title: EDL-t7-2; transgenic extensor digitorum longus 7 month

description: Transgenic for alpha tropomyosin slow, snap frozen, extensor digitorum longus muscle, 7month age animal

source_name: extensor digitorum longus muscle

tag: Transgenic, snap frozen, extensor digitorum longus muscle, 7 month age animal


title: EDL-n7-2; normal extensor digitorum longus 7 month

status: Public on Jul 21 2006

type: RNA

city: Athens

first: Despina

last: Sanoudou

address: Soranou Efesiou 4

department: Molecular Biology

country: Greece

institute: Foundation for Biomedical Research, Academy of Athens

description: Wild type, snap frozen, extensor digitorum longus muscle, 7month age animal

hyb_protocol: standard Affymetrix procedures

scan_protocol: standard Affymetrix procedures

data_processing: Affymetrix Microarray Suite version 5.0

label: biotin

molecule: total RNA

organism: Mus musculus

label_protocol: Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.

extract_protocol: Standard Trizol protocol extraction. Total RNA pools from 3-5 mice were processed and hybridized to each microarray.


title: EDL-n7; normal extensor digitorum longus 7 month

tag: Wild type, snap frozen, extensor digitorum longus muscle, 7month age animal


title: EDL-n10; normal extensor digitorum longus 10 month

description: Wild type, snap frozen, extensor digitorum longus muscle, 10 month age animal


title: DIA-t10; transgenic diaphragm 10 month

description: Transgenic for alpha tropomyosin slow, snap frozen, diaphragm muscle,10 month age animal

source_name: diaphram muscle

tag: Transgenic, snap frozen, diaphragm muscle, 10 month age animal


title: EDL-t7; transgenic extensor digitorum longus 7 month


title: wild type 2 cell embryo rep4

city: Philadelphia

first: Hua

last: Pan

state: PA

address: 415 S University Avenue

department: Department of Biology

country: USA

institute: University of Pennsylvania

description: Wild type whole embryo

source_name: wild type 2 cell embryo rep4

label_protocol: total RNA from 20 embryos was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.

extract_protocol: Total RNA from 20 embryos was extracted and purified using an Picopure kit (Arcturus).

tag: in vivo,2 cell stage, embryo


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 76

city: Tucson

first: Niranjan

last: Maitra

state: AZ

address: 1501 North Campbell Avenue

department: Sarver Heart Center

institute: University of Arizona

description: Rats after ligation of the left anterior descending coronary artery were used as a model of heart failure. Four groups of animals were studied using microarrays. Here, heart failure animals were compared with heart failure animals treated with DITPA and Captopril

data_processing: The data ratio was normalized using a location and intensity dependent Lowess formula

molecule: polyA RNA

organism: Rattus norvegicus

source_name: Infarcted rat left ventricle treated with DITPA and Captopril

source_name: Infarcted rat left ventricle

tag: Infarcted rat left ventricle


title: DIA-t7-2; transgenic diaphragm 7 month

description: Transgenic for alpha tropomyosin slow, snap frozen, diaphragm muscle, 7month age animal

tag: Transgenic, snap frozen, diaphragm muscle, 7month age animal


title: DIA-t10-2; transgenic diaphragm 10 month


title: DIA-n10-2; normal diaphragm 10 month

description: Wild type, snap frozen, diaphragm muscle, 10 month age animal


title: DIA-n10; normal diaphragm 10 month

tag: Wild type, snap frozen, diaphragm muscle,10 month age animal


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 63

description: Rats after ligation of the left anterior descending coronary artery were used as a model of heart failure. Four groups of animals were studied using microarrays. Here, heart failure animals were compared with heart failure animals treated with DITPA

source_name: Infarcted rat left ventricle treated with DITPA


title: wild type 2 cell embryo rep1

description: Wild type whole embryo

source_name: wild type 2 cell embryo rep1


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 61

tag: Infarcted rat left ventricle treated with DITPA


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 74

tag: Infarcted rat left ventricle treated with DITPA and Captopril


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 64


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 75


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 62


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 73


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 59


title: DIA-n7-2; normal diaphragm 7 month

description: Wild type, snap frozen, diaphragm muscle, 7month age animal


title: Mac1/B220_to_ B220

status: Public on Jul 20 2006

city: Heidelberg

first: Hendrik

last: Reuter

department: Moleculare Genetics B060

country: Germany

institute: DKFZ

description: aRNA produced by T7 amplification was reversely transcribed and subsequently labeled using Klenow fragment and Cy-dUTPs. Hybridization was carried out at 37 °C in UltraHyb buffer (Ambion) on a GeneTAC hybridization station (Genomic Solutions).

data_processing: spot replicates were averaged. Spots not recognized by the image analysis software

source_name: 2µg total RNA from Mac1/B220 sorted cells of the CALM/AF10-mouse model, amplified and labeled using TAcKLE Protocol (PMID: 15718295).

tag: Mac1/B220 sorted cells of a CALM/AF10-mouse model derived by retrovirally transduced bone marrow transplantation

source_name: 2µg total RNA from B220 sorted cells of the CALM/AF10-mouse model, amplified and labeled using TAcKLE Protocol (PMID: 15718295).


title: Mac1_to_B220

source_name: 2µg total RNA from Mac1 sorted cells of the CALM/AF10-mouse model, amplified and labeled using TAcKLE Protocol (PMID: 15718295).

tag: Mac1 sorted cells of a CALM/AF10-mouse model derived by retrovirally transduced bone marrow transplantation

tag: B220 sorted cells of a CALM/AF10-mouse model derived by retrovirally transduced bone marrow transplantation


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 60


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 57


title: DIA-n7; normal diaphragm 7 month

tag: Wild type, snap frozen, diaphragm muscle, 7month age animal


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 53

description: Rats after ligation of the left anterior descending coronary artery were used as a model of heart failure. Four groups of animals were studied using microarrays. Here, sham operated animals were compared with the heart failure animals.

source_name: Sham (Control)

tag: Sham operated rat left ventricle


title: Intact 30Gy X-ray treated planaria 30GY2DB

status: Public on Jul 19 2006

city: Pisa

first: Leonardo

last: Rossi

address: Via Volta 4

department: Morfologia Umana e Biologia Applicata

country: Italy

institute: University of Pisa

description: GenePix Pro 4.0 software (Axon Instruments) was used to retrive raw epression data on both channels

scan_protocol: Hybridized arrays were scanned at 10 μm resolution on a GenePix 4000 scanner at variable PMT voltage to obtain maximal signal intensities with less than 1% probe saturation.

data_processing: Data were normalized using the ?median ratio over entire array equal to 1? method using BRB-ArrayTools software version 3.2 developed by the Biometric Research Branch of the National Cancer Institute (http://linus.nci.nih.gov/~brb/). The spots with diameter<25 ?m, intensity <200 in both channel and missing value > 30% of all experiments were excluded from further analysis

organism: Dugesia japonica

source_name: Intact 30Gy X-ray treated planaria

label_protocol: 3 ?g of aRNA were directly labeled by using the non enzymatic method ULS? aRNA labeling kit (Kreatech) following the manufacturer?s protocol

extract_protocol: Nucleospin RNA II Kit (Macherey-Nagel)

tag: Intact, 30Gy X-ray treated, sacrificed 2 days after the treatment

source_name: constant reference

extract_protocol: guanidium thiocyanate/CsCl method

tag: pool of 50 untreated planarians


title: Intact 30Gy X-ray treated planaria 30GY3DB

tag: Intact, 30Gy X-ray treated, sacrificed 3 days after the treatment


title: Intact 30Gy X-ray treated planaria 30GY2DA


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 52

source_name: Sham


title: Intact 30Gy X-ray treated planaria 30GY1DA

tag: Intact, 30Gy X-ray treated, sacrificed 1 day after the treatment


title: Intact 30Gy X-ray treated planaria 30GY1DB


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 58


title: Intact 30Gy X-ray treated planaria 30GY1DC


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 56


title: Intact 5Gy X-ray treated planaria 5GY7DC

source_name: Intact 5Gy X-ray treated planaria

tag: Intact, 5Gy X-ray treated, sacrificed 7 days after the treatment


title: Intact 30Gy X-ray treated planaria 30GY2DC


title: Intact 30Gy X-ray treated planaria 30GY7DB

tag: Intact, 30Gy X-ray treated, sacrificed 7 days after the treatment


title: Intact 30Gy X-ray treated planaria 30GY3DC


title: Intact 30Gy X-ray treated planaria 30GY4DB

tag: Intact, 30Gy X-ray treated, sacrificed 4 days after the treatment


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 55

tag: Infarcted rat left ventricle


title: DIA-t7; transgenic diaphragm 7 month

tag: Transgenic, snap frozen, diaphragm muscle, 7 month age animal


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 49

description: Rats after ligation of the left anterior descending coronary artery were used as a model of heart failure. Four groups of animals were studied using microarrays. Here, sham operated animals were compared with the heart failure animals


title: Intact 5Gy X-ray treated planaria 5GY7DA


title: Intact 30Gy X-ray treated planaria 30GY4DA


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 54


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 51


title: Effect of drugs, DITPA and Captopril on rat heart failure-File 50


title: Intact 5Gy X-ray treated planaria 5GY4DC

tag: Intact, 5Gy X-ray treated, sacrificed 4 days after the treatment


title: Intact 5Gy X-ray treated planaria 5GY3DA

tag: Intact, 5Gy X-ray treated, sacrificed 3 days after the treatment


title: Intact 5Gy X-ray treated planaria 5GY4DB


title: Intact 5Gy X-ray treated planaria 5GY4DA


title: Intact untreated planaria UNTR6

source_name: intact untreated planaria

tag: intact untreated


title: Intact 5Gy X-ray treated planaria 5GY3DC


title: Intact untreated planaria UNTR3


title: Intact untreated planaria UNTR2

label_protocol: 3 µg of aRNA were directly labeled by using the non enzymatic method ULS? aRNA labeling kit (Kreatech) following the manufacturer?s protocol


title: Intact untreated planaria UNTR5


title: Intact untreated planaria UNTR4


title: Estrogen treated ipsilateral to stroke E6IC-1a

status: Public on Jul 18 2006

city: Portland

first: Nabil

middle: J.

last: Alkayed

state: OR

address: 3181 S.W. Sam Jackson Pk. Rd., UHS-2

department: Anesthesiology & Peri-Operative Medicine

institute: Oregon Health & Science University

description: affy original enzo kit processing

data_processing: global scaling to TGT 150

source_name: Cortex

tag: estrogen treated ipsilateral to stroke


title: Intact 5Gy X-ray treated planaria 5GY2DA

tag: Intact, 5Gy X-ray treated, sacrificed 2 days after the treatment


title: Placebo treated ipsilateral to stroke P6IC-1a

description: affy original enzo kit processing

tag: placebo treated ipsilateral to stroke


title: Intact 5Gy X-ray treated planaria 5GY2DB


title: Placebo treated ipsilateral to stroke replicate P6IC-2a

description: affy original enzo kit processing

tag: placebo treated ipsilateral to stroke replicate


title: Intact 5Gy X-ray treated planaria 5GY2DC


title: Intact 5Gy X-ray treated planaria 5GT5DC

tag: Intact, 5Gy X-ray treated, sacrificed 5 days after the treatment


title: Day 0 involuting mouse mammary gland

city: Winnipeg

first: Yvonne

last: Myal

state: Manitoba

address: 770 Bannatyne Ave.

department: Pathology

country: Canada

institute: University of Manitoba

description: Pooled RNA from D0 mice and from D1 mice was compared for differential gene expression by microarray analysis conducted by Paradigm Array Labs (Research Triangle Park, North Carolina, USA). The Affymetrix GeneChip Mouse Genome 430 Plus 2.0 Array (Affymetrix, Santa Clara CA. USA) was used.  The array contained 45,100 probe sets (The Affymetrix probe-set identificator) and represented 39,000 transcripts. The Affymetrix Statistical Algorithms, implemented in the Affymetrix Microarray Suite 5.0 software, were used in the expression analysis of GeneChip probe arrays.

source_name: mammary gland

growth_protocol: Female CD1 mice, 6 weeks of age, were purchased from Charles River Breeding Laboratory (Wilmington, MA) and housed at the University of Manitoba Animal Care Facility. All procedures were approved by the Animal Care Committee of the University of Manitoba, under Canadian Council for Animal Care Guidelines.  Virgin female mice were mated with CD1 males.  Litter sizes were normalized to six pups 1-2 days after delivery, with the delivery day considered as day 0 (D0) of lactation.  At day ten (D10) of lactation, when lactation was fully established, the pups were forcibly weaned. This time point was deemed day 0 (D0) of involution. Animals were sacrificed and mammary glands were dissected from D0 and D1, involuting mice.  Dissected tissue was immediately frozen on dry ice and stored at –70oC.

extract_protocol: Trizol


title: CSB null replicate 1 U133B

status: Public on Jul 14 2006

city: Seattle

first: John

middle: C

last: Newman

state: WA

address: 1959 NE Pacific St.

department: Biochemistry

institute: University of Washington

description: Cockayne syndrome (CSB) fibroblasts mock-rescued with expression of eGFP cDNA

data_processing: Affymetrix Microarray Suite version 5.0, values scaled to Target Signal of 800

organism: Homo sapiens

source_name: human Cockayne syndrome skin fibroblasts

label_protocol: Approximately 2 microg of polyA RNA was processed to produce biotinylated cRNA targets.

