title: SWIVB3B

description:
Simple annotation: bradyzoite, development
Image: http://smd.stanford.edu/MicroArray/gifs/2001-07/17871.gif

source_name: SWIV B3

tag: SWIV B3


title: Mariana's arrays: Tachyzoite vs reference (blue sample)

status: Public on Aug 13 2005

type: RNA

city: Stanford

last: Stanford Microarray Database

state: CA

address: 300 Pasteur Drive

department: Stanford University, School of Medicine

country: USA

institute: Stanford Microarray Database (SMD)

description:
Simple annotation: bradyzoite, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-12/23587.gif

data_processing: VALUE is Log (base 2) of the ratio of the mean of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

molecule: total RNA

organism: Toxoplasma gondii

source_name: T3T7 reference

tag: T3T7 reference

source_name: Tachyzoite RNA 5ug total

tag: Tachyzoite RNA 5ug total


title: Mariana's arrays: Tachyzoite vs reference (green sample)

description:
Simple annotation: bradyzoite, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-12/23585.gif


title: Mariana's wt-7 brady (black ink) vs. T3/T7 ref.

description:
Simple annotation: Toxoplasma, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/17081.gif

source_name: Parasites

tag: Parasites


title: Mariana's arrays: Tachyzoite (Mutant) vs reference (green sample)

description:
Simple annotation: bradyzoite, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-12/23586.gif

source_name: Tachyzoite (mutant) RNA 5ug total

tag: Tachyzoite (mutant) RNA 5ug total


title: Mariana's mutant B7 brady (black ink) vs. T3/T7 ref.

description:
Simple annotation: Toxoplasma, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/17083.gif


title: peroxide_58uM_t20B

status: Public on Aug 16 2005

description:
Simple annotation: Chemical effects, H2O2
Image: http://smd.stanford.edu/MicroArray/gifs/2001-11/22370.gif

data_processing: VALUE is Log (base 2) of the ratio of the median of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

organism: Bacillus subtilis

source_name: experimental sample

tag: experimental sample


title: Mariana's arrays: Tachyzoite (mutant) vs reference (blue sample)

description:
Simple annotation: bradyzoite, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-12/23588.gif


title: SWIVB3A

description:
Simple annotation: bradyzoite, development
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16533.gif

source_name: T3-T7 Ref (5/7/01) prep + MC ESTs

tag: T3-T7 Ref (5/7/01) prep + MC ESTs

source_name: B3 RNA

tag: B3 RNA


title: SWIIIB4A

description:
Simple annotation: bradyzoite, development
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15730.gif

source_name: Ref

tag: Ref

source_name: SWIII RNA B4

tag: SWIII RNA B4


title: Mariana's wt-7 4 day in-vitro switch brady (red ink) vs. T3/T7 ref.

description:
Simple annotation: Toxoplasma, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/17168.gif


title: N3433 (wt) vs N3433 (rne deletion) pBAD-RNE w/out Arabinose in LB at 30 degrees Trial A

description:
Simple annotation: RNA decay, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13838.gif

organism: Escherichia coli

source_name: N3433 (wt) in LB at 30 degrees C

tag: N3433 (wt) in LB at 30 degrees C

source_name: N3433 (rne deletion) pBAD-RNE w/out Arabinose in LB at 30 degrees C


title: Mutant (emutFsort 4 clone 18) day 3 switch vs. T3/T7 reference

description:
Simple annotation: Toxoplasma, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16551.gif


title: N3433 (wt) vs N3433 (rng deletion) in LB at 30 degrees C Trial B

description:
Simple annotation: RNA decay, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13840.gif


title: Wild type (clone 4) day 3 brady vs reference (rna 1/9/01)

description:
Simple annotation: Toxoplasma, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16937.gif

source_name: T3/T7 PCR product

tag: T3/T7 PCR product

source_name: Clone 4 day 3 brady

tag: Clone 4 day 3 brady


title: N3433 (wt)  vs N3433 (rng deletion) LB at 30 C Trial A *

description:
Simple annotation: RNA decay, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15343.gif

source_name: N3433 (wt) pPM30 in LB at 30 degrees C

tag: N3433 (wt) pPM30 in LB at 30 degrees C

source_name: N3433 (rng deletion) LB at 30 C

tag: N3433 (rng deletion) LB at 30 C


title: Wild type (clone 4) day 3 brady (RNA 1/26/01) vs reference

description:
Simple annotation: Toxoplasma, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16936.gif

source_name: Wild type (clone 4) day 3 brady

tag: Wild type (clone 4) day 3 brady


title: Wild type (clone 4) day 3 in vitro brady (rna 1/11/01) vs reference

description:
Simple annotation: Toxoplasma, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16938.gif


title: N3433 (wt) vs N3433 (wt) pRNG3 in LB at 30 degrees Trial B *

description:
Simple annotation: RNA decay, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15338.gif

source_name: N3433 (wt) pRNG3 in LB at 30 degrees

tag: N3433 (wt) pRNG3 in LB at 30 degrees


title: aft2 minus cells with control plasmid vs aft2 minus cells with AFT2 mutant vector

description:
Simple annotation: Metals, Transcription Factors
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12471.gif

organism: Saccharomyces cerevisiae

source_name: aft2 minus cells with control plasmid

tag: aft2 minus cells with control plasmid


title: N3433 (wt) vs N3433 (rne deletion) pRNG3 at 30 degrees C Trial A *

description:
Simple annotation: RNA decay, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15339.gif


title: Mutant (4sort4-6) day 3 brady (rna 1/26/01) vs reference

description:
Simple annotation: Toxoplasma, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16927.gif

source_name: Mutant (4sort4-clone 6) day 3 in vitro brady


title: aft2 minus cells with control plasmid vs aft2 minus cells with AFT2 vector

description:
Simple annotation: Metals, Transcription Factors
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12169.gif

source_name: aft2 minus cells with AFT2 vector

tag: aft2 minus cells with AFT2 vector


title: N3433 (wt) vs N3433 (rne deletion) pNRNE5 at 30 degrees C Trial A *

description:
Simple annotation: RNA decay, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15341.gif


title: N3433 (wt) vs N3433 (wt) pRNG3 in LB at 30 degrees Trial A *

description:
Simple annotation: RNA decay, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15337.gif


title: N3433 (wt) vs N3433 (rne deletion) pNRNE5 at 30 degrees C Trial B *

description:
Simple annotation: RNA decay, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15342.gif


title: N3433 (wt) vs N3433 (rne deletion) pBADRNE in LB at 30 degrees C Trial B *

description:
Simple annotation: RNA decay, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15336.gif


title: Mutant (4emut-18) day 3 brady (RNA 1/26/01) vs reference

description:
Simple annotation: Toxoplasma, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16930.gif

source_name: Mutant (4emut-clone 18) day 3 brady

tag: Mutant (4emut-clone 18) day 3 brady


title: Day 3 in-vitro switch; compare wt (clone 4) to mut (clone 43)

description:
Simple annotation: Toxoplasma, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9385.gif

source_name: wild type (clone 4)

tag: wild type (clone 4)

source_name: mutant (clone 43)

tag: mutant (clone 43)


title: Day 3 in-vitro switch; compare wt (clone 4) to mut (clone 28)

description:
Simple annotation: Toxoplasma, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9383.gif

source_name: mutant (clone 28)

tag: mutant (clone 28)


title: N3433 (wt) vs N3433 (rne deletion) pRNG3 at 30 degrees C Trial B *

description:
Simple annotation: RNA decay, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15340.gif


title: 3 day in-vitro switch; wild type (clone 4) vs mutant (clone 43)

description:
Simple annotation: Toxoplasma, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9026.gif


title: 3 day in-vitro Brady RNA; compare wild type (clone 4) vs mutant (clone 28)

description:
Simple annotation: Toxoplasma, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9025.gif


title: ICDDR,B O1 Inaba C-2

status: Public on Aug 11 2005

description:
Simple annotation: Pathogen, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24054.gif

organism: Vibrio cholerae

source_name: 2.0 ug Nadia exponential cDNA

tag: 2.0 ug Nadia exponential cDNA

source_name: 2.0 ug O1 Inaba cDNA

tag: 2.0 ug O1 Inaba cDNA


title: Mutant (4 sort4-clone6) day 3 brady (rna 1/11/01) vs reference

description:
Simple annotation: Toxoplasma, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16928.gif

source_name: Mutant (4sort4-clone 6) day 3 invitro brady


title: ICDDR,B O1 Inaba A-3

description:
Simple annotation: Pathogen, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24213.gif

source_name: 1.0 ug Nadia exponential cDNA

tag: 1.0 ug Nadia exponential cDNA

source_name: 1.0 ug O1 Inaba cDNA

tag: 1.0 ug O1 Inaba cDNA


title: Stationary-2

description:
Simple annotation: Pathogen, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24060.gif

source_name: 2.0 ug O1 Inaba stationary cDNA

tag: 2.0 ug O1 Inaba stationary cDNA


title: ICDDR,B O1 Inaba A-2

description:
Simple annotation: Pathogen, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24048.gif

source_name: 1.5 ug Nadia exponential cDNA

tag: 1.5 ug Nadia exponential cDNA

source_name: 1.5 ug O1 Inaba cDNA

tag: 1.5 ug O1 Inaba cDNA


title: "mutant sorted touch cell (red, channel 2) vs. wt sorted touch cell (green, channel 1)"

description: Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/17040.gif

organism: Caenorhabditis elegans

source_name: wt sorted touch cell (green)

tag: wt sorted touch cell (green)

source_name: mutant sorted touch cell (red)

tag: mutant sorted touch cell (red)


title: ICDDR,B O1 Inaba B-3

description:
Simple annotation: Pathogen, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24203.gif


title: ICDDR,B O1 Inaba C-1

description:
Simple annotation: Pathogen, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24053.gif


