title: 2395 - mAdbID:53364

description: mAdb experiment ID: 53364

value: Lymphoma

value: Follow up years:4.92


title: 2396 - mAdbID:53365

status: Public on May 31 2006

type: RNA

city: Bethesda

first: Sandeep

last: Dave

state: MD

address: 9000 Rockville Pike

country: USA

institute: National Cancer Institute

description: mAdb experiment ID: 53365

hyb_protocol: Affymetrix Hybridization Protocol Other: Following fragmentation, 20 micrograms of cRNA were hybridized for 16 hours at 45C on LymphDX Custom Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.

label: biotin

molecule: total RNA

organism: Homo sapiens

label_protocol:
Affymetrix Labeling Protocol
Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg mRNA (Expression Analysis Technical Manual, 2001, Affymetrix).

extract_protocol: Sample Extraction Protocol

tag: Gender

value: male

tag: Age

tag: Tissue

value: lymph node

tag: Disease state

tag: Individual

tag: Clinical info

value: Final pathology diagnosis:High grade NOS

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:alive

value: Follow up years:2.50


title: 2400 - mAdbID:53366

description: mAdb experiment ID: 53366

value: female

value: Final pathology diagnosis:Atypical BL


title: A X206C05

city: Singapore

first: Lance

middle: David

last: Miller

address: 60 Bioplois Street, #02-01 Genome

department: Microarray and Expression Genomics

country: Singapore

institute: Genome Institute of Singapore

description: Series of 249 tumours

hyb_protocol: Standard Affymetrix procedure

scan_protocol: Standard Affymetrix procedure

data_processing: Affymetrix Microarray Suite Version 5.0

source_name: Breast Tumor

label_protocol: Approximately 10ug of total RNA was processed to produce biotynylated cRNA targets

extract_protocol: Qiagen RNeasy Mini Kit

tag: INDEX (ID)

tag: Elston (NGS) histologic grade

tag: Genetic grade signature status prediction (by SWS classifier)

tag: Probability 1-like (by SWS classifier)

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

tag: ER+, endocrine therapy only (1=included in survival analysis):

tag: No systemic therapy (1=included in survival analysis)

tag: ER status

value: ER+

tag: Lymph node status

value: LN-

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)

tag: age at diagnosis

tag: tumor size (mm)


title: 2394 - mAdbID:53363

description: mAdb experiment ID: 53363

tag: Gender

tag: Age

tag: Tissue

tag: Disease state

tag: Individual

value: Final pathology diagnosis:BL

value: Final microarray diagnosis:BL

value: Follow up years:2.42


title: 2405 - mAdbID:53368

description: mAdb experiment ID: 53368

tag: Clinical info

value: Follow up years:1.92

value: Chemotherapy:Intensive Regimen

value: ECOG performance status:0

value: Number of nodal sites:0


title: 2393 - mAdbID:53362

description: mAdb experiment ID: 53362

value: Lymphoma


title: A X19C33

description: Series of 249 tumours

tag: INDEX (ID)

tag: Elston (NGS) histologic grade

tag: Genetic grade signature status prediction (by SWS classifier)

tag: Probability 1-like (by SWS classifier)

tag: Probability 3-like (by SWS classifier)

tag: No systemic therapy (1=included in survival analysis):

value: LN+


title: A X207C08

description: Series of 249 tumours

tag: DFS TIME (yrs)

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

tag: ER+, endocrine therapy only (1=included in survival analysis)

tag: ER status


title: A X209C10

description: Series of 249 tumours

tag: ER+, endocrine therapy only (1=included in survival analysis):

tag: No systemic therapy (1=included in survival analysis)

tag: Lymph node status

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)

tag: age at diagnosis

tag: tumor size (mm)


title: A X204B85

description: Series of 249 tumours

tag: INDEX (ID)


title: A X205B99

description: Series of 249 tumours

tag: Elston (NGS) histologic grade


title: A X199B55

description: Series of 249 tumours

tag: Genetic grade signature status prediction (by SWS classifier)


title: A X200B47

description: Series of 249 tumours

tag: Probability 1-like (by SWS classifier)


title: A X201B68

description: Series of 249 tumours

tag: Probability 3-like (by SWS classifier)


title: A X203B49

description: Series of 249 tumours

tag: No systemic therapy (1=included in survival analysis):


title: 2391 - mAdbID:53360

description: mAdb experiment ID: 53360

tag: Tissue

value: lymph node

tag: Disease state

tag: Individual

tag: Clinical info


title: A X198B90

description: Series of 249 tumours

tag: DFS TIME (yrs)

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

tag: ER status


title: 2392 - mAdbID:53361

description: mAdb experiment ID: 53361


title: A X197B95

description: Series of 249 tumours

tag: ER+, endocrine therapy only (1=included in survival analysis):

tag: No systemic therapy (1=included in survival analysis)

tag: Lymph node status

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)


title: 1053 - mAdbID:53015

description: mAdb experiment ID: 53015

tag: Gender

tag: Age

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL PMBL

value: Follow up status:dead

value: Follow up years:1.04

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:2

value: LDH ratio:2.6

value: Number of nodal sites:2


title: 2389 - mAdbID:53358

description: mAdb experiment ID: 53358

value: Final pathology diagnosis:Atypical BL

value: Final microarray diagnosis:BL


title: 2037 - mAdbID:53294

description: mAdb experiment ID: 53294

value: male


title: 2386 - mAdbID:53355

description: mAdb experiment ID: 53355

value: Final pathology diagnosis:BL


title: 2082 - mAdbID:53031

description: mAdb experiment ID: 53031


title: 2020 - mAdbID:53017

description: mAdb experiment ID: 53017

value: Follow up status:alive

value: Follow up years:2.08

value: ECOG performance status:0


title: 546 - mAdbID:53018

description: mAdb experiment ID: 53018

value: female

value: lymph node

value: Lymphoma

value: Follow up years:0.78

value: ECOG performance status:1

value: LDH ratio:4.81


title: A X191B79

description: Series of 249 tumours

tag: INDEX (ID)

tag: Elston (NGS) histologic grade

tag: Genetic grade signature status prediction (by SWS classifier)

tag: Probability 1-like (by SWS classifier)

tag: ER+, endocrine therapy only (1=included in survival analysis)

value: ER+

value: LN-

tag: age at diagnosis

tag: tumor size (mm)


title: A X195B75

description: Series of 249 tumours

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)


title: A X189B83

description: Series of 249 tumours

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

tag: No systemic therapy (1=included in survival analysis):

value: ER-


title: A X194B60

description: Series of 249 tumours

tag: ER status

value: LN+


title: 1048 - mAdbID:53014

description: mAdb experiment ID: 53014

tag: Tissue

tag: Disease state

tag: Individual

tag: Clinical info

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL PMBL

value: Follow up years:7.70

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:2.23

value: Number of nodal sites:2


title: A X18C56

description: Series of 249 tumours

tag: INDEX (ID)

tag: ER+, endocrine therapy only (1=included in survival analysis):

tag: No systemic therapy (1=included in survival analysis)

tag: Lymph node status

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)


title: A X188B13

description: Series of 249 tumours

tag: Elston (NGS) histologic grade

tag: Genetic grade signature status prediction (by SWS classifier)

tag: Probability 1-like (by SWS classifier)

tag: age at diagnosis


title: 1946 - mAdbID:53013

description: mAdb experiment ID: 53013

tag: Gender

value: male

tag: Age

value: Final microarray diagnosis:DLBCL ABC

value: Follow up status:dead

value: Follow up years:0.68

value: LDH ratio:1.3


title: A X196B81

description: Series of 249 tumours

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

tag: tumor size (mm)


title: A X187B36

description: Series of 249 tumours

tag: No systemic therapy (1=included in survival analysis):

tag: ER status


title: A X192B69

description: Series of 249 tumours

tag: INDEX (ID)

tag: ER+, endocrine therapy only (1=included in survival analysis):


title: 851 - mAdbID:52991

description: mAdb experiment ID: 52991

tag: Tissue

value: lymph node

tag: Disease state

value: Lymphoma

tag: Individual

tag: Clinical info

value: Final microarray diagnosis:BL

value: Follow up years:0.05

value: ECOG performance status:1

value: LDH ratio:0.85


title: A X193B72

description: Series of 249 tumours

tag: Elston (NGS) histologic grade

tag: Genetic grade signature status prediction (by SWS classifier)

tag: Probability 1-like (by SWS classifier)

value: ER-

tag: Lymph node status

value: LN+

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)


title: A X186B22

description: Series of 249 tumours

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)

tag: ER+, endocrine therapy only (1=included in survival analysis)

value: ER+

tag: age at diagnosis


title: A X183B75

description: Series of 249 tumours

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

tag: No systemic therapy (1=included in survival analysis):

tag: tumor size (mm)


title: A X184B38

description: Series of 249 tumours

tag: INDEX (ID)

tag: ER+, endocrine therapy only (1=included in survival analysis):

tag: No systemic therapy (1=included in survival analysis)

tag: ER status

value: LN-


title: 820 - mAdbID:52988

description: mAdb experiment ID: 52988

tag: Gender

tag: Age

tag: Tissue

tag: Disease state

tag: Individual

tag: Clinical info

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Follow up years:1.59

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:0

value: LDH ratio:0.91

value: Number of nodal sites:0


title: A X185B44

description: Series of 249 tumours

tag: Elston (NGS) histologic grade

tag: Genetic grade signature status prediction (by SWS classifier)

tag: Probability 1-like (by SWS classifier)

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)

tag: Lymph node status

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)


title: 875 - mAdbID:52994

description: mAdb experiment ID: 52994

value: male

value: lymph node

value: Final microarray diagnosis:DLBCL ABC

value: Follow up status:alive

value: Follow up years:8.45

value: LDH ratio:1.42

value: Number of nodal sites:1


title: 840 - mAdbID:52990

description: mAdb experiment ID: 52990

value: female

value: Lymphoma

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:3.40

value: LDH ratio:0.6


title: 819 - mAdbID:52987

description: mAdb experiment ID: 52987

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Follow up status:dead

value: Follow up years:0.72

value: ECOG performance status:2

value: LDH ratio:2.8

value: Number of nodal sites:2


title: 823 - mAdbID:52989

description: mAdb experiment ID: 52989

value: male

value: lymph node

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:0.16

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:3

value: LDH ratio:-1


title: 817 - mAdbID:52986

description: mAdb experiment ID: 52986

value: female

value: Lymphoma

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:2.76

value: LDH ratio:0.78

value: Number of nodal sites:1


title: 726 - mAdbID:52980

description: mAdb experiment ID: 52980

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Follow up status:alive

value: Follow up years:7.62

value: ECOG performance status:1

value: LDH ratio:0.82


title: 748 - mAdbID:52981

description: mAdb experiment ID: 52981

value: lymph node

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up status:dead

value: Follow up years:1.01

value: Chemotherapy:Intensive Regimen

value: LDH ratio:2.38

value: Number of nodal sites:4


title: 816 - mAdbID:52985

description: mAdb experiment ID: 52985

value: male

value: Lymphoma

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:1.86

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:3

value: LDH ratio:10.2


title: 1945 - mAdbID:52825

description: mAdb experiment ID: 52825

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL PMBL

value: Follow up years:0.84

value: ECOG performance status:2

value: LDH ratio:2.3


title: A X182B43

description: Series of 249 tumours

tag: INDEX (ID)