extract_protocol: Stable lines of hTERT-immortalized, mock-rescued fibroblasts were grown to 60-80% confluence, and total RNA collected in RNeasy spin columns (Qiagen). Samples were enriched for PolyA RNA using Oligotex (Qiagen).

tag: Patient

tag: Primary cell line


title: Day 1 involuting mouse mammary gland

data_processing: Pooled RNA from D0 mice and from D1 mice was compared for differential gene expression by microarray analysis conducted by Paradigm Array Labs (Research Triangle Park, North Carolina, USA). The Affymetrix GeneChip Mouse Genome 430 Plus 2.0 Array (Affymetrix, Santa Clara CA. USA) was used.  The array contained 45,100 probe sets (The Affymetrix probe-set identificator) and represented 39,000 transcripts. The Affymetrix Statistical Algorithms, implemented in the Affymetrix Microarray Suite 5.0 software, were used in the expression analysis of GeneChip probe arrays.

growth_protocol: Female CD1 mice, 6 weeks of age, were purchased from Charles River Breeding Laboratory (Wilmington, MA) and housed at the University of Manitoba Animal Care Facility. All procedures were approved by the Animal Care Committee of the University of Manitoba, under Canadian Council for Animal Care Guidelines.  Virgin female mice were mated with CD1 males.  Litter sizes were normalized to six pups 1-2 days after delivery, with the delivery day considered as day 0 (D0) of lactation.  At day ten (D10) of lactation, when lactation was fully established, the pups were forcibly weaned. This time point was deemed day 0 (D0) of involution. Animals were sacrificed and mammary glands were dissected from D0 and D1, involuting mice.  Dissected tissue was immediately frozen on dry ice and stored at ?70oC.


title: CSB mut-rescued replicate 2 U133B

description: Cockayne syndrome (CSB) fibroblasts rescued with expression of ATPase mutant (K538R) CSB cDNA

extract_protocol: Stable lines of hTERT-immortalized, CSB mut-rescued fibroblasts were grown to 60-80% confluence, and total RNA collected in RNeasy spin columns (Qiagen). Samples were enriched for PolyA RNA using Oligotex (Qiagen).


title: CSB wt-rescued replicate 3 U133B

description: Cockayne syndrome (CSB) fibroblasts rescued with expression of wt CSB cDNA

extract_protocol: Stable lines of hTERT-immortalized, CSB wt-rescued fibroblasts were grown to 60-80% confluence, and total RNA collected in RNeasy spin columns (Qiagen). Samples were enriched for PolyA RNA using Oligotex (Qiagen).


title: CSB wt-rescued replicate 2 U133B


title: 24h_IVS  Sham tissue, biological rep2, Av2

city: Laramie

first: Mark

last: Stayton

state: WY

address: Dept. 3944, 1000 E. University Ave.

institute: University of Wyoming

description: Gene expression data from different regions of the mouse heart

hyb_protocol: Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.

data_processing: The data were analyzed with Robust Multi-array Averaging (RMA; www.bioconductor.org) and global scaling (across 192 chips)as normalization method.

source_name: C57/BL6 heart tissue

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

extract_protocol: Total RNA was prepared from individual frozen tissue samples using an SDS/phenol isolation protocol after which equal weights of RNA from 4-10 mice were pooled for each dissected tissue type.

treatment_protocol:
Permanent occlusion of the Left Anterior Descending coronary artery was performed on adult male (8 to 10 wk old) C57BL/6J mice. To exclude surgical effects on gene expression, sham surgeries were conducted by passing suture under the artery without ligation. Animals were sacrificed at time t=0 (naïve control) and at each time point post-AMI (0.25, 1, 4, 12, 24 and 48 h)
At each time point 4-10 animals were sacrificed and hearts harvested, regionally dissected and immediately frozen in liquid N2.