title: Stationary-4

description:
Simple annotation: Pathogen, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24212.gif


title: ICDDR,B O1 Inaba A-1

description:
Simple annotation: Pathogen, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24047.gif


title: ICDDR,B O1 Inaba B-1

description:
Simple annotation: Pathogen, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24049.gif


title: ICDDR,B O1 Inaba A-4

description:
Simple annotation: Pathogen, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24202.gif


title: ICDDR,B O1 Inaba C-4

description:
Simple annotation: Pathogen, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24206.gif


title: Stationary-3

description:
Simple annotation: Pathogen, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24211.gif


title: ICDDR,B O1 Inaba B-4

description:
Simple annotation: Pathogen, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24204.gif


title: Stationary-1

description:
Simple annotation: Pathogen, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24059.gif


title: "mutant sorted touch cell (red, channel 2) vs. wt sorted touch cell (repeat #4) (green, channel 1)"

description: Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/17048.gif


title: "mutant sorted touch cell (red, channel 2) vs. wt sorted touch cell (repeat #3) (green, channel 1)"

description: Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/17046.gif


title: ICDDR,B O1 Inaba B-2

description:
Simple annotation: Pathogen, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24050.gif


title: "mutant sorted touch cell (red, channel 2) vs. wt sorted touch cell (repeat #1) (green, channel 1)"

description: Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/17041.gif


title: VCXB21-chitobiose vs. VCXB21pDel-chitobiose  Exp.1 #1

description:
Simple annotation: Mutant vs Wild-type, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/23852.gif

source_name: VCXB21: M9 + 0.5% lactate + 0.6 mM chitobiose

value: M9 + 0.5% lactate + 0.6 mM chitobiose

source_name: VCXB21pDel: M9 + 0.5% lacate + 0.6 mM chitobiose

value: M9 + 0.5% lacate + 0.6 mM chitobiose


title: VCXB21-chitobiose vs. VCXB21pDel-chitobiose  Exp.2 #1

description:
Simple annotation: Mutant vs Wild-type, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/27359.gif

source_name: VCXB21pDel: M9 + 0.5% lactate + 0.6 mM chitobiose


title: crab-24h  Exp.4 #2

description:
Simple annotation: Environmental conditions, Miscellaneous
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37455.gif

source_name: planktonic bacteria

tag: planktonic bacteria

source_name: crab attached bacteria

tag: crab attached bacteria


title: crab-24h  Exp.4 #1

description:
Simple annotation: Environmental conditions, Miscellaneous
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37454.gif


title: crab-24h  Exp.2 #2

description:
Simple annotation: Environmental conditions, Miscellaneous
Image: http://smd.stanford.edu/MicroArray/gifs/2003-09/20697.gif


title: VCXB21-chitobiose vs. VCXB21pDel-chitobiose  Exp.2 #2

description:
Simple annotation: Mutant vs Wild-type, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/27358.gif


title: crab-24h  Exp.2 #1

description:
Simple annotation: Environmental conditions, Miscellaneous
Image: http://smd.stanford.edu/MicroArray/gifs/2003-09/20693.gif


title: crab-24h  Exp.1 #2

description:
Simple annotation: Environmental conditions, Miscellaneous
Image: http://smd.stanford.edu/MicroArray/gifs/2003-09/20691.gif


title: ICDDR,B O1 Inaba C-3

description:
Simple annotation: Pathogen, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24205.gif


title: crab-24h  Exp.3 #1

description:
Simple annotation: Environmental conditions, Miscellaneous
Image: http://smd.stanford.edu/MicroArray/gifs/2003-09/31051.gif

source_name: Planktoninc bacteria

tag: Planktoninc bacteria

source_name: Crab attached bacteria

tag: Crab attached bacteria


title: crab-24h  Exp.1 #1

description:
Simple annotation: Environmental conditions, Miscellaneous
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/37770.gif


title: chitotriose-30m  Exp.2 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24222.gif

source_name: M9 + 0.5% lactate

tag: M9 + 0.5% lactate

source_name: M9 + 0.5% lactate + 0.6mM chitotriose

tag: M9 + 0.5% lactate + 0.6mM chitotriose


title: chitotriose-30m  Exp.2 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/24223.gif


title: crab-24h  Exp.3 #2

description:
Simple annotation: Environmental conditions, Miscellaneous
Image: http://smd.stanford.edu/MicroArray/gifs/2003-09/31055.gif


title: chitopentaose-30m Exp.2 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36742.gif

source_name: M9 + 0.5% lactate + 0.6 mM chitopentaose


title: crab-24h  Exp.5 #2

description:
Simple annotation: Environmental conditions, Miscellaneous
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37457.gif


title: chitopentaose-30m  Exp.2 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36741.gif

tag: M9 + 0.5% lactate + 0.6 mM chitopentaose


title: chitotetraose-30m  Exp.2 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/25870.gif

source_name: M9 + 0.5% lactate + 0.6mM chitotetraose

tag: M9 + 0.5% lactate + 0.6mM chitotetraose


title: crab-24h  Exp.5 #1

description:
Simple annotation: Environmental conditions, Miscellaneous
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37765.gif

source_name: Planktonic bacteria

tag: Planktonic bacteria


title: chitobiose-60m  Exp.3 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36721.gif

source_name: M9 + 0.5% lactate + 0.6 mM chitobiose

tag: M9 + 0.5% lactate + 0.6 mM chitobiose


title: chitobiose-60m  Exp.3 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36722.gif


title: chitopentaose-30m  Exp.1 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37598.gif


title: GlcNAc-60m  Exp.2 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35941.gif

source_name: M9 + 0.5% lactate + 0.6 mM GlcNAc

tag: M9 + 0.5% lactate + 0.6 mM GlcNAc


title: chitotetraose-30m  Exp.1 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/20046.gif

source_name: M9 + lactate

tag: M9 + lactate

source_name: M9 + lactate + 0.6 mM chitotetraose

tag: M9 + lactate + 0.6 mM chitotetraose


title: VCXB21-chitobiose vs. VCXB21pDel-chitobiose  Exp.1 #2

description:
Simple annotation: Mutant vs Wild-type, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-09/23841.gif


title: chitopentaose-30m  Exp.1 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37599.gif


title: chitohexaose-60m  Exp.2 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36777.gif

source_name: M9 + 0.5% lactate + 0.6 mM chitohexaose

tag: M9 + 0.5% lactate + 0.6 mM chitohexaose


title: chitosan dimer-30m  Exp.1 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36779.gif

source_name: M9 + 0.5% lactate + 0.6 mM chitosan dimer


title: chitohexaose-30m  Exp.2 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36776.gif


title: chitosan dimer-30m  Exp.1 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36778.gif

tag: M9 + 0.5% lactate + 0.6 mM chitosan dimer


title: chitobiose-30m  Exp.2 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35795.gif


title: chitohexaose-60m  Exp.2 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36775.gif


title: chitohexaose-30m  Exp.2 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36774.gif


title: "wt sorted touch cell (red, channel 2) vs. mutant sorted touch cell (green, channel 1)"

description: Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/17045.gif

source_name: mutant sorted touch cell (green)

tag: mutant sorted touch cell (green)

source_name: wt sorted touch cell (red)

tag: wt sorted touch cell (red)


title: chitotetraose-60m  Exp.2 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37663.gif

source_name: M9 + 0.5% lactate + 0.6 mM chitotetraose


title: "mutant sorted touch cell (red, channel 2) vs. wt sorted touch cell (repeat #2) (green, channel 1)"

description: Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/17042.gif

source_name: wt sorted touch cell (green)

tag: wt sorted touch cell (green)

source_name: mutant sorted touch cell (red)

tag: mutant sorted touch cell (red)


title: GlcNAc-30m  Exp.2 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35939.gif


title: chitotetraose-60m  Exp.2 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36739.gif

tag: M9 + 0.5% lactate + 0.6 mM chitotetraose


title: GlcNAc-30m  Exp.2 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35938.gif


title: GlcNAc-60m  Exp.1 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35937.gif


title: GlcNAc-60m  Exp.1 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35935.gif


title: chitotriose-60m  Exp.2 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36737.gif

source_name: M9 + 0.5% lactate + 0.6 mM chitotriose

tag: M9 + 0.5% lactate + 0.6 mM chitotriose


title: GlcNAc-30m  Exp.1 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35936.gif

source_name: M9 + 0.5% lactate

tag: M9 + 0.5% lactate


title: GlcNAc 30m  Exp.1 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35934.gif


title: chitotriose-60m  Exp.2 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/36738.gif


title: chitobiose-60m  Exp.1 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36718.gif


title: chitotriose-30m  Exp.1 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/36734.gif


title: chitotriose-60m  Exp.1 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36736.gif


title: chitosan dimer-60m  Exp.2 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37463.gif

source_name: M9 + 0.5 % lactate

tag: M9 + 0.5 % lactate

source_name: M9 + 0.5 % lactate + 0.6 mM chitosan dimer


title: chitotriose-60m  Exp.1 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36735.gif


title: chitobiose-30m  Exp.1 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36717.gif


title: chitotriose-30m  Exp.1 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/24217.gif


title: chitotetraose-60m  Exp.1 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/20057.gif


title: chitosan dimer-30m  Exp.2 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37462.gif

tag: M9 + 0.5 % lactate + 0.6 mM chitosan dimer


title: chitobiose-30m  Exp.1 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36716.gif


title: chitopentaose-60m Exp.3 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/28085.gif

source_name: M9 + 0.5% lactate + 0.6 mM chitopentaose


title: chitopentaose-60m  Exp.3 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/28086.gif

tag: M9 + 0.5% lactate + 0.6 mM chitopentaose


title: chitohexaose-60m  Exp.1 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/20665.gif

source_name: M9 + 0.5% lacate

tag: M9 + 0.5% lacate

source_name: M9 + 0.5% lactate + 0.6mM chitohexaose

tag: M9 + 0.5% lactate + 0.6mM chitohexaose


title: IGR J130C clr3 H3K14Ac

type: genomic

city: Stockholm

first: Karl

last: Ekwall

address: Alfred Nobels Alle 7

country: Sweden

institute: Karolinska Inst

description: A set of five highly specific antibodies for H3K9Ac, H3K14Ac, H4K5Ac, H4K12Ac and H4K16Ac developed and titrated for ChIP (Suka et al., 2001) were used for ChIP of chromatin extracts from wt, hos2, clr6-1, clr3 and sir2 cells. The mutant alleles were first backcrossed with the standard laboratory strain (972 h-) to ensure isogenic strain backgrounds . Cell cultures were then grown to mid logarithmic growth phase (5 x106 cells/ml) in rich medium before fixation and ChIP. The resulting ChIP DNA was labeled with Cy5. The wt control ChIP DNA was labeled with Cy3 and simultaneously hybridized with the Cy5 labeled DNA to the IGR+ORF microarrays to produce genome wide mutant versus wt histone acetylation maps.