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

tag: No systemic therapy (1=included in survival analysis):

value: ER-

value: LN+

tag: age at diagnosis

tag: tumor size (mm)


title: 772 - mAdbID:52984

description: mAdb experiment ID: 52984

tag: Gender

value: female

tag: Age

tag: Tissue

value: lymph node

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:alive

value: Follow up years:2.48

value: ECOG performance status:1

value: LDH ratio:-1

value: Number of nodal sites:1


title: A X175B72

description: Series of 249 tumours

tag: ER+, endocrine therapy only (1=included in survival analysis):

tag: ER status

value: ER+


title: A X17C40

description: Series of 249 tumours

tag: Elston (NGS) histologic grade

tag: Genetic grade signature status prediction (by SWS classifier)

tag: ER+, endocrine therapy only (1=included in survival analysis)

value: LN?


title: 724 - mAdbID:52978

description: mAdb experiment ID: 52978

tag: Disease state

value: Lymphoma

tag: Individual

tag: Clinical info

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Follow up status:dead

value: Follow up years:1.40

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:1.16


title: A X178B74

description: Series of 249 tumours

tag: INDEX (ID)

tag: Probability 1-like (by SWS classifier)

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)

tag: No systemic therapy (1=included in survival analysis)

tag: Lymph node status

value: LN-

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)


title: A X180B38

description: Series of 249 tumours

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

tag: age at diagnosis

tag: tumor size (mm)


title: A X177B67

description: Series of 249 tumours

tag: Elston (NGS) histologic grade

tag: ER+, endocrine therapy only (1=included in survival analysis):

tag: ER status


title: 2271 - mAdbID:52773

description: mAdb experiment ID: 52773

tag: Gender

value: male

tag: Age

tag: Tissue

value: lymph node

tag: Disease state

value: Final pathology diagnosis:BL

value: Final microarray diagnosis:BL

value: Follow up years:0.75


title: A X181B70

description: Series of 249 tumours

tag: INDEX (ID)

tag: Genetic grade signature status prediction (by SWS classifier)

tag: Probability 1-like (by SWS classifier)

tag: No systemic therapy (1=included in survival analysis):

value: LN+


title: 771 - mAdbID:52983

description: mAdb experiment ID: 52983

value: female

tag: Individual

tag: Clinical info

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:6.80

value: ECOG performance status:2

value: LDH ratio:-1

value: Number of nodal sites:1


title: 421 - mAdbID:52975

description: mAdb experiment ID: 52975

value: Lymphoma

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:dead

value: Follow up years:1.24

value: ECOG performance status:1

value: LDH ratio:0.72


title: 2269 - mAdbID:52772

description: mAdb experiment ID: 52772

value: male

value: lymph node

value: Follow up years:0.17


title: 2268 - mAdbID:52771

description: mAdb experiment ID: 52771

value: female

value: Final pathology diagnosis:Atypical BL

value: Final microarray diagnosis:BL

value: Follow up years:0.08


title: 2267 - mAdbID:52770

description: mAdb experiment ID: 52770

value: Final microarray diagnosis:DLBCL ABC


title: A X172B19

description: Series of 249 tumours

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: No systemic therapy (1=included in survival analysis)

value: ER+

tag: Lymph node status

value: LN-

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)


title: 725 - mAdbID:52979

description: mAdb experiment ID: 52979

value: Lymphoma

value: Submitting diagnosis:DLBCL

value: Follow up years:0.96

value: LDH ratio:0.74


title: A X176B74

description: Series of 249 tumours

tag: Elston (NGS) histologic grade

tag: All patients (1=included in survival analysis)

tag: ER+, endocrine therapy only (1=included in survival analysis):

tag: ER status

tag: age at diagnosis

tag: tumor size (mm)


title: A X179B28

description: Series of 249 tumours

tag: INDEX (ID)

tag: Genetic grade signature status prediction (by SWS classifier)


title: A X173B43

description: Series of 249 tumours

tag: Probability 1-like (by SWS classifier)

tag: ER+, endocrine therapy only (1=included in survival analysis)

tag: No systemic therapy (1=included in survival analysis):

value: LN+


title: A X170B15

description: Series of 249 tumours

tag: Probability 3-like (by SWS classifier)


title: A X174B41

description: Series of 249 tumours

tag: DFS TIME (yrs)


title: 2128 - mAdbID:52768

description: mAdb experiment ID: 52768

tag: Gender

tag: Age

tag: Tissue

tag: Disease state

tag: Individual

tag: Clinical info

value: Final pathology diagnosis:DLBCL


title: 2101 - mAdbID:52763

description: mAdb experiment ID: 52763

value: Final pathology diagnosis:High grade NOS

value: Follow up status:dead

value: Follow up years:0.58

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:1

value: LDH ratio:0.89

value: Number of nodal sites:3


title: 2103 - mAdbID:52764

description: mAdb experiment ID: 52764

value: lymph node


title: 2100 - mAdbID:52762

description: mAdb experiment ID: 52762

value: male

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up years:1.67


title: A X168B51

description: Series of 249 tumours

tag: Elston (NGS) histologic grade

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

tag: ER+, endocrine therapy only (1=included in survival analysis):

tag: No systemic therapy (1=included in survival analysis)

value: ER+

tag: Lymph node status

value: LN-

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)


title: 2091 - mAdbID:52759

description: mAdb experiment ID: 52759

value: Lymphoma

value: Final pathology diagnosis:Atypical BL

value: Final microarray diagnosis:BL


title: A X169B79

description: Series of 249 tumours

tag: INDEX (ID)

tag: Genetic grade signature status prediction (by SWS classifier)

tag: Probability 1-like (by SWS classifier)

tag: ER+, endocrine therapy only (1=included in survival analysis)

tag: ER status

tag: age at diagnosis

tag: tumor size (mm)


title: A X16C97

description: Series of 249 tumours

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)


title: 2097 - mAdbID:52760

description: mAdb experiment ID: 52760

tag: Gender

value: female

tag: Age

tag: Tissue

tag: Disease state

tag: Individual

tag: Clinical info

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:0.25


title: A X164B81

description: Series of 249 tumours

tag: Elston (NGS) histologic grade

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

tag: ER+, endocrine therapy only (1=included in survival analysis):

tag: No systemic therapy (1=included in survival analysis)

value: ER-

tag: Lymph node status


title: A X163B27

description: Series of 249 tumours

tag: INDEX (ID)

tag: Genetic grade signature status prediction (by SWS classifier)

tag: Probability 1-like (by SWS classifier)

tag: ER status

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)


title: A X166B79

description: Series of 249 tumours

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)

tag: ER+, endocrine therapy only (1=included in survival analysis)

tag: No systemic therapy (1=included in survival analysis):

value: LN+

tag: age at diagnosis

tag: tumor size (mm)


title: A X165B72

description: Series of 249 tumours

tag: Elston (NGS) histologic grade


title: 2033 - mAdbID:52749

description: mAdb experiment ID: 52749

tag: Gender

tag: Age

tag: Tissue

tag: Disease state

tag: Individual

tag: Clinical info


title: 2099 - mAdbID:52761

description: mAdb experiment ID: 52761

value: Follow up status:dead

value: Follow up years:0.50


title: 2032 - mAdbID:52748

description: mAdb experiment ID: 52748

value: lymph node


title: 477 - mAdbID:52724

description: mAdb experiment ID: 52724

value: male

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:1.70

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:0

value: LDH ratio:-1

value: Number of nodal sites:0


title: 2086 - mAdbID:52754

description: mAdb experiment ID: 52754

value: female

value: Lymphoma

value: Final pathology diagnosis:High grade NOS


title: 2088 - mAdbID:52755

description: mAdb experiment ID: 52755

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:BL


title: 821 - mAdbID:52339

description: mAdb experiment ID: 52339

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:alive

value: Follow up years:9.47

value: ECOG performance status:1


title: A X159B47

description: Series of 249 tumours

tag: INDEX (ID)

tag: Genetic grade signature status prediction (by SWS classifier)

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

value: ER+

tag: Lymph node status

value: LN+


title: A X155B52

description: Series of 249 tumours

tag: Probability 1-like (by SWS classifier)

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)

tag: ER+, endocrine therapy only (1=included in survival analysis):

tag: No systemic therapy (1=included in survival analysis)

tag: ER status

value: ER-

value: LN-

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)


title: A X156B01

description: Series of 249 tumours

tag: Elston (NGS) histologic grade

tag: age at diagnosis

tag: tumor size (mm)


title: A X158B84

description: Series of 249 tumours


title: A X162B98

description: Series of 249 tumours

tag: ER+, endocrine therapy only (1=included in survival analysis)

tag: No systemic therapy (1=included in survival analysis):


title: A X15C94

description: Series of 249 tumours

tag: INDEX (ID)


title: A X161B31

description: Series of 249 tumours

tag: Genetic grade signature status prediction (by SWS classifier)


title: A X154B42

description: Series of 249 tumours

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer


title: A X171B77

description: Series of 249 tumours

tag: All patients (1=included in survival analysis)


title: A X153B09

description: Series of 249 tumours

tag: Lymph node status


title: 1948 - mAdbID:52294

description: mAdb experiment ID: 52294

tag: Gender

tag: Age

tag: Tissue

value: lymph node

tag: Disease state

tag: Individual

tag: Clinical info

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL PMBL

value: Follow up years:7.96

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:1.7


title: 1993 - mAdbID:52300

description: mAdb experiment ID: 52300

value: female

value: Lymphoma

value: Follow up status:dead

value: Follow up years:1.33

value: LDH ratio:3.13


title: 2002 - mAdbID:52301

description: mAdb experiment ID: 52301

value: Final pathology diagnosis:DLBCL

value: Follow up status:alive

value: Follow up years:6.62

value: ECOG performance status:2

value: LDH ratio:1.95


title: 2092 - mAdbID:52304

description: mAdb experiment ID: 52304

value: male

value: Follow up years:1.27

value: ECOG performance status:1

value: LDH ratio:2.2


title: 2019 - mAdbID:52302

description: mAdb experiment ID: 52302

value: lymph node

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL PMBL

value: Follow up years:0.99

value: ECOG performance status:0

value: LDH ratio:1.24


title: 1992 - mAdbID:52299

description: mAdb experiment ID: 52299

value: Lymphoma

value: Follow up status:dead

value: Follow up years:1.00

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:2.07


title: 1989 - mAdbID:52298

description: mAdb experiment ID: 52298

value: female

value: Final pathology diagnosis:DLBCL

value: Follow up years:1.33

value: LDH ratio:3.13


title: 1949 - mAdbID:52297

description: mAdb experiment ID: 52297

value: male

value: Follow up status:alive

value: Follow up years:4.28

value: ECOG performance status:1

value: LDH ratio:0.9


title: 1943 - mAdbID:52293

description: mAdb experiment ID: 52293

value: lymph node

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL PMBL

value: Follow up years:8.96

value: ECOG performance status:2

value: LDH ratio:1.1


title: A X152B99

description: Series of 249 tumours

tag: Probability 1-like (by SWS classifier)

