title: cyd3

description:
Category: Amino Acid metabolism
Subcategory: Tryptophan
30' vs 0' 15 ug/ml indole aa, minimal + 0.2% glu
Scanning Software: ScanAlyze
Software version: 2.44
Scanning parameters:
Lot batch = cyd3

source_name: 0' minimal + 0.2% glu, 25 ug total RNA

source_name: 30' 15 ug/ml indole aa, 25 ug total RNA


title: lexA 5' after UV vs. 0', MG1655

status: Public on Jul 30 2001

type: RNA

city: Stanford

last: Stanford Microarray Database

state: CA

address: 300 Pasteur Drive

department: Stanford University, School of Medicine

country: USA

institute: Stanford Microarray Database (SMD)

description:
Category: DNA metabolism
Subcategory: UV radiation
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = lexa_uv5

molecule: total RNA

organism: Escherichia coli

source_name: 0', before UV treatment, 25 ug total RNA, 2 ug pdN6

source_name: lexA 5 min after UV treatment, 25 ug total RNA, 2 ug pdN6


title: 5' vs 0' in minimal medium +0.2% glu

description:
Category: Amino Acid metabolism
Subcategory: Tryptophan
Scanning Software: ScanAlyze
Software version: 2.20
Scanning parameters:
Lot batch = cy_a_1

source_name: 0' in minimal medium +0.2% glu, 25 ug total RNA

source_name: 5' in minimal medium +0.2% glu, 25 ug total RNA


title: Tigr Genomic DNA vs Tigr/Astra reference

status: Public on Jul 25 2001

type: genomic

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3023

molecule: genomic DNA

organism: Helicobacter pylori

source_name: 1ug Tigr genomic DNA, 1ug Astra genomic DNA

source_name: 2ug Tigr genomic DNA


title: 87A genomic DNA vs. Tigr/Astra reference

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3008

source_name: 1 ug Tigr genomic DNA, 1 ug Astra genomic DNA

source_name: 2 ug 87A genomic DNA


title: 326 genomic DNA vs. Tigr/Astra reference III

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3012

source_name: 2 ug 326 genomic DNA


title: Hp1 genomic DNA vs. Tigr/Astra reference

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3004

source_name: 2 ug Hp1 genomic DNA


title: 326 genomic DNA vs. Tigr/Astra reference DNA

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3100

source_name: 1ug Tigr genomic DNA, 1 ug Astra genomic DNA


title: Tigr wizard prep genomic DNA vs TIGR/Astra reference

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3001

source_name: 1 ug TIGR genomic DNA, 1ug Astra genomic DNA

source_name: 2 ug TIGR genomic DNA, wizard prep


title: 326 genomic DNA vs Tigr/Astra reference

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3024

source_name: 2ug 326 genomic DNA


title: 326 genomic DNA vs. Tigr/Astra reference

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp2053


title: 314 genomic DNA vs. Tigr/Astra reference

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3003

source_name: 2 ug 314 genomic DNA


title: G39 genomic DNA vs. Tigr/Astra reference DNA

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3007

source_name: 2 ug G39 genomic DNA


title: CCUG genomic DNA vs. Tigr/Astra reference

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3006

source_name: 2 ug CCUG genomic DNA


title: CCUG genomic DNA vs. Tigr/Astra reference III

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3009


title: G39 genomic DNA vs. Tigr/Astra reference

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp2051


title: Sydney wizard prep genomic DNA vs TIGR/Astra reference

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3098

source_name: 1 ug tigr genomic DNA, 1ug Asgra genomic DNA

source_name: 2 ug sydney strain genomic DNA, wizard prep


title: 342S vs. TIGR/Astra ref. genomic DNA; amino-allyl labeling

description:
Category: Strain comparison
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp2041

