title: Parkinson's model voxel E1

description:
Voxel E1 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: Parkinson's model voxel E1


title: Wild type voxel C4

status: Public on Mar 29 2002

type: RNA

city: Los Angeles

first: Vanessa

middle: Marie

last: Brown

state: CA

address: 650 Charles E. Young Dr. South, CHS 23-151

department: Department of Molecular & Medical Pharmacology

country: USA

institute: UCLA

description:
Voxel C4 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

molecule: total RNA

organism: Mus musculus

source_name: normal whole brain

source_name: wild type voxel C4


title: Wild type voxel D3

description:
Voxel D3 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: wild type voxel D3


title: Wild type voxel E4

description:
Voxel E4 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: wild type voxel E4


title: Parkinson's model voxel E4

source_name: Parkinson's model voxel E4


title: Wild type voxel F2

description:
Voxel F2 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: wild type voxel F2


title: Wild type voxel D1

description:
Voxel D1 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: wild type voxel D1


title: Wild type voxel E3

description:
Voxel E3 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: wild type voxel E3


title: Wild type voxel E1

source_name: wild type voxel E1


title: Parkinson's model voxel E3

source_name: Parkinson's model voxel E3


title: Parkinson's model voxel D2

description:
Voxel D2 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: Parkinson's model voxel D2


title: Parkinson's model voxel E2

description:
Voxel E2 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: Parkinson's model voxel E2


title: Wild type voxel D2

source_name: wild type voxel D2


title: Wild type voxel F3

description:
Voxel F3 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: wild type voxel F3


title: Parkinson's model voxel G2

description:
Voxel G2 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: Parkinson's model voxel G2


title: Wild type voxel F4

description:
Voxel F4 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: wild type voxel F4


title: Parkinson's model voxel B4

description:
Voxel B4 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: Parkinson's model voxel B4


title: Parkinson's model voxel B2

description:
Voxel B2 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: normal whole brain

source_name: Parkinson's model voxel B2


title: Parkinson's model voxel B3

description:
Voxel B3 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: Parkinson's model voxel B3


title: Parkinson's model voxel C2

description:
Voxel C2 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: Parkinson's model voxel C2


title: Wild type voxel B4

source_name: wild type voxel B4


title: Parkinson's model voxel A4

description:
Voxel A4 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: Parkinson's model voxel A4


title: Wild type voxel B2

source_name: wild type voxel B2


title: Sporulation t7hrs

status: Public on Feb 12 2002

city: Stanford

last: Stanford Microarray Database

address: 300 Pasteur Drive

department: Stanford University, School of Medicine

institute: Stanford Microarray Database (SMD)

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Sporulation
Keywords = Transcription Factors
Lot batch = spo7

organism: Saccharomyces cerevisiae


title: Wild type voxel C2

source_name: wild type voxel C2


title: Wild type voxel C1

description:
Voxel C1 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: wild type voxel C1


title: Wild type voxel A4

source_name: wild type voxel A4


title: Wild type voxel B3

source_name: wild type voxel B3


title: Sporulation t11hrs

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Sporulation
Keywords = Transcription Factors
Lot batch = spo11


title: Parkinson's model voxel C1

source_name: Parkinson's model voxel C1


title: Wild type voxel B1

description:
Voxel B1 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: wild type voxel B1


title: Parkinson's model voxel B1

source_name: Parkinson's model voxel B1


title: Parkinson's model voxel C3

description:
Voxel C3 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: Parkinson's model voxel C3


title: cdc15 220 min

description:
ScanAlyze version unknown scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n105

source_name: Asynchromous

source_name: 220 minutes


title: Parkinson's model voxel A3

description:
Voxel A3 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: normal whole brain

source_name: Parkinson's model voxel A3


title: Sporulation t2hrs

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Sporulation
Keywords = Transcription Factors
Lot batch = spo2


title: Sporulation t5hrs

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Sporulation
Keywords = Transcription Factors
Lot batch = spo5


title: Wild type voxel A3

source_name: wild type voxel A3


title: swi1 minimal medium experiment 1

description:
swi1, minimal (a) FY2 vs. YPS1
ScanAlyze version unknown scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = 26swi1m

source_name: swi1 deletion (YPS1)

source_name: Wild-type (FY2)


title: Parkinson's model voxel A2

description:
Voxel A2 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: Parkinson's model voxel A2


title: Parkinson's model voxel A1

description:
Voxel A1 of mouse brain.
Voxelation is a novel technology designed to produce high throughput, three-dimensional imaging of gene expression patterns in the brain.  In these experiments, mouse brains were dissected into 40 voxels, or cubes, by cutting 10 serial coronal sections and transecting each coronal section into fourths. Using microarrays, the gene expression pattern of 9000 genes was acquired for both a normal and a pharmacological model of Parkinson's disease (PD) mouse brain.  The mice used in these experiments were C57BL/6J males 10-24 weeks in age.

source_name: Parkinson's model voxel A1


title: snf2 minimal medium experiment 1

description:
snf2, minimal (a) FY2 vs. FY31
ScanAlyze version unknown scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = 27swi2m

source_name: snf2 deletion (FY31)


title: Sporulation t9hrs

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Sporulation
Keywords = Transcription Factors
Lot batch = spo9


title: Sporulation t0

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Sporulation
Keywords = Transcription Factors
Lot batch = spo0


title: cdc15 080 min

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n106

source_name: Asynchronous

source_name: 80 minutes


title: Wild type voxel C3

source_name: wild type voxel C3


title: cdc15 240 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n101

source_name: asynchronous

source_name: 240 min


title: cdc15 200 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n104

source_name: 200 min


title: cdc15 230 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n100

source_name: 230 min


title: Elutriation2:Sample2:Time4.5hrs

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n81

source_name: Ref Pool


title: cdc15 160 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n110

source_name: 160 min


title: cdc15 180 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n103

source_name: 180 min


title: cdc15 120 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n108

source_name: 120 min


title: alpha factor release sample013

description:
'
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n40

source_name: asynchronous control


title: cdc15 270 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n30

source_name: 270 min


title: cdc15 140 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n109

source_name: 140 min


title: cdc15 250 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n32

source_name: 250 min


title: alpha factor release sample017

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n88


title: alpha factor release sample019

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n89


title: CLN3 induction 40 minutes

description:
ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = CLN3 - Yeast
Lot batch = y80n9a

source_name: CLN3 0

source_name: CLN3 40


title: Elutriation2:Sample2:Time5.0hrs

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n63


title: cdc15 100 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n107

source_name: 100 min


title: cdc15 160 min repeat

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n28


title: Elutriation2:Sample2:Time6.5hrs

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n84


title: Elutriation2:Sample2:Time3.5hrs

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n43


title: CLN3 induction 30 minutes

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Cell-cycle
Keywords = CLN3 - Yeast
Lot batch = y80n9bf

source_name: CLN3 T0

source_name: CLN3 T30


title: Sporulation t30min

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Sporulation
Keywords = Transcription Factors
Lot batch = spo30