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)

tag: ER+, endocrine therapy only (1=included in survival analysis):

tag: No systemic therapy (1=included in survival analysis)

tag: ER status

value: ER+

value: LN-

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)


title: A X160B16

description: Series of 249 tumours

tag: INDEX (ID)

tag: Elston (NGS) histologic grade

tag: Genetic grade signature status prediction (by SWS classifier)

tag: age at diagnosis

tag: tumor size (mm)


title: A X147B19

description: Series of 249 tumours

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

tag: No systemic therapy (1=included in survival analysis):

value: ER-

tag: Lymph node status

value: LN+


title: 1941 - mAdbID:52291

description: mAdb experiment ID: 52291

tag: Gender

value: female

tag: Age

tag: Tissue

tag: Disease state

value: Lymphoma

tag: Individual

tag: Clinical info

value: Final pathology diagnosis:DLBCL

value: Follow up years:0.71

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:0


title: 1942 - mAdbID:52292

description: mAdb experiment ID: 52292

value: male

value: Follow up status:alive

value: Follow up years:0.88

value: ECOG performance status:1

value: LDH ratio:2.2


title: A X14B98

description: Series of 249 tumours

tag: Probability 1-like (by SWS classifier)

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)

tag: ER+, endocrine therapy only (1=included in survival analysis)

tag: ER status


title: 1935 - mAdbID:52290

description: mAdb experiment ID: 52290

value: lymph node

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL PMBL

value: Follow up years:12.42

value: LDH ratio:2.6


title: A X144B49

description: Series of 249 tumours

tag: INDEX (ID)

tag: Elston (NGS) histologic grade

tag: Genetic grade signature status prediction (by SWS classifier)

tag: ER+, endocrine therapy only (1=included in survival analysis):

tag: No systemic therapy (1=included in survival analysis)

value: ER+

value: LN-

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)

tag: age at diagnosis


title: A X151B84

description: Series of 249 tumours

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

tag: Lymph node status

tag: tumor size (mm)


title: 994 - mAdbID:52287

description: mAdb experiment ID: 52287

tag: Gender

tag: Age

tag: Tissue

tag: Disease state

value: Lymphoma

tag: Individual

tag: Clinical info

value: Follow up years:4.79

value: LDH ratio:0.71


title: A X145B10

description: Series of 249 tumours

tag: INDEX (ID)

tag: Probability 1-like (by SWS classifier)

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)

tag: ER status


title: A X150B81

description: Series of 249 tumours

tag: Elston (NGS) histologic grade

tag: Genetic grade signature status prediction (by SWS classifier)

tag: ER+, endocrine therapy only (1=included in survival analysis)

tag: No systemic therapy (1=included in survival analysis):

value: LN+

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)


title: A X146B39

description: Series of 249 tumours

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

tag: ER+, endocrine therapy only (1=included in survival analysis):

value: ER-

tag: Lymph node status

tag: age at diagnosis

tag: tumor size (mm)


title: A X140B91

description: Series of 249 tumours

tag: No systemic therapy (1=included in survival analysis)


title: A X139B03

description: Series of 249 tumours

tag: INDEX (ID)


title: A X142B05

description: Series of 249 tumours

tag: Probability 1-like (by SWS classifier)


title: A X143B81

description: Series of 249 tumours

tag: Probability 3-like (by SWS classifier)

value: LN?


title: A X13B79

description: Series of 249 tumours

tag: DFS TIME (yrs)


title: 484 - mAdbID:52279

description: mAdb experiment ID: 52279

tag: Gender

value: male

tag: Age

tag: Tissue

tag: Disease state

tag: Individual

tag: Clinical info

value: Final pathology diagnosis:DLBCL

value: Follow up status:dead

value: Follow up years:1.40

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:2

value: LDH ratio:1.44

value: Number of nodal sites:4


title: 824 - mAdbID:52285

description: mAdb experiment ID: 52285

value: lymph node

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL PMBL

value: Follow up status:alive

value: Follow up years:12.24

value: ECOG performance status:0

value: Number of nodal sites:0


title: 691 - mAdbID:52283

description: mAdb experiment ID: 52283

value: Lymphoma

value: Follow up years:0.32

value: ECOG performance status:1

value: LDH ratio:9.2


title: 791 - mAdbID:52284

description: mAdb experiment ID: 52284

value: female

value: Final pathology diagnosis:DLBCL

value: Follow up status:dead

value: Follow up years:1.33


title: 570 - mAdbID:52281

description: mAdb experiment ID: 52281

value: Follow up years:14.40

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:1.1


title: 621 - mAdbID:52282

description: mAdb experiment ID: 52282

value: male

value: lymph node

value: Submitting diagnosis:DLBCL

value: Follow up years:8.14

value: LDH ratio:0.92


title: 751 - mAdbID:52278

description: mAdb experiment ID: 52278

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up status:alive

value: Follow up years:9.99

value: ECOG performance status:0

value: LDH ratio:0.72

value: Number of nodal sites:0


title: 642 - mAdbID:52254

description: mAdb experiment ID: 52254

value: female

value: Lymphoma

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:0.34

value: ECOG performance status:2

value: LDH ratio:1.32


title: A X136B04

description: Series of 249 tumours

tag: Elston (NGS) histologic grade

tag: Genetic grade signature status prediction (by SWS classifier)

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: ER status

value: ER+

value: LN-

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)


title: 856 - mAdbID:52257

description: mAdb experiment ID: 52257

value: male

value: lymph node

value: Submitting diagnosis:DLBCL

value: Follow up status:dead

value: Follow up years:0.60

value: LDH ratio:1.17


title: 701 - mAdbID:52244

description: mAdb experiment ID: 52244

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:alive

value: Follow up years:3.90

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:1

value: LDH ratio:1.54


title: 625 - mAdbID:52253

description: mAdb experiment ID: 52253

value: Lymphoma

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up years:5.24

value: ECOG performance status:0

value: LDH ratio:0.88

value: Number of nodal sites:1


title: A X134B33

description: Series of 249 tumours

tag: All patients (1=included in survival analysis)

tag: ER+, endocrine therapy only (1=included in survival analysis):

value: ER+

tag: Lymph node status

value: LN-

tag: age at diagnosis

tag: tumor size (mm)


title: 439 - mAdbID:52252

description: mAdb experiment ID: 52252

value: lymph node

value: Submitting diagnosis:DLBCL


title: A X135B40

description: Series of 249 tumours

tag: INDEX (ID)

tag: Probability 1-like (by SWS classifier)

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)

tag: ER+, endocrine therapy only (1=included in survival analysis)

tag: No systemic therapy (1=included in survival analysis):


title: A X131B79

description: Series of 249 tumours

value: LN+


title: A X137B88

description: Series of 249 tumours

tag: No systemic therapy (1=included in survival analysis)

value: ER-


title: A X138B34

description: Series of 249 tumours

tag: Elston (NGS) histologic grade


title: 1039 - mAdbID:52233

description: mAdb experiment ID: 52233

tag: Gender

value: male

tag: Age

tag: Tissue

tag: Disease state

tag: Individual

tag: Clinical info

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:dead

value: Follow up years:2.05

value: ECOG performance status:2

value: LDH ratio:2.51


title: A X127B00

description: Series of 249 tumours

tag: Genetic grade signature status prediction (by SWS classifier)

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

tag: ER+, endocrine therapy only (1=included in survival analysis):

tag: ER status

tag: Lymph node status

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)


title: A X130B92

description: Series of 249 tumours

tag: INDEX (ID)

tag: Probability 1-like (by SWS classifier)

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)

tag: ER+, endocrine therapy only (1=included in survival analysis)

tag: age at diagnosis

tag: tumor size (mm)


title: A X120B73

description: Series of 249 tumours

tag: Elston (NGS) histologic grade

tag: No systemic therapy (1=included in survival analysis)


title: 1038 - mAdbID:52232

description: mAdb experiment ID: 52232

tag: Gender

tag: Age

tag: Tissue

tag: Disease state

value: Lymphoma

tag: Individual

tag: Clinical info

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:0.71

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:1

value: LDH ratio:1.38

value: Number of nodal sites:0


title: 1034 - mAdbID:52231

description: mAdb experiment ID: 52231

value: female

value: lymph node

value: Submitting diagnosis:DLBCL

value: Follow up years:2.31

value: ECOG performance status:0

value: LDH ratio:0.356


title: 1049 - mAdbID:52204

description: mAdb experiment ID: 52204

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:dead

value: Follow up years:1.33

value: LDH ratio:1.56

value: Number of nodal sites:2


title: 1045 - mAdbID:52203

description: mAdb experiment ID: 52203

value: male

value: Lymphoma

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:2.26

value: LDH ratio:0.98


title: 1043 - mAdbID:52202

description: mAdb experiment ID: 52202

value: female

value: Chemotherapy:CHOP-Like Regimen

value: Number of nodal sites:0


title: 1041 - mAdbID:52201

description: mAdb experiment ID: 52201

value: lymph node

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up years:3.13

value: ECOG performance status:1

value: LDH ratio:0.802

value: Number of nodal sites:3


title: A X122B81

description: Series of 249 tumours

tag: Genetic grade signature status prediction (by SWS classifier)

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

tag: ER+, endocrine therapy only (1=included in survival analysis):

tag: ER status

value: ER+

tag: Lymph node status

value: LN-


title: 1037 - mAdbID:52200

description: mAdb experiment ID: 52200

value: Lymphoma

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:dead

value: Follow up years:0.23

value: ECOG performance status:3

value: LDH ratio:0.724

value: Number of nodal sites:1


title: A X128B48

description: Series of 249 tumours

tag: INDEX (ID)

tag: Probability 1-like (by SWS classifier)

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)

value: ER?

value: LN?

