title: c18 colonII

description:
Male patient, 66 years old, T3N0M0 stage, tumor size below 5 cm of diameter, located in colon-sigma. Followed five years, without recurrence.
High quality total RNA was isolated from the frozen tissues disrupted using an Ultra Turrax T25 homogenizer. Extraction of total RNA was performed with Trizol total RNA isolation reagent (Gibco BRL, Life Technologies, Gaitherburg, MD, USA) according to the manufacturer´s instructions. All the RNAs used in this study were cleaned up with RNeasy Mini Kit (Quiagen, Valencia, CA) and were exhaustively treated with RNase-free DNAse I (Quiagen) to remove residual DNA. The concentration was quantified using RiboGreen Quantification kit (Molecular Probes, Leiden, The Netherlands) and RNA was adjusted to 1microg/microl. Quality control of RNA was performed by electrophoresis and ethidium bromide staining on a 2% agarose gel.
The corresponding cDNA probes were prepared using the Micromax system (NEN, Perkin Elmer, Boston, MA) according to the manufacturer´s protocol. Briefly, 2 microg of RNA were labeled with Fluorescein-12-dCTP and reversely transcribed for 1h at 42ºC. Subsequently, the labeled cDNA was purified by precipitation with 3M acetate (pH 5.2) and isopropanol in order to eliminate the unincorporated nucleotides. After two washes with 70% ethanol, the labeled cDNA was dried and resuspended in 50 microl of GlassHyb Hybridization Solution (Clontech, Palo Alto, CA). The labeled cDNA was then pre-heated to 50ºC and hybridized to Human 19K Oligo Array slides (60 mers) (Center for Applied Genomics, University of Medicine of New Jersey). These slides were previously prehybridized by incubation at 42 ºC for 45 min in a solution consisting of 25% formamide, 5x SSC, 0.1% SDS, then rinsed in water and isopropanol and dried before hybridization.
After hybridization at 48 ºC for 16 hours in a slide cassette (Telechem, Sunnyvale, CA), slides were washed sequentially in a series of solutions of increasing stringency: 0.5xSSC, 0.01% SDS (5 minutes, room temperature); 0.06xSSC, 0.01% SDS (5 minutes, room temperature) and 0.06xSSC (2 minutes, room temperature). Immediately after washing, the presence of fluorescein labeled cDNAs on the microarray was detected using a fluorescent anti-fluorescein antibody conjugate and TSA detection (Micromax) according to the manufacturer´s protocol with appropriate modifications.
The GMS 418 scanner (Genetic Microsystems, Woburn, MA), a confocal scanning instrument containing 2 laser sources and high-resolution photo multiplier tubes (10 micron resolution), was used for scanning the hybridized microarrays. After image acquisition, the scanned images were imported into ImaGene 4.1 software (BioDiscovery, Marina del Re, CA) to quantify the signal intensities. Data from spots not recognized by the ImaGene analysis software were excluded from further considerations (empty, poor and negative spots). We also removed data from spots visually identified as flawed (< 15% in all arrays). Only the spots with flag value equal to 0 were included in the analysis.

Keywords = colon cancer stage II
Keywords = non-recurrent


title: c73 colonII

status: Public on May 07 2005

type: RNA

city: Pamplona

first: Raquel

last: Malumbres

state: Navarra

address: Avenida Pio XII 55

department: Hemato-Oncology

country: Spain

institute: University of Navarra/ Clínica Universidad de Navarra

description:
Male patient, 67 years old, T2N0M0 stage, tumor size below 5 cm of diameter, located in colon-sigma. Followed five years, without recurrence.
High quality total RNA was isolated from the frozen tissues disrupted using an Ultra Turrax T25 homogenizer. Extraction of total RNA was performed with Trizol total RNA isolation reagent (Gibco BRL, Life Technologies, Gaitherburg, MD, USA) according to the manufacturer´s instructions. All the RNAs used in this study were cleaned up with RNeasy Mini Kit (Quiagen, Valencia, CA) and were exhaustively treated with RNase-free DNAse I (Quiagen) to remove residual DNA. The concentration was quantified using RiboGreen Quantification kit (Molecular Probes, Leiden, The Netherlands) and RNA was adjusted to 1microg/microl. Quality control of RNA was performed by electrophoresis and ethidium bromide staining on a 2% agarose gel.
The corresponding cDNA probes were prepared using the Micromax system (NEN, Perkin Elmer, Boston, MA) according to the manufacturer´s protocol. Briefly, 2 microg of RNA were labeled with Fluorescein-12-dCTP and reversely transcribed for 1h at 42ºC. Subsequently, the labeled cDNA was purified by precipitation with 3M acetate (pH 5.2) and isopropanol in order to eliminate the unincorporated nucleotides. After two washes with 70% ethanol, the labeled cDNA was dried and resuspended in 50 microl of GlassHyb Hybridization Solution (Clontech, Palo Alto, CA). The labeled cDNA was then pre-heated to 50ºC and hybridized to Human 19K Oligo Array slides (60 mers) (Center for Applied Genomics, University of Medicine of New Jersey). These slides were previously prehybridized by incubation at 42 ºC for 45 min in a solution consisting of 25% formamide, 5x SSC, 0.1% SDS, then rinsed in water and isopropanol and dried before hybridization.
After hybridization at 48 ºC for 16 hours in a slide cassette (Telechem, Sunnyvale, CA), slides were washed sequentially in a series of solutions of increasing stringency: 0.5xSSC, 0.01% SDS (5 minutes, room temperature); 0.06xSSC, 0.01% SDS (5 minutes, room temperature) and 0.06xSSC (2 minutes, room temperature). Immediately after washing, the presence of fluorescein labeled cDNAs on the microarray was detected using a fluorescent anti-fluorescein antibody conjugate and TSA detection (Micromax) according to the manufacturer´s protocol with appropriate modifications.
The GMS 418 scanner (Genetic Microsystems, Woburn, MA), a confocal scanning instrument containing 2 laser sources and high-resolution photo multiplier tubes (10 micron resolution), was used for scanning the hybridized microarrays. After image acquisition, the scanned images were imported into ImaGene 4.1 software (BioDiscovery, Marina del Re, CA) to quantify the signal intensities. Data from spots not recognized by the ImaGene analysis software were excluded from further considerations (empty, poor and negative spots). We also removed data from spots visually identified as flawed (< 15% in all arrays). Only the spots with flag value equal to 0 were included in the analysis.

Keywords = colon cancer stage II
Keywords = non-recurrent

molecule: total RNA

organism: Homo sapiens

source_name: Frozen primary colorectal tumor, Dukes´stage B, patient without subsequent recurrence


title: c37 colonII

description:
Female patient, 45 years old, T3N0M0 stage, tumor size over 5 cm of diameter, located in left colon. Followed five years, without recurrence.
High quality total RNA was isolated from the frozen tissues disrupted using an Ultra Turrax T25 homogenizer. Extraction of total RNA was performed with Trizol total RNA isolation reagent (Gibco BRL, Life Technologies, Gaitherburg, MD, USA) according to the manufacturer´s instructions. All the RNAs used in this study were cleaned up with RNeasy Mini Kit (Quiagen, Valencia, CA) and were exhaustively treated with RNase-free DNAse I (Quiagen) to remove residual DNA. The concentration was quantified using RiboGreen Quantification kit (Molecular Probes, Leiden, The Netherlands) and RNA was adjusted to 1microg/microl. Quality control of RNA was performed by electrophoresis and ethidium bromide staining on a 2% agarose gel.
The corresponding cDNA probes were prepared using the Micromax system (NEN, Perkin Elmer, Boston, MA) according to the manufacturer´s protocol. Briefly, 2 microg of RNA were labeled with Fluorescein-12-dCTP and reversely transcribed for 1h at 42ºC. Subsequently, the labeled cDNA was purified by precipitation with 3M acetate (pH 5.2) and isopropanol in order to eliminate the unincorporated nucleotides. After two washes with 70% ethanol, the labeled cDNA was dried and resuspended in 50 microl of GlassHyb Hybridization Solution (Clontech, Palo Alto, CA). The labeled cDNA was then pre-heated to 50ºC and hybridized to Human 19K Oligo Array slides (60 mers) (Center for Applied Genomics, University of Medicine of New Jersey). These slides were previously prehybridized by incubation at 42 ºC for 45 min in a solution consisting of 25% formamide, 5x SSC, 0.1% SDS, then rinsed in water and isopropanol and dried before hybridization.
After hybridization at 48 ºC for 16 hours in a slide cassette (Telechem, Sunnyvale, CA), slides were washed sequentially in a series of solutions of increasing stringency: 0.5xSSC, 0.01% SDS (5 minutes, room temperature); 0.06xSSC, 0.01% SDS (5 minutes, room temperature) and 0.06xSSC (2 minutes, room temperature). Immediately after washing, the presence of fluorescein labeled cDNAs on the microarray was detected using a fluorescent anti-fluorescein antibody conjugate and TSA detection (Micromax) according to the manufacturer´s protocol with appropriate modifications.
The GMS 418 scanner (Genetic Microsystems, Woburn, MA), a confocal scanning instrument containing 2 laser sources and high-resolution photo multiplier tubes (10 micron resolution), was used for scanning the hybridized microarrays. After image acquisition, the scanned images were imported into ImaGene 4.1 software (BioDiscovery, Marina del Re, CA) to quantify the signal intensities. Data from spots not recognized by the ImaGene analysis software were excluded from further considerations (empty, poor and negative spots). We also removed data from spots visually identified as flawed (< 15% in all arrays). Only the spots with flag value equal to 0 were included in the analysis.

