samples are taken from the region above the infartion and the lv samples mimic that region in a sham mouse.  The lv and lv2 samples can be compared as both are from normal functioning hearts.  For more information visit http://cardiogenomics.med.harvard.edu/groups/proj1/pages/mi_home.html
Keywords = acute myocardial infarction, AMI, cardiac

source_name: Region of the left ventricle [lv] above the LAD artery of a sham operated mouse


title: PGA-RnSalt_h_15w_3-m5


title: PGA_MI_ilv_1h_395


title: PGA_MI_ilv_1h_394


title: PGA-lv2_1h_514


title: PGA-lv2_48h_519


title: PGA-lv_8w_339


title: PGA-RnSalt_e_6w_2-m5


title: PGA-RnSalt_h_15w_1-m5


title: PGA-lv2_24h_517


title: PGA-RnSalt_e_6w_3-m5


title: PGA-lv_8w_329


title: PGA-lv_4h_507


title: PGA-lv_4h_506


title: PGA-lv2_4h_506


title: PGA-lv_4h_509


title: PGA-RnSalt_e_6w_1-3-m5


title: PGA-RnSalt_h_15w_2-m5


title: PGA-RnSalt_e_3w_3-m5


title: PGA-lv_48h_520


title: PGA-RnSalt_e_3w_2-m5


title: PGA-lv_48h_519


title: PGA-RnSalt_c_6w_1-2-m5

description:
Dahl salt-sensitive (DS) rats were obtained from Harlan Sprague Dawley Laboratory at 5 weeks of age. At 6 weeks of age, physiologic cardiac hypertrophy was generated by a vigorous daily exercise regimen for 6 weeks (e group). The exercise protocol is based on those described previously with modifications (Wisloff U et al., 2001; Jin H et al., 1994). Rats were exercised daily for 6 weeks on a rodent treadmill (Exer-6M; Columbus Instruments). The exercise program consisted of three weeks of progressively strenuous exercise regimens; followed by three weeks of maintenance period, during which the rats were exercised at 16 m/min at a 5o incline for 90 minutes/day.  All rats completed the exercise protocol.  Pathological cardiac hypertrophy was generated by feeding a 6% NaCl diet to DS rats at 6 weeks of age (h group) (Inoko M et al., 1994).  Control rats (c group) were age matched and sedentary DS rats fed normal rat chow.  Read more at http://cardiogenomics.med.harvard.edu/groups/proj1/pages/rat_home.html
Keywords = physiological hypertrophy
Keywords = pathological hypertrophy
Keywords = rat
Keywords = heart failure
Keywords = cardiomyopathy


title: PGA-RnSalt_c_15w_3-m5


title: PGA-RnSalt_c_3w_1-m5


title: PGA-RnSalt_c_6w_2-m5


title: PGA-lv_1w_651


title: PGA-lv_1w_672


title: PGA-RnSalt_c_6w_3-m5


title: PGA-RnSalt_e_3w_1-m5


title: PGA-lv_48h_518


title: PGA-lv_1h_514

source_name: Region of the left ventricle above the LAD artery of a sham operated mouse


title: D2-Hevec 99 _ 1.2II

status: Public on Oct 18 2003

city: Toulouse

first: Delphine-Armelle

last: Lacorre

address: 205, route de Narbonne

department: Protéome et Cibles Thérapeutiques

country: France

institute: IPBS - CNRS UMR 5089

description:
RNA were extracted from purified high endothelial venule endothelial cells grown ex vivo for two days, using an RNeasy extraction kit (QIAgen)
Keywords = tonsil
Keywords = HEVEC
Keywords = dedifferentiated
Lot batch = lot 0040008 / batch 66

source_name: tonsils, high endothelial venule endothelial cells


title: D0-Hevec 4

description:
RNA were extracted from freshly purified tonsillar high endothelial venule endothelial cells using an RNeasy extraction kit (QIAgen)
Keywords = tonsil
Keywords = HEVEC
Lot batch = lot 0030458 / batch 48


title: D0-Huvec

description:
RNA were extracted from freshly purified umbilical vein endothelial cells using an RNeasy extraction kit (QIAgen)
Keywords = HUVEC
Keywords = freshly purified
Lot batch = lot 0030458 / batch 48

source_name: umbilical cord, umbilical vein endothelial cells


title: D2-Hevec 99

description:
RNA were extracted from purified tonsillar high endothelial venule endothelial cells grown ex vivo for two days, using an RNeasy extraction kit (QIAgen)
Keywords = tonsil
Keywords = HEVEC
Keywords = dedifferentiated
Lot batch = lot 0030458 / batch 48

source_name: tonsils, dedifferentiated high endothelial venule endothelial cells


title: D0-Huvec _ 1.2I

description:
RNA were extracted from freshly purified umbilical vein endothelial cells using an RNeasy extraction kit (QIAgen)
Keywords = HUVEC
Lot batch = lot 0040008 / batch 156

source_name: umbilical vein endothelial cells


title: D0-huvec _ 1.2II

description:
RNA were extracted from freshly purified umbilical vein endothelial cells using an RNeasy extraction kit (QIAgen)
Keywords = HUVEC
Lot batch = lot 0040008 / batch 66

source_name: umbilical vein endothelial ells


title: D2-Hevec 97

description:
RNA were extracted from purified tonsillar high endothelial venule endothelial cells grown ex vivo for two days, using an RNA easy extraction kit (QIAgen)
Keywords = tonsil
Keywords = HEVEC
Keywords = dedifferentiated
Lot batch = lot 0030458 / batch 47


title: PGA-RnSalt_c_15w_1-m5

source_name: Left ventricle of heart


title: PGA-lv_1h_512

description:
This dataset is a time series and is intended to be used as a control for the non-infarcted left ventricle samples (same region of heart on a mouse with myocardial infarction) and the infarcted left ventricle samples (region between the LAD artery and the apex on a mouse with myocardial infarction).  For more information visit http://cardiogenomics.med.harvard.edu/groups/proj1/pages/mi_home.html
Keywords = acute myocardial infarction, AMI, cardiac


title: D0-Hevec 4 _ 1.2II

description:
RNA were extracted from freshly purified high endothelial venule endothelial cells using an RNeasy extraction kit (QIAgen)
Keywords = tonsil
Keywords = HEVEC
Lot batch = lot 1030710 / batch 162


title: D2-hevec 99 _ 1.2I

description:
RNA were extracted from purified tonsillar high endothelial venule endothelial cells grown ex vivo for two days, using an RNeasy extraction kit (QIAgen)
Keywords = tonsil
Keywords = HEVEC
Keywords = dedifferentiated
Lot batch = lot 0040008 / batch 156

source_name: tonsils, high endothelial venule enothelial cells


title: PGA-lv_1h_511

description:
This dataset is a time series and is intended to be used as a control for the non-infarcted left ventricle samples (same region of heart on a mouse with myocardial infarction) and the infarcted left ventricle samples (region between the LAD artery and the apex on a mouse with myocardial infarction).  For more information visit http://cardiogenomics.med.harvard.edu/groups/proj1/pages/mi_home.html
Keywords = acute myocardial infarction
Keywords = AMI
Keywords = cardiac


title: PGA-RnSalt_c_3w_3-m5


title: PGA-RnSalt_c_15w_2-m5


title: PGA-lv_24h_517


title: PGA-lv_24h_515


title: PGA-RnSalt_c_3w_2-m5


title: PGA-lv_1w_674


title: PGA-lv_24h_510


title: D2-Hevec 97 _ 1.2I

description:
RNA were extracted from purified tonsillar high endothelial venule endothelial cells grown ex vivo for two days, using an RNeasy extraction kit (QIAgen)
Keywords = tonsil
Keywords = HEVEC
Keywords = dedifferentiated
Lot batch = lot 0040008 / batch 155


title: D0-Hevec 2 _ 1.2I

description:
RNA were extracted from freshly purified tonsillar high endothelial venule endothelial cells using an RNeasy extraction kit (QIAgen)
Keywords = tonsil
Keywords = HEVEC
Lot batch = lot 1030706 / batch b53


title: D0-Hevec 1

description:
RNAtot were extracted from freshly purified tonsillar high endothelial venule endothelial cells using an RNeasy extraction kit (QIAgen)
Keywords = tonsil
Keywords = HEVEC
Lot batch = lot 0030458 / batch 47


title: D0-Hevec 2

description:
RNA were extracted from freshly purified tonsillar high endothelial venule endothelial cells using an RNeasy extraction kit (QIAgen)
Keywords = tonsil
Keywords = HEVEC
Lot batch = lot 0101258 / batch 111


