title: "19 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13420.gif

source_name: "19 hr Hela Double Thymidine, exp3"

tag: "19 hr Hela Double Thymidine, exp3"


title: "17 hr Hela Double Thymidine, exp3"

status: Public on Oct 22 2005

type: RNA

city: Stanford

last: Stanford Microarray Database

state: CA

address: 300 Pasteur Drive

department: Stanford University, School of Medicine

country: USA

institute: Stanford Microarray Database (SMD)

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13419.gif

data_processing: VALUE is Log (base 2) of the ratio of the mean of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

molecule: total RNA

organism: Homo sapiens

source_name: Hela Reference 3 primed with oligo dT

tag: Hela Reference 3 primed with oligo dT

source_name: "17 hr Hela Double Thymidine, exp3"

tag: "17 hr Hela Double Thymidine, exp3"


title: "12 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13134.gif

source_name: "12 hr Hela Double Thymidine, exp3"

tag: "12 hr Hela Double Thymidine, exp3"


title: "10 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13132.gif

source_name: "10 hr Hela Double Thymidine, exp3"

tag: "10 hr Hela Double Thymidine, exp3"


title: 26 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10172.gif

source_name: Asynchronous Hela Cells ref9

tag: Asynchronous Hela Cells ref9

source_name: 26 hr Hela Double Thymidine, exp2

tag: 26 hr Hela Double Thymidine, exp2


title: "13 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13417.gif

source_name: "13 hr Hela Double Thymidine, exp3"

tag: "13 hr Hela Double Thymidine, exp3"


title: 32 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10173.gif

source_name: Asynchronous Hela Cells ref10

tag: Asynchronous Hela Cells ref10

source_name: 32 hr Hela Double Thymidine, exp2

tag: 32 hr Hela Double Thymidine, exp2


title: "2 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13125.gif

source_name: "2 hr Hela Double Thymidine, exp3"

tag: "2 hr Hela Double Thymidine, exp3"


title: "3 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs//13412.gif

source_name: "3 hr Hela Double Thymidine, exp3"

tag: "3 hr Hela Double Thymidine, exp3"


title: "0 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13121.gif

source_name: "0 hr Hela Double Thymidine, exp3"

tag: "0 hr Hela Double Thymidine, exp3"


title: aft1 delete vs aft1up: met

description:
Simple annotation: Martel, Martel
Image: http://smd.stanford.edu/MicroArray/gifs/1999-10/8689.gif

organism: Saccharomyces cerevisiae

source_name: aft1 delete

tag: aft1 delete


title: "7 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13414.gif

source_name: "7 hr Hela Double Thymidine, exp3"

tag: "7 hr Hela Double Thymidine, exp3"


title: "6 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13128.gif

source_name: "6 hr Hela Double Thymidine, exp3"

tag: "6 hr Hela Double Thymidine, exp3"


title: "4 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13127.gif

source_name: "4 hr Hela Double Thymidine, exp3"

tag: "4 hr Hela Double Thymidine, exp3"


title: "32h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14354.gif

source_name: "32h Thy-Noc, Exp4"

tag: "32h Thy-Noc, Exp4"


title: "8 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13129.gif

source_name: Hela Reference 3 primed with oligo dT

tag: Hela Reference 3 primed with oligo dT

source_name: "8 hr Hela Double Thymidine, exp3"

tag: "8 hr Hela Double Thymidine, exp3"


title: 15 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10166.gif

source_name: Asynchronous Hela Cells ref8

tag: Asynchronous Hela Cells ref8

source_name: 15 hr Hela Double Thymidine, exp2

tag: 15 hr Hela Double Thymidine, exp2


title: "5 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13413.gif

source_name: "5 hr Hela Double Thymidine, exp3"

tag: "5 hr Hela Double Thymidine, exp3"


title: "34h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14355.gif

source_name: "34h Thy-Noc, Exp4"