tag: Weight of mouse

tag: Age

value: 8-10 wk old


title: CSB mut-rescued replicate 1 U133B


title: 12h_IVS  Sham tissue, biological rep2, Av2


title: 48h_IVS  Sham tissue, biological rep2, Av2


title: CSB null replicate 3 U133B


title: 60 min_IVS  Sham tissue, biological rep2, Av2


title: CSB wt-rescued replicate 1 U133B


title: 4h_IVS  Sham tissue, biological rep2, Av2


title: 4h_post-AMI_IVS tissue, biological rep2, Av2


title: 15 min_IVS  Sham tissue, biological rep2, Av2


title: Naïve IVS, biological rep2, Av2


title: 12h_post-AMI_IVS tissue, biological rep2, Av2


title: 24h_post-AMI_IVS tissue, biological rep2, Av2


title: CSB null replicate 2 U133B


title: Estrogen treated ipsilateral to stroke replicate E6IC-2a

description: affy original enzo kit processing

tag: estrogen treated ipsilateral to stroke replicate


title: 4h_post-AMI_FW tissue, biological rep2, Av2


title: 24h_post-AMI_FW tissue, biological rep2, Av2


title: 60 min_post-AMI_FW tissue, biological rep2, Av2


title: 60 min_post-AMI_IVS tissue, biological rep2, Av2


title: 15 min_post-AMI_IVS tissue, biological rep2, Av2


title: 12h_post-AMI_FW tissue, biological rep2, Av2


title: 48h_post-AMI_FW tissue, biological rep2, Av2


title: 48h_LV  Sham tissue, biological rep2, Av2


title: 12h_LV  Sham tissue, biological rep2, Av2


title: 15 min_LV  Sham tissue, biological rep2, Av2


title: 24h_LV  Sham tissue, biological rep2, Av2


title: 24h_post-AMI_IF tissue, biological rep2, Av2


title: 15 min_post-AMI_FW tissue, biological rep2, Av2


title: 60 min_LV  Sham tissue, biological rep2, Av2


title: 48h_post-AMI_IF tissue, biological rep2, Av2


title: 4h_LV  Sham tissue, biological rep2, Av2


title: 60 min_IVS  Sham tissue, biological rep1, Av2


title: 12h_post-AMI_IF tissue, biological rep2, Av2


title: 4h_post-AMI_IF tissue, biological rep2, Av2


title: 4h_IVS  Sham tissue, biological rep1, Av2


title: 12h_IVS  Sham tissue, biological rep1, Av2


title: 24h_IVS  Sham tissue, biological rep1, Av2


title: 48h_post-AMI_IVS tissue, biological rep1, Av2


title: 15 min_IVS  Sham tissue, biological rep1, Av2


title: 12h_post-AMI_FW tissue, biological rep1, Av2


title: 60 min_post-AMI_IVS tissue, biological rep1, Av2


title: Naïve LV, biological rep2, Av2


title: Naïve IVS, biological rep1, Av2


title: Naïve2 IVS, biological rep1, Av2


title: 24h_post-AMI_IVS tissue, biological rep1, Av2


title: 4h_post-AMI_IVS tissue, biological rep1, Av2


title: 12h_post-AMI_IVS tissue, biological rep1, Av2


title: 48h_IVS  Sham tissue, biological rep1, Av2


title: 24h_post-AMI_FW tissue, biological rep1, Av2


title: 15 min_post-AMI_IVS tissue, biological rep1, Av2


title: 4h_post-AMI_FW tissue, biological rep1, Av2


title: 60 min_post-AMI_FW tissue, biological rep1, Av2


title: 48h_post-AMI_FW tissue, biological rep1, Av2


title: 48h_LV  Sham tissue, biological rep1, AV2


title: 15 min_post-AMI_FW tissue, biological rep1, Av2


title: 48h_post-AMI_IF tissue, biological rep1, AV2


title: 24h_post-AMI_IF tissue, biological rep1, AV2


title: 60 min_post-AMI_IF tissue, biological rep2, Av2


title: 12h_LV  Sham tissue, biological rep1, AV2


title: 60 min_LV  Sham tissue, biological rep1, AV2


title: 24h_LV  Sham tissue, biological rep1, AV2


title: 4h_LV  Sham tissue, biological rep1, AV2


title: 15 min_LV  Sham tissue, biological rep1, AV2


title: 12h_post-AMI_IF tissue, biological rep1, AV2


title: Naïve LV, biological rep1, AV2


title: 60 min_post-AMI_IF tissue, biological rep1, AV2


title: 48h_IVS  Sham tissue, biological rep2, Bv2


title: 15 min_IVS  Sham tissue, biological rep2, Bv2


title: 24h_IVS  Sham tissue, biological rep2, Bv2


title: 24h_post-AMI_IVS tissue, biological rep2, Bv2


title: 15 min_post-AMI_IF tissue, biological rep1, AV2


title: 4h_IVS  Sham tissue, biological rep2, Bv2


title: 12h_post-AMI_IVS tissue, biological rep2, Bv2


title: 4h_post-AMI_IF tissue, biological rep1, AV2


title: 60 min_IVS  Sham tissue, biological rep2, Bv2


title: 48h_post-AMI_IVS tissue, biological rep2, Bv2


title: 15 min_post-AMI_IVS tissue, biological rep2, Bv2


title: 60 min_post-AMI_IVS tissue, biological rep2, Bv2


title: Naïve IVS, biological rep2, Bv2


title: 4h_post-AMI_IVS tissue, biological rep2, Bv2


title: 12h_IVS  Sham tissue, biological rep2, Bv2


title: 4h_post-AMI_FW tissue, biological rep2, Bv2


title: 15 min_post-AMI_FW tissue, biological rep2, Bv2


title: 48h_post-AMI_FW tissue, biological rep2, Bv2


title: 24h_post-AMI_FW tissue, biological rep2, Bv2


title: 4h_LV  Sham tissue, biological rep2, Bv2


title: 12h_LV  Sham tissue, biological rep2, Bv2


title: 12h_post-AMI_FW tissue, biological rep2, Bv2


title: 48h_LV  Sham tissue, biological rep2, Bv2


title: 24h_LV  Sham tissue, biological rep2, Bv2


title: 60 min_post-AMI_FW tissue, biological rep2, Bv2


title: 12h_post-AMI_IF tissue, biological rep2, Bv2


title: 48h_post-AMI_IF tissue, biological rep2, Bv2


title: 24h_post-AMI_IF tissue, biological rep2, Bv2


title: 60 min_LV  Sham tissue, biological rep2, Bv2


title: 4h_post-AMI_IF tissue, biological rep2, Bv2


title: 48h_IVS  Sham tissue, biological rep1, Bv2


title: 24h_IVS  Sham tissue, biological rep1, Bv2


title: 60 min_post-AMI_IF tissue, biological rep2, Bv2


title: 15 min_LV  Sham tissue, biological rep2, Bv2


title: 24h_post-AMI_IVS tissue, biological rep1, Bv2


title: Naïve LV, biological rep2, Bv2


title: 15 min_IVS  Sham tissue, biological rep1, Bv2


title: 60 min_IVS  Sham tissue, biological rep1, Bv2


title: 15 min_post-AMI_IF tissue, biological rep2, Bv2


title: 4h_post-AMI_IVS tissue, biological rep1, Bv2


title: 48h_post-AMI_IVS tissue, biological rep1, Bv2


title: Naïve2 IVS, biological rep1, Bv2


title: 60 min_post-AMI_IVS tissue, biological rep1, Bv2


title: Naïve IVS, biological rep1, Bv2


title: 24h_post-AMI_FW tissue, biological rep1, Bv2


title: 48h_post-AMI_FW tissue, biological rep1, Bv2


title: 60 min_post-AMI_FW tissue, biological rep1, Bv2


title: 15 min_post-AMI_IVS tissue, biological rep1, Bv2


title: 15 min_post-AMI_FW tissue, biological rep1, Bv2


title: 4h_post-AMI_FW tissue, biological rep1, Bv2


title: 12h_LV  Sham tissue, biological rep1, Bv2


title: 48h_LV  Sham tissue, biological rep1, Bv2


title: 24h_LV  Sham tissue, biological rep1, Bv2


title: 12h_post-AMI_FW tissue, biological rep1, Bv2


title: 4h_LV  Sham tissue, biological rep1, Bv2


title: 4h_post-AMI_IF tissue, biological rep1, Bv2


title: 12h_post-AMI_IF tissue, biological rep1, Bv2


title: 4h_IVS  Sham tissue, biological rep1, Bv2


title: 24h_post-AMI_IF tissue, biological rep1, Bv2


title: 24h_IVS  Sham tissue, biological rep2, Cv2


title: Naïve2 LV, biological rep1, Bv2


title: 60 min_post-AMI_IF tissue, biological rep1, Bv2


title: 60 min_LV  Sham tissue, biological rep1, Bv2


title: 15 min_post-AMI_IF tissue, biological rep1, Bv2


title: 15 min_LV  Sham tissue, biological rep1, Bv2


title: 48h_post-AMI_IF tissue, biological rep1, Bv2


title: 12h_IVS  Sham tissue, biological rep2, Cv2


title: 15 min_post-AMI_IF tissue, biological rep2, Av2


title: 4h_IVS  Sham tissue, biological rep2, Cv2


title: 60 min_IVS  Sham tissue, biological rep2, Cv2


title: 24h_post-AMI_IVS tissue, biological rep2, Cv2


title: 48h_post-AMI_IVS tissue, biological rep2, Cv2


title: 60 min_post-AMI_IVS tissue, biological rep2, Cv2


title: 12h_post-AMI_IVS tissue, biological rep1, Bv2


title: 12h_post-AMI_IVS tissue, biological rep2, Cv2


title: 60 min_post-AMI_FW tissue, biological rep2, Cv2


title: 12h_IVS  Sham tissue, biological rep1, Bv2


title: 15 min_post-AMI_FW tissue, biological rep2, Cv2


title: 15 min_post-AMI_IVS tissue, biological rep2, Cv2


title: 4h_post-AMI_IVS tissue, biological rep2, Cv2


title: 4h_post-AMI_FW tissue, biological rep2, Cv2


title: 24h_post-AMI_FW tissue, biological rep2, Cv2


title: 24h_LV  Sham tissue, biological rep2, Cv2


title: 4h_LV  Sham tissue, biological rep2, Cv2


title: 15 min_IVS  Sham tissue, biological rep2, Cv2


title: 12h_post-AMI_FW tissue, biological rep2, Cv2


title: 48h_IVS  Sham tissue, biological rep2, Cv2


title: 60 min_LV  Sham tissue, biological rep2, Cv2


title: Naïve LV, biological rep1, Bv2


title: 15 min_LV  Sham tissue, biological rep2, Cv2


title: Naïve IVS, biological rep2, Cv2


title: 48h_post-AMI_IF tissue, biological rep2, Cv2


title: 24h_post-AMI_IF tissue, biological rep2, Cv2


title: 12h_post-AMI_IF tissue, biological rep2, Cv2


title: 24h_IVS  Sham tissue, biological rep1, Cv2


title: 60 min_post-AMI_IF tissue, biological rep2, Cv2


title: 48h_post-AMI_FW tissue, biological rep2, Cv2


title: 4h_post-AMI_IF tissue, biological rep2, Cv2


title: 48h_IVS  Sham tissue, biological rep1, Cv2


title: 15 min_IVS  Sham tissue, biological rep1, Cv2


title: Naïve LV, biological rep2, Cv2


title: 15 min_post-AMI_IF tissue, biological rep2, Cv2


title: 24h_post-AMI_IVS tissue, biological rep1, Cv2


title: Naïve2 LV, biological rep1, AV2


title: 48h_post-AMI_IVS tissue, biological rep1, Cv2


title: L4286453RB

city: Montreal

first: Eduardo

last: Hernandez

state: Quebec

address: 3755 Cote-Sainte-Catherine Road

department: Molecular Oncology Group

institute: Lady Davis Institute for Medical Research (JGH)

description: Arrays were scanned with the GenePix 4000B Axon scanner.

hyb_protocol: OCI-UHN protocol. It can be found at www.microarray.ca/protocol

data_processing: Ratio: Ch1/Ch2. Data was normalized using the software GeneTraffic. Data was filtered in GenePix Pro to flag bad all spot under 300 in intesitiy for both channels. Normalization methode: LOWESS SubGrid.SAM One class response was used to select significant genes for each class.

tag: Cy3 (L-428) Experimental sample

value: L428 a Classical Hodgkin’s disease cell line (cHD).

tag: Cy5 (BCBL-1) Control sample BCBL1 a Primary Effusion Lymphoma (PEL)


title: 4h_IVS  Sham tissue, biological rep1, Cv2


title: 12h_IVS  Sham tissue, biological rep1, Cv2


title: 60 min_IVS  Sham tissue, biological rep1, Cv2


title: 48h_LV  Sham tissue, biological rep2, Cv2


title: 4h_post-AMI_IVS tissue, biological rep1, Cv2


title: Slide10_s52N3_3_s60N3_5

city: Urbana

middle: Robert

last: Band

state: IL

address: 1201 W. Gregory Dr

department: Biotechnology

institute: University of Illinois

description: Replicate 3 S. galili normoxia vs. S. judaei normoxia

hyb_protocol: hybridized overnight with Ambion hyb buffer at 42C

scan_protocol: scanned with Axon GenPix 6.0

label: Alexa 555

organism: Nannospalax ehrenbergi

label_protocol: Indirect amino allyl labeling

treatment_protocol: normoxia

tag: Adult Spalax ehrenbergi S. galili

label: Alexa 647

tag: Adult Spalax ehrenbergi S. judaei


title: Slide11_s60H3_3_s52N3_5

description: Replicate 3 S. judaei hypoxia vs. S. galili normoxia

treatment_protocol: hypoxia


title: Slide9_s52H3_3_s60H3_5

description: Replicate 3 S. galili hypoxia vs. S. judaei hypoxia


title: Slide6_s52N2_3_s60N2_5

description: Replicate 2 S. galili normoxic vs. S. judaei normoxic


title: 12h_post-AMI_IVS tissue, biological rep1, Cv2


title: BJAB7446RB

description:
Arrays were scanned with the GenePix 4000B Axon scanner.
Data File: Sample SS 12257446B MEZH0025R BJAB Cy3

data_processing: Data was normalized using the software GeneTraffic. Data was filtered in GenePix Pro to flag bad all spot under 300 in intesitiy for both channels. Normalization methode: LOWESS SubGrid.SAM One class response was used to select significant genes for each class.

source_name: BJAB

tag: Cy3 (BJAB) Experimental sample BJAB


title: Slide4_s60N1_3_s52H1_5

description: Replicate 1 S. judaei normoxic vs. S. galili hypoxic

organism: Nannospalax galili


title: Slide5_s52H2_3_s60H2_5

description: Replicate 2 S. galili hypoxic vs. S. judaei normoxic


title: L4286453RA

tag: Cy3 (L-428) Experimental sample  L428 a Classical Hodgkin’s disease cell line (cHD).


title: Slide8_s60N2_3_s52H2_5

description: Replicate 2 S. judaei normoxic vs. S. galili hypoxic


title: 60 min_post-AMI_IVS tissue, biological rep1, Cv2


title: 15 min_post-AMI_IVS tissue, biological rep1, Cv2


title: Naïve IVS, biological rep1, Cv2


title: Naïve2 IVS, biological rep1, Cv2


title: 48h_post-AMI_FW tissue, biological rep1, Cv2


title: NaS1-/- vs WT liver_2

city: St Lucia

first: Sean

middle: M

last: Grimmond

state: QLD

address: Research Rd

department: Genomics and Bioinformatics

country: Australia

institute: Institute of Molecular Bioscience, Uni of QLD

description: Pairwise comparison gene expression in wildtype Vs NaS1-/- 4 week old male liver.

hyb_protocol: Followed protocol described in: PMID: 15998744

data_processing: Imagene5.0, Lowess Normalisation (R)

source_name: NaS-/- liver

tag: Pooled 4 week old male NaS-/- mouse liver Samples (n=14)

source_name: WT liver

tag: Pooled 4 week old male WT mouse liver Samples (n=14)


title: 60 min_post-AMI_FW tissue, biological rep1, Cv2


title: CaCo2-SF-FAC_c

city: rennes

first: chicault

last: celine

address: 2 avenue du Pr Leon Bernard

country: France

description: Each sample were labelled with cy5 and a pool of each sample was constituted and labelled with cy3

hyb_protocol: Agilent oligonucleotide microarray in situ Hybridization Plus kit (p/n 5184-3568).

scan_protocol: Agilent dual laser DNA microarray scanner (p/n G2566AA) and Feature Extraction software 7.5 (p/n G2567AA)

data_processing: adjustment local background subtraction and global background Normalization method :  Linear&Lowess method. only features with a Signal-to-Noise Ratio (SNR) in at least one channel ≥ 2.6 were used for further analysis and saturated features (50% of pixels > saturation threshold, 65502) or non uniform features were discarded.

source_name: caco-2 cells

label_protocol: Agilent Low RNA Input Fluorescent Linear Amplification Kit (p/n 5184-3523)

growth_protocol: CaCo-2 cells were grown in DMEM containing 10% FBS, 1X non-essential amino-acids, 2mM L-glutamine and 100 IU/ml antibiotics (penicillin and streptomycin) (all reagents were purchased from Gibco BRL) in a humidified atmosphere of 95% air and 5% CO2.

extract_protocol: TRI REAGENT kit (Sigma)

treatment_protocol: Fully differentiated CaCo-2 cells were submitted to Iron and serum free medium + 4.4 µM FAC (ferric ammonium citrate) (SF-FAC)

tag: Caco-2 cells, originating from a human colorectal carcinoma (HTB-37)

source_name: pool of all used RNA

treatment_protocol:
Pool of all extracted RNAs from fully differentiated CaCo-2 cells submitted to various treatments:
(1) DMEM 10% FBS (DMEM-FBS)
(2) DMEM 10% FBS and 100 µM Hemin (DMEM-Hemin)
(3) Iron and serum free medium (IMDM+serum complement) (SF-0)
(4) Iron and serum free medium + 4.4 µM FAC (ferric ammonium citrate) (SF-FAC)


title: 15 min_post-AMI_FW tissue, biological rep1, Cv2


title: BJAB7446RA

description:
Sample SS 12257446A MEZH0025R BJAB Cy3
Arrays were scanned with the axon GenePix 4000B. Data collected with GenePix Pro 4 and analyzed with GenTraffic from iobion.

data_processing: Data was normaized using the softhware GeneTraffic. Data was filtered in GenePix Pro to flag bad all spot under 300 in intesitiy for both channels. Normalization methode: LOWESS SubGrid.SAM One class response was used to select significant genes for each class.

tag: Cy3 (BJAB) Experimental sample BJAB a BL cell line


title: NaS1-/- vs WT liver_1

source_name: NaS1-/- liver

tag: Pooled 4 week old male NaS1-/- mouse liver Samples (n=14)


title: 4h_post-AMI_FW tissue, biological rep1, Cv2


title: Slide3_s60H1_3_s52N1_5

description: Replicate 1 S. judeai hypoxiaa vs. S. galili normoxia

organism: Nannospalax judaei

source_name: Adult Spalax ehrenbergi S. judaei

source_name: Adult Spalax ehrenbergi S. galili


title: Slide12_s60N3_3_s52H3_5

description: Replicate 3 S. judaei normoxia vs. S. galili hypoxia


title: Slide2_s52N1_3_s60N1_5

description: Replicate 1 S. galili normoxia vs. S. judaei normoxia


title: 48h_LV  Sham tissue, biological rep1, Cv2


title: CaCo2-SF-FAC_a


title: WT vs NaS1-/- liver_2

source_name: Wild type liver


title: 12h_post-AMI_FW tissue, biological rep1, Cv2


title: CaCo2-SF-0_c

treatment_protocol: Fully differentiated CaCo-2 cells were submitted to Iron and serum free medium (IMDM+serum complement) (SF-0)


title: WT vs NaS1-/- liver_1


title: CaCo2-SF-0_a

source_name: Caco-2 cells


title: CaCo2-DMEM-Hemin_b

treatment_protocol: Fully differentiated CaCo-2 cells were submitted to DMEM 10% FBS and 100 µM Hemin (DMEM-Hemin)


title: Slide1_s52H1_3_s60H1_5

description: Replicate 1 S. galili hypoxia vs. S. judaei hypoxia


title: CaCo2-SF-0_b


title: CaCo2-DMEM-Hemin_c


title: 24h_LV  Sham tissue, biological rep1, Cv2

description: Gene expression data from different regions of the mouse heart


title: 12h_LV  Sham tissue, biological rep1, Cv2


title: CaCo2-DMEM-Hemin_a


title: Slide7_s60H2_3_s52N2_5

description: Replicate 2 S. judaei hypoxic vs. S. galili normoxic


title: 4h_LV  Sham tissue, biological rep1, Cv2


title: 60 min_LV  Sham tissue, biological rep1, Cv2


title: 12h_post-AMI_IF tissue, biological rep1, Cv2


title: 15 min_LV  Sham tissue, biological rep1, Cv2


title: 24h_post-AMI_IF tissue, biological rep1, Cv2


title: CaCo2-DMEM-FBS_b

treatment_protocol: Fully differentiated CaCo-2 cells were submitted to DMEM 10% FBS (DMEM-FBS)


title: CaCo2-SF-FAC_b


title: 48h_post-AMI_IF tissue, biological rep1, Cv2


title: CaCo2-DMEM-FBS_c

source_name: Pool of all used RNA

treatment_protocol:
Pool of all extracted RNAs from fully differentiated CaCo-2 cells submitted to various treatments: (1) DMEM 10% FBS (DMEM-FBS)
(2) DMEM 10% FBS and 100 µM Hemin (DMEM-Hemin) (3) Iron and serum free medium (IMDM+serum complement) (SF-0)
(4) Iron and serum free medium + 4.4 µM FAC (ferric ammonium citrate) (SF-FAC)


title: 4h_post-AMI_IF tissue, biological rep1, Cv2


title: 60 min_post-AMI_IF tissue, biological rep1, Cv2


title: CSB null replicate 3 U133A

description: Cockayne syndrome (CSB) fibroblasts mock-rescued with expression of eGFP cDNA


title: Naïve2 LV, biological rep1, Cv2


title: 15 min_post-AMI_IF tissue, biological rep1, Cv2


title: CSB mut-rescued replicate 2 U133A

description: Cockayne syndrome (CSB) fibroblasts rescued with expression of ATPase mutant (K538R) CSB cDNA


title: CSB mut-rescued replicate 1 U133A


title: Naïve LV, biological rep1, Cv2


title: CSB wt-rescued replicate 3 U133A

description: Cockayne syndrome (CSB) fibroblasts rescued with expression of wt CSB cDNA


title: CSB null replicate 2 U133A


title: CaCo2-DMEM-FBS_a

description: Each sample was labelled with cy5 and a pool of each sample was constituted and labelled with cy3.