molecule: genomic DNA

organism: Schizosaccharomyces pombe

source_name: CHIP IP clr3-1 H3K14Ac

tag: clr3-1 sample where H3K14Ac antybody was used

source_name: CHIP INPUT clr3-1 Wt

tag: Wt sample of clr3-1


title: chitotetraose-30m  Exp.1 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/20055.gif

source_name: M9 + lactate

tag: M9 + lactate

source_name: M9 + lactate + 0.6 mM chitotetraose

tag: M9 + lactate + 0.6 mM chitotetraose


title: chitobiose-30m  Exp.2 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36783.gif

source_name: M9 + 0.5% lactate + 0.6 mM chitobiose

tag: M9 + 0.5% lactate + 0.6 mM chitobiose


title: chitotetraose-60m  Exp.1 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36782.gif


title: chitohexaose-60m  Exp.1 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/20664.gif


title: chitopentaose-60m  Exp.1 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37603.gif


title: IGR J130C clr3 H3K9Ac

tag: clr3-D sample where K3K9Ac antybody was used

source_name: CHIP IP clr3-D wt

tag: Wt sample of clr3-D


title: J130c H4K16Ac clr3

source_name: CHIP IP clr3-D H4K16Ac

tag: clr3-D sample where H4K16Ac antybody was used


title: chitosan dimer-60m  Exp.3 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36781.gif

source_name: M9 + 0.5% lactate + 0.6 mM chitosan dimer


title: IGR J130C clr3 H4K5Ac

source_name: CHIP IP clr3-D H4K5Ac

tag: clr3-D sample where H4K5Ac antybody was used


title: IGR J130C hos2 H4K5Ac

source_name: CHIP IP hos2 H4K5Ac

tag: hos2-D sample where H4K5Ac antybody was used

source_name: CHIP INPUT hos2 Wt

tag: Wt sample of hos2-D


title: IGR J130C clr6 H3K14Ac

source_name: CHIP IP clr6-1 H3K14Ac

tag: clr6-1 sample where H3K14Ac antybody was used

source_name: CHIP IP clr6-1 Wt

tag: Wt sample of clr6-1


title: IGR J130c clr3 H4K12Ac

source_name: CHIP IP clr3-D H4K12Ac

tag: clr3-D sample where H4K12Ac antybody was used

source_name: CHIP IP clr3-D Wt


title: chitosan dimer-30m  Exp.2 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37458.gif

source_name: M9 + 0.5 % lactate

tag: M9 + 0.5 % lactate

source_name: M9 + 0.5 % lactate + 0.6 mM chitosan dimer


title: chitohexaose-30m  Exp.1 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/20661.gif

source_name: M9 + 0.5% lacate

tag: M9 + 0.5% lacate

source_name: M9 + 0.5% lactate + 0.6mM chitohexaose


title: chitohexaose-30m  Exp.1 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/20663.gif

tag: M9 + 0.5% lactate + 0.6mM chitohexaose


title: GlcNAc-60m  Exp.2 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35940.gif

source_name: M9 + 0.5% lactate

tag: M9 + 0.5% lactate

source_name: M9 + 0.5% lactate + 0.6 mM GlcNAc

tag: M9 + 0.5% lactate + 0.6 mM GlcNAc


title: chitotetraose-30m  Exp.2 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/25869.gif

source_name: M9 + 0.5% lactate + 0.6mM chitotetraose

tag: M9 + 0.5% lactate + 0.6mM chitotetraose


title: D2 4-1 (daf-2 expt.4 t.p.1) (red, channel 2) vs. D16 4-1 (daf-16 expt.4 t.p.1) (green, channel 1)

status: Public on Aug 10 2005

description: Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11551.gif


title: D2 3-1 (daf-2 expt.3 t.p.1) (red, channel 2) vs. D16 3-1 (daf-16 expt.3 t.p.1) (green, channel 1)

description: Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11429.gif


title: chitopentaose-60m  Exp.1 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37600.gif

source_name: M9 + 0.5% lactate + 0.6 mM chitopentaose


title: D2 2-1 (daf-2 expt2 t.p.1) (red, channel 2) vs. D16 2-1 (daf-16 expt2 t.p.1) (green, channel 1)

description: Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11353.gif

source_name: D16 1-2 (daf-16 timepoint 2) (green)

tag: D16 1-2 (daf-16 timepoint 2) (green)

source_name: D2 1-2 (daf-2 timepoint 2) (red)

tag: D2 1-2 (daf-2 timepoint 2) (red)


title: D2 1-1 (daf-2 timepoint 1) (red, channel 2) vs. D16 1-1 (daf-16 timepoint 1) (green, channel 1)

description: Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11352.gif

source_name: D16 1-1 (daf-16 timepoint 1) (green)

tag: D16 1-1 (daf-16 timepoint 1) (green)

source_name: D2 1-1 (daf-2 timepoint 1) (red)

tag: D2 1-1 (daf-2 timepoint 1) (red)


title: HSF1 +/+ Mouse Fibroblasts Heat Shock 0 hours #2 Scanner7

status: Public on Aug 05 2005

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37438.gif

organism: Mus musculus

source_name: Pooled mRNA from heat shocked (1 hr) and non-heat-shocked mouse fibroblasts

source_name: HSF1 +/+ Mouse Fibroblasts Heat Shock 0 hours #2 mRNA


title: chitobiose-60m  Exp.1 #2

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36719.gif

source_name: M9 + 0.5% lactate + 0.6 mM chitobiose

tag: M9 + 0.5% lactate + 0.6 mM chitobiose


title: HSF1 +/+ Mouse Fibroblasts Heat Shock 0.5 hours Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37436.gif

tag: Pooled mRNA from heat shocked (1 hr) and non-heat-shocked mouse fibroblasts

source_name: HSF1 +/+ Mouse Fibroblasts Heat Shock 0.5 hours mRNA


title: D39 T6.75 hr Time Course 1

status: Public on Aug 03 2005

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29275.gif

organism: Streptococcus pneumoniae


title: HSF1 -/- Mouse Fibroblasts Heat Shock 0 hours #1 Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37428.gif

source_name: HSF1 -/- Mouse Fibroblasts Heat Shock 0 hours #1 mRNA


title: HSF1 +/+ Mouse Fibroblasts Heat Shock 0 hours #3 Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37437.gif

source_name: HSF1 +/+ Mouse Fibroblasts Heat Shock 0 hours #3 mRNA


title: HSF1 -/- Mouse Fibroblasts Heat Shock 0 hours #2 Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37427.gif

source_name: HSF1 -/- Mouse Fibroblasts Heat Shock 0 hours #2 mRNA


title: HSF1 +/+ Mouse Fibroblasts Heat Shock 8 hours Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37429.gif

source_name: HSF1 +/+ Mouse Fibroblasts Heat Shock 8 hours mRNA


title: LuxS Time 0 B Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30192.gif

source_name: 500ng LuxS T0 B

tag: 500ng LuxS T0 B


title: D39 T5.25hr Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29273.gif


title: HSF1 -/- Mouse Fibroblasts Heat Shock 8 hours Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37419.gif

source_name: HSF1 -/- Mouse Fibroblasts Heat Shock 8 hours mRNA


title: LuxS Time 0 A Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30191.gif

source_name: 500ng D39 GC2 T0 A

tag: 500ng D39 GC2 T0 A

source_name: 500ng LuxS GC2 T0 A

tag: 500ng LuxS GC2 T0 A


title: chitosan dimer-60m  Exp.2 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37459.gif

source_name: M9 + 0.5 % lactate

source_name: M9 + 0.5 % lactate + 0.6 mM chitosan dimer


title: HSF1 +/+ Mouse Fibroblasts Heat Shock 2 hours Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37433.gif

source_name: HSF1 +/+ Mouse Fibroblasts Heat Shock 2 hours mRNA


title: D39  T 2.5hr Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29271.gif


title: HSF1 -/- Mouse Fibroblasts Heat Shock 0 hours #3 Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37426.gif

source_name: HSF1 -/- Mouse Fibroblasts Heat Shock 0 hours #3 mRNA


title: D39 Time 0 C Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29270.gif


title: HSF1 -/- Mouse Fibroblasts Heat Shock 6 hours Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37420.gif

source_name: HSF1 -/- Mouse Fibroblasts Heat Shock 6 hours mRNA


title: HSF1 +/+ Mouse Fibroblasts Heat Shock 1 hours Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37434.gif

source_name: Pooled mRNA from heat shocked (1 hr) and non-heat-shocked mouse fibroblasts

source_name: HSF1 +/+ Mouse Fibroblasts Heat Shock 1 hours mRNA


title: HSF1 -/- Mouse Fibroblasts Heat Shock 0.5 hours Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37425.gif

source_name: HSF1 -/- Mouse Fibroblasts Heat Shock 0.5 hours mRNA


title: HSF1 +/+ Mouse Fibroblasts Heat Shock 6 hours Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37430.gif