Keywords = colon cancer stage II
Keywords = non-recurrent


title: c79 colonII

description:
Male patient, 72 years old, T3N0M0 stage, tumor size below 5 cm of diameter, located in colon-sigma. Followed five years, with recurrence.
High quality total RNA was isolated from the frozen tissues disrupted using an Ultra Turrax T25 homogenizer. Extraction of total RNA was performed with Trizol total RNA isolation reagent (Gibco BRL, Life Technologies, Gaitherburg, MD, USA) according to the manufacturer´s instructions. All the RNAs used in this study were cleaned up with RNeasy Mini Kit (Quiagen, Valencia, CA) and were exhaustively treated with RNase-free DNAse I (Quiagen) to remove residual DNA. The concentration was quantified using RiboGreen Quantification kit (Molecular Probes, Leiden, The Netherlands) and RNA was adjusted to 1microg/microl. Quality control of RNA was performed by electrophoresis and ethidium bromide staining on a 2% agarose gel.
The corresponding cDNA probes were prepared using the Micromax system (NEN, Perkin Elmer, Boston, MA) according to the manufacturer´s protocol. Briefly, 2 microg of RNA were labeled with Fluorescein-12-dCTP and reversely transcribed for 1h at 42ºC. Subsequently, the labeled cDNA was purified by precipitation with 3M acetate (pH 5.2) and isopropanol in order to eliminate the unincorporated nucleotides. After two washes with 70% ethanol, the labeled cDNA was dried and resuspended in 50 microl of GlassHyb Hybridization Solution (Clontech, Palo Alto, CA). The labeled cDNA was then pre-heated to 50ºC and hybridized to Human 19K Oligo Array slides (60 mers) (Center for Applied Genomics, University of Medicine of New Jersey). These slides were previously prehybridized by incubation at 42 ºC for 45 min in a solution consisting of 25% formamide, 5x SSC, 0.1% SDS, then rinsed in water and isopropanol and dried before hybridization.
After hybridization at 48 ºC for 16 hours in a slide cassette (Telechem, Sunnyvale, CA), slides were washed sequentially in a series of solutions of increasing stringency: 0.5xSSC, 0.01% SDS (5 minutes, room temperature); 0.06xSSC, 0.01% SDS (5 minutes, room temperature) and 0.06xSSC (2 minutes, room temperature). Immediately after washing, the presence of fluorescein labeled cDNAs on the microarray was detected using a fluorescent anti-fluorescein antibody conjugate and TSA detection (Micromax) according to the manufacturer´s protocol with appropriate modifications.
The GMS 418 scanner (Genetic Microsystems, Woburn, MA), a confocal scanning instrument containing 2 laser sources and high-resolution photo multiplier tubes (10 micron resolution), was used for scanning the hybridized microarrays. After image acquisition, the scanned images were imported into ImaGene 4.1 software (BioDiscovery, Marina del Re, CA) to quantify the signal intensities. Data from spots not recognized by the ImaGene analysis software were excluded from further considerations (empty, poor and negative spots). We also removed data from spots visually identified as flawed (< 15% in all arrays). Only the spots with flag value equal to 0 were included in the analysis.

Keywords = colon cancer stage II
Keywords = recurrent

source_name: Frozen primary colorectal tumor, Dukes´stage B, patient with subsequent recurrence


title: c16 colonII

description:
Male patient, 42 years old, T3N0M0 stage, tumor size below 5 cm of diameter, located in colon-sigma. Followed five years, with recurrence.
High quality total RNA was isolated from the frozen tissues disrupted using an Ultra Turrax T25 homogenizer. Extraction of total RNA was performed with Trizol total RNA isolation reagent (Gibco BRL, Life Technologies, Gaitherburg, MD, USA) according to the manufacturer´s instructions. All the RNAs used in this study were cleaned up with RNeasy Mini Kit (Quiagen, Valencia, CA) and were exhaustively treated with RNase-free DNAse I (Quiagen) to remove residual DNA. The concentration was quantified using RiboGreen Quantification kit (Molecular Probes, Leiden, The Netherlands) and RNA was adjusted to 1microg/microl. Quality control of RNA was performed by electrophoresis and ethidium bromide staining on a 2% agarose gel.
The corresponding cDNA probes were prepared using the Micromax system (NEN, Perkin Elmer, Boston, MA) according to the manufacturer´s protocol. Briefly, 2 microg of RNA were labeled with Fluorescein-12-dCTP and reversely transcribed for 1h at 42ºC. Subsequently, the labeled cDNA was purified by precipitation with 3M acetate (pH 5.2) and isopropanol in order to eliminate the unincorporated nucleotides. After two washes with 70% ethanol, the labeled cDNA was dried and resuspended in 50 microl of GlassHyb Hybridization Solution (Clontech, Palo Alto, CA). The labeled cDNA was then pre-heated to 50ºC and hybridized to Human 19K Oligo Array slides (60 mers) (Center for Applied Genomics, University of Medicine of New Jersey). These slides were previously prehybridized by incubation at 42 ºC for 45 min in a solution consisting of 25% formamide, 5x SSC, 0.1% SDS, then rinsed in water and isopropanol and dried before hybridization.
After hybridization at 48 ºC for 16 hours in a slide cassette (Telechem, Sunnyvale, CA), slides were washed sequentially in a series of solutions of increasing stringency: 0.5xSSC, 0.01% SDS (5 minutes, room temperature); 0.06xSSC, 0.01% SDS (5 minutes, room temperature) and 0.06xSSC (2 minutes, room temperature). Immediately after washing, the presence of fluorescein labeled cDNAs on the microarray was detected using a fluorescent anti-fluorescein antibody conjugate and TSA detection (Micromax) according to the manufacturer´s protocol with appropriate modifications.
The GMS 418 scanner (Genetic Microsystems, Woburn, MA), a confocal scanning instrument containing 2 laser sources and high-resolution photo multiplier tubes (10 micron resolution), was used for scanning the hybridized microarrays. After image acquisition, the scanned images were imported into ImaGene 4.1 software (BioDiscovery, Marina del Re, CA) to quantify the signal intensities. Data from spots not recognized by the ImaGene analysis software were excluded from further considerations (empty, poor and negative spots). We also removed data from spots visually identified as flawed (< 15% in all arrays). Only the spots with flag value equal to 0 were included in the analysis.

Keywords = colon cancer stage II
Keywords = recurrent


title: vhl-1 1N vs. vhl-1 1H

status: Public on Jun 25 2005

city: Stanford

first: Min

last: Jiang

state: CA

country: USA

institute: Stanford University

description: Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-03/27040.gif; format: GIF

data_processing: Value is Log (base 2) of the ratio of the median of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

organism: Caenorhabditis elegans

source_name: vhl-1 1H

tag: vhl-1 1H

source_name: vhl-1 1N

tag: vhl-1 1N


title: RefDNA

status: Public on Jul 02 2005

type: genomic

city: Boston

first: William

middle: R.

last: Sellers

state: MA

address: 44 Binney Street

department: Medical Oncology

institute: Dana-Farber Cancer Institute

description: normal diploid control

molecule: genomic DNA


title: wt 1N vs. wt 1H

description: Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-03/27032.gif; format: GIF

source_name: wt 1H

tag: wt 1H

source_name: wt 1N

tag: wt 1N


title: Pericardium 0465

status: Public on Feb 21 2005

first: Jonathan

last: Pollack

address: 269 Campus Drive, CCSR3245A

department: Pathology

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-04/16015.gif

source_name: Cy3 - CRG

source_name: Cy5 - Pericardium 0465


title: Muscle, right calf 0315

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-04/15161.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-03/14254.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-04/16071.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-03/14621.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-05/17018.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-03/14265.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-03/14631.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-04/15157.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-03/14259.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-04/15158.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-03/14624.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-04/16075.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-02/13729.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-03/14628.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-05/16371.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-07/18361.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-04/16010.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-05/16397.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-04/16011.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-05/16389.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-04/16012.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-06/17378.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-03/14875.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-03/14876.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-03/14877.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-03/14878.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-04/16015.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-03/14250.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-05/17020.gif
^SAMPLE: GSM39962
^SAMPLE: GSM39963
^SAMPLE: GSM39964
^SAMPLE: GSM39965
^SAMPLE: GSM39966
^SAMPLE: GSM39967
^SAMPLE: GSM39968
^SAMPLE: GSM39969
^SAMPLE: GSM39970
^SAMPLE: GSM39971
^SAMPLE: GSM39972
^SAMPLE: GSM39973
^SAMPLE: GSM39974
^SAMPLE: GSM39975
^SAMPLE: GSM39976
^SAMPLE: GSM39977
^SAMPLE: GSM39978
^SAMPLE: GSM39979
^SAMPLE: GSM39980
^SAMPLE: GSM39981
^SAMPLE: GSM39982
^SAMPLE: GSM39983
^SAMPLE: GSM39984
^SAMPLE: GSM39985
^SAMPLE: GSM39986
^SAMPLE: GSM39987
^SAMPLE: GSM39988
^SAMPLE: GSM39989