title: D0-Hevec 4 _ 1.2I

description:
RNA were extracted from freshly purified tonsillar high endothelial venule endothelial cells using an RNeasy extraction kit (QIAgen)
Keywords = tonsil
Keywords = HEVEC
Lot batch = lot 1030706 / batch b54


title: D0-hevec 2 _ 1.2II

description:
RNA were extracted from freshly purified tonsillar high endothelial venule endothelial cells using an RNeasy extraction kit (QIAgen)
Keywords = tonsil
Keywords = HEVEC
Lot batch = lot 1030710 / batch 161


title: Control 11

status: Public on Oct 16 2003

city: Philadelphia

first: Roderic

last: Eckenhoff

state: PA

institute: University of Pennsylvania

description:
3 min exposure to halothane prior to immediate perfusion with ice cold saline
Keywords = Eckenhoff
Keywords = anesthetics

source_name: whole brain


title: Normal_1975

status: Public on Oct 17 2003

city: Sacramento

first: Jeffrey

last: Gregg

institute: University of California, Davis School of Medicine

description: Tissue transferred into RNAlater within 30 minutes of removal, and frozen at -20C

source_name: uterine normal myometrium


title: Control 12


title: Normal_2222


title: Control 10


title: Gene expression regulated by DACH1-9

status: Public on Oct 15 2003

city: Georgetown

first: Kongming

last: Wu

state: DC

address: 3970 Reservoir Rd, NW

department: Lombardi Cancer Center & Department of Oncology

institute: Georgetown University

description: MDA-MB-231 transfected with EGRE3-VgRXR and pIND-DACH1, selected by Zeocin and G418. Induced DACH1 expression was confirmed by western blot.

source_name: MDA-MB-231 cell


title: Normal_2010


title: Fibroid_2192

source_name: uterine leiomyoma


title: Gene expression regulated by DACH1-5


title: Gene expression regulated by DACH1-2

description:
MDA-MB-231 cells was transfected with pIND-DACH1 and EGRE5-VgRxR, and selected by Zeocin and G418.
Keywords = DACH1
Keywords = gene expression


title: Gene expression regulated by DACH1-4

source_name: MDA-MB-231 DACH1 cell


title: Fibroid_2525C


title: Gene expression regulated by DACH1-8


title: Fibroid_2540B


title: Gene expression regulated by DACH1-1

description:
MDA-MB-231 transfected with EGRE3-VgRXR and pIND-DACH1, selected by Zeocin and G418. Induced DACH1 expression was confirmed by western blot.
Keywords = DACH1
Keywords = Gene expression


title: Gene expression regulated by DACH1-3


title: Gene expression regulated by DACH1-7

source_name: MDA-MB-231 cells


title: Normal_2169


title: Fibroid_2540A


title: Fibroid_2525A


title: Normal_1801

description: Tissue transferred into RNAlater within 30 minutes of removal, and frozen at -20C.


title: gene expression regulated by DACH1-6


title: Rejecting allografts 7 days No.2

status: Public on Oct 14 2003

city: Meguro-ku

first: Yuichi

last: Matsui

state: Tokyo

address: Komaba 4-6-1

department: Biology

country: Japan

institute: University of Tokyo

description: Balb/c to C57/BL6

source_name: transplanted heart


title: Tolerizing allografts 70 days No.2

description: Balb/c to C57/BL6 with anti CD80/86 mAb


title: Rejecting allografts 7 days No.1

description: Balb/c to C57/BL6


title: Isograft 7 days No.2

description: C57/BL6 to C57/BL6


title: Tolerizing allografts 7 days No.1

description: Balb/c to C57/BL6 with anti CD80/86 mAb


title: Isograft 7 days No.1

description: C57/BL6 to C57/BL6


title: Tolerizing allografts 70 days No.3

description: Balb/c to C57/BL6 with anti CD80/86 mAb


title: Tolerizing allografts 7 days No.3

description: Balb/c to C57/BL6 with anti CD80/86 mAb


title: Isograft 70 days No.1

description: C57/BL6 to C57/BL6


title: Isograft 70 days No.2

description: C57/BL6 to C57/BL6


title: Rejecting allografts 7 days No.3

description: Balb/c to C57/BL6


title: Tolerizing allografts 70 days No.1

description: Balb/c to C57/BL6 with anti CD80/86 mAb


title: Isograft 7 days No.3

description: C57/BL6 to C57/BL6


title: Lung Array Mouse A Set 4

status: Public on Oct 08 2003

city: La Jolla

first: Jih-tung

last: Pai

institute: The Burnham Institute

description: Comparison between EC and non-EC after EC purification. RNA has been amplified.

source_name: non EC from mouse lung

source_name: EC from mouse lung


title: Kidney Mouse A Array Set 1

source_name: non EC from mouse kidney

source_name: EC from mouse kidney


title: Kidney Mouse A Array Set 2


title: Lung Array Mouse A Set 2


title: Lung Mouse B Set 5


title: 24hr post 10Gy IR

first: Kuang-Yu

last: Jen

department: Department of Pediatrics and Genetics

description: 24hr time point after 10 Gy of IR exposure

source_name: lymphoblastoid cell lines


title: 12hr post 10Gy IR

description: 12hr time point after 10 Gy of IR exposure


title: Kidney Mouse A Array Set 3


title: Lung Mouse B Set 6


title: Lung Array Mouse A Set 3


title: Lung Array Mouse A Set 1


title: Lung Mouse B Set 4


title: 6hr post 10Gy IR

description: 6hr time point after 10 Gy of IR exposure


title: Kidney Mouse A Array Set 4


title: 2hr post 10Gy IR

description: 2hr time point after 10 Gy of IR exposure


title: 24hr post 3Gy IR

description: 24hr time point after 3 Gy of IR exposure


title: Lung Mouse B Set 2


title: Control _U133A

status: Public on Oct 10 2003

city: Toronto

first: Harjit

middle: Kaur

last: Dadi

state: Ontario

address: 555 University Avenue,

department: Infection, Immunity, Injury & Repair Research

country: Canada

institute: Hospital for Sick Children

description: Gene expression data from thymocytes of a 6 month old infant.

source_name: Total RNA from Normal thymocytes.


title: Lung Mouse B Set 1


title: 1hr post 10Gy IR

description: 1hr time point after 10 Gy of IR exposure

source_name: lymphoblastoid cell  lines


title: Patient 1_ U133A

description: Gene expression data (analysed on U133A gene Chip) from thymocytes of a SCID patient.

source_name: Total RNA from thymocytes of a SCID patient


title: Lung Mouse B Set 3


title: D2-Hevec 97 _ 1.2II

description:
RNA were extracted from purified tonsillar high endothelial venule endothelial cells grown ex vivo for two days, using an RNeasy extraction kit (QIAgen)
Keywords = tonsil
Keywords = HEVEC
Keywords = dedifferentiated
Lot batch = lot 0040008 / batch 67

source_name: tonsils, high endothelial venule endothelial cells


title: Kidney Array Mouse B Set 4


title: 6hr post 3Gy IR

description: 6hr time point after 3 Gy of IR exposure


title: Kidney Array Mouse B Set 3


title: 12hr post 3Gy IR

description: 12hr time point after 3 Gy of IR exposure


title: Kidney Array Mouse B Set 2


title: 0hr post-IR

description: Non-irradiated sample


title: 1hr post 3Gy IR

description: 1hr time point after 3 Gy of IR exposure


title: 2hr post 3Gy IR

description: 2hr time point after 3 Gy of IR exposure


title: Kidney Array Mouse B Set 1


title: No IR control

description: Baseline non-irradiated sample.  All other samples are compared to this control.


title: ISR17

status: Public on Oct 04 2003

city: New York

first: Heather

middle: P.

last: Harding

state: NY

address: 540 First Ave

department: Pharmacology

institute: NYU School of Medicine

description:
ISR17-Fv2E-PERK AP20187 8hr1
RNA from an  2nm AP20187 treated (8hr) Fv2E-PERK expressing fibroblast cell line in an eIF2 alpha SS (wildtype), PERK-/- background. AP20187 activates the kinase activity of the Fv2E-PERK chimera. The PERK-/- background was used in order to obtain a cell line that expressed high levels of the Fv2E-PERK transgene. (We were unable to obtain clones with high levels of expression in wildtype cells.) The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.

Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha

source_name: Fv2E-PERK expressing mouse fibroblast cell line in an eIF2 alpha SS (wildtype), PERK-/- background


title: ISR18

description:
ISR15-Fv2E-PERK AP20187 8hr2, RNA from an 2nm AP20187 treated (8hr) Fv2E-PERK expressing fibroblast cell line in an eIF2 alpha SS (wildtype), PERK-/- background. AP20187 activates the kinase activity of the Fv2E-PERK chimera. The PERK-/- background was used in order to obtain a cell line that expressed high levels of the Fv2E-PERK transgene. (We were unable to obtain clones with high levels of expression in wildtype cells.) The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.

Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha


title: ISR16

description:
ISR16-Fv2E-PERK AP20187 4hr2
RNA from an 2 nm AP20187 treated (4hr) Fv2E-PERK expressing mouse fibroblast cell line in an eIF2 alpha SS (wildtype), PERK-/- background. AP20187 activates the kinase activity of the Fv2E-PERK chimera. The PERK-/- background was used in order to obtain a cell line that expressed high levels of the Fv2E-PERK transgene. (We were unable to obtain clones with high levels of expression in wildtype cells.) The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules
Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha


title: ISR21

description:
ISR21-Fv2E-PERK AP20187 4hr1
RNA from an 2nm AP20187 treated (4hr) Fv2E expressing fibroblast cell line in an eIF2 alpha AA (mutant) background. AP20187 activates the kinase activity of the Fv2E-PERK chimera.  The eIF2 alpha AA background was used in order to determine whether genes activated through Fv2E-PERK required eIF2alpha phosphorylation. The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.

Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha

source_name: Fv2E-PERK expressing mouse fibroblast cell line in an eIF2 alpha AA (mutant) background


title: ISR3

description:
ISR3-WT TM1
RNA from 2 ug/ml tunicamycin treated (6 hr) wildtype cells. The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.
Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha

source_name: Wildtype mouse fibroblast cell line


title: ISR6

description:
ISR6-ATF4-UT2
RNA from untreated ATF4-/- cells. The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules
Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha

source_name: ATF4-/- mouse fibroblast cell line


title: ISR13

description:
ISR13-Fv2E-PERK UT1
RNA from an Fv2E-PERK expressing mouse fibroblast cell line in an eIF2 alpha SS (wildtype), PERK-/- background.  The PERK-/- background was used in order to obtain a cell line that expressed high levels of the Fv2E-PERK transgene. (We were unable to obtain clones with high levels of expression in wildtype cells.) The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.
Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha


title: ISR9

description:
ISR9-PERK-UT1, RNA from untreated PERK-/- cells; The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.
Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha

source_name: PERK-/- mouse fibroblast cell line


title: ISR24

description:
ISR22-Fv2E-PERK AP20187 8hr2
RNA from an 2nm AP20187 treated (8hr) Fv2E expressing fibroblast cell line in an eIF2 alpha AA (mutant) background. AP20187 activates the kinase activity of the Fv2E-PERK chimera. The eIF2 alpha AA background was used in order to determine whether genes activated through Fv2E-PERK required eIF2alpha phosphorylation. The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.


title: ISR19

description:
ISR19-Fv2E-PERK UT1, RNA from an untreated Fv2E-PERK expressing fibroblast cell line in an eIF2 alpha AA (mutant) background. The eIF2 alpha AA background was used in order to determine whether genes activated through Fv2E-PERK required eIF2alpha phosphorylation.  The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.

Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha


title: ISR22

description:
ISR21-Fv2E-PERK AP20187 4hr2
RNA from an 2nm AP20187 treated (4hr) Fv2E expressing fibroblast cell line in an eIF2 alpha AA (mutant) background. AP20187 activates the kinase activity of the Fv2E-PERK chimera. The eIF2 alpha AA background was used in order to determine whether genes activated through Fv2E-PERK required eIF2alpha phosphorylation. The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.


title: Tolerizing allografts 7 days No.2

description: Balb/c to C57/BL6 with anti CD80/86 mAb


title: ISR10

description:
ISR10-PERK UT2
RNA from untreated PERK-/- cells.  The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.
Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha


title: ISR12

description:
ISR12-PERK-TM2
RNA from 2ug/ml tunicamycin treated PERK-/- cells. The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules
Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha


title: ISR4

description:
ISR4-WT TM2
RNA from 2ug/ml tunicamycin treated (6 hr) wildtype cells. The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.
Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha


title: ISR7

description:
ISR7-ATF4-TM1
RNA from 2ug/ml tunicamycin treated (6hr) ATF4-/- cells. The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.
Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha


title: ISR14

description:
ISR14-Fv2E-PERK UT2, RNA from an Fv2E-PERK expressing mouse fibroblast cell line in an eIF2 alpha SS (wildtype), PERK-/- background. The PERK-/- background was used in order to obtain a cell line that expressed high levels of the Fv2E-PERK transgene. (We were unable to obtain clones with high levels of expression in wildtype cells.) The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules
Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha


title: ISR11

description:
ISR11-PERK-TM1, RNA from 2ug/ml tunicamycin treated PERK-/- cells.  The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.
Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha

source_name: PERK -/- mouse fibroblast cell line


title: ISR23

description:
ISR22-Fv2E-PERK AP20187 8hr1
RNA from an 2nm AP20187 treated (8hr) Fv2E expressing fibroblast cell line in an eIF2 alpha AA (mutant) background. AP20187 activates the kinase activity of the Fv2E-PERK chimera. The eIF2 alpha AA background was used in order to determine whether genes activated through Fv2E-PERK required eIF2alpha phosphorylation. The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.
Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha


title: ISR8

description:
ISR8-ATF4-TM2
RNA from 2ug/ml tunicamycin treated (6hr) ATF4-/- cells; The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.

Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha


title: ISR20

description:
ISR20-Fv2E-PERK UT2
RNA from an untreated Fv2E-PERK expressing fibroblast cell line in an eIF2 alpha AA (mutant) background. The eIF2 alpha AA background was used in order to determine whether genes activated through Fv2E-PERK required eIF2alpha phosphorylation. The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.

Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha


title: ISR5

description:
ISR5-ATF4-UT1
RNA from untreated ATF4-/- cells. The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.
Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha


title: PNS WT Chip C

status: Public on Oct 02 2003

city: Ann Arbor

first: Toshihide

last: Iwashita

state: MI

address: 1500 E. Medical Center Drive

department: Internal Medicine

institute: University of Michigan

description: Average value of duplicate experiments of gut neurospheres (neurospheres of peripheral nervous system) of WT (wild type) mice (postnatal day 0). The cRNAs for hybridization were generated by two round RNA amplifications.

source_name: Gut neurospheres of WT mice


title: ISR1

description:
ISR1-WT UT1
RNA from untreated wildtype cells. The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.
Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha

source_name: WT mouse fibroblast cell line


title: ISR2

description:
ISR2-WT UT2
RNA from untreated wildtype cells. The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules
Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha


title: PNS BMI-1 KO Chip C

description: Average value of duplicate experiments of gut neurospheres (neurospheres of peripheral nervous system) of BMI-1 knockout mice (postnatal day 0). The cRNAs for hybridization were generated by two round RNA amplifications.

source_name: Gut neurospheres of BMI-1 knockout mice


title: CNS WT Chip C

description: Average value of triplicate experiments of brain neurospheres of WT (wild type) mice (postnatal day 0). The cRNAs for hybridization were generated by one round RNA amplification.

source_name: Brain neurospheres of WT mice


title: CNS BMI-1 KO Chip C

description: Average value of duplicate experiments of brain neurospheres of BMI-1 knockout mice (postnatal day 0). The cRNAs for hybridization were generated by one round RNA amplification.

source_name: Brain neurospheres of BMI-1 knockout mice


title: PNS WT Chip B


title: PNS BMI-1 KO Chip B


title: CNS WT Chip B


title: CNS BMI-1 KO ChipB

description: Average value of duplicate experiments of brain neurospheres of BMI-1 knockout mice (postnatal day 0). The cRNAs for hybridization were generated by one round RNA amplifications.


title: CNS WT

description: Average value of duplicate experiments of brain neurospheres of WT mice (postnatal day 0). The cRNAs for hybridization were generated by one round RNA amplification.


title: PNS WT


title: CNS BMI-1 KO

description: Average value of triplicate experiments of brain neurospheres of BMI-1 knockout mice (postnatal day 0). The cRNAs for hybridization were generated by one round RNA amplification.


title: PNS BMI-1 KO

description: Average value of duplicate experiments of gut neurospheres (neurospheres of peripheral nervous system) of BMI-1 Knockout mice (postnatal day 0). The cRNAs were generated by two round amplifications.