source_name: CaCo-2 cells


title: 24h_post-AMI_FW tissue, biological rep1, Cv2


title: CSB wt-rescued replicate 1 U133A


title: 12h_LV  Sham tissue, biological rep2, Cv2


title: B NUH.BT114

status: Public on Jul 13 2006

city: Singapore

first: Lance

middle: David

last: Miller

address: 60 Bioplois Street, #02-01 Genome

department: Microarray and Expression Genomics

country: Singapore

institute: Genome Institute of Singapore

description: Series of 40 tumours

hyb_protocol: Standard Affymetrix procedure

scan_protocol: Standard Affymetrix procedure

data_processing: Affymetrix Microarray Suite Version 5.0

source_name: Breast Tumor

label_protocol: Approximately 10ug of total RNA was processed to produce biotynylated cRNA targets

extract_protocol: Qiagen RNeasy Mini Kit

tag: NUH-sample ID

tag: grade

tag: Probability 1-like (by SWS classifier)

tag: Probability 3-like (by SWS classifier)

tag: Genetic grade signature status prediction (by SWS classifier)


title: B NUH.BT113

description: Series of 40 tumours


title: B NUH.BT108

description: Series of 40 tumours


title: B NUH.BT097

description: Series of 40 tumours


title: B NUH.BT095

description: Series of 40 tumours


title: B NUH.BT096

description: Series of 40 tumours


title: B NUH.BT104

description: Series of 40 tumours


title: B NUH.BT090

description: Series of 40 tumours


title: B NUH.BT103

description: Series of 40 tumours


title: B NUH.BT119

description: Series of 40 tumours


title: B NUH.BT111

description: Series of 40 tumours


title: B NUH.BT094

description: Series of 40 tumours


title: B NUH.BT093

description: Series of 40 tumours


title: B NUH.BT083

description: Series of 40 tumours


title: B NUH.BT088

description: Series of 40 tumours


title: B NUH.BT085

description: Series of 40 tumours


title: B NUH.BT087

description: Series of 40 tumours


title: B NUH.BT070

description: Series of 40 tumours


title: B NUH.BT074

description: Series of 40 tumours


title: B NUH.BT086

description: Series of 40 tumours


title: B NUH.BT078

description: Series of 40 tumours


title: CSB null replicate 1 U133A

label_protocol: Approximately 2 mcirog of polyA RNA was processed to produce biotinylated cRNA targets.

tag: Patient

tag: Primary cell line


title: B NUH.BT055

description: Series of 40 tumours


title: CSB wt-rescued replicate 2 U133A


title: B NUH.BT068

description: Series of 40 tumours


title: B NUH.BT067

description: Series of 40 tumours


title: B NUH.BT061

description: Series of 40 tumours


title: B NUH.BT058

description: Series of 40 tumours


title: B NUH.BT049

description: Series of 40 tumours


title: B NUH.BT047

description: Series of 40 tumours


title: B NUH.BT054

description: Series of 40 tumours


title: B NUH.BT046

description: Series of 40 tumours


title: B NUH.BT031

description: Series of 40 tumours


title: B NUH.BT035

description: Series of 40 tumours


title: B NUH.BT029

description: Series of 40 tumours


title: A NUH.BT058

description: Series of 40 tumours


title: B NUH.BT019

description: Series of 40 tumours


title: B NUH.BT009

description: Series of 40 tumours


title: B NUH.BT023

description: Series of 40 tumours


title: B NUH.BT018

description: Series of 40 tumours


title: B NUH.BT014

description: Series of 40 tumours


title: A NUH.BT085

description: Series of 40 tumours


title: 13255119_Cggill3D_110905

city: Charleston

first: MarineGenomics

last: Project

state: SC

address: 331 Fort Johnson Rd

hyb_protocol: 50% formamide. 2.4% SDS, 4X SSPE, 2.5X Denhardts

data_processing: Ch1 Intensities read directly from the Microarray scanner.

organism: Magallana gigas

tag: adult, gill, aquacultured


title: 13255118_Cggill3F_110905


title: 13255113_Cggill3E_110905


title: Rat contusion model_normal 3

status: Public on Jul 12 2006

city: valhalla

first: koko

middle: murakami

last: midelfort

state: NY

address: grasslands reservation

department: anatomy and cell biology

institute: new york medical college

description: Gene expression analysis after the treatments for functional recovery after contusion injury which are mediated by glutathione

hyb_protocol: By Columbia University Facility

scan_protocol: By Columbia University Facility

data_processing: RMA

label: Biotin

label_protocol: By Columbia University Facility

growth_protocol: Following contusion injury, rats were housed individually, and the bladders were expressed manually twice daily.

extract_protocol: Spinal cords were extracted after PBS perfusion for 10 min and stored in RNAlater (Ambion) at -80oC.  Total RNA was prepared by RNeasy Lipid Tissue Mini Kit and MinElute Cleanup Kit (Qiagen)

treatment_protocol:
Contusion: 10-g weight with a tip diameter 2.5mm dropped on T10 spinal cord from a height25mm
Clenbuterol: 150mg/kg i.p. 20 min postinjury
X-ray: Total 10 Grays (Novalis BrainLab S Clenbuterol, X-ray and Tempol on Contusion Rat model
haped Ban (6 MV) RadioSurgery System) 20 min postinjury
Tempol: 275mg/kg i.p. 20 min postinjury
Buthionine sulfoximine: 150mg/kg i.p. 24 h preinjury

tag: Wister rats, adult female, 240g


title: B NUH.BT042

description: Series of 40 tumours


title: Rat contusion model_normal 2


title: 13255131_CVgill1F_110905

organism: Crassostrea virginica

tag: adult, gill, field collection


title: 13257599_C.V.hepatop_2B_10012005

tag: adult, hepatopancreas, field collection


title: 13255128_CVgill1E_110905


title: B NUH.BT022

description: Series of 40 tumours


title: 13254985_C.A.hepatop_5A_10012005

organism: Magallana ariakensis

tag: adult, hepatopancreas, aquacultured


title: Rat contusion model-normal control 1


title: 13255127_CVgill1D_110905


title: Rat contusion model-BSO 3

description: Gene expression analysis after the treatments for functional recovery after contusion injury which are mediated by gluathione

source_name: BSO on contusion 3 of 3

label_protocol: By Columbia Unviersity Facility

treatment_protocol:
Contusion: 10-g weight with a tip diameter 2.5mm dropped on T10 spinal cord from a height25mm
Clenbuterol: 150mg/kg i.p. 20 min postinjury
X-ray: Total 10 Grays (Novalis BrainLab Shaped Ban (6 MV) RadioSurgery System) 20 min postinjury
Tempol: 275mg/kg i.p. 20 min postinjury
Buthionine sulfoximine: 150mg/kg i.p. 24 h preinjury


title: 13257598_C.V.hepatop_2A_10012005


title: 13255141_C.V.hepatop_2C_high


title: Rat contusion model-tempol 3

source_name: Tempol on contusion 3 of 3


title: 13257618_C.G.hepatop_4B_10012005


title: Rat contusion model-tempol&BSO 1

source_name: Tempol & BSO on contusion 1 of 3


title: Rat contusion model-tempol 2

source_name: Tempol on contusion 2 of 3


title: 13254991_C.G.hepatop_4A_10012005


title: Rat contusion model-tempol&BSO 3

source_name: Tempol & BSO on contusion 3 of 3


title: Rat contusion model-X ray 1

source_name: X-ray on contusion 1 of 3


title: 13257146_C.A.hepatop_5C_10012005


title: Rat contusion model-BSO 1

source_name: BSO on contusion 1 of 3


title: Rat contusion model-tempol 1

source_name: Tempol on contusion 1 of 3


title: Rat contusion model-tempol&BSO 2

source_name: Tempol & BSO on contusion 2 of 3


title: Rat contusion model-X ray 3

source_name: X-ray on contusion 3 of 3


title: Rat contusion model-clenbuterol 2

source_name: Clenbuterol on contusion 2 of 2


title: Rat contusion model-BSO 2

source_name: BSO on contusion 2 of 3


title: Rat contusion model-X ray 2

source_name: X-ray on contusion 2 of 3


title: 13257148_C.A.hepatop_5B_10012005


title: Rat contusion model-laminectomy 3

source_name: Laminectomy control 3 of 3


title: Rat contusion model-clenbuterol 1

source_name: Clenbuterol on contusion 1 of 2


title: 13257620_C.G.hepatop_4C_10012005


title: wild-type control strain, biological rep 1

city: Martinsried

first: Rainer

last: Schrader

state: Bavaria

address: Am Klopferspitz 18

department: Proteinanalytics

institute: Max-Planck-Institut for Biochemistry

description: Gene expression data from yeast eIF5A-delta strain expressing human wild-type EIF5A at 25°C.

hyb_protocol: Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Yeast Genome Array S98. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

data_processing: Scanned raw data images were processed with Affymetrix GeneChip V3.2 software. Data from the arrays was normalized (RMA), and expression values based on an additive model were calculated, according to the method of Irizarry et al. Differentially expressed genes were identified by the permutation-based method of Tusher et al.

organism: Saccharomyces cerevisiae

source_name: haploid Saccharomyces strain derived from W303a

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

extract_protocol: Hot phenol extraction of total RNA was performed according to the literature.

treatment_protocol: Strains were cultured at 25°C (permissive temperature) until reaching the early lorarithmic phase of growth. 2*10^8 cells of each strain were harvested by centrifugation and briefly rinsed with 1 volume of water (4°C), cells were either frozen at -80°C or directly subjected to the isolation of total RNA.

tag: Genotype

value: strain bears two disrupted genes (hyp2 and anb1) expressing wild-type human EIF5A1(plasmid born)

tag: Growth

value: normal, comparable to strains expressing eIF5A protein from HYP2


title: mutant V81G expressing strain, biological rep4

description: Gene expression data from yeast eIF5A-delta strain expressing human V81G point mutated EIF5A at 25°C.

value: strain bears two disrupted genes (hyp2 and anb1) expressing V81G point mutated human EIF5A1(plasmid born)

value: distinct temperature sensitivity


title: Rat contusion model-contusion

source_name: Contusion control 1 of 2


title: Rat contusion model-contusion 2

source_name: Contusion control 2 of 2


title: Rat contusion model-laminectomy 1

description: Gene expression was examined after the treatments for functional recovery after contusion injury which were mediated by glutathione

source_name: Laminectomy control 1 of 3


title: EGF12h replicate 3

city: St. Louis

first: Bin

last: Liu

state: MO

address: 660 S. Euclid

department: Ophthalmology

institute: Washington University

description: control astrocytes

data_processing: Affymetrix Microarray Suite version 5.0

source_name: optic nerve head astrocyte

label_protocol: Approximately 3 µg of total RNA was processed to produce biotinylated cRNA targets.

extract_protocol: Primary astrocyte cultures from optic nerve head. Cells were lysed in separate groups in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).

tag: primary cell culture


title: Rat contusion model-laminectomy 2

source_name: Laminectomy control 2 of 3


title: Control for EGF 12h replicate 1

description: control astrocytes


title: Control for EGF 12h replicate 2

description: control astrocytes


title: naive vs. influenza A virus d7

city: Berlin

first: Hans-Joachim

last: Mollenkopf

address: Charitéplatz 1

institute: Max-Planck-Institute for Infection Biology

description: Microarray experiments were done as two-color hybridizations. RNA labeling was performed with a Fluorescent Linear Amplification Kit (Agilent Technologies). In brief, cDNA was reverse transcribed from 4 �g of total RNA (derived from five lungs in each group and time point, respectively) with an oligo-dT-T7 promoter primer and MMLV-RT. Second strand synthesis was carried out with random hexamers. Fluorescent antisense cRNA was synthesized with either cyanine 3-CTP (Cy3-CTP) or cyanine 5-CTP (Cy5-CTP) and T7 polymerase. The fluorescent-labeled antisense cRNA was precipitated overnight with LiCl, ethanol washed and resuspended in water. The purified products were quantified at A552nm for Cy3-CTP and A650nm for Cy5-CTP. Before hybridization, 1.25 �g labeled cRNA of each product were fragmented and mixed with control targets and hybridization buffer according to the supplier's protocol (Agilent Technologies). Hybridizations were done overnight for approximately 17 h at 60�C. The slides were washed according to the manufacturer's manual and scanning of microarrays was performed with 5 �m resolution using a DNA microarray laser scanner (Agilent Technologies). In order to compensate dye specific effects, and to ensure statistically relevant data, a color swap was performed. The RNA samples were labeled vice verse with the two fluorescent dyes (fluorescence reversal).

data_processing: Agilent FE 6.1.1.1 / Rosetta Resolver Built 3.2.2

source_name: naive

tag: C57Bl/6 naive control mice received virus-free allantoic fluid intranasally

source_name: influenza A virus strain HKx31(x31; H3N2) infected d7

tag: C57BL/6 mice were intranasally infected with a sublethal dose (360 hemagglutinating units) in 30 µl allantoic fluid


title: wild-type control strain, biological rep 2


title: Control for EGF 12h replicate 3

description: control astrocytes


title: Control for EGF 4h replicate 1

description: control astrocytes


title: Control for EGF 4h replicate 2

description: control astrocytes


title: mutant V81G expressing strain, biological rep1


title: EGF 4h replicate 1

description: control astrocytes


title: mutant V81G expressing strain, biological rep2


title: EGF 12h replicate 1

description: control astrocytes


title: EGF 4h replicate 2

description: control astrocytes


title: mutant V81G expressing strain, biological rep3


title: EGF 12h replicate 2

description: control astrocytes


title: Control for EGF 4h replicate 3

description: control astrocytes


title: doxy 55h

status: Public on Jul 11 2006

city: San Francisco

first: Joseph

middle: L

last: DeRisi

state: CA

department: Biochemistry and Biophysics

institute: University of California San Francisco

description: doxy 55h

data_processing: Spot analysis was performed with GenePix v3.0 and stored in a relational database (NOMAD). Extracted values are directly as calculated by GenePix and not normalized.