tag: "34h Thy-Noc, Exp4"


title: 40 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10181.gif

source_name: Asynchronous Hela Cells ref2

tag: Asynchronous Hela Cells ref2

source_name: 40 hr Hela Double Thymidine, exp2

tag: 40 hr Hela Double Thymidine, exp2


title: HFFs/tcruzi 6h 03/10/01 #1

status: Public on Oct 20 2005

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14423.gif

source_name: Infected

tag: Infected

source_name: Uninfected

tag: Uninfected


title: "9 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13415.gif

source_name: "9 hr Hela Double Thymidine, exp3"

tag: "9 hr Hela Double Thymidine, exp3"


title: 22 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10171.gif

source_name: 22 hr Hela Double Thymidine, exp2

tag: 22 hr Hela Double Thymidine, exp2


title: "30h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14353.gif

source_name: "30h Thy-Noc, Exp4"

tag: "30h Thy-Noc, Exp4"


title: "28h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14352.gif

source_name: "28h Thy-Noc, Exp4"

tag: "28h Thy-Noc, Exp4"


title: DKO infected vs. DKO conditioned medium 24 hr

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3675.gif

source_name: Infected RNA

tag: Infected RNA

source_name: Conditioned medium RNA

tag: Conditioned medium RNA


title: 0h mitotic selection, test

description:
Simple annotation: Cell-cycle, Mitotic selection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16446.gif

source_name: Hela Reference 3, total RNA amplified by Whitfield's modified protocol

source_name: 0h mitotic selection, test

tag: 0h mitotic selection, test


title: HFFs/tcruzi 6h 03/10/01 #2

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14424.gif


title: HFFs/tcruzi 24h 03/10/01 #2

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14422.gif


title: HFF were infected with wild type T. cruzi for 4 hours. Repeat of hcn 106

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7757.gif


title: Wild Type T. cruzi 3 hr infection

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3636.gif

source_name: infected

tag: infected

source_name: uninfected

tag: uninfected


title: Human RNA spiked with 17% T.cruzi RNA

description:
Simple annotation: control, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14426.gif

source_name: Human RNA spiked with tcruzi

tag: Human RNA spiked with tcruzi

source_name: Unspiked

tag: Unspiked


title: HFF were infected with wild T. cruzi6 hour

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6812.gif


title: Wild type conditioned media (24hr) agst. wild type T. cruzi infected (24hr)

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3664.gif

source_name: Conditioned media RNA

tag: Conditioned media RNA


title: HFFs/tcruzi 24h 03/10/01 #1

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14421.gif


title: HFF RNA spiked with T. cruzi RNA

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7753.gif

source_name: HFF only

tag: HFF only

source_name: HFF + Toxo

tag: HFF + Toxo


title: HFF were infected with wild type T. cruzi for 2 hours. Repeat of hcn 105

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7756.gif

source_name: Infected


title: HFF were infected with wild T. cruzi2 hour

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6810.gif

source_name: Uninfected


title: "15 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13418.gif

source_name: Hela Reference 3 primed with oligo dT

tag: Hela Reference 3 primed with oligo dT

source_name: "15 hr Hela Double Thymidine, exp3"

tag: "15 hr Hela Double Thymidine, exp3"


title: Wild Type T. cruzi 5hr infection

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3635.gif


title: Wild Type T. cruzi 24 hour

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3585.gif

tag: Infected

tag: Uninfected


title: HFF infected with wild type T. cruzi for 24 hours

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3676.gif


title: HFF infected with wild type T. cruzi for 21 hours.  Repeat of hcn056.

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6594.gif


title: T.cruzi Strain Y

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/1999-10/7947.gif

source_name: uninfected 24hr

tag: uninfected 24hr

source_name: infected 24hr

tag: infected 24hr


title: HFF infected with wild type T. cruzi for 24 hours.