source_name: 2 ug 342S genomic DNA


title: 292 genomic DNA vs Tigr/Astra reference

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3025

source_name: 2ug 292 genomic DNA


title: G50 genomic DNA vs. Tigr/Astra reference

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3002

source_name: 2 ug G50 genomic DNA


title: 292 genomic DNA vs TIGR/ASTRA reference

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3035

source_name: 1ug TIGR genomic DNA, 1ug Astra Genomic DNA

source_name: 2 ug 292genomic DNA, wizard prep


title: G27 genomic DNA vs. TIGR/Astra reference

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3044

source_name: 1ug tigr genomic DNA, 1ug Astra genomic DNA

source_name: 2ug G27 genomic DNA (wizard prep)


title: CCUG genomic DNA vs Tigr/Astra reference

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp2031

source_name: 1ug Tigr genomic DNA, 1ug Astra genomic DNA

source_name: 2ug CCUG genomic DNA


title: Hp1 vs. TIGR/Astra ref. genomic DNA; amino-allyl labeling

description:
Category: Strain comparison
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp2042

source_name: 2 ug Hp1 genomic DNA


title: G50 genomic DNA vs Tigr/Astra reference

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp2030

source_name: 2ug G50 genomic DNA


title: diauxic shift timecourse: 9.5 hr

status: Public on Feb 12 2002

description:
ScanAlyze version 2.41 scanning software was used.
Keywords = Starvation
Keywords = Diauxic shift
Lot batch = diauxicf2

organism: Saccharomyces cerevisiae

source_name: 0.14 OD 19.0g/L glucose

source_name: 0.46 OD 18.7g/L glucose


title: T2 vs. TIGR/Astra ref. genomic DNA; amino-allyl labeling

description:
Category: Strain comparison
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp2040

source_name: 2 ug T2 genomic DNA


title: G39 genomic DNA vs. Tigr/Astra reference DNA III

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3011

source_name: 1ug Tigr genomic DNA, 1 ug Astra genomic DNA

source_name: 2 ug G39 genomic DNA


title: Sydney strian genomic DNA vs astra/tigr ref

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.33
Scanning parameters:
Lot batch = hp2034

source_name: 1ug TIGR genomic DNA, 1ug Astra genomic DNA

source_name: 2 ug Sydney Genomic DNA (wizard prep)


title: lexA 10' after UV vs. 0', MG1655

description:
Category: DNA metabolism
Subcategory: UV radiation
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = lexa_uv10

source_name: 0', before UV treatment, 25 ug total RNA, 2 ug pdN6

source_name: lexA 10 min after UV treatment, 25 ug total RNA, 2 ug pdN6


title: 292 genomic DNA vs astra/tigr ref

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.33
Scanning parameters:
Lot batch = hp2028

source_name: 2 ug 292 Genomic DNA (wizard prep)


title: G50 genomic DNA vs. Tigr/Astra reference III

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3010

source_name: 1 ug Tigr genomic DNA, 1 ug Astra genomic DNA

source_name: 2 ug G50 genomic DNA


title: TIGR OD=0.5 Brucella Broth

description:
Category: Cell-cycle
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.33
Scanning parameters:
Lot batch = hp2002

source_name: TIGR ASTRA 50 50 2 ug total

source_name: TIGR cDNA


title: Tigr wizard prep vs. astr/tigr ref genomic DNA

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.33
Scanning parameters:
Lot batch = hp2027

source_name: 2 ug Tigr Genomic DNA (wizard prep)


title: 87A vs. TIGR/Astra ref. genomic DNA; amino-allyl labeling

description:
Category: Strain comparison
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp2039

source_name: 1ug Tigr genomic DNA, 1ug Astra genomic DNA

source_name: 2 ug 87A genomic DNA


title: 342S genomic DNA vs. Tigr/Astra reference

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3005

source_name: 2 ug 342S genomic DNA


title: REF-vjr (red, channel 2) vs N2 #1 L2 (green, channel 1)

status: Public on Jul 24 2001

description:
Category: germline
Subcategory: L2
Experimental details: synchronized wild type L2 mRNA (batch 1) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_11030

organism: Caenorhabditis elegans

source_name: N2 #1 L2 (green, channel 1)

source_name: REF-vjr (red, channel 2)


title: REF-vjr (red, channel 2) vs glp-4 #1 L2 (green, channel1)

description:
Category: germline
Subcategory: L2
Experimental details: synchronized glp-4(bn2) L2 mRNA (batch 1) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_11035