organism: Plasmodium falciparum

source_name: Plasmodium falciparum strain 3D7 - doxy 55h

tag: Plasmodium falciparum strain 3D7

source_name: Plasmodium falciparum strain 3D7 total RNA reference pool


title: doxy 50h

description: doxy 50h

source_name: Plasmodium falciparum strain 3D7 - doxy 50h

tag: Plasmodium falciparum strain 3D7 total RNA reference pool


title: wild-type control strain, biological rep 3


title: naive vs. influenza A virus d4

source_name: influenza A virus strain HKx31(x31; H3N2) infected d4


title: doxy 45h

description: doxy 45h

source_name: Plasmodium falciparum strain 3D7 - doxy 45h


title: doxy 20h

description: doxy 20h

source_name: Plasmodium falciparum strain 3D7 - doxy 20h


title: doxy 0h

description: doxy 0h

source_name: Plasmodium falciparum strain 3D7 - doxy 0h


title: EGF 4h replicate 3

description: control astrocytes


title: doxy 30h

description: doxy 30h

source_name: Plasmodium falciparum strain 3D7 - doxy 30h


title: doxy 40h

description: doxy 40h

source_name: Plasmodium falciparum strain 3D7 - doxy 40h


title: control 35h

description: control 35h

source_name: Plasmodium falciparum strain 3D7 - control 35h


title: control 45h

description: control 45h

source_name: Plasmodium falciparum strain 3D7 - control 45h


title: control 25h

description: control 25h

source_name: Plasmodium falciparum strain 3D7 - control 25h


title: doxy 10h

description: doxy 10h

source_name: Plasmodium falciparum strain 3D7 - doxy 10h


title: control 15h

description: control 15h

source_name: Plasmodium falciparum strain 3D7 - control 15h


title: control 40h

description: control 40h

source_name: Plasmodium falciparum strain 3D7 - control 40h


title: doxy 15h

description: doxy 15h

source_name: Plasmodium falciparum strain 3D7 - doxy 15h


title: doxy 25h

description: doxy 25h

source_name: Plasmodium falciparum strain 3D7 - doxy 25h


title: control 30h

description: control 30h

source_name: Plasmodium falciparum strain 3D7 - control 30h


title: control 55h

description: control 55h

source_name: Plasmodium falciparum strain 3D7 - control 55h

source_name: Plasmodium falciparum strain 3D7 total RNA reference pool


title: control 0h

description: control 0h

source_name: Plasmodium falciparum strain 3D7 - control 0h


title: doxy 35h

description: doxy 35h

source_name: Plasmodium falciparum strain 3D7 - doxy 35h


title: control 20h

description: control 20h

source_name: Plasmodium falciparum strain 3D7 - control 20h


title: control 5h

description: control 5h

source_name: Plasmodium falciparum strain 3D7 - control 5h


title: control 50h

description: control 50h

source_name: Plasmodium falciparum strain 3D7 - control 50h


title: control 10h

description: control 10h

source_name: Plasmodium falciparum strain 3D7 - control 10h


title: IL-4 vs IL-4 M. tuberculosis 4h

description: color swap ratio experiment

hyb_protocol: Before hybridization, 1.25 µg labeled cRNA of each product were fragmented and mixed with control targets and hybridization buffer according to the supplier's protocol (Agilent Technologies). Hybridizations were carried out for approximately 17 h at 60°C. The slides were washed according to the manufacturer's manual and scanning of microarrays was performed with 5 µm resolution using a DNA microarray laser scanner (Agilent Technologies).In order to compensate dye specific effects, and to ensure statistically relevant data, a color swap dye reversal was performed.

scan_protocol: Features were extracted with an image analysis tool Version A 6.1.1 (Agilent Technologies) using default settings. Data analysis was carried out on the Rosetta Inpharmatics platform Resolve. Ratio profiles were generated from raw scan data by a processing pipeline, which includes pre-processing (Feature Extraction) and post-processing (Rosetta Resolver) of data and error model adjustments to the raw scan data. Ratio profiles were combined in an error-weighted fashion (Rosetta Resolver) to create ratio experiments, and ratio experiments consisted of one or more ratio profiles.

data_processing: Rosetta Resolver 5.1

source_name: IL-4 BMM

label_protocol: RNA labeling was performed with a Fluorescent Linear Amplification Kit (Agilent Technologies). cDNA was reverse transcribed from 4 µg total RNA with an oligo-dT-T7 promoter primer and MMLV-RT. Second strand synthesis was carried out with random hexamers. Fluorescent antisense cRNA was synthesized with cyanine 3-CTP (Cy3-CTP) and T7 polymerase.

growth_protocol: Bone marrow cells were flushed from femura and tibiae of 8-12 wk old female C57/BL6 mice and differentiated into macrophages by incubation in DMEM supplemented with glutamine, sodium pyruvate, hepes buffer, 10% FCS, 5% horse serum, and 20% L929 fibroblast conditioned medium for 6 d.

extract_protocol: 10exp7 infected cells per condition and time point were lysed in 2 ml Trizol (Gibco). RNA was precipitated and purified with RNeasy (Qiagen). To eliminate DNA contaminations, RNA preparations were treated with DNAse I (Invitrogen) and purified with RNeasy (Qiagen). RNA integrity and quantities were subsequently monitored with a Bioanalyzer 2100 (Agilent Technologies, Palo Alto, CA, US).

treatment_protocol: BMM were treated with 1000 U/ml IL-4 for 24+4 h.

tag: strain

tag: gender

value: female

tag: age

value: 90 days

source_name: IL-4 BMM M.tuberculosis 4h

label_protocol: RNA labeling was performed with a Fluorescent Linear Amplification Kit (Agilent Technologies). cDNA was reverse transcribed from 4 µg total RNA with an oligo-dT-T7 promoter primer and MMLV-RT. Second strand synthesis was carried out with random hexamers. Fluorescent antisense cRNA was synthesized with cyanine 5-CTP (Cy5-CTP) and T7 polymerase.

treatment_protocol: BMM were treated with 1000 U/ml IL-4 for 24. Subsequently, M. tuberculosis H37Rv was taken from a fresh late-logarithmic culture, washed once in DMEM, and added at an MOI of 10 for 4 h.


title: Primitive hematopoietic stem cells

city: Essen

first: Ludger

last: Klein-Hitpass

address: Virchowstr. 173

department: Universitaetsklinikum

institute: Institut fuer Zellbiologie

description: Gene expression studies from hematopoietic stem cell (HSC) populations purified to variable degrees have defined a set of stemness genes. The present study describes the construction and comparative molecular analysis of l-phage cDNA libraries from highly purified primitive HSCs (PHSCs) which retained their long term repopulating activities (LTRAs), and from maturing HSCs (MHSCs) which were largely depleted of LTRAs. Library inserts were amplified and tagged by a T7 RNA polymerase promoter and used to generate biotinylated cRNA for Microarray hybridization. Microarray analysis of the libraries confirmed previous results but also revealed an unforseen preferential expression of translation and metabolism associated genes in the PHSCs. Therefore these data indicate that HSCs are quiescent only in regard of proliferative activities, but are in a state of readiness to provide the metabolic and translational activities required following induction of proliferation by factors which induce differentiation and exit from the HSC pool.

hyb_protocol: Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on MOE430A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.

source_name: FACS sorted stem cells from mouse bone marrow

label_protocol: Biotinylated cRNA was generated using the ENZO High Yield Transcript Labelling Kit programmed with 0.5 microgramm of T7 promoter tagged library inserts

growth_protocol: 30 min in vitro culture before FACS separation

extract_protocol: Isolation of total RNA was performed with RNAzol according to the manufacture's recommendations. ). cDNA was generated by RT-PCR with polyA-priming (Superscript II, Invitrogen Life Technologies, Carlsbad, CA), PCR amplified (Advantage cDNA PCR Kit, Clontech, USA), size fractionated (Chroma Spin-400 Columns, Clontech, Palo Alto, CA), cloned directionally into the SfiIA and SfiIB sites of a l-phage vector (TriplEx2, Clontech, Palo Alto, CA, USA) and packed using a high efficiency extract (Gigapack III Gold, Stratagene, La Jolla, CA, USA).

treatment_protocol: no treatment

tag: C57BL/6J(Ly5.1) mice 6-12 weeks of age


title: Lung from SM22-dnBMPR2 inducible transgenic females activated 8 weeks

status: Public on Jul 10 2006

city: Nashville

first: James

last: West

state: TN

address: 4200 E 9TH Ave, Box B133

department: Medicine

institute: Vanderbilt University

hyb_protocol: Mouse Genome 430 2.0 microarrays (Affymetrix, Foster City, CA) were hybridized with 20 �g cRNA. Target hybridization, washing, staining, and scanning probe arrays were done following an Affymetrix GeneChip Expression Analysis Manual.

data_processing: dChip, using PM/MM algorithm

source_name: lung

label_protocol: First and second strand complimentary DNA was synthesized using standard techniques.  Biotin-labeled antisense complimentary RNA was produced by an in vitro transcription reaction.

extract_protocol: Lung tissues were flash-frozen in liquid nitrogen within minutes of death, and RNA extracted using an RNeasy kit (Qiagen)

tag: A pool of RNA from lung from three female mice, raised at Denver altitude (nearly normoxic), with SM22-rtTA x tetO7-BMPR2delx4+ transgene activated for 8 weeks


title: Lung from SM22-dnBMPR2 inducible transgenic males activated 8 weeks

tag: A pool of RNA from lung from three male mice, raised at Denver altitude (nearly normoxic), with SM22-rtTA x tetO7-BMPR2delx4+ transgene activated for 8 weeks; mice are 12 weeks old when sac'd.


title: Lung from SM22-dnBMPR2 inducible transgenic females activated 1 week

hyb_protocol: Mouse Genome 430 2.0 microarrays (Affymetrix, Foster City, CA) were hybridized with 20 µg cRNA. Target hybridization, washing, staining, and scanning probe arrays were done following an Affymetrix GeneChip Expression Analysis Manual.

source_name: Lung

tag: A pool of RNA from lung from three female mice, raised at Denver altitude (nearly normoxic), with SM22-rtTA x tetO7-BMPR2delx4+ transgene activated for 1 week


title: Graf_2-9 Non-Dev and distal_strain129

status: Public on Jul 08 2006

city: Cincinnati

first: Bruce

middle: J

last: Aronow

state: OH

institute: Cincinnati Children's Hospital Medical Center

description: Sample type: colorectal tumors from AOM, ApcMin/+, Smad3-/- and Tgfb1-/- x Rag2-/- animal models of colorectal cancer, normal adult colon and normal embryonic colon (i.e. samples from embyonic stages E13.5, E14.5, E15.5, E16.5, E17.5 and E18.5).

data_processing: All datasets were normalized by Lowess intensity-dependent normalization as implemented in GeneSpring 7.2. Then, depending on the biological question to be addressed, the samples were referenced either to the median gene expression value across all the samples or to expression levels of normal control samples.

source_name: Colon tissue

tag: Normal mouse colon samples at different developmental stages.

source_name: Universal RNA reference

tag: Total RNA from E17 whole mouse embryos was used as universal reference


title: Graf_2-5 Non-Dev and middle_strain129


title: Maturing hematopoietic stem cells

tag: Phenotypic isolation of hematopoietic stem cells as [RholoHoesp]VsLin-c-kit+Sca-1+ and RhohiHoespLin-c-kit+Sca-1+


title: UW_8_2620 Non-Dev and distal_strainBR-F1 2620


title: Graf_3-14 Non-Dev and distal_strain129


title: UW_6_2748 Non-Dev and distal_strainSWR-F1 2748


title: AOM_17 Non-Dev and distal_strainAXB15


title: UW_3_2778 Non-Dev and distal_strainSWR-F1


title: Control Male SM22-rtTA only Lung

description: Control Male SM22-rtTA only Lung

tag: A pool of RNA from lung from three male mice with SM22-rtTA transgene on an FVB/N background, raised at Denver altitude (nearly normoxic), fed doxycycline for 8 weeks and sac'd at 12 weeks of age.


title: AOM_4 Non-Dev and distal_strainBXA11


title: Graf_8-4 Non-Dev and distal_strain129


title: UW_7_2620 Non-Dev and middle_strainBR-F1 2620


title: Lung from SM22-dnBMPR2 inducible transgenic males activated 1 week

tag: A pool of RNA from lung from three male mice, raised at Denver altitude (nearly normoxic), with SM22-rtTA x tetO7-BMPR2delx4+ transgene activated for 1 week. These mice have elevated RV pressures, and dysfunctional pulmonary vascular reactivity.


title: AOM_11 Non-Dev and distal_strainBXA2


title: Control Female FVB/N

description: Control Female FVB/N

tag: A pool of RNA from lung from three female mice with SM22-rtTA transgene on an FVB/N background, raised at Denver altitude (nearly normoxic), fed doxycycline for 8 weeks.