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6595.gif


title: HFF_infected_with_wild_type_T._cruzi_strain_Y_24_hours

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/1999-10/7952.gif


title: HFF were infected with wild T. cruzi4 hour

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6811.gif


title: Wild Type T. cruzi 21hr infection

description:
Simple annotation: Infection, T. cruzi
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3624.gif


title: 18 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10167.gif

source_name: Asynchronous Hela Cells ref9

tag: Asynchronous Hela Cells ref9

source_name: 18 hr Hela Double Thymidine, exp2

tag: 18 hr Hela Double Thymidine, exp2


title: "26h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14351.gif

source_name: "26h Thy-Noc, Exp4"

tag: "26h Thy-Noc, Exp4"


title: Lymph Node

status: Public on Oct 18 2005

description:
Simple annotation: Reference verification, Normal tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10003.gif

source_name: CRF

tag: CRF

source_name: Lymph Node

tag: Lymph Node


title: "36h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14356.gif

source_name: "36h Thy-Noc, Exp4"

tag: "36h Thy-Noc, Exp4"


title: "11 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13416.gif

source_name: "11 hr Hela Double Thymidine, exp3"

tag: "11 hr Hela Double Thymidine, exp3"


title: Testis (NL075) Hybe #1

description:
Simple annotation: Reference verification, Normal tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10071.gif

source_name: Testis (NL075) Hybe #1

tag: Testis (NL075) Hybe #1


title: IL122A Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15891.gif

data_processing: VALUE is Log (base 2) of the ratio of the median of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

source_name: Wang amplified (1 round) CRG

tag: Wang amplified (1 round) CRG

source_name: IL122A Type 2: FL to DLBCL Transformation

tag: IL122A Type 2

value: FL to DLBCL Transformation


title: Leukopheresis (Post-ficoll)

description:
Simple annotation: Reference verification, Normal tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10005.gif

source_name: Leukopheresis (Post-ficoll)

tag: Leukopheresis (Post-ficoll)


title: DLCL-0052, GCB-Like Type2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16945.gif

source_name: "DLCL-0052, GCB-Like Type2a"

tag: "DLCL-0052, GCB-Like Type2a"


title: Tonsil (Hu. Ton. 5.29.98)

description:
Simple annotation: Reference verification, Normal tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10004.gif

source_name: Tonsil (Hu. Ton. 5.29.98)

tag: Tonsil (Hu. Ton. 5.29.98)


title: IL119B Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15877.gif

source_name: IL119B Type 2: FL to DLBCL Transformation

tag: IL119B Type 2


title: DLCL-0051, GCB-Like Type2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16943.gif

source_name: "DLCL-0051, GCB-Like Type2a"

tag: "DLCL-0051, GCB-Like Type2a"


title: IL126 Type1: FL to DLBCL Transformation

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15314.gif


title: DLCL-0024, GCB-Like Type2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16940.gif

source_name: "DLCL-0024, GCB-Like Type2a"

tag: "DLCL-0024, GCB-Like Type2a"


title: DLCL-0029, GCB-Like Type2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16942.gif

source_name: "DLCL-0029, GCB-Like Type2a"

tag: "DLCL-0029, GCB-Like Type2a"