title: control for Abca1 +/- ES, RNA 80

status: Public on Sep 28 2003

city: Troy

first: Derek

last: Symula

institute: Wadsworth Center Genomics Institute

description:
ES cell line was grown on irradiated MEF feeders using standard culture conditions.  Feeders were then depleted and ES cells plated on gelatin for ~2 days.  RNA was isolated using Trizol/RNeasy, then hybridized to AffyMetrix mouse U74Av2 chip according to manufacturer's protocol.  Data were normalized by AffyMetrix MAS5.0 using defaults.
Keywords = embryonic stem cholesterol transport

source_name: ESVJ (+/+ parental of Abca1 +/-)


title: control for Abca1 +/- ES, RNA 77


title: control for Abca1 +/- ES, RNA 78


title: Time point 48h post HCMV infection

status: Public on Sep 25 2003

city: Princeton

first: Thomas

last: Shenk

state: NJ

department: Department of Molecular Biology

institute: Princeton University

description:
Array representing the response of Human foreskin fibroblasts at 48h
post HCMV infection

source_name: Human foreskin fibroblasts


title: Time point at 60min post HCMV infection

description:
Array representing the response of Human foreskin fibroblasts at 60min
post HCMV infection


title: mouse liver, RNA B9216

description:
Mice on a mixed 129/SvJ and C57BL6/J background were sacrificed and livers frozen.  RNA was isolated using RNeasy, then hybridized to AffyMetrix mouse U74Av2 chip according to manufacturer's protocol.  Data were normalized by AffyMetrix MAS5.0 using defaults.
Keywords = liver cholesterol abc

source_name: Abca1 +/- mouse liver


title: Time point at 6h post HCMV infection

description:
Array representing the response of Human foreskin fibroblasts at 6h
post HCMV infection


title: ES cell line, RNA 70

source_name: Abca1 +/- ES cell line


title: Time point at 18h post HCMV infection

description:
Array representing the response of Human foreskin fibroblasts at
18h post HCMV infection


title: Time point at 20h post HCMV infection

description:
Array representing the response of Human foreskin fibroblasts at
20h post HCMV infection


title: mouse control, liver, RNA B6477A

source_name: +/+ mouse liver


title: ES cell mutant, RNA 308

description:
Feeder-independent ES cell line was grown using standard culture conditions.  RNA was isolated using RNeasy, then hybridized to AffyMetrix mouse U74Av2 chip according to manufacturer's protocol.  Data were normalized by AffyMetrix MAS5.0 using defaults.
Keywords = embryonic stem cholesterol transport

source_name: Cdk4 +/- ES cell line


title: Time point from 30 min after HCMV infection

description:
Array representing the response of Human foreskin fibroblasts at 30 min
post HCMV infection


title: Time point at 14h post HCMV infection

description:
Array representing response of Human foreskin fibroblasts at 14h
post HCMV infection


title: ES cell line, RNA 73

description:
Abca1 +/- ES cell line was grown on irradiated MEF feeders using standard culture conditions.  Feeders were then depleted and ES cells plated on gelatin for ~2 days.  RNA was isolated using Trizol/RNeasy, then hybridized to AffyMetrix mouse U74Av2 chip according to manufacturer's protocol.  Data were normalized by AffyMetrix MAS5.0 using defaults.
Keywords = embryonic stem cholesterol transport


title: mouse, mutant, liver, RNA B8877


title: ES cell control, RNA 298

source_name: E14 +/+ wildtype ES cell line (control for Cdk4 +/- ES cell line)


title: ES cell mutant, RNA 307


title: Time point at 12h post HCMV infection

description:
Array representing response of human foreskin fibroblasts at 12 h
post infection with HCMV


title: Time point at 4h post HCMV infection

description:
Array representing the response of Human foreskin fibroblasts at 4h
post HCMV infection


title: ES cell mutant, RNA 306


title: Time point at 16h post HCMV infection

description:
Array representing the response of Human foreskin fibroblasts at
16h post HCMV infection


title: ES cell control, RNA 296

source_name: E14 +/+ wiltype ES cell line (control for Cdk4+/- ES cell line)


title: ES cell control, RNA 297


title: 24 h post HCMV infection

description:
Array representing response at 24 h post infection of primary human
foreskin fibroblasts with AD169 strain of HCMV

source_name: Primary human foreskin fibroblasts


title: Time point at 10h post HCMV infection

description:
Array representing response of human foreskin fibroblasts at
10h post HCMV infection


title: D6-U133A

status: Public on Sep 22 2003

city: Rochester

first: Stephen

last: Welle

address: 601 Elmwood Avenue

institute: University of Rochester

description:
RNA extracted and samples processed as described in BMC Bioinformatics 3:23 (2002)
Keywords = muscle, aging

source_name: vastus lateralis biopsy 66 yr old healthy female


title: C8-U133A

source_name: vastus lateralis biopsy 29 yr old healthy female


title: D7-U133B

source_name: vastus lateralis biopsy 67 yr old healthy female


title: D4-U133A

source_name: vastus lateralis biopsy 65 yr old healthy female


title: D5-U133B

source_name: vastus lateralis biopsy 68 yr old healthy female


title: D8-U133A


title: C7-U133A

source_name: vastus lateralis biopsy 22 yr old healthy female


title: D1-U133A

source_name: vastus lateralis biopsy 70 yr old healthy female


title: D7-U133A


title: D8-U133B


title: C6-U133B

source_name: vastus lateralis biopsy 20 yr old healthy female


title: D6-U133B


title: D4-U133B


title: D2-U133B

source_name: vastus lateralis biopsy 71 yr old healthy female


title: D3-U133A


title: D1-U133B


title: C8-U133B


title: D2-U133A


title: D3-U133B


title: D5-U133A


title: C7-U133B


title: C4-U133B

source_name: vastus lateralis biopsy 26 yr old healthy female


title: C4-U133A


title: C2-U133A

source_name: vastus lateralis biopsy 24 yr old healthy female


title: C6-U133A


title: mouse liver, RNA B6999A


title: CT62-1

status: Public on Sep 20 2003

first: Radu

middle: Daniel

last: Rudic

address: 421 Curie Boulevard

department: Center of Experimental Therapeutics

description: After 2 week acclimation to 12 hr/12 hr light/dark regimen, c57/Bl6 mice were subjected to a 36 hour period of constant darkness. Aortae were subsequently harvested at 4 hour intervals to 48 hours.  Duplicate microarrays were hybridized with biotin-labeled probes derived from aorta tissue (6 pooled aortae/timepoint).

source_name: aorta


title: Dahl_kidney_5_U94A

city: Montreal

first: Alan

middle: Y

last: Deng

institute: Research Centre-CHUM

description: Kidneys of 5 week old Dahl salt sensitive rat.

source_name: kidney


title: CT18-2

description: After 2 week acclimation to 12 hr/12 hr light/dark regimen, c57/Bl6 mice were subjected to a 36 hour period of constant darkness. Aortae were subsequently harvested at 4 hour intervals to 48 hours.  Duplicate microarrays were hybridized with biotin-labeled probes derived from aorta tissue (6 pooled aortae/timepoint).  Second chip data.


title: Dahl_kidney_2_U94A


title: CT58-1


title: C3-U133B

description:
RNA extracted and samples processed as described in BMC Bioinformatics 2:23 (2002)
Keywords = muscle, aging

source_name: vastus lateralis biopsy 21 yr old healthy female


title: C1-U133A

source_name: vastus lateralis biopsy 23 yr old healthy female


title: CT34-1


title: CT54-1


title: C3-U133A


title: C2-U133B

description:
RNA extracted and samples processed as described in BMC Bioinformatics 3:23 (2002)
Keywords = muscle
Keywords = aging


title: Dahl_kidney_1_U94A


title: CT46-1


title: Dahl_kidney_1_U94C


title: CT22-1


title: CT50-1


title: CT30-1


title: Dahl_kidney_1_U94B

description: Kidneys of 5 week old Dahl salt sensitive rat


title: CT26-1


title: Dahl_kidney_4_U94B

description: Kidneys of 5 week congenic strain for Chr.10.


title: Dahl_kidney_3_U94B


title: ISR15

description:
ISR15-Fv2E-PERK AP20187 4hr1
RNA from an 2nm AP20187 treated (4hr) Fv2E-PERK expressing mouse fibroblast cell line in an eIF2 alpha SS (wildtype), PERK-/- background. AP20187 activates the kinase activity of the Fv2E-PERK chimera. The PERK-/- background was used in order to obtain a cell line that expressed high levels of the Fv2E-PERK transgene. (We were unable to obtain clones with high levels of expression in wildtype cells.) The data are part of 24 chip experiment comparing genes induced during activation of the Integrated Stress Response by tunicamycin or following AP20187 induced dimerization of a Fv2E-PERK chimera in wildtype cells and cells carrying mutations in key ISR signaling molecules.