source_name: glp-4 #1 L3 (green, channel 1)


title: REF-vjr (red, channel 2) vs N2 #1 L3 (green, channel 1)

description:
Category: germline
Subcategory: L3
Experimental details: synchronized wild type L3 mRNA (batch 1) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_11038

source_name: N2 #1 L3 (green, channel 1)


title: REF-vjr (red, channel 2) vs N2 #3 L2 (green, channel 1)

description:
Category: germline
Subcategory: L2
Experimental details: synchronized wild type L2 mRNA (batch 3) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_11034

source_name: N2 #3 L2 (green, channel 1)


title: REF-vjr (red, channel 2) vs N2 #2 L2 (green, channel 1)

description:
Category: germline
Subcategory: L2
Experimental details: synchronized wild type L2 mRNA (batch 2) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_11033

source_name: N2 #2 L2 (green, channel 1)


title: 2 min Nov5 ug/ml, dnaCacrD 30 min after synchr start

description:
Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = nov5_2

source_name: dnaC fully replicated, 2 ug Say3AI, pdN6 RT

source_name: 2 min Nov5 ug/ml, 2 ug Say3AI, pdN6 RT


title: REF-vjr (red, channel 2) vs N2 #3 L4 (green, channel 1)

description:
Category: germline
Subcategory: L4
Experimental details: synchronized wild type L4 mRNA (batch 3) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_11001

source_name: N2 #3 L4 (green, channel 1)


title: REF-vjr (red, channel 2) vs bn2 #1 L4 (green, channel 1)

description:
Category: germline
Subcategory: L4
Experimental details: synchronized glp-4(bn2) L4 mRNA (batch 1) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_11006

source_name: bn2 #1 L4 (green, channel 1)


title: vjr mixed control (red, channel 2)  vs bn2-4 T3 (green, channel 1)

description:
Category: germline
Subcategory: L4
Experimental details: synchronized glp-4(bn2) L4 mRNA (batch 4) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10997

source_name: bn2-4 T3 (green, channel 1)

source_name: vjr mixed control (red, channel 2)


title: REF-vjr (red, channel 2) vs glp-4 #3 L2 (green, channel 1)

description:
Category: germline
Subcategory: L2
Experimental details: synchronized glp-4(bn2) L2 mRNA (batch 3) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_11037

source_name: glp-4 #3 L2 (green, channel 1)


title: REF-vjr (red, channel 2) vs bn2 #3 L4 (green, channel 1)

description:
Category: germline
Subcategory: L4
Experimental details: synchronized glp-4(bn2) L4 mRNA (batch 3) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_11003

source_name: bn2 #3 L4 (green, channel 1)


title: REF-vjr (red, channel 2) vs N2 #3 L3 (green, channel 1)

description:
Category: germline
Subcategory: L3
Experimental details: synchronized wild type L3 mRNA (batch 3) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_11000

source_name: N2 #3 L3 (green, channel 1)


title: REF-vjr (red, channel 2) vs bn2 #3 L3 (green, channel 1)

description:
Category: germline
Subcategory: L3
Experimental details: synchronized glp-4(bn2) L3 mRNA (batch 3) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_11002

source_name: bn2 #3 L3 (green, channel 1)


title: G27 genomic DNA vs astra/tigr ref

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.33
Scanning parameters:
Lot batch = hp2029

source_name: 1ug TIGR genomic DNA, 1ug Astra genomic DNA

source_name: 2 ug G27 Genomic DNA (wizard prep)


title: REF-vjr (red, channel 2) vs N2 #1 L4 (green, channel 1)

description:
Category: germline
Subcategory: L4
Experimental details: synchronized wild type L3 mRNA (batch 1) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_11005

source_name: N2 #1 L4 (green, channel 1)

source_name: REF-vjr (red, channel 2)


title: REF-vjr (red, channel 2) vs bn2 #1 L3 (green, channel 1)

description:
Category: germline
Subcategory: L3
Experimental details: synchronized glp-4(bn2) L3 mRNA (batch 1) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_11029

source_name: bn2 #1 L3 (green, channel 1)