title: IL124B Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15901.gif

source_name: IL124B Type 2: FL to DLBCL Transformation

tag: IL124B Type 2


title: IL114B Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15854.gif

source_name: IL114B Type 2: FL to DLBCL Transformation

tag: IL114B Type 2


title: IL117B Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15872.gif

source_name: IL117B Type 2: FL to DLBCL Transformation

tag: IL117B Type 2


title: IL114A Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15851.gif

source_name: IL114A Type 2: FL to DLBCL Transformation

tag: IL114A Type 2


title: IL125B Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15903.gif

source_name: IL125B Type 2: FL to DLBCL Transformation

tag: IL125B Type 2


title: GC 43 Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15906.gif

source_name: GC 43 Type 2: FL to DLBCL Transformation

tag: GC 43 Type 2


title: IL114C Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15857.gif

source_name: IL114C Type 2: FL to DLBCL Transformation

tag: IL114C Type 2


title: 20 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10168.gif

source_name: Asynchronous Hela Cells ref10

tag: Asynchronous Hela Cells ref10

source_name: 20 hr Hela Double Thymidine, exp2

tag: 20 hr Hela Double Thymidine, exp2


title: "23 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13422.gif

source_name: Hela Reference 3 primed with oligo dT

tag: Hela Reference 3 primed with oligo dT

source_name: "23 hr Hela Double Thymidine, exp3"

tag: "23 hr Hela Double Thymidine, exp3"


title: IL126A Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15904.gif

source_name: Wang amplified (1 round) CRG

tag: Wang amplified (1 round) CRG

source_name: IL126A Type 2: FL to DLBCL Transformation

tag: IL126A Type 2


title: IL124A Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15900.gif

source_name: IL124A Type 2: FL to DLBCL Transformation

tag: IL124A Type 2


title: IL125A Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15902.gif

source_name: IL125A Type 2: FL to DLBCL Transformation

tag: IL125A Type 2


title: IL119 Type1: FL to DLBCL Transformation

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15276.gif


title: IL126B Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15905.gif

source_name: IL126B Type 2: FL to DLBCL Transformation

tag: IL126B Type 2


title: IL121 Type1: FL to DLBCL Transformation

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15298.gif


title: IL119A Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15875.gif

source_name: IL119A Type 2: FL to DLBCL Transformation

tag: IL119A Type 2


title: IL125 Type1: FL to DLBCL Transformation

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15309.gif


title: IL122B Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15894.gif

source_name: IL122B Type 2: FL to DLBCL Transformation

tag: IL122B Type 2


title: IL114 Type1: FL to DLBCL Transformation

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15254.gif


title: IL123 Type1: FL to DLBCL Transformation

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15305.gif


title: IL105 Type1: FL to DLBCL Transformation

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15238.gif


title: DLCL-0049, ABC-Like Type2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16954.gif

source_name: "DLCL-0049, ABC-Like Type2a"

tag: "DLCL-0049, ABC-Like Type2a"


title: IL117 Type1: FL to DLBCL Transformation

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15272.gif


title: DLCL-0048, ABC-Like Type2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16947.gif

source_name: "DLCL-0048, ABC-Like Type2a"

tag: "DLCL-0048, ABC-Like Type2a"


title: IL116A Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15862.gif

source_name: IL116A Type 2: FL to DLBCL Transformation

tag: IL116A Type 2


title: DLCL-0027, ABC-Like Type2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16951.gif

source_name: "DLCL-0027, ABC-Like Type2a"

tag: "DLCL-0027, ABC-Like Type2a"


title: IL117A Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15868.gif

source_name: IL117A Type 2: FL to DLBCL Transformation

tag: IL117A Type 2


title: OCI-Ly10 Type2

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15798.gif

source_name: OCI-Ly10 Type2

tag: OCI-Ly10 Type2


title: OCI-Ly3 Type2

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15797.gif

source_name: OCI-Ly3 Type2

tag: OCI-Ly3 Type2


title: DLCL-0039, ABC-Like Type2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16953.gif

source_name: "DLCL-0039, ABC-Like Type2a"

tag: "DLCL-0039, ABC-Like Type2a"


title: DLCL-0037, GCB-Like Type2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16931.gif

source_name: "DLCL-0037, GCB-Like Type2a"

tag: "DLCL-0037, GCB-Like Type2a"


title: DLCL-0023, GCB-Like Type2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16933.gif

source_name: "DLCL-0023, GCB-Like Type2a"

tag: "DLCL-0023, GCB-Like Type2a"