source_name: Cy5 - Muscle, right calf 0315


title: Pancreas 0432

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-04/15160.gif

source_name: Cy5 - Pancreas 0432


title: Kidney 1651

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-05/28328.gif

source_name: Cy5 - Kidney 1651


title: Epididymus 2125

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-11/35021.gif

source_name: Cy5 - Epididymus 2125


title: Thyroid 0029

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-03/14877.gif

source_name: Cy5 - Thyroid 0029


title: Adrenal 0558

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-03/14878.gif

source_name: Cy5 - Adrenal 0558


title: Heart 0559

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-05/16389.gif

source_name: Cy5 - Heart 0559


title: Uterus, endomyometrium 0158

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-05/28323.gif

source_name: Cy5 - Uterus, endomyometrium 0158


title: Testes 1853

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-05/28615.gif

source_name: Cy5 - Testes 1853


title: Liver 0560

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-03/14876.gif

source_name: Cy5 - Liver 0560


title: Tonsil 2852

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-10/34527.gif

source_name: Cy5 - Tonsil 2852


title: Prostate 1045

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-06/17378.gif

source_name: Cy5 - Prostate 1045


title: Lymph node, axillary 1187

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-10/34529.gif

source_name: Cy5 - Lymph node, axillary 1187


title: Ovary 0408

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-04/16010.gif

source_name: Cy5 - Ovary 0408


title: Placenta 2876

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-05/28325.gif

source_name: Cy5 - Placenta 2876


title: Stomach, body 0328

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-03/14628.gif

source_name: Cy3 - CRG

source_name: Cy5 - Stomach, body 0328


title: Ovary 0466

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-04/16012.gif

source_name: Cy5 - Ovary 0466


title: Parathyroid 2995

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-10/34528.gif

source_name: Cy5 - Parathyroid 2995


title: Esophagus 0406

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-04/16011.gif

source_name: Cy5 - Esophagus 0406


title: Testes 0553

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-02/13729.gif

source_name: Cy5 - Testes 0553


title: Uterus, endomyometrium 0126

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-03/14250.gif

source_name: Cy5 - Uterus, endomyometrium 0216


title: Lymph node 2096

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-05/28321.gif

source_name: Cy5 - Lymph node 2096


title: Liver 0032

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-07/18361.gif

source_name: Cy5 - Liver 0032


title: Cervix 2385

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-10/34526.gif

source_name: Cy5 - Cervix 2385


title: Esophagus 0022

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-05/16397.gif

source_name: Cy5 - Esophagus 0022


title: Small bowel, ileum 0359

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-05/29364.gif

source_name: Cy5 - Small bowel, ileum 0359


title: Pancreas 2650

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-05/28611.gif

source_name: Cy5 - Pancreas 2650


title: Kidney 0088

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-03/14875.gif

source_name: Cy5 - Kidney 0088


title: Thyroid 0555

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-04/16075.gif

source_name: Cy5 - Thyroid 0555


title: Heart 0024

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-05/16371.gif

source_name: Cy5 - Heart 0024


title: Liver 1267

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-07/31005.gif

source_name: Cy5 - Liver 1267


title: Stomach, body 0468

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-04/15158.gif

source_name: Cy3 - CRG

source_name: Cy5 - Stomach, body 0468


title: Liver 0586

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-04/15157.gif

source_name: Cy5 - Liver 0586


title: Tonsil 1398

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-11/35037.gif

source_name: Cy5 - Tonsil 1398


title: Parathyroid 1748

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-11/35030.gif

source_name: Cy5 - Parathyroid 1748


title: Muscle, abdominal 0031

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-03/14631.gif

source_name: Cy5 - Muscle, abdominal 0031


title: Colon, sigmoid 0361

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-09/32615.gif

source_name: Cy5 - Colon, sigmoid 0361


title: Brain, frontal cortex 2272

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-05/28320.gif

source_name: Cy5 - Brain, frontal cortex 2272


title: Fallopian tube 065A

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-03/14621.gif

source_name: Cy5 - Fallopian tube 065A


title: Buffycoat 3643

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-04/27737.gif

source_name: Cy5 - Buffycoat 3643


title: Adrenal 0433

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-04/15161.gif

source_name: Cy5 - Adrenal 0433


title: Esophagus 0331

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-03/14265.gif

source_name: Cy5 - Esophagus 0331


title: Breast, lactating 0162

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-05/17018.gif

source_name: Cy5 - Breast, lactating 0162


title: Lymph node, axillary 0936

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-11/35033.gif

source_name: Cy5 - lymph node, axillary 0936


title: Lung 1351

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-02/25131.gif

source_name: Cy5 - Lung 1351


title: Liver 1274

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-07/31110.gif

source_name: Cy5 - Liver 1274


title: Colon 2075

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-09/32614.gif

source_name: Cy5 - Colon 2075


title: Buffycoat 3642

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-04/27736.gif

source_name: Cy3 - CRG

source_name: Cy5 - Buffycoat 3642


title: Spleen 0405

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-04/16071.gif

source_name: Cy5 - Spleen 0405


title: Cervix, endo cervical canal 1200

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21898.gif

source_name: Cy5 - Cervix, endo cervical canal 1200


title: Thymus 0512

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-09/32613.gif

source_name: Cy5 - Thymus 0512


title: Spleen 0125

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-03/14624.gif

source_name: Cy5 - Spleen 0125


title: Salivary gland, parotid 0493

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-09/20446.gif

source_name: Cy5 - Salivary gland, parotid 0493


title: Brain, occipital cortex 2272

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-04/27735.gif

source_name: Cy5 - Brain, occipital cortex 2272


title: Fallopian tube 065B

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-03/14254.gif

source_name: Cy5 - Fallopian tube 065B


title: Bladder 1678

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-01/24780.gif

source_name: Cy5 - Bladder 1678


title: Ovary 0314

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-03/26560.gif

source_name: Cy5 - Ovary 0314


title: Prostate 1277

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-01/24475.gif

source_name: Cy5 - Prostate 1277


title: Kidney 0265

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-03/26613.gif

source_name: Cy5 - Kidney 0265


title: Small bowel, duodenum 0825

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-03/26256.gif

source_name: Cy5 - Small bowel, duodenum 0825


title: Lung 1356

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-01/24456.gif

source_name: Cy5 - Lung 1356


title: Small bowel, duodenum 2174

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-04/27734.gif

source_name: Cy5 - Small bowel, duodenum 2174


title: Brain, temporal cortex 2272

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-05/28608.gif

source_name: Cy5 - Brain, temporal cortex 2272


title: Lung 0330

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://jdemeter-smd.stanford.edu:8000/MicroArray/gifs/2001-03/14259.gif

source_name: Cy3 - CRG

source_name: Cy5 - Lung 0330


title: Brain, occipital cortex 2273

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-03/26957.gif

source_name: Cy5 - Brain, occipital cortex 2273


title: Lymph node 1337

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-10/34531.gif

source_name: Cy5 - Lymph node 1337


title: Heart 0477

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/36420.gif
Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.81; Parameter Scan Time = 12:18:47; Parameter PMT Volts = 685; Parameter Scan Date = 2002-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 44758; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.31; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar
Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.81; Parameter Scan Time = 12:18:47; Parameter PMT Volts = 700; Parameter Scan Date = 2002-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 263753; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.13; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar

source_name: Cy5 - Heart 0477


title: Fallopian tube 2184

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/36429.gif
Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.20; Parameter Scan Time = 10:57:24; Parameter PMT Volts = 625; Parameter Scan Date = 2002-12-14; Parameter Pixel Size = 10; Parameter Laser on time = 45116; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 4.83; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar
Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.20; Parameter Scan Time = 10:57:24; Parameter PMT Volts = 715; Parameter Scan Date = 2002-12-14; Parameter Pixel Size = 10; Parameter Laser on time = 264111; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.10; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar

source_name: Cy5 - Fallopian tube 2184


title: Adrenal 1354

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-01/24160.gif

source_name: Cy5 - Adrenal 1354


title: Brain, frontal cortex 2273

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-03/26954.gif

source_name: Cy5 - Brain, frontal cortex 2273


title: Diaphragm 0366

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-09/20439.gif

source_name: Cy5 - Diaphragm 0366


title: Brain, temporal cortex 2273

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-03/26951.gif

source_name: Cy5 - Brain, temporal cortex 2273


title: Lymph node 0599

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/35858.gif

source_name: Cy5 - Lymph node 0599


title: Heart 0841

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/36427.gif
Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 29.99; Parameter Scan Time = 10:26:45; Parameter PMT Volts = 625; Parameter Scan Date = 2002-12-14; Parameter Pixel Size = 10; Parameter Laser on time = 45087; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 4.83; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar
Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 29.99; Parameter Scan Time = 10:26:45; Parameter PMT Volts = 750; Parameter Scan Date = 2002-12-14; Parameter Pixel Size = 10; Parameter Laser on time = 264082; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.08; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar

source_name: Cy5 - Heart 0841


title: Tonsil 1428

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/35859.gif

source_name: Cy5 - Tonsil 1428


title: Seminal vesicle 0235

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-10/34530.gif

source_name: Cy5 - Seminal vesicle 0235


title: Prostate 0805

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-10/20948.gif

source_name: Cy5 - Prostate 0805


title: Lung 0221

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-03/26250.gif

source_name: Cy5 - Lung 0221


title: Salivary gland, parotid 0396

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-03/26557.gif

source_name: Cy5 - Salivary gland, parotid 0396


title: Thyroid 3077

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/36419.gif
Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.66; Parameter Scan Time = 12:04:24; Parameter PMT Volts = 660; Parameter Scan Date = 2002-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 44743; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 4.82; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar
Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.66; Parameter Scan Time = 12:04:24; Parameter PMT Volts = 700; Parameter Scan Date = 2002-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 263738; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.13; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar

source_name: Cy3 - CRG

source_name: Cy5 - Thyroid 3077


title: Spleen 0089

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-07/30996.gif

source_name: Cy5 - Spleen 0089


title: Stomach, fundus 0878

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-03/26553.gif

source_name: Cy5 - Stomach, fundus 0878


title: Seminal vesicle 0233

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/35857.gif

source_name: Cy5 - Seminal vesicle 0233


title: Prostate 0845

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-10/20949.gif

source_name: Cy5 - Prostate 0845


title: Thyroid 1193

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/36426.gif
Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 29.62; Parameter Scan Time = 10:09:26; Parameter PMT Volts = 685; Parameter Scan Date = 2002-12-14; Parameter Pixel Size = 10; Parameter Laser on time = 45069; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.42; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar
Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 29.62; Parameter Scan Time = 10:09:26; Parameter PMT Volts = 700; Parameter Scan Date = 2002-12-14; Parameter Pixel Size = 10; Parameter Laser on time = 264064; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.07; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar

source_name: Cy5 - Thyroid 1193


title: Seminal vesicle 0234

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/35856.gif

source_name: Cy5 - Seminal vesicle 0234


title: Salivary gland, parotid 0506

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-09/20436.gif

source_name: Cy5 - Salivary gland, parotid 0506


title: Thyroid 0182

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/36424.gif
Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.12; Parameter Scan Time = 13:14:41; Parameter PMT Volts = 700; Parameter Scan Date = 2002-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 44812; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 4.31; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar
Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.12; Parameter Scan Time = 13:14:41; Parameter PMT Volts = 685; Parameter Scan Date = 2002-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 263808; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.17; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar

source_name: Cy5 - Thyroid 0182


title: Prostate 0782

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-10/20947.gif

source_name: Cy5 - Prostate 0782


title: Uterus, endomyometrium 002B

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-01/24776.gif

source_name: Cy5 - Uterus, endomyometrium 002B


title: day6-B-SD

status: Public on Feb 01 2005

city: University Park

first: Ross

last: Hardison

state: PA

department: BMB

institute: The Pennsylvania State University

description: The protocol for RNA isolation, labelling and hybridization is detailed at http://hils.psu.edu/stf/dnama/Protocols.html.

organism: Mus musculus

source_name: No HMBA induction (control)

source_name: 6 Days after HMBA induction


title: Thyroid 0838

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/36425.gif
Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.15; Parameter Scan Time = 13:29:14; Parameter PMT Volts = 680; Parameter Scan Date = 2002-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 44827; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 4.34; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar
Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.15; Parameter Scan Time = 13:29:14; Parameter PMT Volts = 700; Parameter Scan Date = 2002-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 263822; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.17; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar

source_name: Cy5 - Thyroid 0838


title: asthma_OVA24h_EP3agonist_1

status: Public on Feb 18 2005

city: Kyoto

first: Eri

last: Segi-Nishida

country: Japan

institute: Kyoto University

description: OVA-induced asthma model:OVA challenged and agonist of PGE receptor EP3 subtype treated  #1


title: Heart 2869

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/36431.gif
Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.48; Parameter Scan Time = 11:25:07; Parameter PMT Volts = 550; Parameter Scan Date = 2002-12-14; Parameter Pixel Size = 10; Parameter Laser on time = 45144; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 4.73; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar
Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.48; Parameter Scan Time = 11:25:07; Parameter PMT Volts = 750; Parameter Scan Date = 2002-12-14; Parameter Pixel Size = 10; Parameter Laser on time = 264139; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.11; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar

source_name: Cy5 - Heart 2869


title: day5-B-SD

source_name: 5 Days after HMBA induction


title: Testes 1068

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-01/24778.gif

source_name: Cy3 - CRG

source_name: Cy5 - Testes 1068


title: Tonsil 3011

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-11/35026.gif

source_name: Cy5 - Tonsil 3011


title: Ovary 0538

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-03/26268.gif

source_name: Cy5 - Ovary 0538


title: day3-B-SD

source_name: 3 Days after HMBA induction


title: day0-B-SD


title: day2-B-SD

source_name: 2 Days after HMBA induction


title: Kidney 1594

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-05/29367.gif

source_name: Cy5 - Kidney 1594


title: Gallbladder 2131

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/36422.gif
Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.09; Parameter Scan Time = 12:52:21; Parameter PMT Volts = 675; Parameter Scan Date = 2002-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 44790; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 4.25; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar
Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.09; Parameter Scan Time = 12:52:21; Parameter PMT Volts = 700; Parameter Scan Date = 2002-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 263785; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.16; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar

source_name: Cy5 - Gallbladder 2131


title: Bladder 1004

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21776.gif

source_name: Cy5 - Bladder 1004


title: Vagina 0304

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-03/26263.gif

source_name: Cy5 - Vagina 0304


title: Kidney 0226

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-05/29366.gif

source_name: Cy5 - Kidney 0226


title: Parathyroid 0499

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/35855.gif

source_name: Cy5 - Parathyroid 0499


title: Salivary gland, parotid 1762

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-01/24158.gif

source_name: Cy5 - Salivary gland parotid 1762


title: Colon, ascending 0222

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-10/20950.gif

source_name: Cy5 - Colon, ascending 0222


title: Uterine corpus, myometriun 1205

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-11/21775.gif

source_name: Cy5 - Uterine corpus, myometrium 1205


title: Heart 0980

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/36430.gif
Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.32; Parameter Scan Time = 11:11:56; Parameter PMT Volts = 625; Parameter Scan Date = 2002-12-14; Parameter Pixel Size = 10; Parameter Laser on time = 45131; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 4.83; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar
Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.32; Parameter Scan Time = 11:11:56; Parameter PMT Volts = 715; Parameter Scan Date = 2002-12-14; Parameter Pixel Size = 10; Parameter Laser on time = 264126; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.11; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar

source_name: Cy5 - Heart 0980


title: Thymus 0035

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-09/20433.gif

source_name: Cy5 - Thymus 0035


title: Fallopian tube 2386

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2001-04/15160.gif
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/36421.gif
Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.00; Parameter Scan Time = 12:36:25; Parameter PMT Volts = 680; Parameter Scan Date = 2002-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 44776; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.80; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar
Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.00; Parameter Scan Time = 12:36:25; Parameter PMT Volts = 700; Parameter Scan Date = 2002-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 263771; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.15; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Radha,,Shyamsundar
^SAMPLE: GSM39991

source_name: Cy3 - CRG

source_name: Cy5 - Fallopian tube 2386


title: Cervix 2209

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-12/35854.gif

source_name: Cy5 - Cervix 2209


title: ENCODE: RNA PolII-HCT116 Rep3

status: Public on Sep 21 2004

city: San Diego

first: Chunxu

last: Qu

department: Gene Regulation

institute: Ludwig Institute for Cancer Research

description: Genome-wide location analysis of RNA polymerase II binding at ENCODE regions in HCT116 cells.  Replicate 3 of 3.

source_name: Chromatin immunoprecipitated DNA using RNA polymerase II antibody

source_name: input DNA


title: Uterus, endomyometrium 0002

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-02/25137.gif

source_name: Cy5 - Uterus, endomyometrium 0002


title: ENCODE: RNA PolII-THP1 Rep3

description: Genome-wide location analysis of RNA polymerase II binding at ENCODE regions in THP1 cells.  Replicate 3 of 3.


title: ENCODE: RNA PolII-HCT116 Rep1

description: Genome-wide location analysis of RNA polymerase II binding at ENCODE regions in HCT116 cells.  Replicate 1 of 3.