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)


title: A X113B11

description: Series of 249 tumours

tag: Elston (NGS) histologic grade

tag: No systemic therapy (1=included in survival analysis)

tag: age at diagnosis

tag: tumor size (mm)


title: A X11B47

description: Series of 249 tumours

value: ER-


title: A X111B51

description: Series of 249 tumours


title: A X114B68

description: Series of 249 tumours

tag: ER+, endocrine therapy only (1=included in survival analysis)

tag: No systemic therapy (1=included in survival analysis):

value: LN+


title: A X10B88

description: Series of 249 tumours

tag: Genetic grade signature status prediction (by SWS classifier)


title: 996 - mAdbID:52199

description: mAdb experiment ID: 52199

tag: Gender

value: male

tag: Age

tag: Tissue

value: lymph node

tag: Disease state

tag: Individual

tag: Clinical info

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:0.21

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:6


title: A X124B25

description: Series of 249 tumours

tag: INDEX (ID)

tag: Probability 1-like (by SWS classifier)

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

tag: ER+, endocrine therapy only (1=included in survival analysis):

tag: ER status

value: ER+

tag: Lymph node status

value: LN-


title: A X110B34

description: Series of 249 tumours

tag: Elston (NGS) histologic grade

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)

tag: No systemic therapy (1=included in survival analysis)

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)

tag: age at diagnosis

tag: tumor size (mm)


title: A X112B55

description: Series of 249 tumours

tag: Genetic grade signature status prediction (by SWS classifier)

tag: ER+, endocrine therapy only (1=included in survival analysis)

tag: No systemic therapy (1=included in survival analysis):


title: 995 - mAdbID:52198

description: mAdb experiment ID: 52198

tag: Gender

tag: Age

tag: Tissue

tag: Disease state

value: Lymphoma

tag: Individual

tag: Clinical info

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:alive

value: Follow up years:6.65

value: ECOG performance status:1

value: LDH ratio:0.76


title: Thrombin stimulated Polysome Fraction

city: Salt Lake City

first: Douglas

middle: I.

last: Schmid

state: UT

department: HMBG

institute: University of Utah

description: These samples were collected as part of a polysome profiling experiment in which monosome and polysome associated mRNA was collected via centrifugation and fractionation using an Isco fractionator.  This sample is the Thrombin polysome fraction used to calculate a translation index as follows:  (Control polysome/control monosome)/(thrombin polysome/thrombin polysome).

data_processing: The value column was generated by dividing the SIGNAL_RAW values by the median signal intensity of the entire membrane.  This was done in order to compare multiple array values.

label: alpha-33P dCTP

source_name: Primary HUVEC, Treated with vehicle for 2 hours before subjecting to polysome profiling

tag: Primary HUVEC cultured on gelatin coated flasks derived from 7 different umbilical cords, isolated as described by Jaffe, et al.  Cells were grown to one day post-confluence before stimulating with thrombin (2 U/mL) or vehicle for 2 hours.


title: 912 - mAdbID:52197

description: mAdb experiment ID: 52197

value: female

value: Follow up years:16.79

value: ECOG performance status:0

value: LDH ratio:0.582

value: Number of nodal sites:1


title: A X105B13

description: Series of 249 tumours

tag: INDEX (ID)

tag: Elston (NGS) histologic grade

tag: Probability 1-like (by SWS classifier)

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

tag: ER+, endocrine therapy only (1=included in survival analysis):

tag: ER status

tag: Lymph node status


title: Thrombin stimulated Monosome Fraction

description: These samples were collected as part of a polysome profiling experiment in which monosome and polysome associated mRNA was collected via centrifugation and fractionation using an Isco fractionator.  This sample is the Thrombin monosome fraction used to calculate a translation index as follows:  (Control polysome/control monosome)/(thrombin polysome/thrombin polysome).

tag: Primary Huvec cultured on gelatin coated flasks derived from 7 different umbilical cords, isolated as described by Jaffe, et al.  Cells were grown to one day post-confluence before stimulating with thrombin (2 U/ml) or vehicle for 2 hours.


title: A X106B55

description: Series of 249 tumours

tag: Genetic grade signature status prediction (by SWS classifier)

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)

tag: No systemic therapy (1=included in survival analysis)

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)

tag: age at diagnosis

tag: tumor size (mm)


title: A X104B91

description: Series of 249 tumours

tag: ER+, endocrine therapy only (1=included in survival analysis)

tag: No systemic therapy (1=included in survival analysis):

value: LN?


title: Control Monosome Fraction

description: These samples were collected as part of a polysome profiling experiment in which monosome and polysome associated mRNA was collected via centrifugation and fractionation using an Isco fractionator.  This sample is the control untranslated fraction used to calculate a translation index as follows:  (Control polysome/control monosome)/(thrombin polysome/thrombin polysome).

treatment_protocol: The control cells from this experiment received 48 microliters of HBSS as a vehicle for thrombin.

tag: Primary HUVEC cultured on gelatin coated flasks derived from 7 different umbilical cords, isolated as described by Jaffe, et al.  Cells were grown to one day post-confluence before stimulating with thrombin or vehicle for 2 hours.


title: A X103B41

description: Series of 249 tumours

tag: INDEX (ID)

tag: Elston (NGS) histologic grade

tag: Probability 1-like (by SWS classifier)

value: ER-

value: LN+


title: A X102B06

description: Series of 249 tumours

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

tag: All patients (1=included in survival analysis)

tag: ER+, endocrine therapy only (1=included in survival analysis):


title: 860 - mAdbID:52195

description: mAdb experiment ID: 52195

tag: Gender

tag: Age

tag: Tissue

value: lymph node

tag: Disease state

tag: Individual

tag: Clinical info

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Follow up status:dead

value: Follow up years:3.03

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:0.77

value: Number of nodal sites:2


title: 871 - mAdbID:52196

description: mAdb experiment ID: 52196

value: male

value: Lymphoma

value: Final pathology diagnosis:Atypical BL

value: Final microarray diagnosis:BL

value: Follow up years:0.41

value: ECOG performance status:1

value: LDH ratio:0.9


title: 310 - mAdbID:52194

description: mAdb experiment ID: 52194

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up status:alive

value: Follow up years:0.97

value: LDH ratio:1.41

value: Number of nodal sites:1


title: 617 - mAdbID:52189

description: mAdb experiment ID: 52189

value: lymph node

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:5.88

value: ECOG performance status:0

value: LDH ratio:0.61

value: Number of nodal sites:0


title: 304 - mAdbID:52190

description: mAdb experiment ID: 52190

value: male

value: Lymphoma

value: Final microarray diagnosis:DLBCL ABC

value: Follow up status:dead

value: Follow up years:1.31

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:1.375


title: A X100B08

description: Series of 249 tumours

tag: Genetic grade signature status prediction (by SWS classifier)

tag: Probability 3-like (by SWS classifier)

tag: DFS TIME (yrs)

tag: No systemic therapy (1=included in survival analysis)

tag: ER status

value: ER+

tag: Lymph node status

value: LN-

tag: p53 seq mut status (p53+=mutant; p53-=wildtype)

tag: age at diagnosis


title: 470 - mAdbID:52188

description: mAdb experiment ID: 52188

value: lymph node

value: Follow up status:alive

value: Follow up years:11.17

value: LDH ratio:2.09

value: Number of nodal sites:1


title: 800 - mAdbID:52337

description: mAdb experiment ID: 52337

value: female

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Follow up years:0.33

value: ECOG performance status:1


title: A X101B88

description: Series of 249 tumours

tag: INDEX (ID)

tag: Elston (NGS) histologic grade

tag: Probability 1-like (by SWS classifier)

tag: DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer

value: ER-

tag: tumor size (mm)