source_name: HSF1 +/+ Mouse Fibroblasts Heat Shock 6 hours mRNA


title: HSF1 +/+ Mouse Fibroblasts Heat Shock 4 hours Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37431.gif

source_name: HSF1 +/+ Mouse Fibroblasts Heat Shock 4 hours mRNA


title: HSF1 -/- Mouse Fibroblasts Heat Shock 2 hours Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37423.gif

source_name: HSF1 -/- Mouse Fibroblasts Heat Shock 2 hours mRNA


title: LuxS Time 0 C Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30193.gif

source_name: 500ng LuxS T0 C

tag: 500ng LuxS T0 C


title: D39 T6.0 hr Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29274.gif


title: D39 T3 hr Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30118.gif


title: HSF1 -/- Mouse Fibroblasts Heat Shock 1 hours Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37424.gif

source_name: HSF1 -/- Mouse Fibroblasts Heat Shock 1 hours mRNA


title: D39 T1.75 hr Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30116.gif


title: HSF1 +/+ Mouse Fibroblasts Heat Shock 3 hours Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37432.gif

source_name: HSF1 +/+ Mouse Fibroblasts Heat Shock 3 hours mRNA


title: chitosan dimer-60m  Exp.1 #1

description:
Simple annotation: Carbon sources, minimal medium
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36780.gif

source_name: M9 + 0.5% lactate

source_name: M9 + 0.5% lactate + 0.6 mM chitosan dimer


title: HSF1 -/- Mouse Fibroblasts Heat Shock 3 hours Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37422.gif

source_name: HSF1 -/- Mouse Fibroblasts Heat Shock 3 hours mRNA


title: D39 Time 0 B Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30113.gif


title: D39 T2.25 hr Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30117.gif


title: D39 T5.25 hr Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30122.gif


title: D39 T6 hr Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30123.gif


title: D39 T4.5 hr Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30121.gif


title: LuxS T6 hr Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30199.gif

source_name: 500ng LuxS T6

tag: 500ng LuxS T6


title: LuxS T4.25 hr Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29394.gif

source_name: 500ng LuxS T4.25

tag: 500ng LuxS T4.25


title: LuxS T5.75 hr Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29396.gif

source_name: 500ng LuxS T5.75

tag: 500ng LuxS T5.75


title: LuxS  T3 hr Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30196.gif

source_name: 500ng LuxS T3

tag: 500ng LuxS T3


title: LuxS T8 hr Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29398.gif

source_name: 500ng LuxS T8

tag: 500ng LuxS T8


title: D39 Time 0 B Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29387.gif


title: LuxS T6.5 hr Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29397.gif

source_name: 500ng LuxS T6.5

tag: 500ng LuxS T6.5


title: LuxS T6.75 hr Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30200.gif

source_name: 500ng LuxS T6.75

tag: 500ng LuxS T6.75


title: LuxS T3.75 hr Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29393.gif

source_name: 500ng LuxS T3.75

tag: 500ng LuxS T3.75


title: LuxS T5.2 hr Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29395.gif

source_name: 500ng LuxS T5.2

tag: 500ng LuxS T5.2


title: D39 T0.75 hr Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30115.gif


title: LuxS Time 0 C Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29390.gif


title: D39 T7.25 hr Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30124.gif


title: LuxS Time 0 B Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29389.gif

source_name: 500ng LuxS T0 B


title: LuxS T3.75 hr Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30197.gif


title: LuxS T4.5 hr Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30198.gif

source_name: 500ng LuxS T4.5

tag: 500ng LuxS T4.5


title: LuxS T3 hr Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29392.gif


title: LuxS T2.5 hr Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29391.gif

source_name: 500ng LuxS T2.5

tag: 500ng LuxS T2.5


title: D39 T8.25 hr Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29277.gif


title: HSF1 +/+ Mouse Fibroblasts Heat Shock 0 hours #1 Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37435.gif

source_name: Pooled mRNA from heat shocked (1 hr) and non-heat-shocked mouse fibroblasts

source_name: HSF1 +/+ Mouse Fibroblasts Heat Shock 0 hours #1 mRNA


title: HSF1 -/- Mouse Fibroblasts Heat Shock 4 hours Scanner7

description:
Simple annotation: Stress, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37421.gif

source_name: HSF1 -/- Mouse Fibroblasts Heat Shock 4 hours mRNA


title: 2nd2h100umAFB_s

status: Public on Jul 31 2005

city: Palo Alto

first: Yingying

last: Guo

institute: Roche Palo Alto

description:
S. cerevisiae strain YHE2 (MATa/MATα, ade2-40/ade2-119, trp5-12/trp5-27, ilv1-92/ilv1-92, ura3 delta5/ura3 delta5) has been engineered to express human CYP1A2.  Yeast transformants were cultured in minimal synthetic media lacking uracil (2% glucose, 0.67% yeast nitrogen base without amino acids and 0.077% complete supplement mixture minus uracil (Qbiogene, Carlsbad, CA). Uracil-deficient media was inoculated with overnight cultures of transformed strains, and grown to an optical density of ~0.5 at 600nm at 30 Celsius degree. At this point, each culture was split and treated with AFB1 (Sigma, St. Louis, MI) dissolved in Dimethyl Sulfoxide (DMSO) (Sigma, St. Louis, MI) at various final concentrations, whereas the control culture was treated with 4% DMSO. All cultures were further shaken at 250 rpm at 30 Celsius degree, and 10 ml samples were taken at different time points for RNA isolation.  Specifically, from 0, 10, 25, 50 and 100 micromolar AFB1 cultures at 120 min, or cultures treated with 0 and 50 micromolar AFB1 at 15, 30, 60, 90, 120 min for RNA extraction.
Cells were collected by centrifugation at 3000 g for 4 min at room temperature, then washed once in RNase-free H2O, and stored at –80 Celsius degree until RNA isolation. Total RNA was isolated by using a hot acid-phenol method, i.e., yeast cells were incubated with acid phenol (pH 4.3) at 65 Celsius degree for 1 h and then reextracted by phenol another three times, followed by washing with chloroform and precipitating with ethanol. RNA integrity was confirmed on an Agilent 2100 Bioanalyzer (Agilent Technologies, Waldbronn, Germany). RNA concentration was determined spectrophotometrically.
The manufacturing and hybridization of S. cerevisiae cDNA microarrays containing ~ 6,200 open reading frame (ORFs) were conducted as described previously (Fazzio, Kooperberg et al. 2001). cDNA probes were prepared using a standard amino-allyl labeling protocol (http://cmgm.stanford.edu/pbrown/protocols/aadUTPCouplingProcedure.htm). Following DNase I treatment (Roche Diagnostics, Indianapolis, IN), 30 microgram each of the treated and time-match control total RNAs, were coupled to either Cy5 or Cy3 fluorophore. Fluorescence intensities of each spot and its surrounding background were extracted at both 532 nm and 635 nm using GenePix Pro 3.0 software (Axon Instruments, Union City, CA). Two or three biological replicates were performed for each experimental condition. For each array hybridization experiment, RNAs from the treated sample and its corresponding time-matched control were co-hybridized to arrays and respectively quantified in different channels.  A dye swap strategy was used to eliminate the dye bias.
Reference:

Fazzio, T. G., C. Kooperberg, et al. (2001). "Widespread collaboration of Isw2 and Sin3-Rpd3 chromatin remodeling complexes in transcriptional repression." Mol Cell Biol 21(19): 6450-60.

source_name: 4% DMSO-treated, 2 hours, Cy5

source_name: 100 um AFB-treated, 2 hours, Cy3


title: 90min50umAFB_s

source_name: 4% DMSO-treated, 90min, Cy5

source_name: 50 uM AFB-treated, 90 min, Cy3


title: D39 T7.5 hr Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29276.gif


title: LuxS  T1.5 hr Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30194.gif

source_name: 500ng LuxS T1.5

tag: 500ng LuxS T1.5


title: 2nd2h50umAFB_s

source_name: 50 uM AFB-treated, 2 hours, Cy3


title: D39 Time 0 A Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30111.gif


title: 1st2h100umAFB

source_name: 100 umAFB-treated, 2 hours, Cy5

source_name: 4% DMSO-treated, 2 hours, Cy3


title: 1st2h25umAFB

source_name: 25um AFB-treated, 2 hours, Cy5


title: LuxS T2.25 hr Time Course 2

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/30195.gif

source_name: 500ng LuxS T2.25

tag: 500ng LuxS T2.25


title: 60min50umAFB

source_name: 50 um AFB-treated, 60 min, Cy5

source_name: 4% DMSO-treated, 60 min, Cy3


title: 90min50umAFB

source_name: 50 um AFB-treated, 90 min, Cy5

source_name: 4% DMSO-treated, 90 min, Cy3


title: 30min50umAFB_s

source_name: 4% DMSO-treated, 30min, Cy5

source_name: 50 uM AFB-treated, 30 min, Cy3


title: 2nd2h25umAFB_s

source_name: 25 um AFB-treated, 2 hours, Cy3


title: 2nd2h10umAFB_s

source_name: 4% DMSO-treated, 2 hours, Cy5

source_name: 10 uM AFB-treated, 2 hours, Cy3


title: 3rd2h100umAFB

source_name: Repeat of 100um AFB-treated, 2 hours, Cy5


title: 15min50umAFB

source_name: 50 um AFB-treated, 15 min, Cy5

source_name: 4% DMSO-treated, 15 min, Cy3


title: 3rd2h50umAFB

source_name: Repeat of 50um AFB-treated, 2 hours, Cy5


title: 1st2h10umAFB

description:
S. cerevisiae strain YHE2 (MATa/MATα, ade2-40/ade2-119, trp5-12/trp5-27, ilv1-92/ilv1-92, ura3 delta5/ura3 delta5) has been engineered to express human CYP1A2.  Yeast transformants were cultured in minimal synthetic media lacking uracil (2% glucose, 0.67% yeast nitrogen base without amino acids and 0.077% complete supplement mixture minus uracil (Qbiogene, Carlsbad, CA). Uracil-deficient media was inoculated with overnight cultures of transformed strains, and grown to an optical density of ~0.5 at 600nm at 30 Celsius degree. At this point, each culture was split and treated with AFB1 (Sigma, St. Louis, MI) dissolved in Dimethyl Sulfoxide (DMSO) (Sigma, St. Louis, MI) at various final concentrations, whereas the control culture was treated with 4% DMSO. All cultures were further shaken at 250 rpm at 30 Celsius degree, and 10 ml samples were taken at different time points for RNA isolation.  Specifically, from 0, 10, 25, 50 and 100 micromolar AFB1 cultures at 120 min, or cultures treated with 0 and 50 micromolar AFB1 at 15, 30, 60, 90, 120 min for RNA extraction.
Cells were collected by centrifugation at 3000 g for 4 min at room temperature, then washed once in RNase-free H2O, and stored at –80 Celsius degree until RNA isolation. Total RNA was isolated by using a hot acid-phenol method, i.e., yeast cells were incubated with acid phenol (pH 4.3) at 65 Celsius degree for 1 h and then reextracted by phenol another three times, followed by washing with chloroform and precipitating with ethanol. RNA integrity was confirmed on an Agilent 2100 Bioanalyzer (Agilent Technologies, Waldbronn, Germany). RNA concentration was determined spectrophotometrically.