title: ENCODE: RNA PolII-THP1 Rep1

description: Genome-wide location analysis of RNA polymerase II binding at ENCODE regions in THP1 cells.  Replicate 1 of 3.


title: ENCODE: RNA PolII-HeLa Rep1

description: Genome-wide location analysis of RNA polymerase II binding at ENCODE regions in HeLa cells.  Replicate 1 of 3.


title: Adrenal 1111

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-01/24469.gif

source_name: Cy5 - Adrenal 1111


title: ENCODE: RNA PolII-IMR90 Rep3

description: Genome-wide location analysis of RNA polymerase II binding at ENCODE regions in IMR90 cells.  Replicate 3 of 3.


title: ENCODE: RNA PolII-THP1 Rep2

description: Genome-wide location analysis of RNA polymerase II binding at ENCODE regions in THP1 cells.  Replicate 2 of 3.


title: Stomach, pylorus 2173

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-05/29365.gif

source_name: Cy5 - Stomach, pylorus 2173


title: ENCODE: RNA PolII-HeLa Rep2

description: Genome-wide location analysis of RNA polymerase II binding at ENCODE regions in HeLa cells.  Replicate 2 of 3.


title: ENCODE: RNA PolII-IMR90 Rep2

description: Genome-wide location analysis of RNA polymerase II binding at ENCODE regions in IMR90 cells.  Replicate 2 of 3.


title: ENCODE: RNA PolII-IMR90 Rep1

description: Genome-wide location analysis of RNA polymerase II binding at ENCODE regions in IMR90 cells.  Replicate 1 of 3.


title: ENCODE: TAF1-THP1 Rep3

description: Genome-wide location analysis of TAF1 binding at ENCODE regions in THP1 cells.  Replicate 3 of 3.

source_name: Chromatin immunoprecipitated DNA using TAF1 antibody


title: Brain, occipital cortex 2271

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-01/24156.gif

source_name: Cy5 - Brain, occipital cortex 2271


title: Brain, frontal cortex 2271

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-01/24155.gif

source_name: Cy5 - Brain, frontal cortex 2271


title: ENCODE: TAF1-THP1 Rep1

description: Genome-wide location analysis of TAF1 binding at ENCODE regions in THP1 cells.  Replicate 1 of 3.


title: ENCODE: RNA PolII-HeLa Rep3

description: Genome-wide location analysis of RNA polymerase II binding at ENCODE regions in HeLa cells.  Replicate 3 of 3.


title: ENCODE: TAF1-HeLa Rep3

description: Genome-wide location analysis of TAF1 binding at ENCODE regions in HeLa cells.  Replicate 3 of 3.


title: ENCODE: TAF1-HeLa Rep1

description: Genome-wide location analysis of TAF1 binding at ENCODE regions in HeLa cells.  Replicate 1 of 3.


title: ENCODE: TAF1-HCT116 Rep2

description: Genome-wide location analysis of TAF1 binding at ENCODE regions in HCT116 cells.  Replicate 2 of 3.


title: Ovary 1080

description:
Simple annotation: Normal tissue, Normal tissue
Image: http://genome-www5.stanford.edu/MicroArray/gifs/2002-01/24462.gif

source_name: Cy5 - Ovary 1080


title: Li-NDI 2

status: Public on Sep 01 2004

city: Aarhus C

first: Aleksandra

last: Rojek

address: building 233/234

country: Denmark

institute: Institute of Anatomy, Aarhus University

description: The rats were treated with Li for 1 month. RNA from the kidney inner medulla of Li-treated rat was labeled red (channel 1), RNA from control labeled green (channel 2).

organism: Rattus norvegicus

source_name: Inner medulla, Li-treated rat 3+4

source_name: Inner medulla, control rat 3+4


title: ENCODE: TAF1-HeLa Rep2

description: Genome-wide location analysis of TAF1 binding at ENCODE regions in HeLa cells.  Replicate 2 of 3.


title: Li-NDI 3

source_name: Inner medulla, Li-treated rat 5

source_name: Inner medulla, control rat 5


title: ENCODE: TAF1-HCT116 Rep1

description: Genome-wide location analysis of TAF1 binding at ENCODE regions in HCT116 cells.  Replicate 1 of 3.


title: ENCODE: TAF1-THP1 Rep2

description: Genome-wide location analysis of TAF1 binding at ENCODE regions in THP1 cells.  Replicate 2 of 3.


title: Li-NDI 1

source_name: Inner medulla, Li-treated rat 1+2

source_name: Inner medulla, control rat 1+2


title: GM13044_rep2

status: Public on Aug 12 2004

city: Philadelphia

first: Michael

middle: Patrick

last: Morley

address: 3400 Civic Center Blvd, Bldg 421

department: Penn Cardiovascular Institute

institute: Perelman School of Medicine at the University of Pennsylvania

description: Sample description = RNA was extracted from lymphoblastoid cells of members of the CEPH Utah pedigrees.  The cells were grown at a density of 5 x 105 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.  RNA samples were processed and hybridized onto the Affymetrix Human Focus Arrays according to the manufacturer’s suggestion.  Arrays were scanned and analyzed using MAS 5.0 software (Affymetrix).

source_name: Lymphoblastoid cell line

tag: Coriell cell line repository identifier


title: ENCODE: TAF1-HCT116 Rep3

description: Genome-wide location analysis of TAF1 binding at ENCODE regions in HCT116 cells.  Replicate 3 of 3.


title: ENCODE: TAF1-IMR90 Rep2

description: Genome-wide location analysis of TAF1 binding at ENCODE regions in IMR90 cells.  Replicate 2 of 3.


title: GM13051_rep2


title: GM13047_rep2


title: HUVEC-rep2-control-1h

status: Public on Aug 20 2004

city: Munich

first: Andreas

middle: Johann Richard

last: Habenicht

state: Bavaria

address: Pettenkoferstraße 9a

department: Medicine

country: Germany

institute: Ludwig Maximilians Universität München

description: Cells stimulated for 1 hour with 0.05% ethanol

data_processing: GCOS

label: Biotin/PE

source_name: HUVEC passage 1

tag: Confluent HUVEC passage 1,

tag: serum-free culture conditions,

tag: stimulation

value: 48 h after medium change


title: GM13047_rep1


title: GM13044_rep1


title: GM13042_rep2


title: ENCODE: TAF1-IMR90 Rep1

description: Genome-wide location analysis of TAF1 binding at ENCODE regions in IMR90 cells.  Replicate 1 of 3.


title: GM12923_rep2


title: GM13051_rep1


title: HUVEC-rep2-LTD4-1h

description: Cells stimulated for 1 hour with 100 nM LTD4


title: ENCODE: TAF1-IMR90 Rep3

description: Genome-wide location analysis of TAF1 binding at ENCODE regions in IMR90 cells.  Replicate 3 of 3.


title: GM12923_rep1


title: GM12922_rep1


title: GM13042_rep1


title: ENCODE: RNA PolII-HCT116 Rep2

description: Genome-wide location analysis of RNA polymerase II binding at ENCODE regions in HCT116 cells.  Replicate 2 of 3.