title: AOM_10 Non-Dev and distal_strainBXA2


title: AOM_3 Non-Dev and distal_strainBXA11


title: 18.5 Dev and colon_strainCD-1 1	 b


title: 16.5 Dev and colon_strainCD-1 1	 b


title: 8wk Adult and C57BL6_strainC57BL6 2


title: wild-type control strain, biological rep 4

source_name: haploid Saccharomyces strain derived from W303a

tag: Genotype

tag: Growth


title: 15.5 Dev and colon_strainCD-1 1	 b


title: 14.5 Dev and colon_strainCD-1 2 b


title: 18.5 Dev and colon_strainCD-1 2	 b


title: 13.5 Dev and colon_strainCD-1 3	 b


title: 16.5 Dev and colon_strainCD-1 2	 b


title: 17.5 Dev and colon_strainCD-1 1	 b


title: 18.5 Dev and colon_strainCD-1 3	 b


title: 18.5 Dev and colon_strainC57BL6	1 b


title: 17.5 Dev and colon_strainC57BL6	3 b


title: 17.5 Dev and colon_strainCD-1 2	 b


title: 13.5 Dev and colon_strainCD-1 1	 b


title: 17.5 Dev and colon_strainCD-1 3	 b


title: 16.5 Dev and colon_strainCD-1 3	 b


title: 8wk Adult and C57BL6_strainC57BL6 1


title: 8wk Adult and C57BL6_strainC57BL6 3


title: 14.5 Dev and colon_strainCD-1 1 b


title: 15.5 Dev and colon_strainCD-1 2	 b


title: AOM_2a Non-Dev and distal_strainAXB5


title: 18.5 Dev and colon_strainC57BL6	2 b


title: 13.5 Dev and colon_strainCD-1 2	 b


title: 15.5 Dev and colon_strainCD-1 3	 b


title: 14.5 Dev and colon_strainCD-1 3	 b


title: 18.5 Dev and colon_strainC57BL6	3 b


title: 15.5 Dev and colon_strainC57BL6	3 b


title: 14.5 Dev and colon_strainC57BL6	2 b


title: 17.5 Dev and colon_strainC57BL6	2 b


title: 16.5 Dev and colon_strainC57BL6	2 b


title: 13.5 Dev and colon_strainC57BL6	3 b


title: 17.5 Dev and colon_strainC57BL6	1 b


title: Coffey 34-3 Non-Dev and middle_strain129	 b


title: 15.5 Dev and colon_strainC57BL6	2 b


title: 13.5 Dev and colon_strainC57BL6	2 b


title: 16.5 Dev and colon_strainC57BL6	1 b


title: 15.5 Dev and colon_strainC57BL6	1 b


title: Coffey 34-2 Non-Dev and 129_strain129	 b


title: 14.5 Dev and colon_strainC57BL6	3 b


title: UNC_9M0 Non-Dev and cecal_strain129	 b


title: UC_64 Non-Dev and unk_strainB6	 b


title: Coffey Non-Dev and cecal_strain129	 b


title: 14.5 Dev and colon_strainC57BL6	1 b


title: Coffey 34-4 Non-Dev and rectum_strain129	 b


title: 13.5 Dev and colon_strainC57BL6	1 b


title: Graf_3-7 (3) Non-Dev and cecal_strain129	 b


title: UC_47 Non-Dev and unk_strainB6	 b


title: AOM_29 Non-Dev and unk_strainBXA11	 b


title: AOM_25a Non-Dev and unk_strainBXA11	 b


title: Graf_8-4 Non-Dev and cecal_strain129	 b


title: Coffey 34-1 Non-Dev and cecal_strain129	 b


title: AOM_26a Non-Dev and unk_strainBXA11	 b


title: AOM_13 Non-Dev and unk_strainunknown	 b


title: AOM_16 Non-Dev and unk_strainAXB13	 b


title: AOM_16 Non-Dev and unk_strainAXB15	 b


title: Doetschmann3 Non-Dev and adenocarcinoma_strainmix	 b


title: Doetschmann2 Non-Dev and adenocarcinoma_strainmix	 b


title: AOM_15 Non-Dev and unk_strainAXB14	 b


title: Doetschmann1 Non-Dev and adenoma_strainmix	 b


title: AOM_14quest Non-Dev and unk_strainquest	 b


title: UC_78 Non-Dev and unk_strainB6	 b


title: UC_84 Non-Dev and unk_strainB6	 b


title: Graf_3-7 (4) Non-Dev and cecal_strain129	 b


title: Graf_3-14 Non-Dev and distal_strain129	 b


title: doxy 5h

description: doxy 5h

source_name: Plasmodium falciparum strain 3D7 - doxy 5h

tag: Plasmodium falciparum strain 3D7


title: Graf_2-5 Non-Dev and middle_strain129	 b


title: AOM_1a Non-Dev and unk_strainAXB5	 b


title: Graf_2-9 Non-Dev and distal_strain129	 b


title: UW_8_2620 Non-Dev and distal_strainBR-F1 2620	 b


title: Graf_8-4 Non-Dev and distal_strain129	 b


title: UC_2 Non-Dev and unk_strainB6	 b


title: UW_7_2620 Non-Dev and middle_strainBR-F1 2620	 b


title: AOM_17 Non-Dev and distal_strainAXB15	 b


title: AOM_3 Non-Dev and distal_strainBXA11	 b


title: UW_6_2748 Non-Dev and distal_strainSWR-F1 2748	 b


title: UW_3_2778 Non-Dev and distal_strainSWR-F1	 b


title: AOM_4 Non-Dev and distal_strainBXA11	 b


title: AOM_10 Non-Dev and distal_strainBXA2	 b


title: AOM_2a Non-Dev and distal_strainAXB5	 b


title: Coffey 34-3 Non-Dev and middle_strain129


title: Coffey 34-2 Non-Dev and 129_strain129


title: UC_47 Non-Dev and unk_strainB6


title: 8wk Adult and C57BL6_strainC57BL6 1	 b


title: 8wk Adult and C57BL6_strainC57BL6 2	 b


title: Coffey 34-4 Non-Dev and rectum_strain129


title: AOM_11 Non-Dev and distal_strainBXA2	 b


title: Coffey 34-1 Non-Dev and cecal_strain129


title: AOM_29 Non-Dev and unk_strainBXA11


title: UC_64 Non-Dev and unk_strainB6


title: Coffey Non-Dev and cecal_strain129


title: 16.5 Dev and colon_strainC57BL6	3 b


title: AOM_26a Non-Dev and unk_strainBXA11


title: UC_2 Non-Dev and unk_strainB6


title: 8wk Adult and C57BL6_strainC57BL6 3	 b


title: Graf_8-4 Non-Dev and cecal_strain129


title: AOM_16 Non-Dev and unk_strainAXB15


title: AOM_25a Non-Dev and unk_strainBXA11


title: Doetschmann1 Non-Dev and adenoma_strainmix


title: UNC_9M0 Non-Dev and cecal_strain129


title: Graf_3-7 (3) Non-Dev and cecal_strain129


title: AOM_15 Non-Dev and unk_strainAXB14


title: Doetschmann2 Non-Dev and adenocarcinoma_strainmix


title: Doetschmann3 Non-Dev and adenocarcinoma_strainmix


title: Graf_3-7 (4) Non-Dev and cecal_strain129


title: UC_78 Non-Dev and unk_strainB6


title: UC_84 Non-Dev and unk_strainB6


title: AOM_16 Non-Dev and unk_strainAXB13


title: Human Keratinocytes Ad-GFP

city: Epalinges

last: Dotto

state: VD

address: 153 Chemin de Bovaress

country: Switzerland

institute: Lausanne University

description: Primary human keratinocytes infected with adenoviruses containing the GFP gene

data_processing: Mas5 software

label: biotin labeling

source_name: Primary Human keratinocytes

tag: Primary Human keratinocytes


title: AOM_1a Non-Dev and unk_strainAXB5


title: Human Keratinocytes Ad-Notch1

description: Primary human keratinocytes infected with adenoviruses containing the Notch1 gene

source_name: Human keratinocytes


title: Mouse Keratinocytes Ad-Notch1

description: Primary mouse keratinocytes infected with adenoviruses containing the Notch1 gene

source_name: Primary Mouse Keratinocytes

tag: Primary Mouse Keratinocytes


title: AOM_13 Non-Dev and unk_strainunknown


title: Mouse keratinocytes Ad-GFP

description: Primary mouse keratinocytes infected with adenoviruses containing the GFP gene


title: In vivo grown Schistosomula to in vitro grown Schistosomula comparison, replicate 3 of 3 from experiment 8

status: Public on Jul 07 2006

city: Forest Hill

first: Russell

middle: Leigh

last: McInnes

state: Vic

address: 347 Burwood Hwy

department: LSCA

institute: Agilent Technologies

description: In vivo grown S. japonicum lung schistosomula (Chinese strain) V in vitro cultured S. japonicum schistosomula (Chinese strain)

hyb_protocol: Agilent oligo hyb protocol for Gene Expression version 2.2

scan_protocol: Microarrays were scanned using the Agilent DNA microarray scanner (G2565BA)

data_processing: Agilent Feature Extraction software ver 8.5, protocol GE2_22k_1005

organism: Schistosoma japonicum

label_protocol: Amino Allyl MessageAmp II aRNA Kit (with modifications - contact authors)


title: f2#350 versus pool Mouse Brain tissue

city: Los Angeles

first: Leslie

last: Ingram-drake

department: Medicine/MIMG/Human Genetics

institute: UCLA

description: Brain tissue from 330 F2 female and male mice (animals fed a high fat "Western" diet from 8-24 weeks of age.) C57BL/J6 and C3H/HeJ on ApoE null backgrounds.  All sample were compared to a common pool created from equal portions of RNA from each of the samples.

data_processing: Arrays were quantified on the basis of spot intensity relative to background (Qhyb program, Rosetta), adjusted for experimental variation between arrays using average intensity over multiple channels, and fitted to an error model to determine significance (type I error).  Gene expression is reported as the ratio of the mean log10 intensity (mlratio) relative to the pool derived from 150 mice randomly selected from the F2 population. Normalized values are the reported as the ratio of the mlratio relative to the pool.

tag: Strain:C57BL/6J and C3H/HeJ on ApoE null Age:24 weeks Gender:male

source_name: pool

tag: Strain:C57BL/6J and C3H/HeJ on ApoE null Age:24 weeks (150 randomly selected F2)


title: In vivo grown Schistosomula to in vitro grown Schistosomula comparison, replicate 1 of 3 from experiment 8

source_name: In vivo grown S. japonicum lung schistosomula (Chinese strain)

source_name: in vitro cultured S. japonicum schistosomula (Chinese strain)


title: f2#349 versus pool Mouse Brain tissue


title: Schistosoma interspecies comparison, replicate 4 of 4 from experiment 1

description: Adult mixed sex S. mansoni V adult mixed sex S. japonicum

organism: Schistosoma mansoni

source_name: Adult mixed sex S. mansoni

label_protocol: Agilent Low RNA Input linear amplification kit

tag: Adult mixed sex S. mansoni

source_name: Adult mixed sex S. japonicum

tag: Adult mixed sex S. japonicum


title: f2#345 versus pool Mouse Brain tissue


title: f2#348 versus pool Mouse Brain tissue


title: Schistosoma interstrain comparison, replicate 4 of 4 from experiment 2

description: Mixed sex adult S. japonicum (Philippine strain) V Mixed sex adult S. japonicum (Chinese strain)

source_name: Adult mixed sex S. japonicum philippine strain

source_name: Adult mixed sex S. japonicum chinese strain


title: Schistosoma interspecies comparison, replicate 3 of 4 from experiment 1


title: Schistosoma interstrain same sex comparison, replicate 1 of 2 from experiment 3

description: Adult male S. japonicum (Philippine strain)  V Adult male S. japonicum (Chinese strain)

source_name: Adult male S. japonicum chinese strain

tag: Adult male S. japonicum chinese strain

source_name: Adult male S. japonicum philippine strain


title: Lung-stage Schistosomula to adult worm comparison, replicate 2 of 2 from experiment 7

description: In vivo grown S. japonicum lung schistosomula (Chinese strain) V adult mixed sex schistosome (Chinese strain)

source_name: Adult-stage S. japonicum (Chinese strain)

source_name: Lung-stage schistosomula of S. japonicum (Chinese strain)


title: Schistosoma Male to Female (sex) comparison, replicate 1 of 2 from experiment 6

description: Adult Male S. japonicum (philippine strain) V Adult Female S. japonicum (philippine strain)

source_name: Adult female S. japonicum (Philippine strain)

source_name: Adult male S. japonicum (Philippine strain)


title: f2#353 versus pool Mouse Brain tissue


title: f2#346 versus pool Mouse Brain tissue


title: f2#347 versus pool Mouse Brain tissue


title: Lung-stage Schistosomula to adult worm comparison, replicate 1 of 2 from experiment 7

tag: Lung-stage schistosomula of S. japonicum (Chinese strain)

tag: Adult-stage S. japonicum (Chinese strain)


title: Schistosoma interstrain comparison, replicate 3 of 4 from experiment 2

tag: Adult mixed sex S. japonicum philippine strain

tag: Adult mixed sex S. japonicum chinese strain


title: Schistosoma interspecies comparison, replicate 1 of 4 from experiment 1


title: Schistosoma interstrain same sex female comparison, replicate 2 of 2 from experiment 4

description: Adult female S. japonicum (Chinese strain) V Adult female S. japonicum (Philippine Strain)

source_name: Adult female S. japonicum chinese strain

source_name: Adult female S. japonicum philippine strain


title: Schistosoma Male to Female (sex) comparison, replicate 2 of 2 from experiment 6

tag: Adult male S. japonicum (Philippine strain)

tag: Adult female S. japonicum (Philippine strain)