The manufacturing and hybridization of S. cerevisiae cDNA microarrays containing ~ 6,200 open reading frame (ORFs) were conducted as described previously (Fazzio, Kooperberg et al. 2001). cDNA probes were prepared using a standard amino-allyl labeling protocol (http://cmgm.stanford.edu/pbrown/protocols/aadUTPCouplingProcedure.htm). Following DNase I treatment (Roche Diagnostics, Indianapolis, IN), 30 microgram each of the treated and time-match control total RNAs, were coupled to either Cy5 or Cy3 fluorophore. Fluorescence intensities of each spot and its surrounding background were extracted at both 532 nm and 635 nm using GenePix Pro 3.0 software (Axon Instruments, Union City, CA). Two or three biological replicates were performed for each experimental condition. For each array hybridization experiment, RNAs from the treated sample and its corresponding time-matched control were co-hybridized to arrays and respectively quantified in different channels.  A dye swap strategy was used to eliminate the dye bias.
Reference:

Fazzio, T. G., C. Kooperberg, et al. (2001). "Widespread collaboration of Isw2 and Sin3-Rpd3 chromatin remodeling complexes in transcriptional repression." Mol Cell Biol 21(19): 6450-60.

source_name: 10um AFB-treated, 2 hours, Cy5


title: 15min50umAFB_s

source_name: 4% DMSO-treated, 15 min, Cy5

source_name: 50 uM AFB-treated, 15 min, Cy3


title: D39 Time 0 A Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29268.gif


title: 30min50umAFB

source_name: 50 um AFB-treated, 30 min, Cy5

source_name: 4% DMSO-treated, 30 min, Cy3


title: 1st2h50umAFB

source_name: 50um AFB-treated, 2 hours, Cy5

source_name: 4% DMSO-treated, 2 hours, Cy3


title: 60min50umAFB_s

source_name: 4% DMSO-treated, 60min, Cy5

source_name: 50 uM AFB-treated, 60 min, Cy3


title: LuxS Time 0  A Time Course 1

description:
Simple annotation: Mutant vs Wild-type, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29388.gif

source_name: 500ng LuxS T0 A

tag: 500ng LuxS T0 A


title: Jan2003_0

status: Public on Jul 28 2005

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37276.gif

organism: Chlamydomonas reinhardtii

source_name: 0h + sulfur

tag: 0h + sulfur


title: Jan2003_4

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37269.gif

source_name: 4 - sulfur

tag: 4 - sulfur


title: zmda120n_1

status: Public on Jul 30 2005

description:
Simple annotation: Cell-line, Drug treatment
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/28193.gif

organism: Homo sapiens

source_name: stratagene reference lot#1000207

tag: stratagene reference lot#1000207


title: Jan2003_9

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37274.gif

source_name: 9 - sulfur

tag: 9 - sulfur


title: Jan2003_3

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37268.gif

source_name: 3 - sulfur

tag: 3 - sulfur


title: Jan2003_2r

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37267.gif

source_name: 2 - sulfur

tag: 2 - sulfur


title: z_181n

description:
Simple annotation: Cell-line, Drug treatment
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/32560.gif

source_name: Stratagene reference lot#1000207

tag: Stratagene reference lot#1000207


title: Jan2003_1r

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37266.gif

source_name: 1 - sulfur

tag: 1 - sulfur


title: Jan2003_0R

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37356.gif


title: z_HT29n

description:
Simple annotation: Cell-line, Drug treatment
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/32767.gif


title: TN12.2vs12.8B

status: Public on Jul 29 2005

description:
Simple annotation: Mutant vs Wild-type, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26746.gif


title: zmcf7p

description:
Simple annotation: Cell-line, Drug treatment
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/28256.gif


title: zmcf7a

description:
Simple annotation: Cell-line, Drug treatment
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/28257.gif


title: Jan2003_10

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37275.gif

source_name: 10 - sulfur

tag: 10 - sulfur


title: z_HT29d

description:
Simple annotation: Cell-line, Drug treatment
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/32766.gif


title: Jan2003_7

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37272.gif

source_name: 7 - sulfur

tag: 7 - sulfur


title: z_181p

description:
Simple annotation: Cell-line, Drug treatment
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/32558.gif


title: z_HT29p

description:
Simple annotation: Cell-line, Drug treatment
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/32768.gif


title: Jan2003_6r

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37271.gif

source_name: 6 - sulfur

tag: 6 - sulfur


title: Jan2003_8

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37273.gif

source_name: 8 - sulfur

tag: 8 - sulfur


title: TN12.2vs12.8A

description:
Simple annotation: Mutant vs Wild-type, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26749.gif


title: CN04vs48

description:
Simple annotation: Mutant vs Wild-type, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2002-02/25020.gif


title: z_257d

description:
Simple annotation: Cell-line, Drug treatment
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32350.gif


title: CC425_S12

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/31786.gif

source_name: 24h - sulfur

tag: 24h - sulfur


title: z_257n

description:
Simple annotation: Cell-line, Drug treatment
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32352.gif


title: TN12.2vs12.8

description:
Simple annotation: Mutant vs Wild-type, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2002-02/25022.gif


title: z_181d

description:
Simple annotation: Cell-line, Drug treatment
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/32559.gif


title: CC425_S11

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/31785.gif


title: CC425_S9

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/31783.gif

source_name: 8h - sulfur

tag: 8h - sulfur


title: CC425_S13

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/31787.gif

source_name: 12h - sulfur

tag: 12h - sulfur


title: CC425_S10

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/31784.gif


title: CC425_S15

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/31788.gif


title: CC425_S8

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/31782.gif

source_name: 4h - sulfur

tag: 4h - sulfur


title: RS04vsCN48A

description:
Simple annotation: Mutant vs Wild-type, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26744.gif


title: RS04vsCN48B

description:
Simple annotation: Mutant vs Wild-type, cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26745.gif


title: z_257p

description:
Simple annotation: Cell-line, Drug treatment
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32351.gif


title: NRRL2338 R5 12/2/02 16 h

status: Public on Jul 26 2005

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/36339.gif

organism: Streptomyces coelicolor


title: NRRL2338 R5 12/2/02 vs KOVP R5 11/24/02 12 h control

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/36378.gif


title: Jan2003_5

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37207.gif

source_name: 5 - sulfur

tag: 5 - sulfur


title: CC425_S35

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/31790.gif

source_name: 2h - sulfur

tag: 2h - sulfur

source_name: 0h + sulfur

tag: 0h + sulfur


title: NRRL2338 R5 12/2/02 70 h

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/36358.gif


title: NRRL2338 R5 12/2/02 24 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36580.gif


title: NRRL2338 R5 12/2/02 36 h

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/36341.gif


title: S. ery KOVP R5 11/24/02 30 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36507.gif


title: S. ery KOVP R5 11/24/02 110 h

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/36302.gif


title: zmda120p_1

description:
Simple annotation: Cell-line, Drug treatment
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/28192.gif

source_name: stratagene reference lot#1000207

tag: stratagene reference lot#1000207


title: S. ery KOVP R5 11/24/02 24 h

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/36249.gif


title: S. ery KOVP R5 11/24/02 20 h

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/36248.gif


title: NRRL2338 R5 12/2/02 48 h

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/36342.gif


title: S. ery KOVP R5 11/24/02 70 h

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/36253.gif


title: NRRL2338 R5 12/2/02 20 h

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/36340.gif


title: S. ery KOVP R5 11/24/02 36 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36508.gif


title: M145 VS M600 UV 60sec colony 1

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37439.gif

source_name: M600 uv 60sec colony 1

tag: M600 uv 60sec colony 1


title: CC425_S7

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/31781.gif


title: NRRL2338 R5 12/2/02 gDNA control

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36671.gif

source_name: NRRL2338 gDNA

tag: NRRL2338 gDNA


title: M145 gDNA vs. 548 gDNA

description:
Simple annotation: Genomic DNA, Genomic mismatch scanning
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37129.gif

source_name: M145 gDNA

tag: M145 gDNA

source_name: 548 gDNA

tag: 548 gDNA


title: NRRL2338 R5 12/2/02 115 h

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36582.gif


title: S. ery KOVP R5 11/24/02 48 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36670.gif


title: M145 gDNA vs. 505 gDNA

description:
Simple annotation: Genomic DNA, Genomic mismatch scanning
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37128.gif