source_name: Chromatin immunoprecipitated DNA using RNA polymerase II antibody


title: GM12922_rep2


title: GM12921_rep2


title: GM12924_rep2


title: GM12921_rep1


title: GM12875_rep1


title: GM12874_rep1


title: GM12873_rep1


title: GM12924_rep1


title: GM12875_rep2


title: GM12873_rep2


title: GM12874_rep2


title: GM12872_rep2


title: GM12843_rep2


title: GM12872_rep1


title: GM12843_rep1


title: GM12830_rep1


title: GM12830_rep2


title: GM12840_rep2


title: GM12828_rep1


title: GM12828_rep2


title: GM12815_rep2


title: GM12841_rep2


title: GM12829_rep2


title: GM12827_rep2


title: GM12842_rep1


title: GM12841_rep1


title: GM12814_rep2


title: GM12815_rep1


title: GM12814_rep1


title: GM12842_rep2


title: GM12840_rep1


title: GM12829_rep1


title: GM12827_rep1


title: GM12778_rep2


title: GM12776_rep2


title: GM12803_rep1


title: GM12805_rep1


title: GM12802_rep2


title: GM12808_rep1


title: GM12807_rep1


title: GM12801_rep1


title: GM12802_rep1


title: GM12813_rep2


title: GM12812_rep1


title: GM12810_rep1


title: GM12806_rep1


title: GM12777_rep2


title: GM12778_rep1


title: GM12775_rep2


title: GM12801_rep2


title: GM12812_rep2


title: GM12763_rep1


title: GM12775_rep1


title: GM12776_rep1


title: GM12762_rep2


title: GM12813_rep1


title: GM12809_rep1


title: GM12763_rep2


title: GM12804_rep1


title: GM12777_rep1


title: GM12762_rep1


title: GM12761_rep2


title: GM12761_rep1


title: GM12760_rep2


title: GM12750_rep2


title: GM12751_rep2


title: GM12287_rep2


title: GM12749_rep2


title: GM12751_rep1


title: GM12760_rep1


title: GM12749_rep1


title: GM12750_rep1


title: GM12328_rep1


title: GM12283_rep1


title: GM12280_rep1


title: GM12748_rep1


title: GM12287_rep1


title: GM12283_rep2


title: GM12748_rep2


title: GM12284_rep1


title: GM12286_rep1


title: GM12278_rep1


title: GM12279_rep1


title: GM12282_rep2


title: GM12282_rep1


title: GM12275_rep2


title: GM12285_rep1


title: GM12276_rep1


title: GM12286_rep2


title: GM12281_rep1


title: GM12277_rep1


title: GM12274_rep1


title: GM12275_rep1


title: GM12273_rep1


title: GM12274_rep2


title: GM12272_rep2


title: GM12267_rep1


title: GM12273_rep2


title: GM12249_rep1


title: GM12269_rep1


title: GM12270_rep1


title: GM12251_rep1


title: GM12272_rep1


title: GM12241_rep1


title: GM12250_rep1


title: GM12249_rep2


title: GM12250_rep2


title: GM12252_rep1


title: GM12265_rep1


title: GM12266_rep1


title: GM12247_rep1


title: GM12243_rep1


title: GM12271_rep1


title: GM12240_rep1


title: GM12268_rep1


title: GM12251_rep2


title: GM12248_rep1


title: GM12248_rep2


title: GM12253_rep1


title: GM12246_rep1


title: GM12245_rep1


title: GM12236_rep2


title: GM12239_rep1


title: GM12236_rep1


title: GM12239_rep2


title: GM12157_rep1


title: GM12156_rep2


title: GM12153_rep1


title: GM12155_rep1


title: GM12156_rep1


title: GM12151_rep1


title: GM12155_rep2


title: GM12152_rep1


title: GM12154_rep2


title: GM12150_rep1


title: GM12046_rep1


title: GM12146_rep1


title: GM12149_rep1


title: GM12148_rep1


title: GM12154_rep1


title: GM12044_rep1


title: GM12147_rep1


title: GM12044_rep2


title: GM12144_rep2


title: GM12145_rep1


title: GM12045_rep1


title: GM12145_rep2


title: GM12043_rep2


title: GM12046_rep2


title: GM12144_rep1


title: GM12146_rep2


title: GM12045_rep2


title: GM12042_rep1


title: GM12041_rep1


title: GM12043_rep1


title: GM12040_rep1


title: GM12039_rep1


title: GM12038_rep1


title: GM12037_rep1


title: GM11994_rep1


title: GM11995_rep1


title: GM11993_rep2


title: GM11994_rep2


title: GM11988_rep1


title: GM11987_rep1


title: GM11995_rep2


title: GM12036_rep1


title: GM11985_rep1


title: GM11992_rep2


title: GM11993_rep1


title: GM11992_rep1


title: GM11989_rep1


title: GM11984_rep1


title: GM11982_rep1


title: GM11933_rep1


title: GM11932_rep1


title: GM12035_rep1


title: GM11931_rep1


title: GM11932_rep2


title: GM11986_rep1


title: GM11983_rep1


title: GM11930_rep2


title: GM11931_rep2


title: GM11929_rep1


title: GM11928_rep1


title: GM11924_rep1


title: GM11927_rep1


title: GM11926_rep1


title: GM11923_rep1


title: GM11922_rep1


title: GM11920_rep2


title: GM11918_rep2


title: GM11918_rep1


title: GM11919_rep2


title: GM11920_rep1


title: GM11912_rep1


title: GM11913_rep1


title: GM11925_rep1


title: GM11917_rep1


title: GM11914_rep1


title: GM11919_rep1


title: GM11917_rep2


title: GM11916_rep1


title: GM11910_rep1


title: GM11915_rep1


title: GM11882_rep1


title: GM11911_rep1


title: GM11883_rep1


title: GM11881_rep2


title: GM11909_rep1


title: GM11882_rep2


title: GM11880_rep2


title: GM11881_rep1


title: GM11878_rep1


title: GM11880_rep1


title: GM11875_rep1


title: GM11877_rep1


title: GM11871_rep1


title: GM11870_rep1


title: GM10860_rep2


title: GM11821_rep1


title: GM11820_rep1


title: GM11872_rep1


title: GM10859_rep2


title: GM10861_rep2


title: GM10861_rep1


title: GM10858_rep2


title: GM10858_rep1


title: GM10857_rep2


title: GM10852_rep2


title: GM10845_rep2


title: GM10852_rep1


title: GM11879_rep2


title: GM11879_rep1


title: GM11876_rep1


title: GM10845_rep1


title: GM10859_rep1


title: GM10857_rep1


title: GM10843_rep2


title: GM10843_rep1


title: GM10844_rep2


title: GM10860_rep1


title: GM10844_rep1


title: GM10842_rep1


title: GM10840_rep2


title: GM10837_rep2


title: GM10841_rep1


title: GM10842_rep2


title: GM10841_rep2


title: GM10840_rep1


title: GM10836_rep1


title: GM10831_rep1


title: GM10835_rep1


title: GM10836_rep2


title: GM10835_rep2


title: GM10831_rep2


title: GM07679_rep1


title: GM10834_rep1


title: GM10837_rep1


title: GM10830_rep2


title: GM10830_rep1


title: GM07355_rep1


title: GM10834_rep2


title: GM07357_rep2


title: GM07678_rep1


title: GM07357_rep1


title: GM07356_rep1


title: GM07354_rep1


title: GM07351_rep1


title: GM07352_rep1


title: GM07350_rep1


title: GM07349_rep1


title: GM07348_rep1


title: GM07347_rep1


title: GM07347_rep2


title: GM07346_rep2


title: GM07348_rep2


title: GM07346_rep1


title: GM07353_rep1


title: GM07349_rep2


title: GM07345_rep2


title: GM07341_rep1


title: GM07343_rep1


title: GM07056_rep2


title: GM07342_rep1


title: GM07344_rep1


title: GM07341_rep2


title: GM07345_rep1


title: GM07055_rep2


title: GM07056_rep1


title: GM07055_rep1


title: GM07062_rep1


title: GM07053_rep1


title: GM07051_rep2


title: GM07052_rep1


title: GM07031_rep2


title: GM07044_rep1


title: GM07038_rep2


title: GM07048_rep1


title: GM07029_rep2


title: GM07026_rep1


title: GM07034_rep1


title: GM07048_rep2


title: GM07034_rep2


title: GM07049_rep1


title: GM07022_rep2


title: GM07019_rep1


title: GM07017_rep1


title: GM07022_rep1


title: GM11933_rep2


title: GM07049_rep2


title: GM07038_rep1


title: GM07027_rep1


title: GM07029_rep1


title: GM07012_rep1


title: GM07019_rep2


title: GM07010_rep1


title: GM07020_rep1


title: GM07031_rep1


title: GM07040_rep1


title: GM07051_rep1


title: GM07021_rep1


title: GM07017_rep2


title: GM07011_rep1


title: GM11930_rep1


title: GM07008_rep1


title: GM07009_rep1


title: GM07004_rep1


title: GM06993_rep2


title: GM07000_rep2


title: GM07002_rep2


title: GM06994_rep1


title: GM06987_rep2


title: GM06991_rep2


title: GM06994_rep2


title: GM06985_rep2


title: GM07006_rep1


title: GM06991_rep1


title: GM06987_rep1


title: GM07002_rep1


title: GM07000_rep1


title: GM06982_rep1


title: GM06993_rep1


title: GM06985_rep1


title: Regulation of an overlapping set of genes - Slide 6

status: Public on Aug 06 2004

first: Shuang

last: Chang

state: MO

department: Biology

institute: Washington University

description:
Category: DNA metabolism
Subcategory: treated
Slide 6 - Testing the hypothesis that cytosine methylation and histone deacetylation regulate an overlapping set of genes
Experimenter: Craig Pikaard
Contact email: pikaard@biology.wustl.edu
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=00LaserPower=00
Lot batch = K157

organism: Arabidopsis thaliana

source_name: control

source_name: Aza + TSA


title: GM00156 8 Hr Time Point

status: Public on Jun 24 2004

city: Gaithersburg

first: Jeff

last: Kiefer

state: MD

address: 20 Firstfield Rd,  Suite 110

department: CDDL

institute: Translational Genomics Research Institute (TGen)

description: GM00156 (Coriell) cells were treated with and without 100ug/ml Emetine Dihydrochloride Hydrate (Fluka, Buchs, Swizerland). Both Emetine-treated and untreated control cells were then incubated at 37°C for 10 hours. After the incubation, Actinomycin D (Sigma-Aldrich, St Louis, MO) with the final concentration of 5ug/ml, was added to the treated and untreated cells to stop new transcription. The 8 hour time point was harvested and cell pellets were snap-frozen and mRNA extracted by using FastTrack kit (Invitrogen) according to the manufacturer’s instructions. The untreated sample was hybridized against the Emetine-treated equivalent. Four ug of untreated mRNA was labeled with Cy5-dUTP and four ug of Emetine-treated mRNA with Cy3-dUTP (Amersham Biosciences, Piscataway, NJ) as previously described (Mousses et al, 2000). Average intensities of the tumor samples were divided by the average intensities of the reference sample at each microarray spot after background intensity subtraction. Within-slide normalization was performed with ratio statistics method using housekeeping genes as described previously (Chen et al, 1997). The data were quality filtered with ratio quality method (Chen et al, 2002), which computes a quality value for each ratio. The scale for the quality values is from zero (poor quality) to one (good quality). Here, all ratios having quality value below 0.5 were discarded from the subsequent analysis.