title: 305 - mAdbID:52191

description: mAdb experiment ID: 52191

tag: Gender

value: male

tag: Age

tag: Tissue

value: Lymphoma

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:0.82

value: LDH ratio:-1


title: 306 - mAdbID:52192

description: mAdb experiment ID: 52192

tag: Disease state

tag: Individual

tag: Clinical info

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up years:2.69

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:2


title: 309 - mAdbID:52193

description: mAdb experiment ID: 52193

value: lymph node

value: Follow up status:alive

value: Follow up years:2.79

value: LDH ratio:0.9


title: 1060 - mAdbID:52179

description: mAdb experiment ID: 52179

value: female

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:6.45

value: LDH ratio:1.92

value: Number of nodal sites:2


title: 834 - mAdbID:52186

description: mAdb experiment ID: 52186

value: male

value: Lymphoma

value: Follow up status:dead

value: Follow up years:1.64

value: LDH ratio:0.8

value: Number of nodal sites:1


title: 847 - mAdbID:52187

description: mAdb experiment ID: 52187

value: lymph node

value: Follow up years:4.16

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:1

value: Number of nodal sites:0


title: 803 - mAdbID:52183

description: mAdb experiment ID: 52183

value: female

value: Submitting diagnosis:DLBCL

value: Follow up years:1.45

value: ECOG performance status:2


title: 818 - mAdbID:52184

description: mAdb experiment ID: 52184

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:0.10

value: ECOG performance status:3

value: LDH ratio:1.86


title: 1061 - mAdbID:52180

description: mAdb experiment ID: 52180

value: male

value: Lymphoma

value: Final microarray diagnosis:DLBCL ABC

value: Follow up status:dead

value: Follow up years:1.04

value: LDH ratio:1.04


title: 1058 - mAdbID:52177

description: mAdb experiment ID: 52177

value: lymph node

value: Follow up years:0.42

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:1

value: LDH ratio:1.61

value: Number of nodal sites:1


title: 722 - mAdbID:52181

description: mAdb experiment ID: 52181

value: female

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Follow up status:alive

value: Follow up years:3.32

value: LDH ratio:1.78


title: 1031 - mAdbID:52172

description: mAdb experiment ID: 52172

value: male

value: Lymphoma

value: Follow up years:6.64

value: ECOG performance status:0

value: LDH ratio:0.808

value: Number of nodal sites:0


title: 1057 - mAdbID:52176

description: mAdb experiment ID: 52176

value: lymph node

value: Final microarray diagnosis:DLBCL ABC

value: Follow up status:dead

value: Follow up years:2.13

value: LDH ratio:-1


title: 1059 - mAdbID:52178

description: mAdb experiment ID: 52178

value: Follow up years:2.00

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:2

value: LDH ratio:0.92

value: Number of nodal sites:3


title: 1054 - mAdbID:52174

description: mAdb experiment ID: 52174

value: female

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up status:alive

value: Follow up years:12.34

value: ECOG performance status:1

value: LDH ratio:0.52

value: Number of nodal sites:1


title: 1051 - mAdbID:52173

description: mAdb experiment ID: 52173

value: lymph node

value: Lymphoma

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:dead

value: Follow up years:0.12

value: LDH ratio:10.34


title: 1055 - mAdbID:52175

description: mAdb experiment ID: 52175

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:7.81

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:0.66


title: 1027 - mAdbID:52171

description: mAdb experiment ID: 52171

value: female

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Follow up years:0.25

value: ECOG performance status:2

value: LDH ratio:0.962


title: 1023 - mAdbID:52167

description: mAdb experiment ID: 52167

value: Follow up years:5.57

value: ECOG performance status:1

value: LDH ratio:0.38

value: Number of nodal sites:0


title: 1018 - mAdbID:52165

description: mAdb experiment ID: 52165

value: male

value: lymph node

value: Lymphoma

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up status:dead

value: Follow up years:0.03

value: LDH ratio:5.68

value: Number of nodal sites:2


title: 1026 - mAdbID:52170

description: mAdb experiment ID: 52170

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:6.94

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:0.932

value: Number of nodal sites:1


title: 1024 - mAdbID:52168

description: mAdb experiment ID: 52168

value: female

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL PMBL

value: Follow up status:alive

value: Follow up years:19.83

value: ECOG performance status:1

value: LDH ratio:3.34


title: 1021 - mAdbID:52166

description: mAdb experiment ID: 52166

value: male

value: lymph node

value: Lymphoma

value: Follow up years:14.59

value: LDH ratio:0.946

value: Number of nodal sites:0


title: 1009 - mAdbID:52164

description: mAdb experiment ID: 52164

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:9.68

value: LDH ratio:0.98


title: 1008 - mAdbID:52163

description: mAdb experiment ID: 52163

value: Follow up years:6.46

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:0.48

value: Number of nodal sites:1


title: 1007 - mAdbID:52162

description: mAdb experiment ID: 52162

value: female

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up status:dead

value: Follow up years:2.26

value: ECOG performance status:2

value: LDH ratio:1.01


title: 1001 - mAdbID:52158

description: mAdb experiment ID: 52158

value: male

value: lymph node

value: Lymphoma

value: Follow up years:0.33

value: LDH ratio:0.96


title: 1006 - mAdbID:52161

description: mAdb experiment ID: 52161

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL PMBL

value: Follow up status:alive

value: Follow up years:7.12

value: ECOG performance status:1

value: LDH ratio:1.64


title: 1004 - mAdbID:52159

description: mAdb experiment ID: 52159

value: female

value: Final pathology diagnosis:DLBCL

value: Follow up years:6.72

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:0.62

value: Number of nodal sites:0


title: 795 - mAdbID:52156

description: mAdb experiment ID: 52156

value: male

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:3.43


title: 684 - mAdbID:52155

description: mAdb experiment ID: 52155

value: lymph node

value: Lymphoma

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up status:dead

value: Follow up years:1.92

value: ECOG performance status:2

value: LDH ratio:1.19

value: Number of nodal sites:1


title: 682 - mAdbID:52154

description: mAdb experiment ID: 52154

value: Submitting diagnosis:DLBCL

value: Follow up years:0.11

value: ECOG performance status:1

value: LDH ratio:-1


title: 998 - mAdbID:52157

description: mAdb experiment ID: 52157

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL PMBL

value: Follow up status:alive

value: Follow up years:9.11

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:1.04


title: 683 - mAdbID:52153

description: mAdb experiment ID: 52153

value: male

value: lymph node

value: Lymphoma

value: Follow up years:7.42

value: LDH ratio:0.28


title: 1005 - mAdbID:52160

description: mAdb experiment ID: 52160

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:5.77

value: LDH ratio:0.61

value: Number of nodal sites:0


title: 681 - mAdbID:52152

description: mAdb experiment ID: 52152

value: Submitting diagnosis:DLBCL

value: Follow up years:9.70

value: ECOG performance status:1

value: LDH ratio:1.01

value: Number of nodal sites:1


title: 633 - mAdbID:52150

description: mAdb experiment ID: 52150

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL ABC

value: Follow up status:alive

value: Follow up years:2.02

value: LDH ratio:1.11

value: Number of nodal sites:3


title: 808 - mAdbID:52126

description: mAdb experiment ID: 52126

value: female

value: lymph node

value: Lymphoma

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up status:dead

value: Follow up years:0.37

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:2

value: LDH ratio:0.05


title: 714 - mAdbID:52125

description: mAdb experiment ID: 52125

value: Submitting diagnosis:DLBCL

value: Follow up years:2.45

value: ECOG performance status:1

value: LDH ratio:1


title: 717 - mAdbID:52124

description: mAdb experiment ID: 52124

value: male

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:0.42

value: LDH ratio:4.15


title: 638 - mAdbID:52151

description: mAdb experiment ID: 52151

value: lymph node

value: Final microarray diagnosis:DLBCL PMBL

value: Follow up years:0.70

value: ECOG performance status:0

value: LDH ratio:1.13

value: Number of nodal sites:1


title: 709 - mAdbID:52123

description: mAdb experiment ID: 52123

value: female

value: Lymphoma

value: Follow up status:dead

value: Follow up years:0.47

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:1.44


title: FeSO4.7H2O Time Series, 15 minutes, Array 07121

city: Seattle

first: Michael

middle: Hiroshi

last: Johnson

state: WA

address: 1441 North 34th Street

department: Computational Biology

institute: Institute for Systems Biology

description: control vs. FeSO4 (15 minutes)

hyb_protocol: see Baliga NS, Bjork SJ, Bonneau R, Pan M, Iloanusi C, Kottemann MC, Hood L, DiRuggiero J. Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1.Genome Res. 2004 Jun;14(6):1025-35[optional]

scan_protocol: ScanArray 5000, using Packard BioChip ScanArray software. See the Microarray facility website at ISB for for microarray scanning details

data_processing: AnalyzerDG software for spotfinding. see the Microarray pipeline data management website at ISB for more details

label: Alexa 532

organism: Halobacterium salinarum NRC-1

source_name: Halobacterium NRC-1, control

extract_protocol: Total DNA-free RNA prepared using the Absolutely RNA miniprep kit (Stratagene) and analyzed by PCR to rule out DNA contamination, with Agilent Bioanalyzer to verify integrity, and in the spectrophotometer for quantification.

label: Alexa 647

source_name: Halobacterium NRC-1, 6.0mM FeSO4, 15 minutes

growth_protocol: Mid-log phase (OD600-0.5 - 0.6) Halobacterium NRC-1 culture grown in standard media, innoculated with 6.0mM FeSO4 for 15 minutes when sample collected

tag: Halobacterium NRC-1 grown in standard growth media, exposed to 6.0mM FeSO4 for 15 minutes


title: FeSO4.7H2O Stress Response, Array 04769

description: control vs. FeSO4.7H2O stress response (2.0mM)

growth_protocol: Mid-log phase (OD600-0.5 - 0.6) Halobacterium NRC-1 cultures were exposed for 5 hours to metal concentration.

source_name: Halobacterium NRC-1, FeSO4.7H2O Stress, 2.0mM

label_protocol: see Baliga NS, Bjork SJ, Bonneau R, Pan M, Iloanusi C, Kottemann MC, Hood L, DiRuggiero J. Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1.Genome Res. 2004 Jun;14(6):1025-35[optional]

tag: Halobacterium NRC-1 grown in standard growth media with FeSO4.7H2O at 2.0mM


title: FeSO4.7H2O Time Series, 40 minutes, Array 07113

description: control vs. FeSO4 (40 minutes)

label_protocol: see Baliga NS, Bjork SJ, Bonneau R, Pan M, Iloanusi C, Kottemann MC, Hood L, DiRuggiero J. Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1.Genome Res. 2004 Jun;14(6):1025-35

source_name: Halobacterium NRC-1, 6.0mM FeSO4, 40 minutes

growth_protocol: Mid-log phase (OD600-0.5 - 0.6) Halobacterium NRC-1 culture grown in standard media, innoculated with 6.0mM FeSO4 for 40 minutes when sample collected

tag: Halobacterium NRC-1 grown in standard growth media, exposed to 6.0mM FeSO4 for 40 minutes


title: FeSO4.7H2O Stress Response, Array 04770

description: FeSO4.7H2O stress response (4.0mM) vs. control

source_name: Halobacterium NRC-1, FeSO4.7H2O Stress, 4.0mM

tag: Halobacterium NRC-1 grown in standard growth media with FeSO4.7H2O at 4.0mM

growth_protocol: Mid-log phase (OD600-0.5 - 0.6) Halobacterium NRC-1


title: NiSO4.6H2O Stress Response, Array 08359

description: control vs. NiSO4.6H2O stress response (0.75mM)

label: Alexa 546

source_name: Halobacterium NRC-1, NiSO4.6H2O Stress, 0.75mM

tag: Halobacterium NRC-1 grown in standard growth media with NiSO4.6H2O at 0.75mM


title: ZnSO4.7H2O Stress Response, Array 06725

description: ZnSO4.7H2O stress response (0.005mM) vs. control

source_name: Halobacterium NRC-1, ZnSO4.7H2O Stress, 0.005mM

tag: Halobacterium NRC-1 grown in standard growth media with ZnSO4.7H2O at 0.005mM


title: ZnSO4.7H2O Stress Response, Array 06728

description: control vs. ZnSO4.7H2O stress response (0.01mM)

source_name: Halobacterium NRC-1, ZnSO4.7H2O Stress, 0.01mM

tag: Halobacterium NRC-1 grown in standard growth media with ZnSO4.7H2O at 0.01mM


title: FeSO4.7H2O Time Series, 0 minutes, Array 07107

description: control vs. FeSO4 (0 minutes)

source_name: Halobacterium NRC-1, 6.0mM FeSO4, 0 minutes

growth_protocol: Mid-log phase (OD600-0.5 - 0.6) Halobacterium NRC-1 culture grown in standard media, innoculated with 6.0mM FeSO4 for 0 minutes when sample collected

tag: Halobacterium NRC-1 grown in standard growth media, exposed to 6.0mM FeSO4 for 0 minutes


title: FeSO4.7H2O Stress Response, Array 04768

description: FeSO4.7H2O stress response (2.0mM) vs. control

tag: Halobacterium NRC-1 grown in standard growth media


title: 646 - mAdbID:52119

description: mAdb experiment ID: 52119

value: male

value: Submitting diagnosis:DLBCL

value: Follow up years:2.59

value: LDH ratio:1.87

value: Number of nodal sites:0


title: 710 - mAdbID:52122

description: mAdb experiment ID: 52122

value: lymph node

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:1.08

value: ECOG performance status:1

value: LDH ratio:2.78


title: 652 - mAdbID:52120

description: mAdb experiment ID: 52120

value: female

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:0.01

value: ECOG performance status:2

value: LDH ratio:-1

value: Number of nodal sites:1


title: 645 - mAdbID:52118

description: mAdb experiment ID: 52118

value: male

value: Lymphoma

value: Follow up status:dead

value: Follow up years:6.08

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:0

value: LDH ratio:1.96


title: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout, Set B, 1.0mM Cu, Array 08981

description: control vs. Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout (1.0mM Cu, Set B)

growth_protocol: Mid-log phase (OD600-0.5 - 0.6) Halobacterium NRC-1 culture grown in standard media, innoculated with 6.0mM FeSO4 for 80 minutes when sample collected

tag: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout grown in standard growth media with 1.0mM Cu


title: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout, Set B, 1.0mM Cu, Array 08980

description: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout (1.0mM Cu, Set B) vs. control

growth_protocol: Mid-log phase (OD600-0.5 - 0.6) Halobacterium NRC-1 culture grown in standard media


title: 545 - mAdbID:52117

description: mAdb experiment ID: 52117

value: lymph node

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:1.10

value: LDH ratio:0.68


title: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout, Set A, 1.0mM Cu, Array 08979

description: control vs. Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout (1.0mM Cu, Set A)


title: X192LA (HG-U133A)

city: Stockholm

first: Alexander

last: Ploner

department: Medical Epidemiology and Biostatistics

country: Sweden

institute: Karolinska Institutet

description: Series of 159 tumors

source_name: Breast tumor

tag: Breast tumor tissue

tag: RELAPSE

tag: DEATH

tag: SUBTYPE

tag: ELSTON

tag: See Series GSE1456 record for additional information


title: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout, Set B, 0.85mM Cu, Array 08977

description: control vs. Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout (0.85mM Cu, Set B)

tag: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout grown in standard growth media with 0.85mM Cu


title: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout, Set A, 1.0mM Cu, Array 08978

description: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout (1.0mM Cu, Set A) vs. control