source_name: 505 gDNA

tag: 505 gDNA


title: 1149 vs M145 gDNA

description:
Simple annotation: Genomic DNA, Genomic mismatch scanning
Image: http://smd.stanford.edu/MicroArray/gifs/2002-11/35270.gif

source_name: strain 1149

tag: strain 1149


title: M145 gDNA vs. 250 gDNA

description:
Simple annotation: Genomic DNA, Genomic mismatch scanning
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37125.gif

source_name: 250 gDNA

tag: 250 gDNA


title: M145 gDNA vs. 13 gDNA

description:
Simple annotation: Genomic DNA, Genomic mismatch scanning
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37124.gif

source_name: 13 gDNA

tag: 13 gDNA


title: K24-1/EGFP R5 6/7/03 36 h

description:
Simple annotation: Transcription, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/42156.gif


title: M145 vs M600 UV 20#2 second trial

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/39350.gif


title: K24-1/EGFP R5 6/7/03 20 h

description:
Simple annotation: Transcription, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/42155.gif


title: M145 gDNA vs. 380 gDNA

description:
Simple annotation: Genomic DNA, Genomic mismatch scanning
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37127.gif

source_name: 380 gDNA

tag: 380 gDNA


title: K24-1/EGFP R5 6/7/03 16 h

description:
Simple annotation: Transcription, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/42154.gif


title: M145 gDNA vs. 290 gDNA

description:
Simple annotation: Genomic DNA, Genomic mismatch scanning
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37126.gif

source_name: 290 gDNA

tag: 290 gDNA


title: K24-1/EGFP R5 6/7/03 72 h

description:
Simple annotation: Transcription, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/42158.gif


title: K24-1/EGFP R5 6/7/03 gDNA:12 h Control

description:
Simple annotation: Transcription, Control experiment
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/42248.gif

source_name: K24-1/EGFP gDNA

tag: K24-1/EGFP gDNA


title: K24-1/EGFP R5 6/7/03 48 h

description:
Simple annotation: Transcription, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/42157.gif


title: M145 vs M600 UV 60 colony 6

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38248.gif

source_name: M600 UV 60 colony 6

tag: M600 UV 60 colony 6


title: M145 vs M600 UV30sec colony4

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37644.gif


title: M145 vs M600 UV 20#3 second trial

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/39351.gif


title: M145 vs M600 UV 60 colony 5

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38247.gif

source_name: M600 UV 60 colony 5

tag: M600 UV 60 colony 5


title: strain 210 (R) vs M145 (G)

description:
Simple annotation: Genomic DNA, DNA
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/36014.gif

source_name: strain 210 gDNA

tag: strain 210 gDNA


title: M145 vs M600 UV 60sec colony3

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37645.gif


title: M145 gDNA vs. 11 gDNA

description:
Simple annotation: Genomic DNA, Genomic mismatch scanning
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37123.gif

source_name: 11 gDNA

tag: 11 gDNA


title: M145 gDNA vs. W3443 gDNA (4)

description:
Simple annotation: Genomic DNA, Genomic mismatch scanning
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/32611.gif

source_name: W3443 gDNA

tag: W3443 gDNA


title: NRRL2338 R5 12/2/02 30 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36515.gif


title: M145 vs M600 UV 20#4 second trial

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/39352.gif


title: CC425_S32

description:
Simple annotation: Nutrient effects, Sulfur
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/31789.gif

source_name: 4h - sulfur

tag: 4h - sulfur

source_name: 0h + sulfur

tag: 0h + sulfur


title: M145 vs M600 UV 20#5 second trial

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/39353.gif


title: M145 vs M600 UV 60 colony 4

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38246.gif

source_name: M600 UV 60 colony 4

tag: M600 UV 60 colony 4


title: M145 VS M600 UV 30sec colony 3

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37442.gif

source_name: M600 uv 30sec colony 3

tag: M600 uv 30sec colony 3


title: ATCC19609 12 h vs. RUS 12 h  R5NG 2/9/03 (2)

description:
Simple annotation: Strain comparison, Control experiment
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43928.gif


title: 417 vs M145 gDNA

description:
Simple annotation: Genomic DNA, Genomic mismatch scanning
Image: http://smd.stanford.edu/MicroArray/gifs/2002-11/35268.gif

source_name: M145 gDNA

tag: M145 gDNA

source_name: strain 417

tag: strain 417


title: ATCC19609 gDNA vs 12 h RNA R5NG 2/9/03 (2)

description:
Simple annotation: Strain comparison, Control experiment
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43927.gif

source_name: ATCC19609 gDNA

tag: ATCC19609 gDNA


title: ATCC19609 R5NG 2/9/03 48 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43933.gif


title: 12 vs M145 gDNA

description:
Simple annotation: Genomic DNA, Genomic mismatch scanning
Image: http://smd.stanford.edu/MicroArray/gifs/2002-11/35266.gif

source_name: strain 12

tag: strain 12


title: M145 VS M600 UV 30sec colony 1

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37440.gif

source_name: M600 uv 30sec colony 1

tag: M600 uv 30sec colony 1


title: RUS R5NG 2/9/03 70 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43942.gif


title: ATCC19609 R5NG 2/9/03 24 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43930.gif


title: M132 vs M145 gDNA

description:
Simple annotation: Genomic DNA, Genomic mismatch scanning
Image: http://smd.stanford.edu/MicroArray/gifs/2002-11/35267.gif

source_name: strain M132

tag: strain M132


title: M600 UV0 colony 6 (second trial)

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/39004.gif

source_name: M600 UV0 colony 6

tag: M600 UV0 colony 6


title: RUS R5NG 2/9/03 48 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43941.gif


title: 6 vs M145 gDNA

description:
Simple annotation: Genomic DNA, Genomic mismatch scanning
Image: http://smd.stanford.edu/MicroArray/gifs/2002-11/35265.gif

source_name: strain 6

tag: strain 6


title: ATCC19609 R5NG 2/9/03 36 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43932.gif


title: M145 gDNA vs. J1501 gDNA (3)

description:
Simple annotation: Genomic DNA, Genomic mismatch scanning
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/32608.gif

source_name: J1501 gDNA

tag: J1501 gDNA


title: ATCC19609 R5NG 2/9/03 30 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43931.gif


title: M145 gDNA vs. 1147 gDNA

description:
Simple annotation: Genomic DNA, Genomic mismatch scanning
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/37130.gif

source_name: 1147 gDNA

tag: 1147 gDNA


title: RUS R5NG 2/9/03 30 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43940.gif


title: ATCC19609 R5NG 2/9/03 115 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43936.gif


title: M600 UV0 colony 5 (second trial)

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/39003.gif

source_name: M600 UV0 colony 5

tag: M600 UV0 colony 5


title: M600 UV0 colony 8 (second trial)

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/39005.gif

source_name: M600 UV0 colony 8

tag: M600 UV0 colony 8


title: M145 v. 11-26 (40h) gDNA #2

description:
Simple annotation: Genomic DNA, DNA
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32358.gif


title: M145 v. M600 gDNA #2

description:
Simple annotation: Genomic DNA, DNA
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32354.gif

source_name: M600 gDNA

tag: M600 gDNA


title: ATCC19609 R5NG 2/9/03 95 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43935.gif


title: S. ery KOVP R5 11/24/02 16 h

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/36247.gif


title: RUS R5NG 2/9/03 95 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43943.gif


title: RUS R5NG 2/9/03 36 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43939.gif


title: RNA M145OD 1 R5 vs RNA M600 OD1 R5 (2)

description:
Simple annotation: Stress, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33513.gif

source_name: RNA M145OD 1 R5

tag: RNA M145OD 1 R5

source_name: RNA M600 OD1 R5

tag: RNA M600 OD1 R5


title: RUS R5NG 2/9/03 16 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43937.gif


title: M145 vs M600 UV 40#4 second trial

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/39347.gif


title: ATCC19609 R5NG 2/9/03 16 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43929.gif


title: 1148#3 vs M145

description:
Simple annotation: Genome comparison, Genomic mismatch scanning
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/42420.gif


title: K24-1/EGFP R5 6/7/03 24 h

description:
Simple annotation: Transcription, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/42247.gif


title: RUS R5NG 2/9/03 24 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43938.gif


title: M145 VS M600 UV60sec  colony 2

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37761.gif


title: rpb1_50min_dT_rep

status: Public on Jul 23 2005

type: mixed

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs//10058.gif

source_name: genomic DNA sonicated 200ng +  spike V

tag: genomic DNA sonicated 200ng +  spike V

source_name: rpb1-1 50min, 15ug, spikeV

tag: rpb1-1 50min, 15ug, spikeV


title: rpb1_30min_dT_rep

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10053.gif

source_name: rpb1-1 30min, 15ug, spikeV

tag: rpb1-1 30min, 15ug, spikeV


title: M145 vs M600 UV 20#1 second trial

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/39349.gif


title: M145 v. A3(2) gDNA #2

description:
Simple annotation: Genomic DNA, DNA
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32356.gif

source_name: M145 gDNA

tag: M145 gDNA

source_name: A3(2) gDNA

tag: A3(2) gDNA


title: rpb1_5min_dT_rep

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10044.gif

source_name: rpb1-1 5min, 15ug, spikeV

tag: rpb1-1 5min, 15ug, spikeV


title: MCF7-UCLA X MCF7+1um Tamoxifen 48hrs

description:
Simple annotation: Drug_treatment, Breast
Image: http://boussard-smd.stanford.edu:8000/MicroArray/gifs/2000-07/7823.gif

source_name: MCF7-UCLA control

tag: MCF7-UCLA control

source_name: MCF7+1um Tamoxifen 48hrs

tag: MCF7+1um Tamoxifen 48hrs


title: rpb1_60min_dT_rep

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs//10059.gif

source_name: rpb1-1 60min, 15ug, spikeV

tag: rpb1-1 60min, 15ug, spikeV


title: ATCC19609 R5NG 2/9/03 70 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43934.gif