title: cdc15 110 min

description:
ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n40

source_name: asynchronous

source_name: 110 min


title: Elutriation2:Sample2:Time4.0hrs

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n79


title: Elutriation2:Sample2:Time3.0hrs

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n77


title: Elutriation2:Sample2:Time2.5hrs

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n76


title: cdc 15 010 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n13

source_name: 010 min


title: cdc15 210 min

description:
ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n38

source_name: 210 min


title: Elutriation2:Sample2:Time2.0hrs

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n70

source_name: Ref Pool


title: Elutriation2:Sample2:Time1.5hrs

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n69


title: cdc15 130 min

description:
ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n36

source_name: 130 min


title: cdc15 290 min

description:
ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n29

source_name: Asynchronous Control

source_name: 290 min


title: alpha factor release sample022

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n51

source_name: asynchrnous control (prep3)


title: Elutriation2:Sample2:Time0.5hrs

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n58


title: cdc15 030 min

description:
ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n14

source_name: 030 min


title: alpha factor release sample018

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n102

source_name: asynchronous control (prep3)


title: alpha factor release sample029

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n103


title: cdc15 050 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n16

source_name: 050 min


title: Elutriation2:Sample2:Time5.5hrs

description:
ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n82


title: Elutriation2:Sample2:Time0.0hrs

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n61


title: cdc15 070 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n42

source_name: 070 min


title: Elutriation2:Sample2:Time1.0hrs

description:
ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n60


title: cdc15 150 min

description:
ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n34

source_name: 150 min


title: alpha factor release sample015

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n41

source_name: asynchronous control


title: DBYyap1- + 0.3 mM H2O2 (20 min)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11-21

source_name: time = 0 min

source_name: time = 20 min


title: alpha factor release sample027

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n100


title: Elutriation2:Sample2:Time6.0hrs

description:
ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n83


title: cdc15 090 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n41

source_name: asynchronous

source_name: 090 min


title: DBY7286 + 0.3 mM H2O2 (20 min)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11-20


title: alpha factor release sample021

description:
ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n90


title: alpha factor release sample016

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n101


title: heat shock 25 to 37, 20 minutes

description:
ScanAlyze version 2.24 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n119


title: cdc15 170 min

description:
ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n33

source_name: 170 min


title: NBW7 strain High-Pi vs. Low-Pi, exp.2

description:
NBW7 (MATa ade2 his3 leu2 trp1 ura3 pho3-1), a wildtype strain for the PHO-regulation study. YPAD-Pi is a phosphate-depleted YPAD medium (~0.15 mM Pi). YPAD+Pi was made by addition of 10 mM Pi (final) to YPAD-Pi. RNA samples were prepared from their logarithmic phase cultures (OD600 = 0.5). This data was converted from RANA database.
ScanAlyze version 2.44 scanning software was used.
Keywords = Phosphate
Keywords = Nutrient limitation
Lot batch = lowpho

source_name: Cy3-labeled cDNA from NBW7 mRNA in YPAD+Pi

source_name: Cy5-labeled cDNA from NBW7 mRNA in YPAD-Pi


title: heat shock 33 to 37, 20 minutes

description:
ScanAlyze version 2.24 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n117


title: heat shock 37 to 37, 20 minutes

description:
ScanAlyze version 2.24 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n116


title: heat shock 21 to 37, 20 minutes

description:
ScanAlyze version 2.24 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n121


title: alpha factor release sample014

description:
ScanAlyze version 2.41 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n98


title: alpha factor release sample025

description:
ScanAlyze version 2.41 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n97


title: alpha factor release sample020

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n32


title: PHO81c vs. wild type, exp.2

description:
NBW7 (MATa ade2 his3 leu2 trp1 ura3 pho3-1), a wildtype strain for the PHO-regulation study. NBD82-1 (MATa ade2 his3 leu2 trp1 ura3 pho3-1 PHO81c-1). PHO81c-1 is a dominant mutation allele on the PHO81 locus. [Ref., Ogawa et al., (1995) Mol Cell Biol 15:997-1004] RNA samples were prepared from their logarithmic phase cultures (OD600 = 0.5). This data was converted from RANA database.
ScanAlyze version 2.41 scanning software was used.
Keywords = Phosphate
Keywords = Nutrient limitation
Lot batch = pho812

source_name: Cy3-labeled cDNA from NBW7 mRNA in YPAD

source_name: Cy5-labeled cDNA from NOF1(PHO81c) mRNA in YPAD


title: alpha factor release sample028

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n94


title: Amino acid + adenine starvation 2 h

description:
Strain: DBY#7286 (Mata, ura3-52, GAL2) Growth media: SC Starvation media: YNB-AA + 2% glucose + 20 mg/L uracil (NO ADENINE!) Temperature: 30C Date cells harvested: Sept. 4, 1999 Date of hybridization: Sept. 21, 1999 RNA template: Total RNA, 30 ug Labeling primers: Anchored oligo dT only, 5 ug
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n045c

source_name: 2 h


title: heat shock 17 to 37, 20 minutes

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n122


title: heat shock 29 to 37, 20 minutes

description:
ScanAlyze version 2.24 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n118


title: Amino acid + adenine starvation 6 h

description:
Strain: DBY#7286 (Mata, ura3-52, GAL2) Growth media: SC Starvation media: YNB-AA + 2% glucose + 20 mg/L uracil (NO ADENINE!) Temperature: 30C Date cells harvested: Sept. 4, 1999 Date of hybridization: Sept. 21, 1999 RNA template: Total RNA, 30 ug Labeling primers: Anchored oligo dT only, 5 ug
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n047c

source_name: 6 h


title: heat shock 80 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n81

source_name: time zero

source_name: 80 min


title: PHO4c vs. wild type

description:
NBW7 (MATa ade2 his3 leu2 trp1 ura3 pho3-1), a wildtype strain for the PHO-regulation study. NBD82-1 (MATa ade2 his3 leu2 trp1 ura3 pho3-1 PHO4c-1). PHO4c-1 is a dominant mutation allele on the PHO4 locus. [Ref., Ogawa and Oshima (1990) Mol Cell Biol 10:2224-2236] RNA samples were prepared from their logarithmic phase cultures (OD600 = 0.5). This data was converted from RANA database.
ScanAlyze version 2.41 scanning software was used.
Keywords = Phosphate
Keywords = Nutrient limitation
Lot batch = pho4c

source_name: Cy5-labeled cDNA from NBD82-1(PHO4c) mRNA in YPAD


title: heat shock 20 min repeat

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n78

source_name: 20 min


title: NBW7 strain low-Pi vs. High-Pi, exp.1

description:
NBW7 (MATa ade2 his3 leu2 trp1 ura3 pho3-1), a wildtype strain for the PHO-regulation study. YPAD-Pi is a phosphate-depleted YPAD medium (~0.15 mM Pi). YPAD+Pi was made by addition of 10 mM Pi (final) to YPAD-Pi. RNA samples were prepared from their logarithmic phase cultures (OD600 = 0.5). This data was converted from RANA database.
ScanAlyze version 2.41 scanning software was used.
Keywords = Phosphate
Keywords = Nutrient limitation
Lot batch = nbw


title: DBY7286 Low-Pi vs. High-Pi

description:
DBY7286 (MATa ura3-52), a derivative from S288C. YPAD-Pi is a phosphate-depleted YPAD medium (~0.15 mM Pi). YPAD+Pi was made by addition of 10 mM Pi (final) to YPAD-Pi. RNA samples were prepared from their logarithmic phase cultures (OD600 = 0.5). This data was converted from RANA database.
ScanAlyze version 2.41 scanning software was used.
Keywords = Phosphate
Keywords = Nutrient limitation
Lot batch = dby