Keywords = ATF4
Keywords = PERK
Keywords = ISR eIF2alpha


title: C1-U133B


title: CT18-1

description:
After 2 week acclimation to 12 hr/12 hr light/dark regimen, c57/Bl6 mice were subjected to a 36 hour period of constant darkness. Aortae were subsequently harvested at 4 hour intervals to 48 hours.  Duplicate microarrays were hybridized with biotin-labeled probes derived from aorta tissue (6 pooled aortae/timepoint).
Keywords = aorta, murine, circadian


title: CT42-1


title: Dahl_kidney_3_U94C


title: CT38-1


title: 24+

status: Public on Sep 17 2003

city: Columbus

first: Herbert

last: Auer

state: OH

address: 420 West 12th Ave

institute: Human Cancer Genetics

description:
NB 4 cells were treated with 5 mM valproic acid for 24 hours to induce apoptosis. Apoptosis was measured using annexin V-FITC and propidium iodide (PI) according to the manufacturer's protocol. RNA was also isolated using Trizol.  Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.
Keywords = Homo sapiens, RNA degradation, apoptosis, microarray

source_name: NB 4 cells


title: 24-2

description:
NB 4 cells were mock-treated for 24 hours. Apoptosis was measured using annexin V-FITC and propidium iodide (PI) according to the manufacturer's protocol. RNA was also isolated using Trizol.  Targets were produced using standard Affymetrix procedures from about 8ug of total RNA. One of three replicates processed in parallel.
Keywords = Homo sapiens, RNA degradation, apoptosis, microarray


title: Heart failure_LVAD_3

status: Public on Sep 09 2003

city: Minneapolis

first: Yingjie

last: Chen

state: MN

department: Medicine, Cardiovascular Division

institute: University of Minnesota

description:
Sample was obtained from a 46 years old male subject with congestive heart failure after LVAD support. Good quality sample.
Keywords = Congestive heart failure,  left ventricular assist device, eNOS, gene, dimethylarginine dimethylaminohydrolase

source_name: Left ventricular myocardium


title: 24-1


title: 8+

description:
NB 4 cells were treated with 5 mM valproic acid for 8 hours to induce apoptosis. Apoptosis was measured using annexin V-FITC and propidium iodide (PI) according to the manufacturer's protocol. RNA was also isolated using Trizol.  Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.
Keywords = Homo sapiens, RNA degradation, apoptosis, microarray


title: Heart failure_LVAD_5

description:
Sample was obtained from a 64 years old male subject with congestive heart failure after LVAD support. Good quality sample.
Keywords = Congestive heart failure,  left ventricular assist device, eNOS, gene, dimethylarginine dimethylaminohydrolase


title: db/db 16 wk 3

city: Cleveland

first: Michael

middle: S

last: Simonson

address: 2109 Adelbert Rd

department: Medicine- Nephrology

institute: Case Western Reserve University

description:
RNA of Kidney was extracted using a Quiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.  3  biological replicates were analyzed.
Keywords = db/m mice
Keywords = kidney

source_name: Kidney


title: m1-adenoma3

status: Public on Sep 12 2003

city: Notre Dame

first: Matthew

last: Feldman

state: IN

address: 251 Nieuwland Science Hall

department: Chemistry and Biochemistry

institute: University of Notre Dame

description: Cells captured via Arcturus LCM system, amplified (RiboAmp, 2 rounds) and labeled (Enzo) for hybridizaton to Affymetrix MG_U74Av2 arrays, using manufacturers protocols in each step.

source_name: Ileum epithelials cells


title: db/db 16 wk 1

description:
RNA of Kidney was extracted using a Quiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.  3  biological replicates were analyzed.

Keywords = db/m mice
Keywords = kidney


title: db/db 16 wk 2


title: m1-WT1


title: 32+

description:
NB 4 cells were treated with 5 mM valproic acid for 32 hours to induce apoptosis. Apoptosis was measured using annexin V-FITC and propidium iodide (PI) according to the manufacturer's protocol. RNA was also isolated using Trizol. Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.
Keywords = Homo sapiens, RNA degradation, apoptosis, microarray


title: Heart failure sample 7

description:
Sample was obtained from a 64 years old male subject with congestive heart failure after LVAD support. Good quality sample.
Keywords = Congestive heart failure,  eNOS, gene, dimethylarginine dimethylaminohydrolase


title: db/m 16 wk 3


title: m1-carcinoma5


title: Heart failure sample 5

description:
Sample was obtained from a 64 years old male subject with congestive heart failure. Good quality sample.
Keywords = Congestive heart failure,  eNOS, gene, dimethylarginine dimethylaminohydrolase


title: db/db 8wk 2


title: Heart failure sample 3

description:
Sample was obtained from a 46 years old male subject with congestive heart failure. Good quality sample.
Keywords = Congestive heart failure,  eNOS, gene, dimethylarginine dimethylaminohydrolase


title: 24-3


title: db/db 8 wk 1


title: Heart failure sample 6

description:
Sample was obtained from a 46 years old male subject with congestive heart failure. Good quality sample.
Keywords = Congestive heart failure, eNOS, gene, dimethylarginine dimethylaminohydrolase


title: db/db 8wk 3


title: Heart failure_LVAD_7

description:
Sample was obtained from a 64 years old male subject with congestive heart failure. Good quality sample.
Keywords = Congestive heart failure,  left ventricular assist device, eNOS, gene, dimethylarginine dimethylaminohydrolase


title: db/m 16 wk1


title: Heart failure_LVAD_4

description:
Sample was obtained from a 45 years old male subject with congestive heart failure after left ventricular assist device support. Good quality sample.
Keywords = Congestive heart failure, left ventricular assist device


title: Heart failure_LVAD_1

description:
This sample was obtained from a 42 years old female with congestive heart failure at 89 days after left ventricular assist device support. High quality sample.
Keywords = Congestive heart failure,  left ventricular assist device, eNOS, gene, dimethylarginine dimethylaminohydrolase


title: db/m 8wk 2


title: db/m 8wk 1


title: Heart failure_LVAD_2

description: This sample was obtained from a 37 years old female heart failure subject after left ventricular assist device support.


title: Heart failure_LVAD_6


title: db/m 8wk 3


title: Heart failure sample 4

description: Sample was obtained from a 45 years old male subject with congestive heart failure. Good quality sample.


title: Control and Congestive Heart Failure, Sample 1

status: Public on Sep 08 2003

city: Tucson

first: Niranjan

last: Maitra

state: AZ

address: 1501 North Campbell Avenue

department: Sarver Heart Center

institute: University of Arizona

description:
Comparison of gene expression in normal and congestive heart failure heart
Hemodynamic Data:
Control Heart: HR 272, LVSP 129, LVEDP 5, LVdp/dt 6133/-5427
Heart Failure: HR 227, LVSP 84, LVEDP 17, LVdp/dt 3399/-1773

source_name: Control Heart, Group 1

source_name: Heart Failure, Group 1


title: Control and Congestive Heart Failure, Sample 4

description:
Comparison of gene expression in normal and congestive heart failure heart
Hemodynamic Data:
Control Heart: HR 221, LVSP 136, LVEDP 5, LVdp/dt 7783/-6880
Heart Failure: HR 268, LVSP 96, LVEDP 22, LVdp/dt 4335/-2887

source_name: Heart Failure, Group 2

source_name: Control Heart, Group 2


title: db/m 16 wk 2


title: Heart failure sample 1

description:
Myocardium sample was obtained from a 42 years old female congestive heart failure subject. High quality sample.
Keywords = Congestive heart failure,  eNOS, gene, dimethylarginine dimethylaminohydrolase


title: 8M_B31103

status: Public on Sep 05 2003

city: Boston

first: Catherine

last: Klapperich

address: 44 Cummington St. 7th Floor

department: Biomedical and Manufacturing Engineering

institute: Boston University

description:
mRNA was isolated after 8 hours of incubation from IMR-90 cells seeded onto a collagen/chondroitin sulfate tissue engineering scaffold mesh material. Cells were seeded at a density of 1 x 10^6 cells/ mesh, and this chip represents a pooling of cells from 4 meshes.
Keywords = tissue engineering mesh, collagen, chondroitin sulfate, biomaterials design

source_name: IMR-90 Human Fetal Lung Fibroblasts


title: 8M_122002


title: 8P_B22013

description:
mRNA was isolated after incubation for 8 hours on a TCPS dish.
Keywords = tissue culture plates