source_name: GM00156 8 Hr Time Point Emetine Treated

source_name: GM00156 8 HrTime Point Un-Treated


title: Regulation of an overlapping set of genes - Slide 5(Repeat)

description:
Category: DNA metabolism
Subcategory: treated
Slide 5(Repeat) - Testing the hypothesis that cytosine methylation and histone deacetylation regulate an overlapping set of genes
Experimenter: Craig Pikaard
Contact email: pikaard@biology.wustl.edu
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=00LaserPower=00
Lot batch = K176

source_name: TSA


title: Regulation of an overlapping set of genes - Slide 1(Repeat)

description:
Category: DNA metabolism
Subcategory: treated
Slide 1(Repeat) - Testing the hypothesis that cytosine methylation and histone deacetylation regulate an overlapping set of genes
Experimenter: Craig Pikaard
Contact email: pikaard@biology.wustl.edu
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=00LaserPower=00
Lot batch = K166

source_name: aza-dC


title: Regulation of an overlapping set of genes - Slide 11(Repeat)

description:
Category: DNA metabolism
Subcategory: treated
Slide 11(Repeat) - Testing the hypothesis that cytosine methylation and histone deacetylation regulate an overlapping set of genes
Experimenter: Craig Pikaard
Contact email: pikaard@biology.wustl.edu
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=00LaserPower=00
Lot batch = K173


title: Regulation of an overlapping set of genes - Slide 8(Repeat 2)

description:
Category: DNA metabolism
Subcategory: treated
Slide 8(Repeat 2) - Testing the hypothesis that cytosine methylation and histone deacetylation regulate an overlapping set of genes
Experimenter: Craig Pikaard
Contact email: pikaard@biology.wustl.edu
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=00LaserPower=00
Lot batch = K184


title: GM00156 10' Time Point

description: GM00156 (Coriell) cells were treated with and without 100ug/ml Emetine Dihydrochloride Hydrate (Fluka, Buchs, Swizerland). Both Emetine-treated and untreated control cells were then incubated at 37°C for 10 hours. After the incubation, Actinomycin D (Sigma-Aldrich, St Louis, MO) with the final concentration of 5ug/ml, was added to the treated and untreated cells to stop new transcription. The 10 min time point was harvested and cell pellets were snap-frozen and mRNA extracted by using FastTrack kit (Invitrogen) according to the manufacturer’s instructions. The untreated sample was hybridized against the Emetine-treated equivalent. Four ug of untreated mRNA was labeled with Cy5-dUTP and four ug of Emetine-treated mRNA with Cy3-dUTP (Amersham Biosciences, Piscataway, NJ) as previously described (Mousses et al, 2000). Average intensities of the tumor samples were divided by the average intensities of the reference sample at each microarray spot after background intensity subtraction. Within-slide normalization was performed with ratio statistics method using housekeeping genes as described previously (Chen et al, 1997). The data were quality filtered with ratio quality method (Chen et al, 2002), which computes a quality value for each ratio. The scale for the quality values is from zero (poor quality) to one (good quality). Here, all ratios having quality value below 0.5 were discarded from the subsequent analysis.

source_name: GM00156 10' Time Point Emetine Treated

source_name: GM00156 10' Time Point Un-Treated


title: Regulation of an overlapping set of genes - Slide 2(Repeat)

description:
Category: DNA metabolism
Subcategory: treated
Slide 2(Repeat) - Testing the hypothesis that cytosine methylation and histone deacetylation regulate an overlapping set of genes
Experimenter: Craig Pikaard
Contact email: pikaard@biology.wustl.edu
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=00LaserPower=00
Lot batch = K174


title: GM00156 30' Time Point

description: GM00156 (Coriell) cells were treated with and without 100ug/ml Emetine Dihydrochloride Hydrate (Fluka, Buchs, Swizerland). Both Emetine-treated and untreated control cells were then incubated at 37°C for 10 hours. After the incubation, Actinomycin D (Sigma-Aldrich, St Louis, MO) with the final concentration of 5ug/ml, was added to the treated and untreated cells to stop new transcription. The 30 min time point was harvested and cell pellets were snap-frozen and mRNA extracted by using FastTrack kit (Invitrogen) according to the manufacturer’s instructions. The untreated sample was hybridized against the Emetine-treated equivalent. Four ug of untreated mRNA was labeled with Cy5-dUTP and four ug of Emetine-treated mRNA with Cy3-dUTP (Amersham Biosciences, Piscataway, NJ) as previously described (Mousses et al, 2000). Average intensities of the tumor samples were divided by the average intensities of the reference sample at each microarray spot after background intensity subtraction. Within-slide normalization was performed with ratio statistics method using housekeeping genes as described previously (Chen et al, 1997). The data were quality filtered with ratio quality method (Chen et al, 2002), which computes a quality value for each ratio. The scale for the quality values is from zero (poor quality) to one (good quality). Here, all ratios having quality value below 0.5 were discarded from the subsequent analysis.

source_name: GM00156 30' Time Point Emetine Treated

source_name: GM00156 30' Time Point Un-Treated


title: Regulation of an overlapping set of genes - Slide 3

description:
Category: DNA metabolism
Subcategory: treated
Slide 3 - Testing the hypothesis that cytosine methylation and histone deacetylation regulate an overlapping set of genes
Experimenter: Craig Pikaard
Contact email: pikaard@biology.wustl.edu
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=00LaserPower=00
Lot batch = K156


title: GM00156 0' Time Point

description: GM00156 (Coriell) cells were treated with and without 100ug/ml Emetine Dihydrochloride Hydrate (Fluka, Buchs, Swizerland).  Both Emetine-treated and untreated control cells were then incubated at 37°C for 10 hours. After the incubation, Actinomycin D (Sigma-Aldrich, St Louis, MO) with the final concentration of 5ug/ml, was added to the treated and untreated cells to stop new transcription. The first time point (0 min) was harvested for both treated and untreated cells. Cell pellets were snap-frozen and mRNA extracted by using FastTrack kit (Invitrogen) according to the manufacturer’s instructions. The Emetine-treatedsample was hybridized against the Emetine-treated equivalent. Four ug of untreated mRNA was labeled with Cy5-dUTP and four ug of Emetine-treated mRNA with Cy3-dUTP (Amersham Biosciences, Piscataway, NJ) as previously described (Mousses et al, 2000).   Average intensities of the tumor samples were divided by the average intensities of the reference sample at each microarray spot after background intensity subtraction. Within-slide normalization was performed with ratio statistics method using housekeeping genes as described previously (Chen et al, 1997).  The data were quality filtered with ratio quality method (Chen et al, 2002),  which computes a quality value for each ratio. The scale for the quality values is from zero (poor quality) to one (good quality). Here, all ratios having quality value below 0.5 were discarded from the subsequent analysis.

source_name: GM00156 0' Time Point Emetine Treated

source_name: GM00156 0' Time Point Un-Treated


title: CEA_SGF:AHX024

status: Public on Jun 01 2004

city: Versailles

first: Nelly

last: Godefroy

address: 45 Avenue des Etats Unis

department: Laboratoire de Genetique et de Biologie Cellulaire

country: France

institute: Universite de Versailles

description: P53 inactive (Cy5) versus P53 inactive (Cy3) (33°C versus 33°C)

source_name: 33°C: P53 inactive


title: GM00156 0' Time Point Self vs. Self

description: GM00156 (Coriell) cells were treated with and without 100ug/ml Emetine Dihydrochloride Hydrate (Fluka, Buchs, Swizerland).  Both Emetine-treated and untreated control cells were then incubated at 37°C for 10 hours. After the incubation, the first time point (0 min) was harvested for both treated and untreated cells. Cell pellets were snap-frozen and mRNA extracted by using FastTrack kit (Invitrogen) according to the manufacturer’s instructions. The Emetine-treatedsample was hybridized against the Emetine-treated equivalent. Four ug of untreated mRNA was labeled with Cy5-dUTP and four ug of Emetine-treated mRNA with Cy3-dUTP (Amersham Biosciences, Piscataway, NJ) as previously described (Mousses et al, 2000).   Average intensities of the tumor samples were divided by the average intensities of the reference sample at each microarray spot after background intensity subtraction. Within-slide normalization was performed with ratio statistics method using housekeeping genes as described previously (Chen et al, 1997).  The data were quality filtered with ratio quality method (Chen et al, 2002), which computes a quality value for each ratio. The scale for the quality values is from zero (poor quality) to one (good quality). Here, all ratios having quality value below 0.5 were discarded from the subsequent analysis.