title: M145 vs M600 UV 20#6 second trial

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/39345.gif


title: rpb1_5min_dT_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12029.gif

source_name: genomic DNA dpnII 200ng + 5 ul spike V RT

source_name: rpb1_5min_dT_3rd 5 ul spike V

tag: rpb1_5min_dT_3rd 5 ul spike V


title: rpb1_20min_dT_rep

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs//10051.gif

source_name: rpb1-1 20min, 15ug, spikeV

tag: rpb1-1 20min, 15ug, spikeV


title: rpb1_0min_dT_rep

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs//10042.gif

source_name: rpb1-1 0minb, 15ug, spikeV

tag: rpb1-1 0minb, 15ug, spikeV


title: RUS R5NG 2/9/03 115 h (2)

description:
Simple annotation: Strain comparison, RNA
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43945.gif


title: rpb1_10min_dT_rep

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs//10048.gif

source_name: rpb1-1 10min, 15ug, spikeV

tag: rpb1-1 10min, 15ug, spikeV


title: rpb1_15min_dT_rep

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10049.gif

source_name: rpb1-1 15min, 15ug, spikeV

tag: rpb1-1 15min, 15ug, spikeV


title: rpb1_50min_dT_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12037.gif

tag: genomic DNA dpnII 200ng + 5 ul spike V RT

source_name: rpb1_50min_dT_3rd 5 ul spike V

tag: rpb1_50min_dT_3rd 5 ul spike V


title: rpb1_40min_dT_rep

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10054.gif

source_name: rpb1-1 40min, 15ug, spikeV

tag: rpb1-1 40min, 15ug, spikeV


title: rpb1_30min_random_rep

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11285.gif

source_name: rpb1_30min_random_rep 5 ul spike V

tag: rpb1_30min_random_rep 5 ul spike V


title: M145 VS M600 UV 30sec colony 2

description:
Simple annotation: Genome comparison, UV radiation
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37441.gif

source_name: M600 uv 30sec colony 2

tag: M600 uv 30sec colony 2


title: rpb1_50min_random_rep

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11294.gif

source_name: rpb1_50min_random_rep 5 ul spike V

tag: rpb1_50min_random_rep 5 ul spike V


title: rpb1_0mina_random_rep

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11279.gif

source_name: rpb1_0mina_random_rep,  5 ul spike V

tag: rpb1_0mina_random_rep,  5 ul spike V


title: rpb1_0minb_random_rep

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11296.gif

source_name: rpb1_0minb_random_rep 5 ul spike V

tag: rpb1_0minb_random_rep 5 ul spike V


title: rpb1_20min_random_rep

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11283.gif

source_name: rpb1_20min_random_rep 5 ul spike V

tag: rpb1_20min_random_rep 5 ul spike V


title: rpb1_40min_dT_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12036.gif

source_name: rpb1_40min_dT_3rd 5 ul spike V

tag: rpb1_40min_dT_3rd 5 ul spike V


title: rpb1_0minb_dT_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12027.gif

source_name: rpb1_0minb_dT_3rd 5 ul spike V

tag: rpb1_0minb_dT_3rd 5 ul spike V


title: 3-M145-LR7

description:
Simple annotation: Development, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/20651.gif


title: rpb1_30min_dT_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12035.gif

source_name: rpb1_30min_dT_3rd 5 ul spike V

tag: rpb1_30min_dT_3rd 5 ul spike V


title: rpb1_40min_random_rep

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11291.gif

source_name: genomic DNA dpnII 200ng + 5 ul spike V RT

source_name: rpb1_40min_random_rep 5 ul spike V

tag: rpb1_40min_random_rep 5 ul spike V


title: rpb1_20min_dT_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12033.gif

source_name: rpb1_20min_dT_3rd 5 ul spike V

tag: rpb1_20min_dT_3rd 5 ul spike V


title: rpb1_0mina_dT_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12025.gif

source_name: rpb1_0mina_dT_3rd,  5 ul spike V

tag: rpb1_0mina_dT_3rd,  5 ul spike V


title: rpb1_10min_dT_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12031.gif

source_name: rpb1_10min_dT_3rd 5 ul spike V

tag: rpb1_10min_dT_3rd 5 ul spike V


title: 3-M145-LR5

description:
Simple annotation: Development, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/20508.gif


title: rpb1_15min_dT_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12032.gif

source_name: rpb1_15min_dT_3rd  5 ul spike V

tag: rpb1_15min_dT_3rd  5 ul spike V


title: 3-M145-LR6

description:
Simple annotation: Development, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/20509.gif


title: rpb1_15min_random_rep

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11282.gif

tag: genomic DNA dpnII 200ng + 5 ul spike V RT

source_name: rpb1_15min_random_rep 5 ul spike V

tag: rpb1_15min_random_rep 5 ul spike V


title: 3-M145-LR2

description:
Simple annotation: Development, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/20504.gif


title: rpb1_5min_random_rep

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11280.gif

source_name: rpb1_5min_random_rep 5 ul spike V

tag: rpb1_5min_random_rep 5 ul spike V


title: 3-M145-LR3

description:
Simple annotation: Development, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/20505.gif


title: 3-M145-LR4

description:
Simple annotation: Development, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/20506.gif


title: 3-M145-LR8

description:
Simple annotation: Development, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/20511.gif


title: rpb1_0minb_random_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12019.gif

source_name: rpb1_0minb_random_3rd 5 ul spike V

tag: rpb1_0minb_random_3rd 5 ul spike V


title: rpb1_5min_random_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12052.gif

source_name: rpb1_5min_random_3rd 5 ul spike V

tag: rpb1_5min_random_3rd 5 ul spike V


title: rpb1_0mina_random_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12018.gif

source_name: rpb1_0mina_random_3rd,  5 ul spike V

tag: rpb1_0mina_random_3rd,  5 ul spike V


title: rpb1_15min_random_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12011.gif


title: rpb1_60min_random_rep

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11310.gif

source_name: genomic DNA

tag: genomic DNA


title: rpb1_30min_random_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12014.gif

source_name: rpb1_10min_random_3rd 5 ul spike V

tag: rpb1_10min_random_3rd 5 ul spike V


title: rpb1_40min_random_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12015.gif

source_name: rpb1_15min_random_3rd 5 ul spike V

tag: rpb1_15min_random_3rd 5 ul spike V


title: rpb1_60min_dT_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-04/4979.gif

source_name: genomic DNA dpnII 500ng + 5 ul spike IV

tag: genomic DNA dpnII 500ng + 5 ul spike IV

source_name: rpb1 RNA, ts 60min, 15 ug, + 5 ul spike IV


title: rpb1_50min_dT_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-04/4978.gif

source_name: rpb1 RNA, ts 50min, 15 ug, + 5 ul spike IV


title: 3-M145-LR1

description:
Simple annotation: Development, development
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/20500.gif


title: rpb1_50min_random_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12016.gif

source_name: genomic DNA dpnII 200ng + 5 ul spike V RT

source_name: rpb1_20min_random_3rd 5 ul spike V

tag: rpb1_20min_random_3rd 5 ul spike V


title: rpb1_20min_random_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12012.gif


title: rpb1_10min_random_rep

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11281.gif

source_name: rpb1_10min_random_rep 5 ul spike V

tag: rpb1_10min_random_rep 5 ul spike V


title: rpb1_0min_dT_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-04/4968.gif

source_name: rpb1 RNA ts 1min, 15 ug, + 5 ul spike IV


title: rpb1_10min_random_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12021.gif


title: rpb1_60min_random_3rd

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12017.gif

source_name: rpb1_30min_random_3rd 5 ul spike V

tag: rpb1_30min_random_3rd 5 ul spike V


title: 3-M145-LR9

description:
Simple annotation: Development, Differentiation
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/20512.gif


title: rpb1_15min_dT_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-04/4974.gif

source_name: rpb1 RNA, ts 14min, 15 ug, + 5 ul spike IV


title: rpb1_20min_dT_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-04/4975.gif

source_name: rpb1 RNA, ts 20min, 15 ug, + 5 ul spike IV


title: rpb1_40min_dT_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-04/4977.gif

source_name: rpb1 RNA, ts 40min, 15 ug, + 5 ul spike IV


title: rpb1_5min_dT_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-04/4972.gif

source_name: rpb1 RNA ts 4min, 15 ug, + 5 ul spike IV


title: rpb1_10min_dT_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-04/4973.gif

source_name: rpb1 RNA, ts 9min, 15 ug, + 5 ul spike IV


title: rpb1_30min_dT_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-04/4976.gif

source_name: rpb1 RNA, ts 30 min, 15 ug, + 5 ul spike IV


title: rpb1_0mina_random_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/6396.gif

source_name: rpb1 RNA ts 0min, 15 ug, + 5 ul spike IV


title: rpb1_20min_random_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/6401.gif

source_name: rpb1 RNA, ts 19min, 15 ug, + 5 ul spike IV


title: rpb1_40min_random_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs//6403.gif

source_name: rpb1 RNA ts 39min, 15 ug, + 5 ul spike IV


title: rpb1_0minc_random_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/6406.gif

source_name: genomic DNA

source_name: rpb1-1 0min radom priming

tag: rpb1-1 0min radom priming


title: rpb1_50min_random_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs//6404.gif

source_name: genomic DNA dpnII 500ng + 5 ul spike IV

source_name: rpb1 RNA, ts 49min, 15 ug, + 5 ul spike IV


title: rpb1_60min_random_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs//6405.gif

source_name: rpb1 RNA, ts 59min, 15 ug, + 5 ul spike IV


title: rpb1_30min_random_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/6402.gif

source_name: rpb1 RNA ts 29min, 15 ug, + 5 ul spike IV


title: rpb1_15min_random_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/6400.gif

source_name: rpb1 RNA, ts 13min, 15 ug, + 5 ul spike IV


title: rpb1_5min_random_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/6398.gif