title: 4M_B31103

description:
mRNA was isolated after 4 hours of incubation from IMR-90 cells seeded onto a collagen/chondroitin sulfate tissue engineering scaffold mesh material. Cells were seeded at a density of 1 x 10^6 cells/ mesh, and this chip represents a pooling of cells from 4 meshes.
Keywords = tissue engineering mesh, collagen, chondroitin sulfate, biomaterials design


title: Heart failure sample 2

description:
This sample was obtained from a 37 years old female heart failure subjects. Good quality sample.
Keywords = Congestive heart failure,  eNOS, gene, dimethylarginine dimethylaminohydrolase


title: Control and Congestive Heart Failure, Sample 3


title: Control and Congestive Heart Failure, Sample 6

description:
Comparison of gene expression in normal and congestive heart failure heart
Hemodynamic Data:
Control Heart: HR 286, LVSP 122, LVEDP 3, LVdp/dt 6082/-5120
Heart Failure: HR 248, LVSP 93, LVEDP 22, LVdp/dt 4035/-2909

source_name: Heart Failure, Group 3

source_name: Control Heart, Group 3


title: Control and Congestive Heart Failure, Sample 5

description:
Comparison of gene expression in normal and congestive heart failure heart
Hemodynamic Data:
Control Heart : HR 286, LVSP 122, LVEDP 3, LVdp/dt 6082/-5120
Heart Failure: HR 248, LVSP 93, LVEDP 22, LVdp/dt 4035/-2909


title: 8P_A22013


title: 48M_A22103

description:
mRNA was isolated after 48 hours of incubation from IMR-90 cells seeded onto a collagen/chondroitin sulfate tissue engineering scaffold mesh material. Cells were seeded at a density of 1 x 10^6 cells/ mesh, and this chip represents a pooling of cells from 4 meshes.
Keywords = tissue engineering mesh, collagen, chondroitin sulfate, biomaterials design


title: 48M_122002


title: 2P_122002

description:
mRNA was isolated after 2 hours of incubation from IMR-90 cells seeded onto a Tissue Culture Polystyrene Dish.
Keywords = tissue culture plates


title: 2M_A31103

description:
mRNA was isolated after 2 hours of incubation from IMR-90 cells seeded onto a collagen/chondroitin sulfate tissue engineering scaffold mesh material. Cells were seeded at a density of 1 x 10^6 cells/ mesh, and this chip represents a pooling of cells from 4 meshes.
Keywords = tissue engineering mesh, collagen, chondroitin sulfate, biomaterials design


title: 8M_120502

description: mRNA was isolated after 8 hours of incubation from IMR-90 cells seeded onto a collagen/chondroitin sulfate tissue engineering scaffold mesh material. Cells were seeded at a density of 1 x 10^6 cells/ mesh, and this chip represents a pooling of cells from 4 meshes.


title: 1M_B31103

description:
mRNA was isolated after 1 hour of incubation from IMR-90 cells seeded onto a collagen/chondroitin sulfate tissue engineering scaffold mesh material. Cells were seeded at a density of 1 x 10^6 cells/ mesh, and this chip represents a pooling of cells from 4 meshes.
Keywords = tissue engineering mesh, collagen, chondroitin sulfate, biomaterials design


title: 8M_A31103


title: 4P_B21903

description:
mRNA was isolated after 4 hours of incubation on a TCPS dish.
Keywords = tissue culture plates


title: 1P_122002

description: mRNA was isolated after 1 hour of incubation from IMR-90 cells seeded onto a Tissue Culture Polystyrene Dish.


title: 48P_92802

description:
mRNA was isolated after 48 hours of incubation from IMR-90 cells seeded onto a Tissue Culture Polystyrene Dish.
Keywords = tissue culture plates


title: Control and Congestive Heart Failure, Sample 2

description:
Comparison of gene expression in normal and congestive heart failure heart
Hemodynamic Data:
Control Heart: HR 272, LVSP 129, LVEDP 5, LVdp/dt 6133/-5427
Heart Failure: HR 227, LVSP 84, LVEDP 17, LVdp/dt 3399/-1773


title: 24P_B22103

description:
mRNA was isolated after 24 hours of incubation from IMR-90 cells seeded onto aTissue Culture Polystyrene dish.
Keywords = tissue culture plates


title: 4P_122002

description:
mRNA was isolated after 4 hours of incubation from IMR-90 cells seeded onto a Tissue Culture Polystyrene Dish.
Keywords = tissue culture plates


title: 12P_122002

description: mRNA was isolated after 12 hours of incubation from IMR-90 cells seeded onto a Tissue Culture Polystyrene.


title: 12P_B31103

description: mRNA was isolated after 30 minutes of incubation from IMR-90 cells seeded onto a Tissue Culture Polystyrene dish.


title: 2P_B22103


title: 4M_122002

description:
mRNA was isolated after 4 hours of incubation from IMR-90 cells seeded onto a collagen/chondroitin sulfate tissue engineering scaffold mesh material. Cells were seeded at a density of 1 x 10^6 cells/ mesh, and this chip represents a pooling of cells from 4 meshes.
Keywords = tissue engineering mesh, collagen, chondroitin sulfate, biomaterials design


title: 12M_122002

description:
mRNA was isolated after 12 hours of incubation from IMR-90 cells seeded onto a collagen/chondroitin sulfate tissue engineering scaffold mesh material. Cells were seeded at a density of 1 x 10^6 cells/ mesh, and this chip represents a pooling of cells from 4 meshes.
Keywords = tissue engineering mesh, collagen, chondroitin sulfate, biomaterials design


title: 2M_120502

description: mRNA was isolated after 2 hours of incubation from IMR-90 cells seeded onto a collagen/chondroitin sulfate tissue engineering scaffold mesh material. Cells were seeded at a density of 1 x 10^6 cells/ mesh, and this chip represents a pooling of cells from 4 meshes.


title: 4M_A31103


title: 24M_A31103

description:
mRNA was isolated after 24 hours of incubation from IMR-90 cells seeded onto a collagen/chondroitin sulfate tissue engineering scaffold mesh material. Cells were seeded at a density of 1 x 10^6 cells/ mesh, and this chip represents a pooling of cells from 4 meshes.
Keywords = tissue engineering mesh, collagen, chondroitin sulfate, biomaterials design


title: 24M_B22103


title: 18-1-dCy3

status: Public on Sep 03 2003

city: Seattle

first: Gael

last: Yvert

state: WA

institute: Fred Hutchinson Cancer Research Center

description:
RNA from a haploid F1 segregant from a cross between the
lab strain BY4716 (isogenic to S288c) and haploid derivative RM11-1a from a wild isolate
strain from a California vineyard collected by R.
Mortimer.  The reference sample is RNA from haploid
BY4716.  See Yvert et al. Nature Genetics 2003.
NOTE: REFERENCE SAMPLE IS DIFFERENT FROM THE ONE USED
IN Brem et al. Science 2002 296:752-755. It corresponds
to the same strain but comes from an independent culture.
Lot batch =

organism: Saccharomyces cerevisiae

source_name: reference pool of BY4716 strain

source_name: segregant from BY4716 x wild wine strain RM11-1a


title: 17-4-aCy5


title: 1M_A31103


title: 18-6-dCy3


title: 18-6-dCy5


title: 1M_120502

description:
mRNA was isolated after 1 hour of incubation from IMR-90 cells seeded onto a collagen/chondroitin sulfate tissue engineering scaffold mesh material.  Cells were seeded at a density of 1 x 10^6 cells/ mesh, and this chip represents a pooling of cells from 4 meshes.
Keywords = tissue engineering mesh, collagen, chondroitin sulfate, biomaterials design


title: 18-3-dCy3


title: 18-1-dCy5


title: 12M_A31103


title: 17-4-aCy3


title: 12P_A22103

description: mRNA was isolated after 12 hours of incubation from IMR-90 cells seeded a Tissue Culture Polystyrene Dish.


title: 18-4-cCy5


title: 17-2-dCy5


title: 17-5-bCy5


title: 8-

description:
NB 4 cells were mock-treated for 8 hours. Apoptosis was measured using annexin V-FITC and propidium iodide (PI) according to the manufacturer's protocol. RNA was also isolated using Trizol.  Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.
Keywords = Homo sapiens, RNA degradation, apoptosis, microarray


title: 18-4-cCy3


title: 12M_120502

description: mRNA was isolated after 12 hours of incubation from IMR-90 cells seeded onto a collagen/chondroitin sulfate tissue engineering scaffold mesh material. Cells were seeded at a density of 1 x 10^6 cells/ mesh, and this chip represents a pooling of cells from 4 meshes.