title: 544 - mAdbID:52115

description: mAdb experiment ID: 52115

tag: Gender

tag: Age

tag: Tissue

tag: Disease state

tag: Individual

tag: Clinical info

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:1.31

value: LDH ratio:0.6

value: Number of nodal sites:2


title: 644 - mAdbID:52116

description: mAdb experiment ID: 52116

value: male

value: Follow up years:0.31

value: ECOG performance status:2

value: LDH ratio:1.64

value: Number of nodal sites:0


title: 2017 - mAdbID:52112

description: mAdb experiment ID: 52112

value: Lymphoma

value: Follow up status:dead

value: Follow up years:0.08

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:4.78


title: 2018 - mAdbID:52113

description: mAdb experiment ID: 52113

value: lymph node

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:0.17

value: LDH ratio:1.42


title: 1994 - mAdbID:52110

description: mAdb experiment ID: 52110

value: female

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:1.21

value: ECOG performance status:3

value: LDH ratio:1.09


title: 2001 - mAdbID:52111

description: mAdb experiment ID: 52111

value: male

value: Follow up years:1.32

value: ECOG performance status:0

value: LDH ratio:0.8


title: 1990 - mAdbID:52108

description: mAdb experiment ID: 52108

value: Lymphoma

value: Follow up status:dead

value: Follow up years:0.06

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:1

value: LDH ratio:0.78


title: 810 - mAdbID:52106

description: mAdb experiment ID: 52106

value: lymph node

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:alive

value: Follow up years:11.72

value: LDH ratio:0.56

value: Number of nodal sites:0


title: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout, Set B, 0.7mM Cu, Array 08909

description: control vs. Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout (0.7mM Cu, Set B)

tag: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout grown in standard growth media with 0.7mM Cu


title: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout, Set A, 0.85mM Cu, Array 08974

description: control vs. Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout (0.85mM Cu, Set A)


title: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout, Set B, 0.7mM Cu, Array 08908

description: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout (0.7mM Cu, Set B) vs. control


title: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout, Set B, 0.85mM Cu, Array 08976

description: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout (0.85mM Cu, Set B) vs. control


title: 1991 - mAdbID:52109

description: mAdb experiment ID: 52109

value: male

value: Follow up years:1.01

value: LDH ratio:1.1


title: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout, Set A, 0.7mM Cu, Array 08906

description: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout (0.7mM Cu, Set A) vs. control


title: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout, Set B, 0.0mM Cu, Array 08905

description: control vs. Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout (Set B)

tag: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout grown in standard growth media with 0.0mM Cu


title: Halobacterium NRC-1, ura3 Knockout, sirR Knockout, Set B, 1.5mM MnSO4.H2O, Array 08901

description: control vs. Halobacterium NRC-1, ura3 Knockout, sirR Knockout (1.5mM Mn, Set B)

tag: Halobacterium NRC-1 grown in standard growth media

tag: Halobacterium NRC-1, ura3 Knockout, sirR Knockout grown in standard growth media, exposed to 1.5mM Mn


title: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout, Set A, 0.0mM Cu, Array 08903

description: control vs. Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout (Set A)


title: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout, Set B, 0.0mM Cu, Array 08904

description: Halobacteriumm NRC-1, Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout (Set B) vs. control


title: 797 - mAdbID:52103

description: mAdb experiment ID: 52103

value: female

value: Lymphoma

value: Follow up years:6.87

value: Number of nodal sites:1


title: X079JA (HG-U133A)

description: Series of 159 tumors

tag: Breast tumor tissue

value: Luminal A


title: Halobacterium NRC-1, ura3 Knockout, sirR Knockout, Set B, 1.5mM MnSO4.H2O, Array 08900

description: Halobacterium NRC-1, ura3 Knockout, sirR Knockout (1.5mM Mn, Set B) vs. control


title: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout, Set A, 0.0mM Cu, Array 08902

description: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout (Set A) vs. control


title: Halobacterium NRC-1, ura3 Knockout, sirR Knockout, Set A, 1.5mM MnSO4.H2O, Array 08899

description: control vs. Halobacterium NRC-1, ura3 Knockout, sirR Knockout (1.5mM Mn, Set A)


title: 541 - mAdbID:52100

description: mAdb experiment ID: 52100

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:4.11

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:1

value: LDH ratio:1.83


title: 543 - mAdbID:52101

description: mAdb experiment ID: 52101

value: lymph node

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:alive

value: Follow up years:3.47

value: LDH ratio:0.48


title: X262SP (HG-U133A)

description: Series of 159 tumors

tag: RELAPSE

value: No Subtype


title: 807 - mAdbID:52104

description: mAdb experiment ID: 52104

value: female

value: Lymphoma

value: Follow up status:dead

value: Follow up years:0.31

value: LDH ratio:1.22


title: X216AN (HG-U133A)

description: Series of 159 tumors

tag: DEATH

value: Luminal B


title: Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout, Set A, 0.7mM Cu, Array 08907

description: control vs. Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout (0.7mM Cu, Set A)


title: 533 - mAdbID:52099

description: mAdb experiment ID: 52099

value: male

value: Follow up years:0.71

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:1.01

value: Number of nodal sites:2


title: Halobacterium NRC-1, ura3 Knockout, sirR Knockout, Set B, 1.0mM MnSO4.H2O, Array 08896

description: Halobacterium NRC-1, ura3 Knockout, sirR Knockout (1.0mM Mn, Set B) vs. control

tag: Halobacterium NRC-1, ura3 Knockout, sirR Knockout grown in standard growth media, exposed to 1.0mM Mn


title: Halobacterium NRC-1, ura3 Knockout, sirR Knockout, Set B, 1.0mM MnSO4.H2O, Array 08897

description: control vs. Halobacterium NRC-1, ura3 Knockout, sirR Knockout (1.0mM Mn, Set B)


title: 756 - mAdbID:52098

description: mAdb experiment ID: 52098

value: lymph node

value: Submitting diagnosis:DLBCL

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:7.21

value: ECOG performance status:0

value: Number of nodal sites:1


title: 747 - mAdbID:52097

description: mAdb experiment ID: 52097

value: Lymphoma

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:alive

value: Follow up years:15.41

value: ECOG performance status:1

value: LDH ratio:-1

value: Number of nodal sites:0


title: Halobacterium NRC-1, ura3 Knockout, sirR Knockout, Set A, 1.5mM MnSO4.H2O, Array 08898

description: Halobacterium NRC-1, ura3 Knockout, sirR Knockout (1.5mM Mn, Set A) vs. control


title: 745 - mAdbID:52096

description: mAdb experiment ID: 52096

value: male

value: Follow up status:dead

value: Follow up years:1.33

value: Chemotherapy:CHOP-Like Regimen


title: 874 - mAdbID:52107

description: mAdb experiment ID: 52107

value: lymph node

value: Submitting diagnosis:DLBCL

value: Follow up years:0.12

value: LDH ratio:1.1


title: 675 - mAdbID:52095

description: mAdb experiment ID: 52095

value: Final pathology diagnosis:Atypical BL

value: Final microarray diagnosis:BL

value: Follow up years:6.02

value: LDH ratio:1.06


title: Control Polysome Fraction

description: These samples were collected as part of a polysome profiling experiment in which monosome and polysome associated mRNA was collected via centrifugation and fractionation using an Isco fractionator.  This sample is the control polysome fraction used to calculate a translation index as follows:  (Control polysome/control monosome)/(thrombin polysome/thrombin polysome).

tag: Primary HUVEC cultured on gelatin coated flasks derived from 7 different umbilical cords, isolated as described by Jaffe, et al.  Cells were gron to one day post-confluence before stimulating with thrombin (2 U/ml) or vehicle for 2 hours.


title: Halobacterium NRC-1, ura3 Knockout, sirR Knockout, Set A, 1.0mM MnSO4.H2O, Array 08894

description: Halobacterium NRC-1, ura3 Knockout, sirR Knockout (1.0mM Mn, Set A) vs. control


title: Halobacterium NRC-1, ura3 Knockout, sirR Knockout, Set A, 1.0mM MnSO4.H2O, Array 08895

description: control vs. Halobacterium NRC-1, ura3 Knockout, sirR Knockout (1.0mM Mn, Set A)


title: 674 - mAdbID:52094

description: mAdb experiment ID: 52094

value: female

value: Lymphoma

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:alive

value: Follow up years:7.22

value: LDH ratio:0.775


title: 549 - mAdbID:52090

description: mAdb experiment ID: 52090

value: male

value: Follow up status:dead

value: Follow up years:2.68

value: ECOG performance status:1

value: LDH ratio:-1

value: Number of nodal sites:1


title: Halobacterium NRC-1, ura3 Knockout, sirR Knockout, Set B, 0.8mM MnSO4.H2O, Array 08892

description: Halobacterium NRC-1, ura3 Knockout, sirR Knockout (0.8mM Mn, Set B) vs. control

tag: Halobacterium NRC-1, ura3 Knockout, sirR Knockout grown in standard growth media, exposed to 0.8mM Mn


title: 854 - mAdbID:52088

description: mAdb experiment ID: 52088

value: lymph node

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up years:1.51

value: LDH ratio:0.82

value: Number of nodal sites:2


title: 572 - mAdbID:52093

description: mAdb experiment ID: 52093

value: female

value: Lymphoma

value: Final pathology diagnosis:DLBCL

value: Follow up years:14.24

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:0

value: LDH ratio:0.88


title: 744 - mAdbID:52086

description: mAdb experiment ID: 52086

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:alive

value: Follow up years:8.86

value: Number of nodal sites:0


title: Halobacterium NRC-1, ura3 Knockout, sirR Knockout, Set A, 0.8mM MnSO4.H2O, Array 08890

description: Halobacterium NRC-1, ura3 Knockout, sirR Knockout (0.8mM Mn, Set A) vs. control


title: 841 - mAdbID:52087

description: mAdb experiment ID: 52087

value: male

value: lymph node

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:10.14

value: ECOG performance status:1

value: LDH ratio:2.56


title: Halobacterium NRC-1, ura3 Knockout, sirR Knockout, Set B, 0.0mM MnSO4.H2O, Array 08889

description: control vs. Halobacterium NRC-1, ura3 Knockout, sirR Knockout (0.0mM Mn, Set B)

tag: Halobacterium NRC-1, ura3 Knockout, sirR Knockout grown in standard growth media, exposed to 0.0mM Mn


title: Halobacterium NRC-1, ura3 Knockout, sirR Knockout, Set A, 0.8mM MnSO4.H2O, Array 08891

description: control vs. Halobacterium NRC-1, ura3 Knockout, sirR Knockout (0.8mM Mn, Set A)


title: Halobacterium NRC-1, ura3 Knockout, sirR Knockout, Set A, 0.0mM MnSO4.H2O, Array 08886

description: Halobacterium NRC-1, ura3 Knockout, sirR Knockout (0.0mM Mn, Set A) vs. control


title: 565 - mAdbID:52092

description: mAdb experiment ID: 52092

tag: Gender

value: Submitting diagnosis:DLBCL

value: Follow up status:dead

value: Follow up years:9.11

value: LDH ratio:1.15

value: Number of nodal sites:1


title: Halobacterium NRC-1, ura3 Knockout, Set B, 1.0mM Cu, Array 08884

description: Halobacterium NRC-1, ura3 Knockout (1.0mM Cu, Set B) vs. control

tag: Halobacterium NRC-1, ura3 Knockout grown in standard growth media with 1.0mM Cu