source_name: Cy3-labeled cDNA from DBY7286 mRNA in YPAD+Pi

source_name: Cy5-labeled cDNA from DBY7286 mRNA in YPAD-Pi


title: Amino acid + adenine starvation 0.5 h

description:
Strain: DBY#7286 (Mata, ura3-52, GAL2) Growth media: SC Starvation media: YNB-AA + 2% glucose + 20 mg/L uracil (NO ADENINE!) Temperature: 30C Date cells harvested: Sept. 4, 1999 Date of hybridization: Sept. 21, 1999 RNA template: Total RNA, 30 ug Labeling primers: Anchored oligo dT only, 5 ug
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n043c


title: pho85 delete vs. wild type

description:
NBW7 (MATa ade2 his3 leu2 trp1 ura3 pho3-1), a wildtype strain for the PHO-regulation study. NBD85A-1 (MATa ade2 his3 leu2 trp1 ura3 pho3-1 pho85::ADE2), a pho85 disruptant from NBW7. RNA samples were prepared from their logarithmic phase cultures (OD600 = 0.5). This data was converted from RANA database.
ScanAlyze version 2.41 scanning software was used.
Keywords = Phosphate
Keywords = Nutrient limitation
Lot batch = pho85

source_name: Cy5-labeled cDNA from NBD85A-1(pho85) mRNA in YPAD


title: heat shock 40 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n79

source_name: 40 min


title: heat shock 60 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n80

source_name: 60 min


title: heat shock 15 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n65

source_name: 15 min


title: alpha factor release sample023

description:
ScanAlyze version 2.41 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n96

source_name: asynchronous control


title: PHO81c vs. wild type, exp.1

description:
NBW7 (MATa ade2 his3 leu2 trp1 ura3 pho3-1), a wildtype strain for the PHO-regulation study. NBD82-1 (MATa ade2 his3 leu2 trp1 ura3 pho3-1 PHO81c-1). PHO81c-1 is a dominant mutation allele on the PHO81 locus. [Ref., Ogawa et al., (1995) Mol Cell Biol 15:997-1004] RNA samples were prepared from their logarithmic phase cultures (OD600 = 0.5). This data was converted from RANA database.
ScanAlyze version 2.41 scanning software was used.
Keywords = Phosphate
Keywords = Nutrient limitation
Lot batch = pho81


title: YPD_2_d_30C

description:
Experiment: YPD stationary phase (30C) RNA: Total Temperature: 30C Media: YP + glucose(2%) + uracil(20 mg/L)
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n040c


title: alpha factor release sample030

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n72


title: 100 microM CuSO4 30 min (B)

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Transcription
Keywords = Cell-cycle factors
Lot batch = f84cup

source_name: CM66J low Cu++

source_name: CM66J 100 microM CuSO4 30 min


title: heat shock 20 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n66


title: cdc15 190 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n39

source_name: asynchronous

source_name: 190 min


title: pho80 mutant vs wild type

description:
NBW7 (MATa ade2 his3 leu2 trp1 ura3 pho3-1), a wildtype strain for the PHO-regulation study. NBD80-1 (MATa ade2 his3 leu2 trp1 ura3 pho3-1 pho80::HIS3), a pho80 disruptant from NBW7. RNA samples were prepared from their logarithmic phase cultures (OD600 = 0.5). This data was converted from RANA database.
ScanAlyze version 2.41 scanning software was used.
Keywords = Phosphate
Keywords = Nutrient limitation
Lot batch = pho80

source_name: Cy3-labeled cDNA from NBW7 mRNA in YPAD

source_name: Cy5-labeled cDNA from NBD80-1(pho80) mRNA in YPAD


title: Amino acid + adenine starvation 4 h

description:
Strain: DBY#7286 (Mata, ura3-52, GAL2) Growth media: SC Starvation media: YNB-AA + 2% glucose + 20 mg/L uracil (NO ADENINE!) Temperature: 30C Date cells harvested: Sept. 4, 1999 Date of hybridization: Sept. 21, 1999 RNA template: Total RNA, 30 ug Labeling primers: Anchored oligo dT only, 5 ug
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n046c

source_name: 4 h


title: YPD_1_d_30C

description:
Experiment: YPD stationary phase (30C) RNA: Total Temperature: 30C Media: YP + glucose(2%) + uracil(20 mg/L)
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n039c


title: YPD_12_h_30C

description:
Experiment: YPD stationary phase (30C) RNA: Total Temperature: 30C Media: YP + glucose(2%) + uracil(20 mg/L)
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n038c


title: Amino acid + adenine starvation 1 h

description:
Strain: DBY#7286 (Mata, ura3-52, GAL2) Growth media: SC Starvation media: YNB-AA + 2% glucose + 20 mg/L uracil (NO ADENINE!) Temperature: 30C Date cells harvested: Sept. 4, 1999 Date of hybridization: Sept. 21, 1999 RNA template: Total RNA, 30 ug Labeling primers: Anchored oligo dT only, 5 ug
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n044c

source_name: 1 h


title: YPD_10_h_30C

description:
Experiment: YPD stationary phase (30C) RNA: Total Temperature: 30C Media: YP + glucose(2%) + uracil(20 mg/L)
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n037c


title: MAC1-up (B)

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Transcription
Keywords = Cell-cycle factors
Lot batch = f74a3d

source_name: CM66J#2 (Mac1-H279Q) low Cu++


title: 100 microM CuSO4 30 min

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Transcription
Keywords = Cell-cycle factors
Lot batch = f73a2c


title: heat shock 10 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n64

source_name: time zero

source_name: 10 min


title: YPD_3_d_30C

description:
Experiment: YPD stationary phase (30C) RNA: Total Temperature: 30C Media: YP + glucose(2%) + uracil(20 mg/L)
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n041c


title: YPD_8_h_30C

description:
Experiment: YPD stationary phase (30C) RNA: Total Temperature: 30C Media: YP + glucose(2%) + uracil(20 mg/L)
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n036c


title: YPD_5_d_30C

description:
Experiment: YPD stationary phase (30C) RNA: Total Temperature: 30C Media: YP + glucose(2%) + uracil(20 mg/L)
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n042c


title: 100 microM BCS 30 min

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Transcription
Keywords = Cell-cycle factors
Lot batch = f72a1b

source_name: CM66J 100 microM BCS 30 min


title: YPD_4_h_30C

description:
Experiment: YPD stationary phase (30C) RNA: Total Temperature: 30C Media: YP + glucose(2%) + uracil(20 mg/L)
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n034c


title: heat shock 05 min

description:
ScanAlyze version 2.03 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n63

source_name: 05 min


title: dtt 240 min

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n074

source_name: pool

source_name: dtt 240


title: dtt 480 min

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n075

source_name: dtt 480


title: 100 microM BCS 60 min

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Transcription
Keywords = Cell-cycle factors
Lot batch = f79cup

source_name: CM66J 100 microM BCS 60 min


title: dtt 120 min

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n073

source_name: dtt 120


title: YPD_6_h_30C

description:
Experiment: YPD stationary phase (30C) RNA: Total Temperature: 30C Media: YP + glucose(2%) + uracil(20 mg/L)
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n035c


title: swi1 rich medium experiment 3

description:
swi1, YPD (d), FY2 vs. YPS1
ScanAlyze version 2.24 scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = f67swi1

source_name: swi1 deletion (YPS1)

source_name: Wild-type (FY2)


title: dtt 060 min

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n072

source_name: dtt 060


title: dtt 030 min

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n071

source_name: dtt 030


title: MAC1-up (C)