title: Schistosoma interstrain comparison, replicate 2 of 4 from experiment 2


title: Schistosoma interstrain comparison, replicate 1 of 4 from experiment 2


title: Schistosoma interspecies comparison, replicate 2 of 4 from experiment 1


title: f2#343 versus pool Mouse Brain tissue


title: Schistosoma Male to Female (sex) comparison, replicate 1 of 2 from experiment 5

description: Adult Male S. japonicum (chinese strain) V Adult Female S. japonicum (chinese strain)

source_name: Adult male S. japonicum (Chinese strain)

source_name: Adult female S. japonicum (Chinese strain)


title: f2#344 versus pool Mouse Brain tissue

source_name: pool


title: In vivo grown Schistosomula to in vitro grown Schistosomula comparison, replicate 2 of 3 from experiment 8

source_name: In vivo grown S. japonicum lung schistosomula (Chinese strain)

tag: in vitro cultured S. japonicum schistosomula (Chinese strain)


title: f2#399 versus pool Mouse Brain tissue

tag: Strain:C57BL/6J and C3H/HeJ on ApoE null Age:24 weeks Gender:Female


title: f2#335 versus pool Mouse Brain tissue


title: Schistosoma Male to Female (sex) comparison, replicate 2 of 2 from experiment 5

tag: Adult female S. japonicum (Chinese strain)

tag: Adult male S. japonicum (Chinese strain)


title: f2#338 versus pool Mouse Brain tissue


title: f2#337 versus pool Mouse Brain tissue


title: f2#336 versus pool Mouse Brain tissue


title: f2#332 versus pool Mouse Brain tissue


title: f2#323 versus pool Mouse Brain tissue


title: f2#329 versus pool Mouse Brain tissue


title: f2#334 versus pool Mouse Brain tissue


title: f2#333 versus pool Mouse Brain tissue


title: f2#327 versus pool Mouse Brain tissue


title: f2#325 versus pool Mouse Brain tissue


title: f2#342 versus pool Mouse Brain tissue


title: f2#310 versus pool Mouse Brain tissue


title: f2#312 versus pool Mouse Brain tissue


title: f2#309 versus pool Mouse Brain tissue


title: f2#341 versus pool Mouse Brain tissue


title: f2#331 versus pool Mouse Brain tissue


title: f2#322 versus pool Mouse Brain tissue


title: f2#330 versus pool Mouse Brain tissue


title: f2#321 versus pool Mouse Brain tissue


title: f2#318 versus pool Mouse Brain tissue


title: f2#320 versus pool Mouse Brain tissue


title: f2#316 versus pool Mouse Brain tissue


title: f2#313 versus pool Mouse Brain tissue


title: f2#298 versus pool Mouse Brain tissue


title: f2#304 versus pool Mouse Brain tissue


title: f2#295 versus pool Mouse Brain tissue


title: f2#297 versus pool Mouse Brain tissue


title: f2#306 versus pool Mouse Brain tissue


title: f2#303 versus pool Mouse Brain tissue


title: Schistosoma interstrain same sex comparison, replicate 2 of 2 from experiment 3

tag: Adult male S. japonicum philippine strain


title: Schistosoma interstrain same sex female comparison, replicate 1 of 2 from experiment 4

tag: Adult female S. japonicum philippine strain

tag: Adult female S. japonicum chinese strain


title: f2#291 versus pool Mouse Brain tissue

tag: Strain:C57BL/6J and C3H/HeJ on ApoE null Age:24 weeks Gender:male

tag: Strain:C57BL/6J and C3H/HeJ on ApoE null Age:24 weeks (150 randomly selected F2)


title: f2#290 versus pool Mouse Brain tissue


title: f2#296 versus pool Mouse Brain tissue


title: f2#299 versus pool Mouse Brain tissue


title: f2#300 versus pool Mouse Brain tissue


title: f2#278 versus pool Mouse Brain tissue


title: f2#286 versus pool Mouse Brain tissue


title: f2#283 versus pool Mouse Brain tissue


title: f2#288 versus pool Mouse Brain tissue


title: f2#292 versus pool Mouse Brain tissue


title: f2#282 versus pool Mouse Brain tissue


title: f2#307 versus pool Mouse Brain tissue


title: f2#289 versus pool Mouse Brain tissue


title: f2#277 versus pool Mouse Brain tissue


title: f2#287 versus pool Mouse Brain tissue


title: f2#273 versus pool Mouse Brain tissue


title: f2#302 versus pool Mouse Brain tissue


title: f2#279 versus pool Mouse Brain tissue


title: f2#281 versus pool Mouse Brain tissue


title: f2#275 versus pool Mouse Brain tissue


title: f2#267 versus pool Mouse Brain tissue


title: f2#255 versus pool Mouse Brain tissue


title: f2#266 versus pool Mouse Brain tissue


title: f2#271 versus pool Mouse Brain tissue


title: f2#258 versus pool Mouse Brain tissue


title: f2#254 versus pool Mouse Brain tissue


title: f2#272 versus pool Mouse Brain tissue


title: f2#259 versus pool Mouse Brain tissue


title: f2#262 versus pool Mouse Brain tissue


title: f2#252 versus pool Mouse Brain tissue


title: f2#263 versus pool Mouse Brain tissue


title: f2#251 versus pool Mouse Brain tissue


title: f2#264 versus pool Mouse Brain tissue


title: f2#269 versus pool Mouse Brain tissue


title: f2#247 versus pool Mouse Brain tissue


title: f2#250 versus pool Mouse Brain tissue


title: f2#249 versus pool Mouse Brain tissue


title: f2#261 versus pool Mouse Brain tissue


title: f2#253 versus pool Mouse Brain tissue


title: f2#260 versus pool Mouse Brain tissue


title: f2#257 versus pool Mouse Brain tissue


title: f2#243 versus pool Mouse Brain tissue


title: f2#242 versus pool Mouse Brain tissue


title: f2#244 versus pool Mouse Brain tissue


title: f2#236 versus pool Mouse Brain tissue


title: f2#234 versus pool Mouse Brain tissue


title: f2#231 versus pool Mouse Brain tissue


title: f2#232 versus pool Mouse Brain tissue


title: f2#241 versus pool Mouse Brain tissue


title: f2#229 versus pool Mouse Brain tissue


title: f2#238 versus pool Mouse Brain tissue


title: f2#239 versus pool Mouse Brain tissue


title: f2#230 versus pool Mouse Brain tissue


title: f2#225 versus pool Mouse Brain tissue


title: f2#215 versus pool Mouse Brain tissue


title: f2#219 versus pool Mouse Brain tissue


title: f2#221 versus pool Mouse Brain tissue


title: f2#216 versus pool Mouse Brain tissue


title: f2#223 versus pool Mouse Brain tissue


title: f2#214 versus pool Mouse Brain tissue


title: f2#224 versus pool Mouse Brain tissue


title: f2#208 versus pool Mouse Brain tissue


title: f2#209 versus pool Mouse Brain tissue


title: f2#203 versus pool Mouse Brain tissue


title: f2#212 versus pool Mouse Brain tissue


title: f2#199 versus pool Mouse Brain tissue


title: f2#207 versus pool Mouse Brain tissue


title: f2#194 versus pool Mouse Brain tissue


title: f2#198 versus pool Mouse Brain tissue


title: f2#211 versus pool Mouse Brain tissue


title: f2#197 versus pool Mouse Brain tissue


title: f2#191 versus pool Mouse Brain tissue


title: f2#193 versus pool Mouse Brain tissue


title: f2#201 versus pool Mouse Brain tissue


title: f2#185 versus pool Mouse Brain tissue


title: f2#196 versus pool Mouse Brain tissue


title: f2#190 versus pool Mouse Brain tissue


title: f2#202 versus pool Mouse Brain tissue


title: f2#188 versus pool Mouse Brain tissue


title: f2#186 versus pool Mouse Brain tissue


title: f2#195 versus pool Mouse Brain tissue


title: f2#177 versus pool Mouse Brain tissue


title: f2#187 versus pool Mouse Brain tissue


title: f2#213 versus pool Mouse Brain tissue


title: f2#183 versus pool Mouse Brain tissue


title: f2#180 versus pool Mouse Brain tissue


title: f2#192 versus pool Mouse Brain tissue


title: f2#178 versus pool Mouse Brain tissue


title: f2#200 versus pool Mouse Brain tissue


title: f2#176 versus pool Mouse Brain tissue


title: f2#165 versus pool Mouse Brain tissue


title: f2#172 versus pool Mouse Brain tissue


title: f2#174 versus pool Mouse Brain tissue


title: f2#171 versus pool Mouse Brain tissue


title: f2#173 versus pool Mouse Brain tissue


title: f2#164 versus pool Mouse Brain tissue


title: f2#161 versus pool Mouse Brain tissue


title: f2#162 versus pool Mouse Brain tissue


title: f2#175 versus pool Mouse Brain tissue


title: f2#168 versus pool Mouse Brain tissue


title: f2#170 versus pool Mouse Brain tissue


title: f2#156 versus pool Mouse Brain tissue


title: f2#163 versus pool Mouse Brain tissue


title: f2#154 versus pool Mouse Brain tissue


title: f2#151 versus pool Mouse Brain tissue


title: f2#159 versus pool Mouse Brain tissue


title: f2#169 versus pool Mouse Brain tissue


title: f2#152 versus pool Mouse Brain tissue


title: f2#157 versus pool Mouse Brain tissue


title: f2#158 versus pool Mouse Brain tissue


title: f2#150 versus pool Mouse Brain tissue


title: f2#148 versus pool Mouse Brain tissue


title: f2#147 versus pool Mouse Brain tissue


title: f2#146 versus pool Mouse Brain tissue


title: f2#149 versus pool Mouse Brain tissue


title: f2#145 versus pool Mouse Brain tissue


title: f2#153 versus pool Mouse Brain tissue


title: f2#142 versus pool Mouse Brain tissue


title: f2#141 versus pool Mouse Brain tissue


title: f2#144 versus pool Mouse Brain tissue


title: f2#119 versus pool Mouse Brain tissue


title: f2#143 versus pool Mouse Brain tissue


title: f2#87 versus pool Mouse Brain tissue


title: f2#127 versus pool Mouse Brain tissue


title: f2#104 versus pool Mouse Brain tissue


title: f2#94 versus pool Mouse Brain tissue


title: f2#121 versus pool Mouse Brain tissue


title: f2#122 versus pool Mouse Brain tissue


title: f2#115 versus pool Mouse Brain tissue


title: f2#123 versus pool Mouse Brain tissue


title: f2#113 versus pool Mouse Brain tissue


title: f2#78 versus pool Mouse Brain tissue


title: f2#83 versus pool Mouse Brain tissue


title: f2#105 versus pool Mouse Brain tissue


title: f2#107 versus pool Mouse Brain tissue


title: f2#110 versus pool Mouse Brain tissue


title: f2#95 versus pool Mouse Brain tissue


title: f2#82 versus pool Mouse Brain tissue


title: f2#88 versus pool Mouse Brain tissue


title: f2#91 versus pool Mouse Brain tissue


title: f2#75 versus pool Mouse Brain tissue


title: f2#77 versus pool Mouse Brain tissue


title: f2#109 versus pool Mouse Brain tissue


title: f2#76 versus pool Mouse Brain tissue


title: f2#73 versus pool Mouse Brain tissue


title: f2#72 versus pool Mouse Brain tissue


title: f2#89 versus pool Mouse Brain tissue


title: f2#71 versus pool Mouse Brain tissue


title: f2#67 versus pool Mouse Brain tissue


title: f2#55 versus pool Mouse Brain tissue


title: f2#53 versus pool Mouse Brain tissue


title: f2#61 versus pool Mouse Brain tissue


title: f2#66 versus pool Mouse Brain tissue


title: f2#60 versus pool Mouse Brain tissue


title: f2#56 versus pool Mouse Brain tissue


title: f2#70 versus pool Mouse Brain tissue


title: f2#57 versus pool Mouse Brain tissue


title: f2#58 versus pool Mouse Brain tissue


title: f2#64 versus pool Mouse Brain tissue


title: f2#62 versus pool Mouse Brain tissue


title: f2#54 versus pool Mouse Brain tissue


title: f2#68 versus pool Mouse Brain tissue


title: f2#63 versus pool Mouse Brain tissue


title: f2#52 versus pool Mouse Brain tissue


title: f2#51 versus pool Mouse Brain tissue


title: f2#48 versus pool Mouse Brain tissue


title: f2#45 versus pool Mouse Brain tissue


title: f2#50 versus pool Mouse Brain tissue


title: f2#49 versus pool Mouse Brain tissue


title: f2#40 versus pool Mouse Brain tissue


title: f2#43 versus pool Mouse Brain tissue


title: f2#42 versus pool Mouse Brain tissue


title: f2#39 versus pool Mouse Brain tissue


title: f2#25 versus pool Mouse Brain tissue


title: f2#44 versus pool Mouse Brain tissue


title: f2#36 versus pool Mouse Brain tissue


title: f2#27 versus pool Mouse Brain tissue


title: f2#26 versus pool Mouse Brain tissue


title: f2#31 versus pool Mouse Brain tissue


title: f2#30 versus pool Mouse Brain tissue


title: f2#34 versus pool Mouse Brain tissue


title: f2#38 versus pool Mouse Brain tissue


title: f2#28 versus pool Mouse Brain tissue


title: f2#33 versus pool Mouse Brain tissue


title: f2#22 versus pool Mouse Brain tissue


title: f2#18 versus pool Mouse Brain tissue


title: f2#16 versus pool Mouse Brain tissue


title: f2#11 versus pool Mouse Brain tissue


title: f2#13 versus pool Mouse Brain tissue


title: f2#10 versus pool Mouse Brain tissue


title: f2#14 versus pool Mouse Brain tissue


title: f2#21 versus pool Mouse Brain tissue


title: f2#17 versus pool Mouse Brain tissue


title: f2#7 versus pool Mouse Brain tissue


title: f2#8 versus pool Mouse Brain tissue


title: f2#9 versus pool Mouse Brain tissue


title: f2#4 versus pool Mouse Brain tissue


title: f2#3 versus pool Mouse Brain tissue


title: f2#358 versus pool Mouse Adipose tissue

description: Adipose tissue from 330 F2 female and male mice (animals fed a high fat "Western" diet from 8-24 weeks of age.) C57BL/J6 and C3H/HeJ on ApoE null backgrounds.  All sample were compared to a common pool created from equal portions of RNA from each of the samples.