title: Halobacterium NRC-1, ura3 Knockout, sirR Knockout, Set B, 0.0mM MnSO4.H2O, Array 08888

description: Halobacterium NRC-1, ura3 Knockout, sirR Knockout (0.0mM Mn, Set B) vs. control


title: 712 - mAdbID:52084

description: mAdb experiment ID: 52084

tag: Age

tag: Tissue

value: Lymphoma

value: Final pathology diagnosis:DLBCL

value: Follow up years:3.26

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:2

value: LDH ratio:-1


title: Halobacterium NRC-1, ura3 Knockout, sirR Knockout, Set A, 0.0mM MnSO4.H2O, Array 08887

description: control vs. Halobacterium NRC-1, ura3 Knockout, sirR Knockout (0.0mM Mn, Set A)


title: Halobacterium NRC-1, ura3 Knockout, Set A, 1.0mM Cu, Array 08882

description: Halobacterium NRC-1, ura3 Knockout (1.0mM Cu, Set A) vs. control


title: 742 - mAdbID:52085

description: mAdb experiment ID: 52085

value: male

tag: Disease state

tag: Individual

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:alive

value: Follow up years:4.09

value: LDH ratio:0.5

value: Number of nodal sites:0


title: Halobacterium NRC-1, ura3 Knockout, Set B, 0.85mM Cu, Array 08879

description: control vs. Halobacterium NRC-1, ura3 Knockout (0.85mM Cu, Set B)

tag: Halobacterium NRC-1, ura3 Knockout grown in standard growth media with 0.85mM Cu


title: Halobacterium NRC-1, ura3 Knockout, sirR Knockout, Set B, 0.8mM MnSO4.H2O, Array 08893

description: control vs. Halobacterium NRC-1, ura3 Knockout, sirR Knockout (0.8mM Mn, Set B)


title: Halobacterium NRC-1, ura3 Knockout, Set B, 1.0mM Cu, Array 08885

description: control vs. Halobacterium NRC-1, ura3 Knockout (1.0mM Cu, Set B)


title: X119AN (HG-U133A)

description: Series of 159 tumors

tag: SUBTYPE

value: Luminal A

tag: ELSTON

tag: See Series GSE1456 record for additional information


title: 711 - mAdbID:52083

description: mAdb experiment ID: 52083

value: female

value: lymph node

tag: Clinical info

value: Submitting diagnosis:DLBCL

value: Follow up status:dead

value: Follow up years:3.93

value: ECOG performance status:3

value: LDH ratio:0.4


title: Halobacterium NRC-1, ura3 Knockout, Set A, 1.0mM Cu, Array 08883

description: control vs. Halobacterium NRC-1, ura3 Knockout (1.0mM Cu, Set A)

tag: Halobacterium NRC-1 grown in standard growth media


title: Halobacterium NRC-1, ura3 Knockout, Set B, 0.85mM Cu, Array 08878

description: Halobacterium NRC-1, ura3 Knockout (0.85mM Cu, Set B) vs. control


title: Halobacterium NRC-1, ura3 Knockout, Set A, 0.85mM Cu, Array 08877

description: control vs. Halobacterium NRC-1, ura3 Knockout (0.85mM Cu, Set A)


title: Halobacterium NRC-1, ura3 Knockout, Set A, 0.85mM Cu, Array 08876

description: Halobacterium NRC-1, ura3 Knockout (0.85mM Cu, Set A) vs. control


title: Halobacterium NRC-1, ura3 Knockout, Set B, 0.7mM Cu, Array 08875

description: control vs. Halobacterium NRC-1, ura3 Knockout (0.7mM Cu, Set B)

tag: Halobacterium NRC-1, ura3 Knockout grown in standard growth media with 0.7mM Cu


title: 704 - mAdbID:52082

description: mAdb experiment ID: 52082

value: Lymphoma

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:9.67

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:1


title: 577 - mAdbID:52102

description: mAdb experiment ID: 52102

value: male

value: Follow up status:alive

value: Follow up years:1.65

value: ECOG performance status:0

value: LDH ratio:0.67

value: Number of nodal sites:1


title: 695 - mAdbID:52081

description: mAdb experiment ID: 52081

value: lymph node

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:0.15

value: LDH ratio:0.77


title: 694 - mAdbID:52080

description: mAdb experiment ID: 52080

value: Lymphoma

value: Follow up years:4.83

value: LDH ratio:0.68

value: Number of nodal sites:0


title: 689 - mAdbID:52079

description: mAdb experiment ID: 52079

value: female

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL ABC

value: Follow up status:dead

value: Follow up years:2.54

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:3

value: LDH ratio:1.01


title: Halobacterium NRC-1, ura3 Knockout, Set A, 0.7mM Cu, Array 08873

description: control vs. Halobacterium NRC-1, ura3 Knockout (0.7mM Cu, Set A)


title: 671 - mAdbID:52075

description: mAdb experiment ID: 52075

value: male

value: lymph node

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up status:alive

value: Follow up years:3.35

value: ECOG performance status:1

value: LDH ratio:0.74

value: Number of nodal sites:1


title: Halobacterium NRC-1, ura3 Knockout, Set B, 0.7mM Cu, Array 08874

description: Halobacterium NRC-1, ura3 Knockout (0.7mM Cu, Set B) vs. control


title: Halobacterium NRC-1, ura3 Knockout, Set B, 1.5mM Mn, Array 08871

description: control vs. Halobacterium NRC-1, ura3 Knockout (1.5mM Mn, Set B)

tag: Halobacterium NRC-1, ura3 Knockout grown in standard growth media with 1.5mM Mn


title: 687 - mAdbID:52077

description: mAdb experiment ID: 52077

value: Lymphoma

value: Submitting diagnosis:DLBCL

value: Follow up years:0.94

value: LDH ratio:3.99


title: 669 - mAdbID:52074

description: mAdb experiment ID: 52074

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:7.11

value: LDH ratio:0.68


title: 688 - mAdbID:52078

description: mAdb experiment ID: 52078

value: female

value: Follow up status:dead

value: Follow up years:0.33

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:0.78

value: Number of nodal sites:0


title: 672 - mAdbID:52076

description: mAdb experiment ID: 52076

value: lymph node

value: Follow up status:alive

value: Follow up years:6.78

value: ECOG performance status:1

value: LDH ratio:0.49


title: 553 - mAdbID:52091

description: mAdb experiment ID: 52091

value: male

value: Lymphoma

value: Submitting diagnosis:DLBCL

value: Follow up years:0.82

value: ECOG performance status:0

value: LDH ratio:1.12

value: Number of nodal sites:1


title: 668 - mAdbID:52073

description: mAdb experiment ID: 52073

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:6.44

value: LDH ratio:1.68


title: 664 - mAdbID:52072

description: mAdb experiment ID: 52072

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up status:dead

value: Follow up years:0.62

value: ECOG performance status:2

value: LDH ratio:1.05


title: 663 - mAdbID:52071

description: mAdb experiment ID: 52071

value: lymph node

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:1

value: LDH ratio:0.99


title: 661 - mAdbID:52058

description: mAdb experiment ID: 52058

value: male

value: Lymphoma

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:0.56

value: LDH ratio:0.66


title: Halobacterium NRC-1, ura3 Knockout, Set A, 0.7mM Cu, Array 08872

description: Halobacterium NRC-1, ura3 Knockout (0.7mM Cu, Set A) vs. control


title: Halobacterium NRC-1, ura3 Knockout, Set B, 1.5mM Mn, Array 08870

description: Halobacterium NRC-1, ura3 Knockout (1.5mM Mn, Set B) vs. control


title: Halobacterium NRC-1, ura3 Knockout, Set A, 1.5mM Mn, Array 08868

description: Halobacterium NRC-1, ura3 Knockout (1.5mM Mn, Set A) vs. control


title: Halobacterium NRC-1, ura3 Knockout, Set B, 1.0mM Mn, Array 08867

description: control vs. Halobacterium NRC-1, ura3 Knockout (1.0mM Mn, Set B)

tag: Halobacterium NRC-1, ura3 Knockout grown in standard growth media with 1.0mM Mn


title: Halobacterium NRC-1, ura3 Knockout, Set B, 1.0mM Mn, Array 08866

description: Halobacterium NRC-1, ura3 Knockout (1.0mM Mn, Set B) vs. control


title: Halobacterium NRC-1, ura3 Knockout, Set A, 1.5mM Mn, Array 08869

description: control vs. Halobacterium NRC-1, ura3 Knockout (1.5mM Mn, Set A)


title: 523 - mAdbID:52056

description: mAdb experiment ID: 52056

value: female

value: Final pathology diagnosis:DLBCL

value: Follow up status:alive

value: Follow up years:8.36

value: ECOG performance status:0

value: Number of nodal sites:1


title: Halobacterium NRC-1, ura3 Knockout, Set A, 1.0mM Mn, Array 08865

description: control vs. Halobacterium NRC-1, ura3 Knockout (1.0mM Mn, Set A)


title: Halobacterium NRC-1, ura3 Knockout, Set A, 1.0mM Mn, Array 08864

description: Halobacterium NRC-1, ura3 Knockout (1.0mM Mn, Set A) vs. control


title: X191SA (HG-U133A)

description: Series of 159 tumors

tag: Breast tumor tissue

tag: RELAPSE

tag: DEATH

value: Basal


title: 654 - mAdbID:52016

description: mAdb experiment ID: 52016

tag: Gender

value: lymph node

value: Final pathology diagnosis:Atypical BL

value: Final microarray diagnosis:BL

value: Follow up years:7.37

value: LDH ratio:0.375


title: 479 - mAdbID:52017

description: mAdb experiment ID: 52017

tag: Age

value: Lymphoma

value: Follow up years:7.24

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:0.76

value: Number of nodal sites:0


title: 517 - mAdbID:52018

description: mAdb experiment ID: 52018

value: male

tag: Tissue

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:dead

value: Follow up years:3.03

value: ECOG performance status:1

value: LDH ratio:-1


title: 660 - mAdbID:52057

description: mAdb experiment ID: 52057

value: female

value: lymph node

tag: Disease state

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:0.20

value: LDH ratio:1

value: Number of nodal sites:1


title: Halobacterium NRC-1, ura3 Knockout, Set B, 0.8mM Mn, Array 08862

description: Halobacterium NRC-1, ura3 Knockout (0.8mM Mn, Set B) vs. control

tag: Halobacterium NRC-1, ura3 Knockout grown in standard growth media with 0.8mM Mn


title: 482 - mAdbID:52013

description: mAdb experiment ID: 52013

value: Lymphoma

tag: Individual

value: Follow up status:alive

value: Follow up years:7.72

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:0


title: Halobacterium NRC-1, ura3 Knockout, Set B, 0.8mM Mn, Array 08863

description: control vs. Halobacterium NRC-1, ura3 Knockout (0.8mM Mn, Set B)


title: Halobacterium NRC-1, ura3 Knockout, Set A, 0.8mM Mn, Array 08861

description: control vs. Halobacterium NRC-1, ura3 Knockout (0.8mM Mn, Set A)