title: vjr mixed control (red, channel 2)  vs bn2-2 T3 (green, channel 1)

description:
Category: germline
Subcategory: L4
Experimental details: synchronized glp-4(bn2) L4 mRNA (batch 2) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10993

source_name: bn2-2 T3 (green, channel 1)


title: vjr N2 mixed control (red, channel 2)  vs N2-4 T2 (green, channel 1)

description:
Category: germline
Subcategory: L3
Experimental details: synchronized wild type L3 mRNA (batch 4) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10994

source_name: N2-4 T2 (green, channel 1)

source_name: vjr N2 mixed control (red, channel 2)


title: vjr N2 mixed control (red, channel 2)  vs N2-2 T4 (green, channel 1)

description:
Category: germline
Subcategory: adult
Experimental details: synchronized wild type young adult mRNA (batch 2) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10986

source_name: N2-2 T4 (green, channel 1)


title: vjr mixed contol (red, channel 2)  vs bn2-4 T2 (green, channel 1)

description:
Category: germline
Subcategory: L3
Experimental details: synchronized glp-4(bn2) L3 mRNA (batch 4) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10996

source_name: bn2-4 T2 (green, channel 1)

source_name: vjr mixed contol (red, channel 2)


title: vjr N2 mixed control (red, channel 2)  vs bn2-2 T4 (green, channel 1)

description:
Category: germline
Subcategory: adult
Experimental details: synchronized glp-4(bn2) young adult mRNA (batch 2) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10988

source_name: bn2-2 T4 (green, channel 1)


title: REF-vjr (red, channel 2) vs glp-4 #2 and #4 L2 (green, channel 1)

description:
Category: germline
Subcategory: L2
Experimental details: synchronized glp-4(bn2) L2 mRNA (batches 2 and 4 combined) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_11036

source_name: glp-4 #2 and #4 L2 (green, channel 1)


title: circadian rhythm time at 12,0 (2)

status: Public on Jul 20 2001

description:
Category: Development
Subcategory: Rhythm
Scanning Software: ScanAlyze
Software version: 2.33
Scanning parameters:
Keywords = circadian rhythm
Lot batch = R12

organism: Arabidopsis thaliana

source_name: time at 12 hours

source_name: time at 0 hours


title: vjr mixed control (red, channel 2)  vs N2-4 T3 (green, channel 1)

description:
Category: germline
Subcategory: L4
Experimental details: synchronized wild type L34 mRNA (batch 4) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10995

source_name: N2-4 T3 (green, channel 1)

source_name: vjr mixed control (red, channel 2)


title: vjr N2 mixed control (red, channel 2)  vs bn2-4 T4 (green, channel 1)

description:
Category: germline
Subcategory: adult
Experimental details: synchronized glp-4(bn2) young adult mRNA (batch 4) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10989

source_name: bn2-4 T4 (green, channel 1)


title: circadian rhythm time at 0,24

description:
Category: Development
Subcategory: Rhythm
Scanning Software: ScanAlyze
Software version: 2.33
Scanning parameters:
Keywords = circadian rhythm
Lot batch = R7

source_name: time at 24 hours


title: circadian rhythm time at 18,0

description:
Category: Development
Subcategory: Rhythm
Scanning Software: ScanAlyze
Software version: 2.33
Scanning parameters:
Keywords = circadian rhythm
Lot batch = R3

source_name: time at 18 hours


title: circadian rhythm time at 0,12

description:
Category: Development
Subcategory: Rhythm
Scanning Software: ScanAlyze
Software version: 2.33
Scanning parameters:
Keywords = circadian rhythm
Lot batch = R6


title: vjr N2 mixed control (red, channel 2)  vs N2-3 T4 (green, channel 1)

description:
Category: germline
Subcategory: adult
Experimental details: synchronized wild type young adult mRNA (batch 3) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10983

source_name: N2-3 T4 (green, channel 1)


title: circadian rhythm time at 12,0

description:
Category: Development
Subcategory: Rhythm
Scanning Software: ScanAlyze
Software version: 2.33
Scanning parameters:
Keywords = circadian rhythm
Lot batch = R2