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Transcription
Keywords = Cell-cycle factors
Lot batch = f81cup

source_name: CM66J low Cu++


title: dtt 000 min

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n069

source_name: dtt 000


title: dtt 015 min

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n070

source_name: dtt 015


title: steady state 36 dec C

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n092

source_name: 36 deg C


title: steady state 17 dec C

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n094

source_name: 17 deg C


title: steady state 29 dec C

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n090

source_name: 29 deg C


title: steady state 33 dec C

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n091

source_name: 33 deg C


title: steady state 25 dec C

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n089

source_name: 25 deg C


title: steady state 21 dec C

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n088

source_name: pool

source_name: 21 deg C


title: steady state 15 dec C

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n086

source_name: 15 deg C


title: snf2 rich medium experiment 2

description:
snf2, YPD (c), FY2 vs. FY31
ScanAlyze version 2.24 scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = f64snf2

source_name: snf2 deletion (FY31)


title: swi1 rich medium experiment 2

description:
swi1, YPD (c), FY2 vs. YPS1
ScanAlyze version 2.24 scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = f65swi1


title: Heat Shock 060 minutes

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n085

source_name: Reference Pool

source_name: Heat Shock 060 minutes


title: CGH_Albertson_GM13330-010220

type: genomic

city: San Francisco

first: Donna

middle: G

last: Albertson

department: Comprehensive Cancer Center

institute: University of California San Francisco

description:
Coriell Cell Repositories cell line GM13330.
Fibroblast cell line derived from a 2 day old male with absent thumbs, heart anomalies, and other malformations. Culture established from a muscle biopsy; passage 4 at CCR.
Chromosomal abnormalities are present.
Karyotype is 46,XY,-4,+der(4)t(1;4)(4pter> 4q35::1q25>1qter)mat

molecule: genomic DNA

organism: Homo sapiens

source_name: Cell line GM13330

tag: Coriell cell line repository identifier

source_name: normal male reference genomic DNA


title: snf2 minimal medium experiment 2

description:
snf2, minimal (c), FY2 vs. FY31
ScanAlyze version 2.24 scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = f60snf2

source_name: Wild-type (FY2)


title: Heat Shock 015 minutes

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n083

source_name: Heat Shock 015 minutes


title: snf2 minimal medium experiment 3

description:
snf2, minimal (d), FY2 vs. FY31
ScanAlyze version 2.24 scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = f62snf2


title: CGH_Albertson_GM13031-010117

description:
Coriell Cell Repositories cell line GM13031.
Lymphoblast cell line derived from a 4 year old male with homeobox deletion.
Chromosome abnormalities are present.
Karyotype is 46,XY,del(17)(pter>q21.3::q23>qter)

source_name: Cell line GM13031


title: snf2 rich medium experiment 3

description:
snf2, YPD (d), FY2 vs. FY31
ScanAlyze version 2.24 scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = f66snf2


title: Heat Shock 005 minutes

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n082

source_name: Heat Shock 005 minutes


title: steady state 36 dec C: y14n095

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n095

source_name: 36 deg C


title: Heat Shock 030inutes

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n084

source_name: Heat Shock 030inutes


title: swi1 minimal medium experiment 3

description:
swi1, minimal (d), FY2 vs. YPS1
ScanAlyze version 2.24 scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = f63swi1

source_name: swi1 deletion (YPS1)


title: Heat Shock 000 minutes (series 3)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n081

source_name: Heat Shock 000 minutes


title: 33C no sorbitol 5 min

description:
33C no sorbitol 5 min
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-134

source_name: 29C + 1M sorbitol

source_name: 33C no sorbitol 5 min


title: swi1 minimal medium experiment 2

description:
swi1, minimal (c), FY2 vs. YPS1
ScanAlyze version 2.24 scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = f61swi1


title: 33C no sorbitol 30 min

description:
33C no sorbitol 30 min
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-71

source_name: 33C no sorbitol 30 min


title: 1M sorbitol - 30 min

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12-4

source_name: time = 0 min

source_name: time = 30 min


title: CGH_Albertson_GM07081-010117

description:
Coriell Cell Repositories cell line GM07081.
Fibroblast cell line derived from a 3 month old male with microcephaly, hypertelorism, cleft palate and gingiva, left club foot, large fontanel, congenital dislocation of shoulders and hips, congenital heart disease, failure to thrive, and developmental delay.
Chromosome abnormalities are present.
Karyotype is 46,XY,-15,+der(7)t(7;15)(7pter> 7q11.2::15q11.2>15qter)mat

source_name: Cell line GM07081


title: CGH_Albertson_GM10315-010117

description:
Coriell Cell Repositories cell line GM10315.
Fibroblast cell line derived from a 12 gestational week female fetus.
Trisomy 22 is present.
Karyotype is 47,XX,+22 with 8% of cells show random chromosome loss.

source_name: Cell line GM10315


title: 25C -- 90 min

description:
25C - 90 min
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-62


title: CGH_Albertson_GM03563-010220

description:
Coriell Cell Repositories cell line GM03563.
Fibroblast cell line derived from a 1 month old male with multiple congenital anomalies.
Chromosomal abnormalities are present.
Karyotype is 46,XY,-9,+der(9)t(3;9)(9qter>9p24:: 3q12>3qter)mat

source_name: Cell line GM03563


title: CGH_Albertson_GM07408-010117

description:
Coriell Cell Repositories cell line GM07408.
Chorionic villus cell line derived from a 12 gestational week fetus.
Trisomy 20 is present.
Karyotype is 7,XX,+20 with 10% of cells showing random chromosome loss.

source_name: Cell line GMGM07408

source_name: normal male reference genomic DNA


title: CGH_Albertson_GM05296-001218

description:
Coriell Cell Repositories cell line GM05296.
Fibroblast cell line derived from a 1 month old female with multiple congenital malformations, dysmorphic features, intrauterine growth retardation, heart murmur, cleft palate, equinovarus deformity, microcephaly, coloboma of right iris, clinodactyly, reduced RBC catalase activity, and 1 copy of catalase gene.
Chromosome abnormalities are present.
Karyotype is 46,XX,-11,+der(11)inv ins(11;10)(11pter> 11p13::10q21>10q24::11p13>11qter)mat

source_name: Cell line GM05296


title: CGH_Albertson_GM04435-001218

description:
Coriell Cell Repositories cell line GM04435.
Fibroblast cell line derived from the amnion of a 19 gestational week male fetus.
Trisomies 16 and 21 are present.
Karyotype is 48,XY,+16,+21

source_name: Cell line GM04435


title: 1M sorbitol - 15 min

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12-3

source_name: time = 15 min


title: 25C -- 60 min

description:
25C - 60 min
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-60


title: 1M sorbitol - 45 min (* centrifugation problem)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12-5

source_name: time = 45 min


title: SWI4 3xHA IP with anti-HA, alpha-factor treated cells, G-array

description:
Same as i16swi4, on ORF + intergenic array
ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = g118swi4