source_name: rpb1 RNA, ts 3min, 15 ug, + 5 ul spike IV


title: trr - 0.1 mM H2O2 - 10 min

status: Public on Jul 22 2005

description:
Simple annotation: Stress, H2O2
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6679.gif

source_name: time = 0 min

tag: time = 0 min

source_name: time =10 min

tag: time =10 min


title: wt - 0.3 mM H2O2 - 30 min

description:
Simple annotation: Stress, H2O2
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6676.gif

source_name: time = 30 min

tag: time = 30 min


title: DBY7286 + 0.3 mM H2O2 - 30 min

description:
Simple annotation: Stress, H2O2
Image: http://smd.stanford.edu/MicroArray/gifs/2000-04/4778.gif


title: trr - 0.1 mM H2O2 - 30 min

description:
Simple annotation: Stress, H2O2
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6681.gif


title: DBYtrr1 + 0.3 mM H2O2 - 30 min

description:
Simple annotation: Stress, H2O2
Image: http://smd.stanford.edu/MicroArray/gifs/2000-04/4781.gif


title: trr - 0.3 mM H2O2 - 30 min

description:
Simple annotation: Stress, H2O2
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6688.gif


title: wt - 0.1 mM H2O2 - 10 min

description:
Simple annotation: Stress, H2O2
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6668.gif

source_name: time = 10 min

tag: time = 10 min


title: rpb1_0minb_random_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/6397.gif

tag: rpb1 RNA ts 0min, 15 ug, + 5 ul spike IV


title: DBYtrr1 vs. wild type DBY7286

description:
Simple annotation: Stress, H2O2
Image: http://smd.stanford.edu/MicroArray/gifs/2000-04/4782.gif

source_name: wild type - log phase

tag: wild type - log phase

source_name: trr1 - log phase

tag: trr1 - log phase


title: trr - 0.3 mM H2O2 - 10 min

description:
Simple annotation: Stress, H2O2
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6685.gif


title: wt - 0.3 mM H2O2 - 10 min

description:
Simple annotation: Stress, H2O2
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6672.gif


title: MCF7-UCLA estrogen starved 2days#2 X MCF7+E2 4hrs

description:
Simple annotation: Drug_treatment, Breast
Image: http://boussard-smd.stanford.edu:8000/MicroArray/gifs/2000-08/9476.gif

source_name: MCF7-UCLA estrogen starved 2days

tag: MCF7-UCLA estrogen starved 2days

source_name: MCF7+Estrogen2 for 4hrs

tag: MCF7+Estrogen2 for 4hrs


title: MCF7-UCLA X MCF7+6um Tamoxifen 48hrs #1

description:
Simple annotation: Drug_treatment, Breast
Image: http://boussard-smd.stanford.edu:8000/MicroArray/gifs/2000-08/8996.gif

source_name: MCF7+6um Tamoxifen 48hrs

tag: MCF7+6um Tamoxifen 48hrs


title: rpb1_10min_random_1st

description:
Simple annotation: RNA processing, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/6399.gif

source_name: rpb1 RNA, ts 9min, 15 ug, + 5 ul spike IV


title: DBY7286 + 0.1 mM H2O2 - 30 min

description:
Simple annotation: Stress, H2O2
Image: http://smd.stanford.edu/MicroArray/gifs/2000-04/4779.gif


title: DBYtrr1 + 0.1 mM H2O2 - 30 min

description:
Simple annotation: Stress, H2O2
Image: http://smd.stanford.edu/MicroArray/gifs/2000-04/4780.gif


title: MCF7-UCLA estrogen starved 2days X MCF7+E2 8hrs

description:
Simple annotation: Drug_treatment, Breast
Image: http://boussard-smd.stanford.edu:8000/MicroArray/gifs/2000-11/11792.gif

source_name: MCF7-UCLA estrogen starved 2days#3

tag: MCF7-UCLA estrogen starved 2days#3

source_name: MCF7+E2 8hrs

tag: MCF7+E2 8hrs


title: New N2 mixed stage (red, channel 2) vs.L2 N2  T30.4 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11191.gif

source_name: L2 N2  T30.4 (green, channel 1)

tag: L2 N2  T30.4 (green, channel 1)

source_name: New N2 mixed stage (red, channel 2)

tag: New N2 mixed stage (red, channel 2)


title: New N2 mixed stage (red, channel 2) vs.L2 N2  T0new.3 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11089.gif

source_name: L2 N2  T0new.3 (green, channel 1)

tag: L2 N2  T0new.3 (green, channel 1)


title: MCF7-UCLA estrogen starved 2days X MCF7+E2 24hrs

description:
Simple annotation: Drug_treatment, Breast
Image: http://boussard-smd.stanford.edu:8000/MicroArray/gifs/2000-11/11773.gif

source_name: MCF7+E2 24hrs

tag: MCF7+E2 24hrs


title: New N2 mixed stage (red, channel 2) vs.L2 N2  T2new.2 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11087.gif

source_name: L2 N2  T2new.2 (green, channel 1)

tag: L2 N2  T2new.2 (green, channel 1)


title: New N2 mixed stage (red, channel 2) vs.L2 N2  T1.3 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11083.gif

source_name: L2 N2  T1.3 (green, channel 1)

tag: L2 N2  T1.3 (green, channel 1)


title: New N2 mixed stage (red, channel 2) vs.L2 Ras  T0new.2 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11332.gif

source_name: L2 Ras  T0new.2 (green, channel 1)

tag: L2 Ras  T0new.2 (green, channel 1)


title: New N2 mixed stage (red, channel 2) vs.L2 Ras  T2.1 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11319.gif

source_name: L2 Ras  T2.1 (green, channel 1)

tag: L2 Ras  T2.1 (green, channel 1)

source_name: New N2 mixed stage (red, channel 2) vs.EGGS N2  T0.1 (green, channel 1)


title: mixed stage N2 (red channel 2) vs. SL2-amplified mixed stage N2 (green, channel 1)

description:
Simple annotation: C. elegans, C. elegans
Image: http://smd.stanford.edu/MicroArray/gifs/2000-10/10982.gif

source_name: SL2-amplified mixed stage N2 (green)

tag: SL2-amplified mixed stage N2 (green)

source_name: mixed stage N2 (red channel 2)

tag: mixed stage N2 (red channel 2)


title: New N2 mixed stage (red, channel 2) vs.L2 Ras  T0new.4 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11335.gif

source_name: L2 Ras  T0new.4 (green, channel 1)

tag: L2 Ras  T0new.4 (green, channel 1)


title: New N2 mixed stage (red, channel 2) vs.L2 Ras  T2.2 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11589.gif

source_name: L2 Ras  T2.2 (green, channel 1)

tag: L2 Ras  T2.2 (green, channel 1)


title: New N2 mixed stage (red, channel 2) vs.L2 Ras  T0.2 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11114.gif

source_name: L2 Ras  T0.2 (green, channel 1)

tag: L2 Ras  T0.2 (green, channel 1)


title: New N2 mixed stage (red, channel 2) vs.L2 N2  T1.4(green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11085.gif

source_name: L2 N2  T1.4(green, channel 1)

tag: L2 N2  T1.4(green, channel 1)


title: New N2 mixed stage (red, channel 2) vs.L2 Ras  T0.4 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11119.gif

source_name: L2 Ras  T0.4 (green, channel 1)

tag: L2 Ras  T0.4 (green, channel 1)


title: New N2 mixed stage (red, channel 2) vs.L2 Ras  T30.3 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11117.gif

source_name: L2 Ras  T30.3 (green, channel 1)

tag: L2 Ras  T30.3 (green, channel 1)


title: New N2 mixed stage (red, channel 2) vs.L2 Ras  T2.4bis (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs//11588.gif

source_name: L2 Ras  T2.4bis (green, channel 1)

tag: L2 Ras  T2.4bis (green, channel 1)


title: New N2 mixed stage (red, channel 2) vs.L2 Ras  T0new.3 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11587.gif

source_name: L2 Ras  T0new.3 (green, channel 1)

tag: L2 Ras  T0new.3 (green, channel 1)

source_name: New N2 mixed stage (red, channel 2)


title: New N2 mixed stage (red, channel 2) vs.L2 Ras  T0.3 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11116.gif

source_name: L2 Ras  T0.3 (green, channel 1)

tag: L2 Ras  T0.3 (green, channel 1)

tag: New N2 mixed stage (red, channel 2)


title: New N2 mixed stage (red, channel 2) vs.L2 N2  T1.2 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11078.gif

source_name: L2 N2  T1.2 (green, channel 1)

tag: L2 N2  T1.2 (green, channel 1)


title: New N2 mixed stage (red, channel 2) vs.L2 Ras  T1.3 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11118.gif

source_name: L2 Ras  T1.3 (green, channel 1)

tag: L2 Ras  T1.3 (green, channel 1)


title: New N2 mixed stage (red, channel 2) vs.L2 Ras  T1.2 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11115.gif

source_name: L2 Ras  T1.2 (green, channel 1)

tag: L2 Ras  T1.2 (green, channel 1)


title: New N2 mixed stage (red, channel 2) vs.L2 Ras  T1.1 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs//11113.gif

source_name: L2 Ras  T1.1 (green, channel 1)

tag: L2 Ras  T1.1 (green, channel 1)


title: New N2 mixed stage (red, channel 2) vs.L2 N2  T0.3 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11079.gif

source_name: L2 N2  T0.3 (green, channel 1)

tag: L2 N2  T0.3 (green, channel 1)


title: New N2 mixed stage (red, channel 2) vs.L2 Ras  T30.1 (green, channel 1)

description:
Simple annotation: C. elegans, Heat-shock
Image: http://smd.stanford.edu/MicroArray/gifs//11112.gif

source_name: L2 Ras  T30.1 (green, channel 1)

tag: L2 Ras  T30.1 (green, channel 1)