title: GM00156 1 Hr Time Point

description: GM00156 (Coriell) cells were treated with and without 100ug/ml Emetine Dihydrochloride Hydrate (Fluka, Buchs, Swizerland). Both Emetine-treated and untreated control cells were then incubated at 37°C for 10 hours. After the incubation, Actinomycin D (Sigma-Aldrich, St Louis, MO) with the final concentration of 5ug/ml, was added to the treated and untreated cells to stop new transcription. The 1 hour time point was harvested and cell pellets were snap-frozen and mRNA extracted by using FastTrack kit (Invitrogen) according to the manufacturer’s instructions. The untreated sample was hybridized against the Emetine-treated equivalent. Four ug of untreated mRNA was labeled with Cy5-dUTP and four ug of Emetine-treated mRNA with Cy3-dUTP (Amersham Biosciences, Piscataway, NJ) as previously described (Mousses et al, 2000). Average intensities of the tumor samples were divided by the average intensities of the reference sample at each microarray spot after background intensity subtraction. Within-slide normalization was performed with ratio statistics method using housekeeping genes as described previously (Chen et al, 1997). The data were quality filtered with ratio quality method (Chen et al, 2002), which computes a quality value for each ratio. The scale for the quality values is from zero (poor quality) to one (good quality). Here, all ratios having quality value below 0.5 were discarded from the subsequent analysis.

source_name: GM00156 1 Hr Time Point Emetine Treated

source_name: GM00156 1 HrTime Point Un-Treated


title: CEA_SGF:AHX017

description: P53 inactive (Cy3) versus P53 inactive (Cy5) (33°C versus 33°C)


title: Regulation of an overlapping set of genes - Slide 4

description:
Category: DNA metabolism
Subcategory: treated
Slide 4 - Testing the hypothesis that cytosine methylation and histone deacetylation regulate an overlapping set of genes
Experimenter: Craig Pikaard
Contact email: pikaard@biology.wustl.edu
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=00LaserPower=00
Lot batch = K175

source_name: Aza-dC


title: CEA_SGF:AHX016


title: Regulation of an overlapping set of genes - Slide 7

description:
Category: DNA metabolism
Subcategory: treated
Slide 7 - Testing the hypothesis that cytosine methylation and histone deacetylation regulate an overlapping set of genes
Experimenter: Craig Pikaard
Contact email: pikaard@biology.wustl.edu
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=00LaserPower=00
Lot batch = K171


title: CEA_SGF:AHX008

description: P53 active/Caspase inactive (Cy5) versus P53 inactive (Cy3) (39°C ZVAD versus 33°C)

source_name: 39°C+ZVAD: P53 active, Caspases inhibited


title: CEA_SGF:AHX025


title: CEA_SGF:AHX009

description: P53 active/Caspase inactive (Cy3) versus P53 inactive (Cy5) (39°C ZVAD versus 33°C)


title: CEA_SGF:AHX007

description: P53 active (Cy3) versus P53 inactive (Cy5) (39°C versus 33°C)

source_name: 39°C: P53 active


title: CEA_SGF:AHX003


title: CEA_SGF:AHX005


title: CEA_SGF:AHX004


title: CEA_SGF:AHX006

description: P53 active (Cy5) versus P53 inactive (Cy3) (39°C versus 33°C)


title: Regulation of an overlapping set of genes - Slide 10

description:
Category: DNA metabolism
Subcategory: treated
Slide 10 - Testing the hypothesis that cytosine methylation and histone deacetylation regulate an overlapping set of genes
Experimenter: Craig Pikaard
Contact email: pikaard@biology.wustl.edu
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=00LaserPower=00
Lot batch = K172

source_name: control


title: CEA_SGF:AHX002


title: AML 63

status: Public on Apr 15 2004

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix Pro
Software version: 3.0.6.81
Scanning parameters: PMTVolts=750640LaserPower=3.564.65
Lot batch = shdj111

source_name: CRH

source_name: AML 63


title: AML 106

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix Pro
Software version: 3.0.6.81
Scanning parameters: PMTVolts=690650LaserPower=3.574.68
Lot batch = shdj113

source_name: AML 106


title: AML 51

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix Pro
Software version: 3.0.6.81
Scanning parameters: PMTVolts=770610LaserPower=3.564.65
Lot batch = shdj110

source_name: AML 51


title: AML 52

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix Pro
Software version: 3.0.6.81
Scanning parameters: PMTVolts=690650LaserPower=3.574.65
Lot batch = shdj112

source_name: AML 52


title: AML 8

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=770630LaserPower=4.493.89
Lot batch = shdj109

source_name: AML 8


title: AML 73

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=720650LaserPower=4.53.73
Lot batch = shdj107

source_name: AML 73


title: AML 98

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=650650LaserPower=4.664.29
Lot batch = shdj101

source_name: AML 98


title: AML 94

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=730650LaserPower=4.664.71
Lot batch = shdj103

source_name: AML 94


title: AML 22

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=710650LaserPower=4.674.66
Lot batch = shdj099

source_name: AML 22


title: AML 11

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=710650LaserPower=4.514.16
Lot batch = shdj105

source_name: AML 11


title: AML 31

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=660650LaserPower=4.513.86
Lot batch = shdj106

source_name: AML 31


title: AML 7

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=750650LaserPower=4.53.65
Lot batch = shdj108

source_name: AML 7


title: AML 114

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=660650LaserPower=4.534.37
Lot batch = shdj104

source_name: AML 114


title: AML 16

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=750640LaserPower=4.664.43
Lot batch = shdj102

source_name: AML 16


title: AML 89

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=710650LaserPower=4.394.32
Lot batch = shdj096

source_name: AML 89


title: AML 118

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=660630LaserPower=3.734.59
Lot batch = shco057

source_name: AML 118


title: AML 117

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=680610LaserPower=3.844.56
Lot batch = shco054

source_name: CRH

source_name: AML 117


title: AML 90

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=730640LaserPower=4.414.53
Lot batch = shdj095

source_name: AML 90


title: AML 33

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=700650LaserPower=4.383.96
Lot batch = shdj090

source_name: AML 33


title: AML 71

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=650650LaserPower=4.664.64
Lot batch = shdj100

source_name: AML 71


title: AML 87

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=670630LaserPower=3.754.57
Lot batch = shco058

source_name: AML 87


title: AML 23

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=670650LaserPower=4.44.46
Lot batch = shdj089

source_name: AML 23


title: AML 55

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=670650LaserPower=4.694.65
Lot batch = shdj098

source_name: AML 55


title: AML 27

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=680590LaserPower=3.634.56
Lot batch = shco053

source_name: AML 27


title: AML 41

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=720650LaserPower=4.394.35
Lot batch = shdj097

source_name: AML 41


title: AML 84

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=760640LaserPower=4.424.59
Lot batch = shdj094

source_name: AML 84


title: AML 72

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=670650LaserPower=4.454.73
Lot batch = shdj093

source_name: AML 72


title: AML 59

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=740650LaserPower=4.424.39
Lot batch = shdj088

source_name: AML 59


title: AML 54

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=670650LaserPower=4.452.74
Lot batch = shdj087

source_name: AML 54


title: AML 115

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=690600LaserPower=3.644.57
Lot batch = shco051

source_name: AML 115


title: AML 37

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=710650LaserPower=4.362.99
Lot batch = shdj091

source_name: AML 37


title: AML 18

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=660650LaserPower=4.554.66
Lot batch = shdj086

source_name: AML 18


title: AML 66

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix Pro
Software version: 3.0.6.81
Scanning parameters: PMTVolts=780630LaserPower=3.584.73
Lot batch = shcz106

source_name: CRH

source_name: AML 66


title: AML 80

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix Pro
Software version: 3.0.6.81
Scanning parameters: PMTVolts=780630LaserPower=3.574.71
Lot batch = shcz105

source_name: AML 80


title: AML 111

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=740650LaserPower=3.94.1
Lot batch = shdj085

source_name: AML 111


title: AML 49

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=690600LaserPower=3.654.52
Lot batch = shco049

source_name: AML 49


title: AML 44

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=680650LaserPower=4.014.1
Lot batch = shcz090

source_name: AML 44


title: AML 75

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=680650LaserPower=4.494.56
Lot batch = shdj092

source_name: AML 75


title: AML 70

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=700640LaserPower=3.964.6
Lot batch = shcz086

source_name: AML 70


title: AML 116

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=680620LaserPower=3.664.57
Lot batch = shco048

source_name: AML 116


title: AML 42

description:
Category: Myeloid Leukemias
Subcategory: Acute Myeloid Leukemia
Experimenter: Lars Bullinger
Scanning Software: GenePix
Software version: Pro
Scanning parameters: PMTVolts=680650LaserPower=3.934.73
Lot batch = shdj081

source_name: AML 42