source_name: amplified genomic DNA

source_name: SWI4 3xHA IP with anti-HA, plus alpha-factor


title: SWI4 IP with anti-Swi4, benomyl treated cells (#30), G-array

description:
Same as i54swi4, on ORF + intergenic array
ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = g104swi4

source_name: swi4 deletion

source_name: WT


title: SWI4 IP with anti-Swi4, alpha-factor treated cells (#30), G-array

description:
Same as i26swi4, on ORF + intergenic array
ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = g103swi4


title: CGH_Albertson_GM02948-010220

description:
Coriell Cell Repositories cell line GM02948.
Fibroblast  cell line derived from a male with microcephaly, cebocephaly, microphthalmia, and polydactyly.
Trisomy 13 is present.
Karyotype is 47,XY,+13

source_name: Cell line GM02948


title: 25C -- 45 min

description:
25C - 45 min
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-59


title: CGH_Albertson_GM03134-001218

description:
Coriell Cell Repositories cell line GM03134.
Fibroblast cell line derived from a 3 month old male with multiple congenital anomalies.
Chromosomal abnormalities are present.
Karyotype is 46,XY,del(8)(pter>q13::q22>qter)

source_name: Cell line GM03134


title: SWI4 IP with anti-HA, alpha-factor treated cells, G-array

description:
Same as i22swi4, on ORF + intergenic array
ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = g100swi4

source_name: SWI4 IP with anti-HA, plus alpha-factor


title: constant 0.32 mM H2O2 (120 min) redo

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-43

source_name: time = 0 min

source_name: time = 120 min


title: constant 0.32 mM H2O2 (100 min) redo

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-42

source_name: time = 100 min


title: YP glucose vs reference pool

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12n110

source_name: pool

source_name: glucose


title: 25C -- 15 min

description:
25C - 15 min
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-57


title: YP fructose vs reference pool

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12n114

source_name: fructose


title: 25C -- 30 min

description:
25C - 30 min
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-58


title: YP galactose vs reference pool

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12n111

source_name: galactose


title: CGH_Albertson_GM01750-001218

description:
Coriell Cell Repositories cell line GM01750.
Fibroblast  cell line derived from a 2 year old male.  Three first cousins have the same partial trisomy 14; growth retardation, facial dysplasia, and developmental delay; MYH6 and MYH7 gene probes reveal 3 copies of cardiac alpha- and beta-myosin heavy chain genes.
Chromosomal abnormalities are present.
Karyotype is 47,XY,+der(14)t(9;14)(14pter>14q21:: 9p24>9pter)mat

source_name: Cell line GM01750

source_name: normal male reference genomic DNA


title: CGH_Albertson_GM03576-001218

description:
Coriell Cell Repositories cell line GM03576.
Fibroblast cell line derived from a 13 gestational week male fetus.
Trisomies 2 and 21 are present.
Karyotype is 48,XY,+2,+21

source_name: Cell line GM03576


title: CGH_Albertson_GM01535-001218

description:
Coriell Cell Repositories cell line GM01535.
Fibroblast cell line derived from a 16 year old female. Chromosomal abnormalities are present.
Karyotype is 46,XX,-12,+der(12)t(5;12)(12pter> 12q24::5q33>5qter)mat

source_name: Cell line GM01218


title: YP ethanol vs reference pool

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12n116

source_name: ethanol


title: YP sucrose vs reference pool

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12n115

source_name: sucrose


title: constant 0.32 mM H2O2 (10 min) redo

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-40

source_name: time = 10 min


title: 1M sorbitol - 5 min

description:
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12-2

source_name: time = 5 min


title: CGH_Albertson_GM01524-010220

description:
Coriell Cell Repositories cell line GM01524.
Fibroblast cell line derived from a 19 year old male with growth and mental retardation and peculiar facies.
Chromosomal abnormalities are present.
Karyotype is 46,XY,-5,+der(5)ins(5;6)(5pter>5q33:: 6q15>6q25::5q33>5qter)mat

source_name: Cell line GMM01524


title: constant 0.32 mM H2O2 (160 min) redo

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-44

source_name: time = 160 min


title: constant 0.32 mM H2O2 (80 min) redo

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-45

source_name: time = 0 min

source_name: time = 80 min


title: CGH_Albertson_GM00143-010220

description:
Coriell Cell Repositories cell line http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM00143
Fibroblast cell line derived from a 3 month old female.  Trisomy 18 is present.
Karyotype is 47,XX,+18

source_name: Cell line GM00143


title: 29C +1M sorbitol to 33C + 1M sorbitol - 30 min

description:
temperature shift in the presence of sorbitol
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-115

source_name: time = 0 at 29C + 1M sorbitol

source_name: time = 90 mintues after shift to 33C + 1M sorbitol


title: constant 0.32 mM H2O2 (60 min) redo

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-14

source_name: time = 60 min


title: 1M sorbitol - 60 min

description:
ScanAlyze version 2.05 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12-6


title: 29C +1M sorbitol to 33C + 1M sorbitol - 15 min

description:
temperature shift in the presence of sorbitol
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-113

source_name: time = 5 mintues after shift to 33C + 1M sorbitol


title: 29C +1M sorbitol to 33C + 1M sorbitol - 5 min

description:
temperature shift in the presence of sorbitol
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-114

source_name: time = 15 mintues after shift to 33C + 1M sorbitol


title: constant 0.32 mM H2O2 (30 min) redo

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-12

source_name: time = 30 min


title: 29C to 33C -30 min

description:
temperature shfit
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-111

source_name: time = 0 at 29C

source_name: time = 90 mintues after shift to 33C


title: constant 0.32 mM H2O2 (50 min) redo

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-13

source_name: time = 50 min


title: YP raffinose vs reference pool

description:
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12n112

source_name: pool

source_name: raffinose


title: 1M sorbitol - 90 min

description:
ScanAlyze version 2.05 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12-7

source_name: time = 90 min


title: 29C to 33C - 90 min

description:
adapted levels at 33C vs. 29C
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-112

source_name: time = 30 mintues after shift to 33C


title: 33C + 1M sorbitol vs. 29C - adapted

description:
temperature shift + hypo-osmotic shock
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-135

source_name: time = 15 minutes after shift ot 33C NO SORBITOL


title: constant 0.32 mM H2O2 (20 min) redo

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-11

source_name: time = 0 min

source_name: time = 20 min


title: Nitrogen Depletion 2 h

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a29

source_name: 0 h

source_name: 2 h


title: 1.5 mM diamide (90 min)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13-95


title: 1 mM Menadione (105 min) redo

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-8

source_name: time = 105 min


title: Nitrogen Depletion 1 h

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a28

source_name: 1 h


title: 29C to 33C - 15 min

description:
temperature shfit
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-110

source_name: time = 15 mintues after shift to 33C


title: 1 mM Menadione (80 min) redo

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-7

source_name: time = 80 min


title: 1.5 mM diamide (60 min)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13-94

source_name: time = 60 min


title: 29C to 33C - 5 min

description:
temperature shfit
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-109

source_name: time = 0 at 29C

source_name: time = 5 mintues after shift to 33C


title: Hypo-osmotic shock - 60 minutes

description:
Hypo-osmotic shock
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-107

source_name: time = 0 in 1M sorbitol

source_name: time = 60 minutes after shift to YPD


title: Nitrogen Depletion 2 d

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a34

source_name: 0 d

source_name: 2 d


title: Nitrogen Depletion 3 d

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a35

source_name: 3 d


title: Hypo-osmotic shock - 45 minutes

description:
Hypo-osmotic shock
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-106

source_name: time = 45 minutes after shift to YPD


title: 1.5 mM diamide (50 min)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13-93

source_name: time = 0 min

source_name: time = 50 min


title: 1 mM Menadione (10 min)redo

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-54

source_name: time = 10 min


title: 1mM Menadione (40 min) redo

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-4

source_name: time = 40 min


title: Nitrogen Depletion 30 min.