title: 18-3-dCy5


title: 18-2-dCy5


title: 15-6-cCy5


title: 17-2-dCy3


title: 18-2-dCy3


title: 17-1-aCy5


title: 17-1-aCy3


title: 17-5-bCy3


title: 15-6-cCy3


title: 16-1-dCy5


title: 16-1-dCy3


title: 15-5-bCy3


title: 15-3-bCy3


title: 14-7-cCy5


title: 15-5-bCy5


title: 15-2-dCy3


title: 15-4-dCy3


title: 15-2-dCy5


title: 14-7-cCy3


title: 14-6-dCy5


title: 14-4-aCy5


title: 15-3-bCy5


title: 14-5-bCy5


title: 14-4-aCy3


title: 14-5-bCy3


title: 15-4-dCy5


title: 14-6-dCy3


title: 14-1-bCy5


title: 14-3-dCy5


title: 14-1-bCy3


title: 13-5-cCy5


title: 14-2-cCy3


title: 13-5-cCy3


title: 14-2-cCy5


title: 14-3-dCy3


title: 13-4-aCy5


title: 13-3-bCy5


title: 13-4-aCy3


title: 13-3-bCy3


title: 12-2-bCy3


title: 13-1-aCy3


title: 13-1-aCy5


title: 13-2-cCy3


title: 12-2-bCy5


title: 13-2-cCy5


title: 12-1-dCy5


title: 11-2-dCy5


title: 11-2-dCy3


title: 10-4-dCy3


title: 11-3-bCy3


title: 12-1-dCy3


title: 11-1-aCy5


title: 11-3-bCy5


title: 10-3-cCy5


title: 11-1-aCy3


title: 10-2-dCy5


title: 9-7-dCy5


title: 9-5-dCy3


title: 9-6-dCy5


title: 9-7-dCy3


title: 10-3-cCy3


title: 10-2-dCy3


title: 9-3-dCy5


title: 10-1-cCy3


title: 10-1-cCy5


title: 9-6-dCy3


title: 9-4-dCy3


title: 10-4-dCy5


title: 9-3-dCy3


title: 9-5-dCy5


title: 9-2-dCy5


title: 9-4-dCy5


title: 9-1-dCy5


title: 8-6-cCy5


title: 8-6-cCy3


title: 9-1-dCy3


title: 8-7-bCy3


title: 8-5-bCy5


title: 8-7-bCy5


title: 8-3-aCy5


title: 8-5-bCy3


title: 8-4-cCy3


title: 8-4-cCy5


title: 8-3-aCy3


title: 8-2-dCy5


title: 7-8-dCy3


title: 7-7-cCy5


title: 7-6-cCy3


title: 8-1-aCy3


title: 8-1-aCy5


title: 7-7-cCy3


title: 7-5-dCy3


title: 7-5-dCy5


title: 7-8-dCy5


title: 8-2-dCy3


title: 7-6-cCy5


title: 7-2-cCy5


title: 7-4-cCy3


title: 7-3-dCy5


title: 7-3-dCy3


title: 7-4-cCy5


title: 6-6-dCy3


title: 6-5-dCy5


title: 6-4-dCy3


title: 6-6-dCy5


title: 6-5-dCy3


title: 7-1-dCy5


title: 7-2-cCy3


title: 6-7-dCy3


title: 7-1-dCy3


title: 6-4-dCy5


title: 6-7-dCy5


title: 6-3-cCy5


title: 5-5-dCy5


title: 6-1-dCy5


title: 6-3-cCy3


title: 4P_A22103

description: mRNA was isolated after 4 hours of incubation from IMR-90 cells seeded onto a TCPS Dish.


title: 5-3-dCy5


title: 5-5-dCy3


title: 5-4-dCy3


title: 5-2-dCy3


title: 6-1-dCy3


title: 5-4-dCy5


title: 5-1-dCy5


title: 4-4-dCy5


title: 5-1-dCy3


title: 6-2-bCy5


title: 6-2-bCy3


title: 5-3-dCy3


title: 4-3-dCy5


title: 4-3-dCy3


title: 4-1-cCy5


title: 4-4-dCy3


title: 4-1-cCy3


title: 3-5-dCy3


title: 3-3-dCy5


title: 2-5-dCy5


title: 3-1-dCy3


title: 3-4-dCy3


title: 2-5-dCy3


title: 3-1-dCy5


title: 2-6-dCy3


title: 2-6-dCy5


title: 3-5-dCy5


title: 3-3-dCy3


title: 3-4-dCy5


title: 2-4-aCy5


title: 1-1-dCy3


title: 2-3-dCy5


title: 1-1-dCy5


title: 1-4-dCy3


title: 2-2-dCy5


title: 2-4-aCy3


title: 2-3-dCy3


title: 1-5-cCy5


title: 1-3-dCy5


title: 2-2-dCy3


title: 1-4-dCy5


title: 1-5-cCy3


title: 5-2-dCy5


title: 1-3-dCy3


title: RM2Cy5

description:
RNA from the lab strain BY4716 (S288c general background).
and a haploid derivative of wild isolate strain (RM11) from a California vineyard
collected by R. Mortimer.  See Yvert et al. Nature Genetics 2003.
NOTE: REFERENCE SAMPLE IS DIFFERENT FROM THE ONE USED
IN Brem et al. Science 2002 296:752-755. It corresponds
to the same strain but comes from an independent culture.
Lot batch =

source_name: independent culture of wild strain RM11


title: RM1Cy5


title: Control Sprague Dawley

status: Public on Sep 02 2003

city: Louisville

first: Kenneth

middle: S.

last: Ramos

state: KY

department: Biochemistry and Molecular Biology

institute: University of Louisville School of Medicine

description: rats dosed with water 1ml/kg for 20 days

source_name: thoracic aorta


title: 35 allylamineSprague Dawley rat

description: rats dosed with 35mg/kg allylamine for 20 days


title: RM2Cy3


title: RM1Cy3


title: By1Cy5

description:
RNA from the lab strain BY4716 (S288c general background).
See Yvert et al. Nature Genetics 2003.
NOTE: REFERENCE SAMPLE IS DIFFERENT FROM THE ONE USED
IN Brem et al. Science 2002 296:752-755. It corresponds
to the same strain but comes from an independent culture.
Lot batch =

source_name: independent culture of BY4716


title: By1Cy3


title: Cervical Cancer C555

status: Public on Sep 01 2003

city: Piscataway

first: Khew-Voon

last: Chin

address: 164 Frelinghuysen Road

department: Chemical Biology

institute: Ernest Mario School of Pharmacy, Rutgers University

description:
sex=female
ID = C555
Stage 1B (NED)
Total RNA
Keywords = cervical cancer
Keywords = cervix

source_name: Cervical cancer tissue


title: By2Cy3


title: Cervical Cancer C579

description:
sex=female
ID = C579
Stage 1B
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: By2Cy5


title: 70 allylamine Sprague Dawley

description: rats dosed with 70mg/kg allylamine for 20 days


title: Normal Cervix N6

description:
sex=female
ID = N6
Total RNA
Keywords = cervical cancer
Keywords = cervix

source_name: Normal Cervix


title: Cervical Cancer C564

description:
sex=female
ID = C564
Stage 1B
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Cervical Cancer C567

description:
sex=female
ID = C567
Stage 2B (DOD)
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Normal Cervix N5

description:
sex=female
ID = N5
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Cervical Cancer C542

description:
sex=female
ID = C542
Stage 1B
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Normal Cervix N9

description:
sex=female
ID = N9
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Normal Cervix N17

description:
sex=female
ID = N17
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Normal Cervix N14

description:
sex=female
ID = N14
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Normal Cervix N8

description:
sex=female
ID = N8
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Normal Cervix N10

description:
sex=female
ID = N10
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Cervical Cancer C540

description:
sex=female
ID = C540
Stage 1B
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Normal Cervix N13

description:
sex=female
ID = N13
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Cervical Cancer C524

description:
sex=female
ID = C524
Stage 1B
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Cervical Cancer C525

description:
sex=female
ID = C525
Stage 1B
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Cervical Cancer C517

description:
sex=female
ID = C517
Stage 1B
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Cervical Cancer C538

description:
sex=female
ID = C538
Stage 2A
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Cervical Cancer C512

description:
sex=female
ID = C512
Stage 2A
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Cervical Cancer C495

description:
sex=female
ID = C495
Stage 2A (DOD)
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: 9-2-dCy3

description:
RNA from a haploid F1 segregant from a cross between the
lab strain BY4716 (isogenic to S288c) and haploid derivative RM11-1a from a wild isolate
strain from a California vineyard collected by R.
Mortimer.  The reference sample is RNA from haploid
BY4716.  See Yvert et al. Nature Genetics 2003.
NOTE: REFERENCE SAMPLE IS DIFFERENT FROM THE ONE USED
IN Brem et al. Science 2002 296:752-755. It corresponds
to the same strain but comes from an independent culture.
Lot batch =


title: Cervical Cancer C496

description:
sex=female
ID = C496
Stage 3B (DOD)
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Cervical Cancer C502

description:
sex=female
ID = C502
Stage 1B (DOD)
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Cervical Cancer C484

description:
sex=female
ID = C484
Stage 2A
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Cervical Cancer C451

description:
sex=female
ID = C451
Stage 2B (NED)
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Cervical Cancer C477

description:
sex=female
ID = C477
Stage 2A (NED)
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Phopshate starvation

status: Public on Aug 29 2003

city: San Francisco

first: Dennis

last: Wykoff

department: Biochemistry

institute: UCSF

description: Cells were split and placed in the same media with/without 10 mM phosphate and grown for 2 hours.  This a is representative array.