title: circadian rhythm time at 0,12 single

description:
Category: Development
Subcategory: Rhythm
Scanning Software: ScanAlyze
Software version: 2.44
Scanning parameters:
Keywords = circadian rhythm
Lot batch = R28


title: circadian rhythm time at 18,0 biological

description:
Category: Development
Subcategory: Rhythm
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Keywords = circadian rhythm
Lot batch = R21


title: vjr N2 mixed control (red, channel 2)  vs N2-4 T4 (green, channel 1)

description:
Category: germline
Subcategory: adult
Experimental details: synchronized wild type young adult mRNA (batch 4) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10987

source_name: N2-4 T4 (green, channel 1)


title: Renal cell carcinoma: rccc-1, tumor 1 (part 2 of 2)

status: Public on Jul 19 2001

city: Heidelberg

first: Wolfgang

last: Huber

address: Im Neuenheimer Feld 280

department: Molecular Genome Analysis

country: Germany

institute: German Cancer Research Center

description:
clinical.stage=I
grade.of.malignancy=2
type=clearcell
tumor.site=kidney
multiplefoci=TRUE
survival.months=16
died=FALSE
tumorsize.cm=6
sex=m
age=69
RNA=poly-A+
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice) and foreground/background ratio
Keywords = renal clear cell carcinoma
Keywords = kidney
Lot batch = batch=ReImage3_nov99 filter=3625254 reuse=2 date=11-Dec-1999

organism: Homo sapiens

source_name: renal clear cell carcinoma (primary tumor)


title: circadian rhythm time at 0,6 biological

description:
Category: Development
Subcategory: Rhythm
Scanning Software: ScanAlyze
Software version: 2.44
Scanning parameters:
Keywords = circadian rhythm
Lot batch = R24

source_name: time at 6 hours


title: vjr N2 mixed control (red, channel 2)  vs bn2-3 T4 (green, channel 1)

description:
Category: germline
Subcategory: adult
Experimental details: synchronized glp-4(bn2) young adult mRNA (batch 3) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10985

source_name: bn2-3 T4 (green, channel 1)

source_name: vjr N2 mixed control (red, channel 2)


title: vjr N2 mixed control (red, channel 2)  vs N2-2 T2 (green, channel 1)

description:
Category: germline
Subcategory: L3
Experimental details: synchronized wild type L3 mRNA (batch 2) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10990

source_name: N2-2 T2 (green, channel 1)


title: circadian rhythm time at 0,6 hours

description:
Category: Development
Subcategory: Rhythm
Scanning Software: ScanAlyze
Software version: 2.33
Scanning parameters:
Keywords = circadian rhythm
Lot batch = R1


title: circadian rhythm time at 0,12 biological

description:
Category: Development
Subcategory: Rhythm
Scanning Software: ScanAlyze
Software version: 2.44
Scanning parameters:
Keywords = circadian rhythm
Lot batch = R36


title: vjr N2 mixed control (red, channel 2)   vs bn2-1 T5 (green, channel 1)

description:
Category: germline
Subcategory: adult
Experimental details: synchronized glp-4(bn2) young adult mRNA (batch 1) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10984

source_name: bn2-1 T5 (green, channel 1)


title: vjr mixed contol (red, channel 2)  vs bn2-2 T2 (green, channel 1)

description:
Category: germline
Subcategory: L3
Experimental details: synchronized glp-4(bn2) L3 mRNA (batch 2) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10992

source_name: bn2-2 T2 (green, channel 1)

source_name: vjr mixed contol (red, channel 2)


title: 87A genomic DNA vs Tigr/Astra reference

description:
Category: Genomic DNA
Subcategory: Strain Comparison
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Lot batch = hp3026

source_name: 1ug Tigr genomic DNA, 1ug Astra genomic DNA

source_name: 2ug 87A genomic DNA


title: vjr mixed control (red, channel 2)  vs N2-2 T3 (green, channel 1)

description:
Category: germline
Subcategory: L4
Experimental details: synchronized wild type L4 mRNA (batch 2) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10991

source_name: N2-2 T3 (green, channel 1)