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a27

source_name: 0 min.

source_name: 30 min.


title: 1 mM Menadione (120 min)redo

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-32

source_name: time = 120 min


title: Nitrogen Depletion 1 d

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a33

source_name: 1 d


title: Hypo-osmotic shock -30 minutes

description:
Hypo-osmotic shock
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-105

source_name: time = 30 minutes after shift to YPD


title: 1.5 mM diamide (30 min)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13-91

source_name: time = 30 min


title: Hypo-osmotic shock -15 minutes

description:
cells adapted to 37C shifted to 25C in YPD
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-104

source_name: time = 15 minutes after shift to YPD


title: Nitrogen Depletion 12 h

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a32

source_name: 0 h


title: 1 mM Menadione (50 min)redo

description:
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-5


title: 1.5 mM diamide (10 min)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13-89

source_name: time = 5min


title: 1 mM Menadione (30 min) redo

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-3


title: Nitrogen Depletion 4 h

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a30

source_name: 4 h


title: Nitrogen Depletion 8 h

description:
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a31

source_name: 8 h


title: Hypo-osmotic shock - 5 min

description:
cells adapted to growht in YPD + 1M sorbitol - shifted to YPD - 5 min
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-103

source_name: time = 0 (in 1M sorbitol)

source_name: time = 5 min after shift to YPD


title: YPD 13 d (25C)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a81


title: 37 deg growth

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13n127

source_name: 33 deg

source_name: 37 deg


title: 1 mM Menadione (20 min) redo

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-2

source_name: time = 0 min

source_name: time = 20 min


title: YPD 1 d (25C)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a76


title: 17 deg growth

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13n123

source_name: 17 deg


title: YPD 2 d (25C)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a77

source_name: 2 d


title: YPD 5 d (25C)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a79

source_name: 5 d


title: SWI4 IP with anti-HA, unsynchronized cells

description:
ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = i20swi4

source_name: amplified genomic DNA

source_name: SWI4, IP with anti-HA


title: 1 mM Menadione (160 min) redo

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y9-33

source_name: time = 160 min


title: SWI6 IP with anti-Swi6, unsynchronized cells (#A38)

description:
ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = i71swi6

source_name: swi6 deletion

source_name: WT


title: 25 deg growth

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13n125

source_name: 25 deg


title: 21 deg growth

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13n124

source_name: 21 deg


title: YPD 7 d (25C)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a80

source_name: 7 d


title: 29 deg growth

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13n126

source_name: 29 deg


title: YPD 3 d (25C)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a78

source_name: 3 d


title: 1.5 mM diamide (5 min)

description:
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13-88

source_name: time = 5min


title: SWI6 IP with anti-Swi6, unsynchronized cells (#A38), genomic reference

description:
ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = i74swi6

source_name: SWI6 IP


title: 2.5mM DTT 180 min

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13n020

source_name: time zero

source_name: 180 min


title: YPD 12 h (25C)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a75


title: 2.5mM DTT 090 min

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13n018

source_name: 090 min


title: 2.5mM DTT 120 min

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13n019

source_name: 120 min


title: 2.5mM DTT 060 min

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13n017

source_name: 060 min


title: YPD 8 h (25C)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a74

source_name: 8 h


title: SWI4 IP with anti-Swi4, benomyl treated cells (#30)

description:
ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = i54swi4

source_name: swi4 deletion


title: diauxic shift timecourse: 20.5 hr

description:
ScanAlyze version 2.41 scanning software was used.
Keywords = Starvation
Keywords = Diauxic shift
Lot batch = diauxicf7

source_name: 0.14 OD 19.0g/L glucose

source_name: 7.3 OD 0 g/L glucose


title: SWI4 IP with anti-Swi4, unsynchronized cells (#30)

description:
ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = i15swi4

source_name: WT


title: 2.5mM DTT 045 min

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13n010

source_name: 045 min


title: SWI4 3xHA IP with anti-HA, benomyl treated cells

description:
ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = i17swi4

source_name: amplified genomic DNA

source_name: SWI4 3xHA IP with anti-HA, plus benomyl


title: diauxic shift timecourse: 13.5 hr

description:
ScanAlyze version 2.41 scanning software was used.
Keywords = Starvation
Keywords = Diauxic shift
Lot batch = diauxicf4

source_name: 1.8 OD 14.0g/L glucose


title: YPD 4 h (25C)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a73

source_name: 4 h


title: diauxic shift timecourse: 11.5 hr

description:
ScanAlyze version 2.41 scanning software was used.
Keywords = Starvation
Keywords = Diauxic shift
Lot batch = diauxicf3

source_name: 0.80 OD 17.6g/L glucose


title: YPD 2 h (25C)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a72

source_name: 2 h


title: 2.5mM DTT 030 min

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13n009

source_name: time zero

source_name: 030 min


title: SWI4 3xHA IP with anti-HA, unsynchronized cells

description:
ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = i21swi4


title: diauxic shift timecourse: 15.5 hr

description:
ScanAlyze version 2.41 scanning software was used.
Keywords = Starvation
Keywords = Diauxic shift
Lot batch = diauxicf5

source_name: 3.7 OD 7.5g/L glucose


title: SWI4 IP with anti-Swi4, unsynchronized cells (#28)

description:
ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = i14swi4


title: SWI4 IP with anti-Swi4, alpha-factor treated cells (#30)

description:
ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = i26swi4


title: SWI4 IP with anti-HA, alpha-factor treated cells

description:
ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = i22swi4

source_name: SWI4 IP with anti-HA, plus alpha-factor


title: 2.5mM DTT 015 min

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13n008

source_name: 015 min


title: 2.5mM DTT 005 min

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13n007

source_name: 005 min


title: 1.5 mM diamide (20 min)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13-90

source_name: time = 0 min

source_name: time = 20 min


title: 1005 fork-blocking strain induced for Tus: fork5_3

status: Public on Jul 30 2001

description:
Category: DNA metabolism
Subcategory: Replication
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
Scanning Software: unknown
Software version: unknown
Scanning parameters:
Lot batch = fork5_3

organism: Escherichia coli

source_name: 1005, LB + 0.2% glucose (tus repressed)

source_name: 1005, LB + 0.4% arabinose, 3.5 hr (tus induced)


title: diauxic shift timecourse: 0 hr

description:
ScanAlyze version 2.41 scanning software was used.
Keywords = Starvation
Keywords = Diauxic shift
Lot batch = diauxicf1

source_name: 0.14 OD 19g/L glucose


title: 60' vs. 0', 50 ug/ml tryptophan, minimal +02% glu

description:
Category: Amino Acid metabolism
Subcategory: Tryptophan
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
Scanning Software: unknown
Software version: unknown
Scanning parameters:
Lot batch = cyb4