source_name: Cells starved for Pi for 2 hours

source_name: Wild-type cells


title: Phopshate starvation 2

description: See other description

source_name: Starved of Phosphate for 2 hours


title: Cervical Cancer C348

description:
sex=female
ID = C348
Stage 2A (DOD)
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Cervical Cancer C437

description:
sex=female
ID = C437
Stage 2A (NED)
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Intermediate phosphate 2

description: ANother representative array.  See other in series.

source_name: Intermediate phosphate grown cells

source_name: WIld-type high phosphate grown cells


title: Cervical Cancer C290

description:
sex=female
ID = C290
Stage 2A
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Pho4-SA1234PA6

description: A representative sample of Pho4 mutant cells compared to wild-type.

source_name: WT cells


title: Cervical Cancer C482

description:
sex=female
ID = C482
Stage 1B
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Pho4-SA1234WT6

description: Comparison of Pho4-SA1234WT6 cells to wild-type cells


title: Cervical Cancer C494

description:
sex=female
ID = C494
Stage 1B
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: YH4

status: Public on Aug 28 2003

first: Richard

last: Pratt

address: 75 Francis Street

department: Medicine

institute: Brigham and Women's Hospital

description:
Fischer-344 rat 4 month ventricle
Keywords = aging, heart

source_name: young heart


title: Cervical Cancer C366

description:
sex=female
ID = C366
Stage 2B (NED)
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: Intermediate phosphate

description: Cells were split and grown in 10 mM Pi or 100 micromolar Pi for 2 hours.  This is a representative array.

source_name: Cells grown in 100 micromolar Pi for 2 hours


title: YH5

description:
Fischer-344 rat 4 month ventricle

Keywords = aging, heart


title: Cervical Cancer C405

description:
sex=female
ID = C405
Stage 2B
Total RNA
Keywords = cervical cancer
Keywords = cervix


title: YH2

description:
Fischer-344 rat 4 months ventricle
Keywords = aging, heart


title: Standard S-phase Sup2

status: Public on Aug 27 2003

type: genomic

city: Bunkyo-ku

first: Katsuhiko

last: Shirahige

address: 1-1-1 Yayoi

department: Research Center for Epigenetic Disease

institute: The University of Tokyo

description: Standard S-phase sup2. Sup1 and Sup2 can be alternatively used for normalization.

molecule: genomic DNA

source_name: S-phase supernatant


title: YH1

description:
Fischer-344 rats 4 months ventricle
Keywords = aging, heart


title: OH6

description:
Fischer-344 rat 22 months ventricle
Keywords = aging, heart

source_name: Old Heart


title: YH3


title: OH5

description:
Fischer-344 rats 22 months ventricle
Keywords = aging, heart


title: Standard S-phase Sup1

description: Standard S-phase sup. Sup1 and Sup2 can be alternatively used for normalization.


title: MRC1 binding profile in tof1 deletion mutant in HU

description: MRC1 binding profile in tof1 deletion mutant on chr.VI after 60min. treatment in HU

source_name: Chromatin-IP fraction by MRC1 from tof1 deletion mutant strain treated by HU for 60 min


title: RAD9 binding profile in mrc1 deletion mutant in HU

description: RAD9 binding profile in mrc1 deletion mutant on chr.VI  after 60min. treatment in HU

source_name: Chromatin-IP fraction by RAD9 from mrc1 deletion mutant strain treated by HU for 60 min


title: TOF1 binding profile in mrc1 deletion mutant in HU

description: TOF1 binding profile in mrc1 deletion mutant on chr.VI after 60min. treatment in HU

source_name: Chromatin-IP fraction by TOF1 from mrc1 deletion mutant strain treated by HU for 60 min


title: POL1 binding profile in mrc1 deletion mutant in HU

description: POL1 binding profile in mrc1 deletion mutant on chr.VI  after 60min. treatment in HU

source_name: Chromatin-IP fraction by POL1 from mrc1 deletion mutant strain treated by HU for 60 min


title: POL3 binding profile in WT in HU

description: POL3 binding profile in WT on chr.VI  after 60min. treatment in HU

source_name: Chromatin-IP fraction by POL3 from wild type strain treated by HU for 60 min


title: OH4

description:
Fischer-344 rats 22 month ventricle
Keywords = aging, heart


title: OH2


title: Standard Sup for Random culture

description: Standard Sup file for Random Cultured Cells


title: OH3

description:
Fischer-344 rat 22 month Ventricle
Keywords = aging, heart


title: POL3 binding profile in mrc1 deletion mutant in HU

description: POL3 binding profile in mrc1 deletion mutant on chr.VI  after 60min. treatment in HU

source_name: Chromatin-IP fraction by POL3 from mrc1 deletion mutant treated by HU for 60 min


title: RFA1 binding profile in mrc1 deletion mutant in HU

description: RFA1 binding profile in mrc1 deletion mutant on chr.VI  after 60min. treatment in HU

source_name: Chromatin-IP fraction by RFA1 from mrc1 deletion mutant strain treated by HU for 60 min


title: DPB3 binding profile in mrc1 deletion mutant in HU

description: DPB3 binding profile in mrc1 deletion mutant on chr.VI  after 60min. treatment in HU

source_name: Chromatin-IP fraction by Dpb3 from mrc1 deletion mutant strain treated by HU for 60 min


title: CDC54 binding profile in WT in HU

description: CDC54 binding profile in WT on chr.VI  after 60min. treatment in HU

source_name: Chromatin-IP fraction by Cdc54 from wild type strain treated by HU for 60 min


title: CDC45 binding profile in WT after 50min in HU

description: CDC45 binding profile in WT on chr.VI  after 50min. treatment in HU

source_name: Chromatin-IP fraction by Cdc45 from wild type strain treated by HU for 50 min


title: CDC47 binding profile in mrc1 deletion mutant in HU

description: CDC47 binding profile in mrc1 deletion mutant on chr.VI after 60min. treatment in HU

source_name: Chromatin-IP fraction by Cdc47 from mrc1 deletion mutant strain treated by HU for 60 min


title: CDC45 binding profile in WT after 40min. in HU

description: CDC45 binding profile in WT on chr.VI  after 40min. treatment in HU

source_name: Chromatin-IP fraction by Cdc45 from wild type strain treated by HU for 40 min


title: Old Heart 1

description:
Fischer-344 rat 22 Months Ventricle
Keywords = aging, heart


title: CDC45 binding profile in mrc1 deletion mutant after 50min. in HU

description: CDC45 binding profile in mrc1 deletion mutant on chr.VI  after 50min. treatment in HU

source_name: Chromatin-IP fraction by Cdc45 from mrc1 deletion mutant strain treated by HU for 50 min


title: CDC45 binding profile in mrc1 deletion mutant after 40min in HU

description: CDC45 binding profile in mrc1 deletion mutant on chr.VI after 40min. treatment in HU.

source_name: Chromatin-IP fraction by Cdc45 from mrc1 deletion mutant strain treated by HU for 40 min


title: CDC47 binding profile in WT in HU

description: CDC47 binding profile in WT on chr.VI  after 60min. treatment in HU

source_name: Chromatin-IP fraction by Cdc47 from wild type strain treated by HU for 60 min


title: CDC45 binding profile in WT after 30min. in HU

description: CDC45 binding profile in WT on chr.VI  after 30min. treatment in HU.

source_name: Chromatin-IP fraction by Cdc45 from wild type strain treated by HU for 30 min


title: Control file for BrdU experiment

description: Control G1 sup for BrdU comparative analyses