title: 615 - mAdbID:52014

description: mAdb experiment ID: 52014

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up years:4.94

value: ECOG performance status:2

value: LDH ratio:1.24

value: Number of nodal sites:0


title: Halobacterium NRC-1, ura3 Knockout, Set B, Array 08858

description: Halobacterium NRC-1, ura3 Knockout (Set B) vs. control

tag: Halobacterium NRC-1, ura3 Knockout grown in standard growth media


title: Halobacterium NRC-1, ura3 Knockout, Set A, 0.8mM Mn, Array 08860

description: Halobacterium NRC-1, ura3 Knockout (0.8mM Mn, Set A) vs. control


title: Halobacterium NRC-1, ura3 Knockout, Set B, Array 08859

description: control vs. Halobacterium NRC-1, ura3 Knockout (Set B)


title: Halobacterium NRC-1, ura3 Knockout, Set A, Array 08857

description: control vs. Halobacterium NRC-1, ura3 Knockout (Set A)


title: 616 - mAdbID:52015

description: mAdb experiment ID: 52015

value: female

value: lymph node

value: Follow up status:dead

value: Follow up years:0.99

value: ECOG performance status:1

value: LDH ratio:0.466


title: 618 - mAdbID:52012

description: mAdb experiment ID: 52012

value: male

value: Lymphoma

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:5.65

value: LDH ratio:0.94

value: Number of nodal sites:1


title: Halobacterium NRC-1, ura3 Knockout, Set A, Array 08856

description: Halobacterium NRC-1, ura3 Knockout (Set A) vs. control


title: 432 - mAdbID:52011

description: mAdb experiment ID: 52011

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:0.38

value: Chemotherapy:CHOP-Like Regimen

value: LDH ratio:-1


title: 2,2 Dipyridyl Stress Response, Array 08403

description: 2,2 Dipyridyl stress response (0.25mM) vs. control

source_name: Halobacterium NRC-1, 2,2 Dipyridyl Stress, 0.25mM

tag: Halobacterium NRC-1 grown in standard growth media with 2,2 Dipyridyl at 0.25mM


title: 433 - mAdbID:52010

description: mAdb experiment ID: 52010

value: lymph node

value: Follow up years:0.76


title: 619 - mAdbID:52005

description: mAdb experiment ID: 52005

value: female

value: Follow up status:alive

value: Follow up years:8.76

value: LDH ratio:1.32

value: Number of nodal sites:2


title: 412 - mAdbID:52009

description: mAdb experiment ID: 52009

value: Lymphoma

value: Final pathology diagnosis:DLBCL

value: Follow up years:12.12

value: ECOG performance status:0

value: LDH ratio:1.25


title: 446 - mAdbID:52004

description: mAdb experiment ID: 52004

value: male

value: Submitting diagnosis:DLBCL

value: Follow up status:dead

value: Follow up years:2.82

value: LDH ratio:0.68

value: Number of nodal sites:0


title: 626 - mAdbID:52007

description: mAdb experiment ID: 52007

value: lymph node

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:2.49

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:1

value: LDH ratio:0.74


title: 413 - mAdbID:52008

description: mAdb experiment ID: 52008

value: Lymphoma

value: Follow up years:0.60

value: LDH ratio:6.13

value: Number of nodal sites:2


title: 627 - mAdbID:52006

description: mAdb experiment ID: 52006

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:1.27

value: LDH ratio:0.49

value: Number of nodal sites:1


title: 528 - mAdbID:52001

description: mAdb experiment ID: 52001

value: male

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up status:alive

value: Follow up years:1.64

value: LDH ratio:0.85


title: 529 - mAdbID:52002

description: mAdb experiment ID: 52002

value: lymph node

value: Follow up status:dead

value: Follow up years:1.06

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:1

value: LDH ratio:1.37


title: 537 - mAdbID:52003

description: mAdb experiment ID: 52003

value: Lymphoma

value: Final pathology diagnosis:DLBCL

value: Follow up years:4.99

value: LDH ratio:-1

value: Number of nodal sites:3


title: 547 - mAdbID:52089

description: mAdb experiment ID: 52089

value: female

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:0.05

value: Number of nodal sites:4


title: 836 - mAdbID:52000

description: mAdb experiment ID: 52000

value: male

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:alive

value: Follow up years:4.29

value: ECOG performance status:2

value: LDH ratio:0.62

value: Number of nodal sites:1


title: 2,2 Dipyridyl Stress Response, Array 08390

description: 2,2 Dipyridyl stress response (0.1mM) vs. control

source_name: Halobacterium NRC-1, 2,2 Dipyridyl Stress, 0.1mM

tag: Halobacterium NRC-1 grown in standard growth media with 2,2 Dipyridyl at 0.1mM


title: 2,2 Dipyridyl Stress Response, Array 08389

description: control vs. 2,2 Dipyridyl stress response (0.025mM)

source_name: Halobacterium NRC-1, 2,2 Dipyridyl Stress, 0.025mM

tag: Halobacterium NRC-1 grown in standard growth media with 2,2 Dipyridyl at 0.025mM


title: 462 - mAdbID:51999

description: mAdb experiment ID: 51999

value: lymph node

value: Lymphoma

tag: Clinical info

value: Follow up status:dead

value: Follow up years:7.49

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:1

value: Number of nodal sites:0


title: 2,2 Dipyridyl Stress Response, Array 08391

description: control vs. 2,2 Dipyridyl stress response (0.1mM)

tag: Halobacterium NRC-1 grown in standard growth media


title: CoSO4.7H2O Stress Response, Array 08366

description: cobalt stress response (0.5mM) vs. control

source_name: Halobacterium NRC-1, CoSO4.7H2O Stress, 0.5mM

tag: Halobacterium NRC-1 grown in standard growth media with CoSO4.7H2O at 0.5mM


title: 438 - mAdbID:51998

description: mAdb experiment ID: 51998

value: Final pathology diagnosis:DLBCL

value: Follow up years:8.15

value: ECOG performance status:0

value: LDH ratio:1.51

value: Number of nodal sites:2


title: 2,2 Dipyridyl Stress Response, Array 08388

description: 2,2 Dipyridyl stress response (0.025mM) vs. control


title: CoSO4.7H2O Stress Response, Array 08367

description: control vs. cobalt stress response (0.5mM)

label_protocol:
see Baliga NS, Bjork SJ, Bonneau R, Pan M, Iloanusi C, Kottemann MC, Hood L, DiRuggiero J. Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1.Genome Res. 2004 Jun;14(6):1025-35[optional]
see Baliga NS, Bjork SJ, Bonneau R, Pan M, Iloanusi C, Kottemann MC, Hood L, DiRuggiero J. Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1.Genome Res. 2004 Jun;14(6):1025-35


title: 2,2 Dipyridyl Stress Response, Array 08393


title: NiSO4.6H2O Stress Response, Array 08361

description: control vs. NiSO4.6H2O stress response (1.5mM)

source_name: Halobacterium NRC-1, NiSO4.6H2O Stress, 1.5mM

tag: Halobacterium NRC-1 grown in standard growth media with NiSO4.6H2O at 1.5mM


title: 832 - mAdbID:51997

description: mAdb experiment ID: 51997

value: male

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up status:alive

value: Follow up years:4.01

value: LDH ratio:0.64


title: 831 - mAdbID:51996

description: mAdb experiment ID: 51996

value: lymph node

value: Lymphoma

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up years:11.02

value: LDH ratio:1.41

value: Number of nodal sites:1


title: CoSO4.7H2O Stress Response, Array 08362

description: cobalt stress response (0.2mM) vs. control

source_name: Halobacterium NRC-1, CoSO4.7H2O Stress, 0.2mM

tag: Halobacterium NRC-1 grown in standard growth media with CoSO4.7H2O at 0.2mM


title: 524 - mAdbID:51993

description: mAdb experiment ID: 51993

value: female

value: Final pathology diagnosis:DLBCL

value: Follow up years:5.88

value: Chemotherapy:CHOP-Like Regimen

value: Number of nodal sites:0


title: CoSO4.7H2O Stress Response, Array 08363

description: control vs. cobalt stress response (0.2mM)


title: NiSO4.6H2O Stress Response, Array 08360

description: NiSO4.6H2O stress response (1.5mM) vs. control


title: 449 - mAdbID:51995

description: mAdb experiment ID: 51995

value: male

value: Follow up years:9.16

value: ECOG performance status:0

value: LDH ratio:0.72


title: CoSO4.7H2O Stress Response, Array 08365

description: control vs. cobalt stress response (0.3mM)

source_name: Halobacterium NRC-1, CoSO4.7H2O Stress, 0.3mM

tag: Halobacterium NRC-1 grown in standard growth media with CoSO4.7H2O at 0.3mM


title: CoSO4.7H2O Stress Response, Array 08364

description: cobalt stress response (0.3mM) vs. control

source_name: Halobacterium NRC-1, control


title: 481 - mAdbID:51992

description: mAdb experiment ID: 51992

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL ABC

value: Follow up status:alive

value: Follow up years:10.75

value: ECOG performance status:2

value: LDH ratio:0.82

value: Number of nodal sites:2


title: 839 - mAdbID:51991

description: mAdb experiment ID: 51991

value: lymph node

value: Lymphoma

value: Follow up status:dead

value: Follow up years:0.29

value: LDH ratio:2

value: Number of nodal sites:3


title: 458 - mAdbID:51990

description: mAdb experiment ID: 51990

value: female

value: Final pathology diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL UNCLASSIFIED

value: Follow up years:1.18

value: ECOG performance status:1


title: 424 - mAdbID:51989

description: mAdb experiment ID: 51989

value: Submitting diagnosis:DLBCL

value: Final microarray diagnosis:DLBCL GCB

value: Follow up years:10.62

value: Chemotherapy:CHOP-Like Regimen

value: ECOG performance status:3

value: LDH ratio:1.54


title: 835 - mAdbID:51988

description: mAdb experiment ID: 51988

value: lymph node

value: Final microarray diagnosis:DLBCL ABC

value: Follow up years:1.22

value: ECOG performance status:2

value: LDH ratio:1.9

value: Number of nodal sites:2


title: 838 - mAdbID:51987

description: mAdb experiment ID: 51987

value: male

value: Lymphoma

value: Follow up status:dead

value: Follow up years:0.00

value: Number of nodal sites:1


title: FeSO4.7H2O Time Series, 5 minutes, Array 07129

description: FeSO4 (5 minutes) vs. control

source_name: Halobacterium NRC-1, 6.0mM FeSO4, 5 minutes

growth_protocol: Mid-log phase (OD600-0.5 - 0.6) Halobacterium NRC-1 culture grown in standard media, innoculated with 6.0mM FeSO4 for 5 minutes when sample collected

tag: Halobacterium NRC-1 grown in standard growth media, exposed to 6.0mM FeSO4 for 5 minutes


title: NiSO4.6H2O Stress Response, Array 08358

description: NiSO4.6H2O stress response (0.75mM) vs. control

tag: Halobacterium NRC-1 grown in standard growth media with NiSO4.6H2O at 0.75mM