source_name: 0' minimal +02% glu, 25 ug total RNA

source_name: 60' 50 ug/ml tryptophan, minimal +02% glu, 25 ug total RNA


title: 60'+50ug/ml Trp vs 0' in min med +0.2% glu

description:
Category: Amino Acid metabolism
Subcategory: Tryptophan
Scanning Software: ScanAlyze
Software version: 2.20
Scanning parameters:
Lot batch = cy_b_4

source_name: 0' in min med +0.2% glu, 25ug total RNA

source_name: 60' in min med +0.2% glu+50ug/ml Trp,25ug tot RNA


title: diauxic shift timecourse: 18.5 hr

description:
ScanAlyze version 2.41 scanning software was used.
Keywords = Starvation
Keywords = Diauxic shift
Lot batch = diauxicf6

source_name: 0.14 OD 19.0g/L glucose

source_name: 6.9 OD 0.2g/L glucose


title: SWI4 3xHA IP with anti-HA, alpha-factor treated cells

description:
ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = i16swi4

source_name: amplified genomic DNA

source_name: SWI4 3xHA IP with anti-HA, plus alpha-factor


title: 1005 fork-blocking strain induced for Tus: fork5_2

description:
Category: DNA metabolism
Subcategory: Replication
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
Scanning Software: unknown
Software version: unknown
Scanning parameters:
Lot batch = fork5_2

source_name: 1005, LB + 0.4% arabinose, 2.5 hr (tus induced)


title: 20 min Nov500 ug/ml, dnaCacrD 30 min after synchr start

description:
Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.44
Scanning parameters:
Lot batch = nov500_20

source_name: dnaC fully replicated, 2 ug Say3AI, pdN6 RT

source_name: 20 min Nov500 ug/ml, 2 ug Say3AI, pdN6 RT


title: 30'+50ug/ml Trp vs 0' in min med +0.2% glu

description:
Category: Amino Acid metabolism
Subcategory: Tryptophan
Scanning Software: ScanAlyze
Software version: 2.20
Scanning parameters:
Lot batch = cy_b_3

source_name: 30' in min med +0.2% glu+50ug/ml Trp,25ug tot RNA


title: 1 min Nov500 ug/ml, dnaCacrD 30 min after synchr start

description:
Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.23
Scanning parameters:
Lot batch = nov500_1

source_name: 1 min Nov500 ug/ml, 2 ug Say3AI, pdN6 RT


title: 1005 fork-blocking strain induced for Tus

description:
Category: DNA metabolism
Subcategory: Replication
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
Scanning Software: unknown
Software version: unknown
Scanning parameters:
Lot batch = fork5_1

source_name: 1005, LB + 0.4% arabinose, 90' (tus induced)


title: 2 min Nov2 ug/ml, dnaCacrD 30 min after synchr start

description:
Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = nov2_2

source_name: 2 min Nov2 ug/ml, 2 ug Say3AI, pdN6 RT


title: 7 min Nov500 ug/ml, dnaCacrD 30 min after synchr start

description:
Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.23
Scanning parameters:
Lot batch = nov500_7

source_name: 7 min Nov500 ug/ml, 2 ug Say3AI, pdN6 RT


title: 5'+50ug/ml Trp vs 0' in min med +0.2% glu

description:
Category: Amino Acid metabolism
Subcategory: Tryptophan
Scanning Software: ScanAlyze
Software version: 2.20
Scanning parameters:
Lot batch = cy_b_1

source_name: 5' in min med +0.2% glu+50ug/ml Trp,25ug total RNA


title: 40 min Nov10 ug/ml, dnaCacrD 30 min after synchr start

description:
Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.23
Scanning parameters:
Lot batch = nov10_40

source_name: dnaC fully replicated, 2 ug Sau3AI, pdN6 RT

source_name: 40 min Nov10 ug/ml, 2 ug Sau3AI, pdN6 RT


title: 80 min Nov10 ug/ml, dnaCacrD 30 min after synchr start

description:
Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.23
Scanning parameters:
Lot batch = nov10_80

source_name: 80 min Nov10 ug/ml, 2 ug Sau3AI, pdN6 RT


title: 7 min Nov0 ug/ml, dnaCacrD 30 min after synchr start

description:
Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = nov0_7

source_name: 7 min Nov0 ug/ml, 2 ug Say3AI, pdN6 RT


title: 40 min Nov5 ug/ml, dnaCacrD 30 min after synchr start

description:
Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = nov5_40

source_name: 40 min Nov5 ug/ml, 2 ug Sau3AI, pdN6 RT


title: 2 min Nov10 ug/ml, dnaCacrD 30 min after synchr start

description:
Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.23
Scanning parameters:
Lot batch = nov10_2

source_name: 2 min Nov10 ug/ml, 2 ug Sau3AI, pdN6 RT


title: 40 min Nov2 ug/ml, dnaCacrD 30 min after synchr start

description:
Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = nov2_40

source_name: 40 min Nov2 ug/ml, 2 ug Say3AI, pdN6 RT


title: 80 min Nov5 ug/ml, dnaCacrD 30 min after synchr start

description:
Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = nov5_80

source_name: 80 min Nov5 ug/ml, 2 ug Sau3AI, pdN6 RT


title: 15'+50ug/ml Trp vs 0' in min med +0.2% glu

description:
Category: Amino Acid metabolism
Subcategory: Tryptophan
Scanning Software: ScanAlyze
Software version: 2.20
Scanning parameters:
Lot batch = cy_b_2

source_name: 0' in min med +0.2% glu, 25ug total RNA

source_name: 15' in min med +0.2% glu+50ug/ml Trp,25ug total RNA


title: 0 min Nov0 ug/ml, dnaCacrD 30 min after synchr start

description:
Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = nov0_0

source_name: dnaC fully replicated, 2 ug Say3AI, pdN6 RT

source_name: 0 min Nov0 ug/ml, 2 ug Say3AI, pdN6 RT


title: 20 min Nov0 ug/ml, dnaCacrD 30 min after synchr start

description:
Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = nov0_20

source_name: 20 min Nov0 ug/ml, 2 ug Say3AI, pdN6 RT


title: 1.5 mM diamide (40 min)

description:
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13-92

source_name: time = 0 min

source_name: time = 40 min


title: 1 min Nov0 ug/ml, dnaCacrD 30 min after synchr start

description:
Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = nov0_1

source_name: 1 min Nov0 ug/ml, 2 ug Say3AI, pdN6 RT


title: 0 min Nov500 ug/ml, dnaCacrD 30 min after synchr start

description:
Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.23
Scanning parameters:
Lot batch = nov500_0

source_name: 0 min Nov500 ug/ml, 2 ug Say3AI, pdN6 RT


title: 15' vs 0' in minimal medium +0.2% glu

description:
Category: Amino Acid metabolism
Subcategory: Tryptophan
Scanning Software: ScanAlyze
Software version: 2.20
Scanning parameters:
Lot batch = cy_a_2

source_name: 0' in minimal medium +0.2% glu, 25 ug total RNA

source_name: 15' in minimal medium +0.2% glu, 25 ug total RNA


title: 30' vs 0' in minimal medium +0.2% glu

description:
Category: Amino Acid metabolism
Subcategory: Tryptophan
Scanning Software: ScanAlyze
Software version: 2.20
Scanning parameters:
Lot batch = cy_a_3