title: f2#2 versus pool Mouse Brain tissue


title: f2#354 versus pool Mouse Adipose tissue


title: f2#356 versus pool Mouse Adipose tissue


title: f2#359 versus pool Mouse Adipose tissue


title: f2#357 versus pool Mouse Adipose tissue


title: f2#353 versus pool Mouse Adipose tissue


title: f2#351 versus pool Mouse Adipose tissue


title: f2#352 versus pool Mouse Adipose tissue


title: f2#1 versus pool Mouse Brain tissue


title: f2#348 versus pool Mouse Adipose tissue


title: f2#349 versus pool Mouse Adipose tissue


title: f2#345 versus pool Mouse Adipose tissue


title: f2#350 versus pool Mouse Adipose tissue


title: f2#342 versus pool Mouse Adipose tissue


title: f2#341 versus pool Mouse Adipose tissue


title: f2#334 versus pool Mouse Adipose tissue


title: f2#344 versus pool Mouse Adipose tissue


title: f2#337 versus pool Mouse Adipose tissue


title: f2#322 versus pool Mouse Adipose tissue


title: f2#332 versus pool Mouse Adipose tissue


title: f2#340 versus pool Mouse Adipose tissue


title: f2#347 versus pool Mouse Adipose tissue


title: f2#336 versus pool Mouse Adipose tissue


title: f2#343 versus pool Mouse Adipose tissue


title: f2#325 versus pool Mouse Adipose tissue


title: f2#399 versus pool Mouse Adipose tissue


title: f2#319 versus pool Mouse Adipose tissue


title: f2#335 versus pool Mouse Adipose tissue


title: f2#331 versus pool Mouse Adipose tissue


title: f2#327 versus pool Mouse Adipose tissue


title: f2#346 versus pool Mouse Adipose tissue


title: f2#323 versus pool Mouse Adipose tissue


title: f2#320 versus pool Mouse Adipose tissue


title: f2#318 versus pool Mouse Adipose tissue


title: f2#23 versus pool Mouse Brain tissue


title: f2#47 versus pool Mouse Brain tissue


title: f2#326 versus Mouse Adipose tissue


title: f2#355 versus pool Mouse Adipose tissue


title: f2#317 versus pool Mouse Adipose tissue


title: f2#316 versus pool Mouse Adipose tissue


title: f2#310 versus pool Mouse Adipose tissue


title: f2#313 versus pool Mouse Adipose tissue


title: f2#314 versus pool Mouse Adipose tissue


title: f2#312 versus pool Mouse Adipose tissue


title: f2#315 versus pool Mouse Adipose tissue


title: f2#311 versus pool Mouse Adipose tissue


title: f2#309 versus pool Mouse Adipose tissue


title: f2#307 versus pool Mouse Adipose tissue


title: f2#295 versus pool Mouse Adipose tissue


title: f2#294 versus pool Mouse Adipose tissue


title: f2#301 versus pool Mouse Adipose tissue


title: f2#297 versus pool Mouse Adipose tissue


title: f2#308 versus pool Mouse Adipose tissue


title: f2#306 versus pool Mouse Adipose tissue


title: f2#296 versus pool Mouse Adipose tissue


title: f2#24 versus pool Mouse Brain tissue


title: f2#304 versus pool Mouse Adipose tissue


title: f2#302 versus pool Mouse Adipose tissue


title: f2#289 versus pool Mouse Adipose tissue


title: f2#305 versus pool Mouse Adipose tissue


title: f2#298 versus pool Mouse Adipose tissue


title: f2#300 versus pool Mouse Adipose tissue


title: f2#303 versus pool Mouse Adipose tissue


title: f2#290 versus pool Mouse Adipose tissue


title: f2#292 versus pool Mouse Adipose tissue


title: f2#293 versus pool Mouse Adipose tissue


title: f2#287 versus pool Mouse Adipose tissue


title: f2#288 versus pool Mouse Adipose tissue


title: f2#282 versus pool Mouse Adipose tissue


title: f2#285 versus pool Mouse Adipose tissue


title: f2#281 versus pool Mouse Adipose tissue


title: f2#279 versus pool Mouse Adipose tissue


title: f2#284 versus pool Mouse Adipose tissue


title: f2#278 versus pool Mouse Adipose tissue


title: f2#275 versus pool Mouse Adipose tissue


title: f2#273 versus pool Mouse Adipose tissue


title: f2#280 versus pool Mouse Adipose tissue


title: f2#283 versus pool Mouse Adipose tissue


title: f2#276 versus pool Mouse Adipose tissue


title: f2#272 versus pool Mouse Adipose tissue


title: f2#277 versus pool Mouse Adipose tissue


title: f2#269 versus pool Mouse Adipose tissue


title: f2#264 versus pool Mouse Adipose tissue


title: f2#270 versus pool Mouse Adipose tissue


title: f2#268 versus pool Mouse Adipose tissue


title: f2#261 versus pool Mouse Adipose tissue


title: f2#259 versus pool Mouse Adipose tissue


title: f2#260 versus pool Mouse Adipose tissue


title: f2#258 versus pool Mouse Adipose tissue


title: f2#257 versus pool Mouse Adipose tissue


title: f2#274 versus pool Mouse Adipose tissue


title: f2#265 versus pool Mouse Adipose tissue


title: f2#271 versus pool Mouse Adipose tissue


title: f2#262 versus pool Mouse Adipose tissue


title: f2#266 versus pool Mouse Adipose tissue


title: f2#251 versus pool Mouse Adipose tissue


title: f2#249 versus pool Mouse Adipose tissue


title: f2#253 versus pool Mouse Adipose tissue


title: f2#247 versus pool Mouse Adipose tissue


title: f2#263 versus pool Mouse Adipose tissue


title: f2#239 versus pool Mouse Adipose tissue


title: f2#248 versus pool Mouse Adipose tissue


title: f2#250 versus pool Mouse Adipose tissue


title: f2#254 versus pool Mouse Adipose tissue


title: f2#246 versus pool Mouse Adipose tissue


title: f2#235 versus pool Mouse Adipose tissue


title: f2#245 versus pool Mouse Adipose tissue


title: f2#244 versus pool Mouse Adipose tissue


title: f2#238 versus pool Mouse Adipose tissue


title: f2#242 versus pool Mouse Adipose tissue


title: f2#224 versus pool Mouse Adipose tissue


title: f2#237 versus pool Mouse Adipose tissue


title: f2#228 versus pool Mouse Adipose tissue


title: f2#227 versus pool Mouse Adipose tissue


title: f2#231 versus pool Mouse Adipose tissue


title: f2#225 versus pool Mouse Adipose tissue


title: f2#229 versus pool Mouse Adipose tissue


title: f2#232 versus pool Mouse Adipose tissue


title: f2#223 versus pool Mouse Adipose tissue


title: f2#230 versus pool Mouse Adipose tissue


title: f2#220 versus pool Mouse Adipose tissue


title: f2#226 versus pool Mouse Adipose tissue


title: f2#233 versus pool Mouse Adipose tissue


title: f2#222 versus pool Mouse Adipose tissue


title: f2#217 versus pool Mouse Adipose tissue


title: f2#218 versus pool Mouse Adipose tissue


title: f2#219 versus pool Mouse Adipose tissue


title: f2#207 versus pool Mouse Adipose tissue


title: f2#210 versus pool Mouse Adipose tissue


title: f2#209 versus pool Mouse Adipose tissue


title: f2#216 versus pool Mouse Adipose tissue


title: f2#215 versus pool Mouse Adipose tissue


title: f2#211 versus pool Mouse Adipose tissue


title: f2#214 versus pool Mouse Adipose tissue


title: f2#200 versus pool Mouse Adipose tissue


title: f2#213 versus pool Mouse Adipose tissue


title: f2#212 versus pool Mouse Adipose tissue


title: f2#203 versus pool Mouse Adipose tissue


title: f2#196 versus pool Mouse Adipose tissue


title: f2#198 versus pool Mouse Adipose tissue


title: f2#189 versus pool Mouse Adipose tissue


title: f2#193 versus pool Mouse Adipose tissue


title: f2#185 versus pool Mouse Adipose tissue


title: f2#197 versus pool Mouse Adipose tissue


title: f2#195 versus pool Mouse Adipose tissue


title: f2#199 versus pool Mouse Adipose tissue


title: f2#192 versus pool Mouse Adipose tissue


title: f2#183 versus pool Mouse Adipose tissue


title: f2#190 versus pool Mouse Adipose tissue


title: f2#182 versus pool Mouse Adipose tissue


title: f2#187 versus pool Mouse Adipose tissue


title: f2#174 versus pool Mouse Adipose tissue


title: f2#179 versus pool Mouse Adipose tissue


title: f2#178 versus pool Mouse Adipose tissue


title: f2#173 versus pool Mouse Adipose tissue


title: f2#188 versus pool Mouse Adipose tissue


title: f2#175 versus pool Mouse Adipose tissue


title: f2#186 versus pool Mouse Adipose tissue


title: f2#194 versus pool Mouse Adipose tissue


title: f2#184 versus pool Mouse Adipose tissue


title: f2#177 versus pool Mouse Adipose tissue


title: f2#180 versus pool Mouse Adipose tissue


title: f2#172 versus pool Mouse Adipose tissue


title: f2#176 versus pool Mouse Adipose tissue


title: f2#169 versus pool Mouse Adipose tissue


title: f2#181 versus pool Mouse Adipose tissue


title: f2#170 versus pool Mouse Adipose tissue


title: f2#171 versus pool Mouse Adipose tissue


title: f2#168 versus pool Mouse Adipose tissue


title: f2#166 versus pool Mouse Adipose tissue


title: f2#164 versus pool Mouse Adipose tissue


title: f2#165 versus pool Mouse Adipose tissue


title: f2#160 versus pool Mouse Adipose tissue


title: f2#167 versus pool Mouse Adipose tissue


title: f2#150 versus pool Mouse Adipose tissue


title: f2#154 versus pool Mouse Adipose tissue


title: f2#144 versus pool Mouse Adipose tissue


title: f2#149 versus pool Mouse Adipose tissue


title: f2#161 versus pool Mouse Adipose tissue


title: f2#153 versus pool Mouse Adipose tissue


title: f2#159 versus pool Mouse Adipose tissue


title: f2#155 versus pool Mouse Adipose tissue


title: f2#128 versus pool Mouse Adipose tissue


title: f2#163 versus pool Mouse Adipose tissue


title: f2#158 versus pool Mouse Adipose tissue


title: f2#127 versus pool Mouse Adipose tissue


title: f2#147 versus pool Mouse Adipose tissue


title: f2#145 versus pool Mouse Adipose tissue


title: f2#151 versus pool Mouse Adipose tissue


title: f2#122 versus pool Mouse Adipose tissue


title: f2#156 versus pool Mouse Adipose tissue


title: f2#125 versus pool Mouse Adipose tissue


title: f2#121 versus pool Mouse Adipose tissue


title: f2#146 versus pool Mouse Adipose tissue


title: f2#118 versus pool Mouse Adipose tissue


title: f2#123 versus pool Mouse Adipose tissue


title: f2#152 versus pool Mouse Adipose tissue


title: f2#143 versus pool Mouse Adipose tissue


title: f2#126 versus pool Mouse Adipose tissue


title: f2#117 versus pool Mouse Adipose tissue


title: f2#115 versus pool Mouse Adipose tissue


title: f2#113 versus pool Mouse Adipose tissue


title: f2#112 versus pool Mouse Adipose tissue


title: f2#104 versus pool Mouse Adipose tissue


title: f2#114 versus pool Mouse Adipose tissue


title: f2#105 versus pool Mouse Adipose tissue


title: f2#111 versus pool Mouse Adipose tissue


title: f2#110 versus pool Mouse Adipose tissue


title: f2#107 versus pool Mouse Adipose tissue


title: f2#116 versus pool Mouse Adipose tissue


title: f2#141 versus pool Mouse Adipose tissue


title: f2#94 versus pool Mouse Adipose tissue


title: f2#148 versus pool Mouse Adipose tissue


title: f2#91 versus pool Mouse Adipose tissue


title: f2#92 versus pool Mouse Adipose tissue


title: f2#93 versus pool Mouse Adipose tissue


title: f2#89 versus pool Mouse Adipose tissue


title: f2#95 versus pool Mouse Adipose tissue


title: f2#88 versus pool Mouse Adipose tissue


title: f2#85 versus pool Mouse Adipose tissue


title: f2#86 versus pool Mouse Adipose tissue


title: f2#84 versus pool Mouse Adipose tissue