source_name: 30' in minimal medium +0.2% glu, 25 ug total RNA


title: 60min after UVtreatment 1, 40J, MG1655 in Davis+0.4%glu

description:
Category: DNA damage
Subcategory: UV radiation
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = uv60min

source_name: 60min UV treated cells, 25 ug total RNA

source_name: untreated cells, 25 ug total RNA


title: cyd1

description:
Category: Amino Acid metabolism
Subcategory: Tryptophan
5' vs. 0', 15 ug/ml indole aa, minimal medium + 0.2% glu
Scanning Software: ScanAlyze
Software version: 2.44
Scanning parameters:
Lot batch = cyd1

source_name: 0' minimal medium + 0.2% glu, 25 ug total

source_name: 5' 15 ug/ml indole aa, minimal medium + 0.2% glu, 25 ug total


title: 5min after UVtreatment 1, 40J, MG1655 in Davis+0.4%glu

description:
Category: DNA damage
Subcategory: UV radiation
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = uv5min

source_name: 5min untreatedcells, 25 ug total RNA


title: cyc3

description:
Category: Amino Acid metabolism
Subcategory: Tryptophan
30' vs. 0', 10 ug/ml indole aa, minimal medium + 0.2% glu
Scanning Software: ScanAlyze
Software version: 2.44
Scanning parameters:
Lot batch = cyc3

source_name: 30' 10 ug/ml indole aa, minimal medium + 0.2% glu, 25 ug total


title: 20 min Nov50 ug/ml, dnaCacrD 30 min after synchr start

description:
Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.23
Scanning parameters:
Lot batch = nov50_20

source_name: 20 min Nov50 ug/ml, 2 ug Say3AI, pdN6 RT


title: 20min after UVtreatment 1', 40J, MG1655 in Davis+0.4%glu

description:
Category: DNA damage
Subcategory: UV radiation
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = uv20min

source_name: 20min UV treated cells, 25 ug total RNA


title: cyd4

description:
Category: Amino Acid metabolism
Subcategory: Tryptophan
60' vs. 0', 15 ug/ml indole aa, minimal medium + 0.2% glu
Scanning Software: ScanAlyze
Software version: 2.44
Scanning parameters:
Lot batch = cyd4

source_name: 60' 15 ug/ml indole aa, minimal medium + 0.2% glu, 25 ug total


title: cyd2

description:
Category: Amino Acid metabolism
Subcategory: Tryptophan
15' vs. 0', 15 ug/ml indole aa, minimal medium + 0.2% glu
Scanning Software: ScanAlyze
Software version: 2.44
Scanning parameters:
Lot batch = cyd2

source_name: 15' 15 ug/ml indole aa, minimal medium + 0.2% glu, 25 ug total


title: 40min after UVtreatment 1, 40J, MG1655 in Davis+0.4%glu

description:
Category: DNA damage
Subcategory: UV radiation
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = uv40min

source_name: 40min untreatedcells, 25 ug total RNA


title: lexA 20' after UV vs. 0', MG1655

description:
Category: DNA metabolism
Subcategory: UV radiation
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = lexa_uv20

source_name: 0', before UV treatment, 25 ug total RNA, 2 ug pdN6

source_name: lexA 20 min after UV treatment, 25 ug total RNA, 2 ug pdN6


title: lexA vs. wt, before UV treatment, MG1655

description:
Category: DNA metabolism
Subcategory: UV radiation
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = lexa_wt_2

source_name: 0' wt, before UV treatment, 25 ug total RNA, 2 ug pdN6

source_name: 0' lexA, before UV 25 ug total RNA, 2 ug pdN6


title: 60' vs 0' in minimal medium +0.2% glu, II

description:
Category: Amino Acid metabolism
Subcategory: Tryptophan
Scanning Software: ScanAlyze
Software version: 2.20
Scanning parameters:
Lot batch = cy_a_4

source_name: 60' in minimal medium +0.2% glu, 25 ug total RNA


title: cyc2

description:
Category: Amino Acid metabolism
Subcategory: Tryptophan
15' vs. 0', 10 ug/ml indole aa, minimal medium + 0.2% glu
Scanning Software: ScanAlyze
Software version: 2.44
Scanning parameters:
Lot batch = cyc2

source_name: 15' 10 ug/ml indole aa, minimal medium + 0.2% glu, 25 ug total


title: lexA 40' after UV vs. 0', MG1655

description:
Category: DNA metabolism
Subcategory: UV radiation
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = lexa_uv40

source_name: lexA 40 min after UV treatment, 25 ug total RNA, 2 ug pdN6


title: 60min UVtreatment control, MG1655 in Davis+0.4%glu

description:
Category: DNA damage
Subcategory: UV radiation
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = uv60cntrl

source_name: 60min untreatedcells, 25 ug total RNA

source_name: untreated cells, 25 ug total RNA


title: 20min UVtreatment control, MG1655 in Davis+0.4%glu

description:
Category: DNA damage
Subcategory: UV radiation
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = uv20cntrl

source_name: 20min untreatedcells, 25 ug total RNA


title: cy_a4

description:
Category: Amino Acid metabolism
Subcategory: Tryptophan
60' vs. ref 0', minimal +.2%glu, W3100
Scanning Software: ScanAlyze
Software version: 2.44
Scanning parameters:
Lot batch = cy_a4

source_name: reference 0', min +.2% glu, 25 ug RNA

source_name: 60' in min +.2% glu, 25 ug RNA


title: lexA 20' after NOuv vs. 0', MG1655

description:
Category: DNA metabolism
Subcategory: UV radiation
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = lexa_nouv20

source_name: lexA 20 min after NOuv, 25 ug total RNA, 2 ug pdN6


title: 10min after UVtreatment 1', 40J, MG1655 in Davis+0.4%glu

description:
Category: DNA damage
Subcategory: UV radiation
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = uv10min

source_name: 10min UV treated cells, 25 ug total RNA


title: cyc1

description:
Category: Amino Acid metabolism
Subcategory: Tryptophan
5' vs. 0', 10 ug/ml indole aa, minimal medium + 0.2% glu
Scanning Software: ScanAlyze
Software version: 2.44
Scanning parameters:
Lot batch = cyc1

source_name: 0' minimal medium + 0.2% glu, 25 ug total

source_name: 5' 10 ug/ml indole aa, minimal medium + 0.2% glu, 25 ug total


title: cyc4

description:
Category: Amino Acid metabolism
Subcategory: Tryptophan
60' vs. 0', 10 ug/ml indole aa, minimal medium + 0.2% glu
Scanning Software: ScanAlyze
Software version: 2.44
Scanning parameters:
Lot batch = cyc4

source_name: 60' 10 ug/ml indole aa, minimal medium + 0.2% glu, 25 ug total


title: lexA 60' after NOuv vs. 0', MG1655

description:
Category: DNA metabolism
Subcategory: UV radiation
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = lexa_nouv60

source_name: 0', before UV treatment, 25 ug total RNA, 2 ug pdN6

source_name: lexA 60 min after NOuv, 25 ug total RNA, 2 ug pdN6


title: lexA 60' after UV vs. 0', MG1655

description:
Category: DNA metabolism
Subcategory: UV radiation
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = lexa_uv60

source_name: lexA 60 min after UV treatment, 25 ug total RNA, 2 ug pdN6