title: IL121B Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15888.gif

source_name: Wang amplified (1 round) CRG

tag: Wang amplified (1 round) CRG

source_name: IL121B Type 2: FL to DLBCL Transformation

tag: IL121B Type 2


title: IL121A Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15884.gif

source_name: IL121A Type 2: FL to DLBCL Transformation

tag: IL121A Type 2


title: IL123B Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15898.gif

source_name: IL123B Type 2: FL to DLBCL Transformation

tag: IL123B Type 2


title: IL116B Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15865.gif

source_name: IL116B Type 2: FL to DLBCL Transformation

tag: IL116B Type 2


title: HeLa x SR21

description:
Simple annotation: RNA coimmunoprecipitation, development
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/8804.gif

source_name: HeLa

tag: HeLa


title: DLCL-0047, ABC-Like Type2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16949.gif

source_name: "DLCL-0047, ABC-Like Type2a"

tag: "DLCL-0047, ABC-Like Type2a"


title: SUDHL6 Type2

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15799.gif

source_name: SUDHL6 Type2

tag: SUDHL6 Type2


title: IL123C Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15899.gif

source_name: IL123C Type 2: FL to DLBCL Transformation

tag: IL123C Type 2


title: IL105B Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15828.gif

source_name: IL105B Type 2: FL to DLBCL Transformation

tag: IL105B Type 2


title: IL124 Type1: FL to DLBCL Transformation

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15247.gif


title: IL122 Type1: FL to DLBCL Transformation

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15301.gif


title: IL120 Type1: FL to DLBCL Transformation

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15288.gif


title: IL124 Type1: FL to DLBCL Transformation; #2

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15261.gif


title: NP0049 prol

description:
Simple annotation: prostate cancer, Aging
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14750.gif

source_name: CFR mRNA

tag: CFR mRNA

source_name: NP0049 prol mRNA

tag: NP0049 prol mRNA


title: NP15E7

description:
Simple annotation: prostate cancer, Aging
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16841.gif

source_name: CRD/CRF mix (about 5:1) common reference

source_name: 15E7 NP cells

tag: 15E7 NP cells


title: Heart (NL051)

description:
Simple annotation: Reference verification, Normal tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9989.gif

source_name: CRF

tag: CRF

source_name: Heart (NL051)

tag: Heart (NL051)


title: SW872 x SR21

description:
Simple annotation: RNA coimmunoprecipitation, development
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9244.gif


title: IL120B Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15882.gif

source_name: IL120B Type 2: FL to DLBCL Transformation

tag: IL120B Type 2


title: IL116 Type1: FL to DLBCL Transformation

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15242.gif


title: NP0049 Sen

description:
Simple annotation: prostate cancer, Aging
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14826.gif

source_name: CRF mRNA

tag: CRF mRNA

source_name: NP0049 fully senescent

tag: NP0049 fully senescent


title: Colo205 x SR21

description:
Simple annotation: RNA coimmunoprecipitation, development
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9234.gif


title: NP0047prol

description:
Simple annotation: prostate cancer, Aging
Image: http://smd.stanford.edu/MicroArray/gifs//11643.gif

source_name: proliferating NP0047 cells

tag: proliferating NP0047 cells


title: IL105A Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15827.gif

source_name: Wang amplified (1 round) CRG

tag: Wang amplified (1 round) CRG

source_name: IL105A Type 2: FL to DLBCL Transformation

tag: IL105A Type 2


title: NP104 prol

description:
Simple annotation: prostate cancer, Aging
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14851.gif

source_name: NP104 proliferating cells

tag: NP104 proliferating cells


title: IL123A Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15896.gif

source_name: IL123A Type 2: FL to DLBCL Transformation

tag: IL123A Type 2


title: Stomach (NL175)

description:
Simple annotation: Reference verification, Normal tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9992.gif

source_name: Stomach (NL175)

tag: Stomach (NL175)


title: NP0047 early senescent

description:
Simple annotation: prostate cancer, Aging
Image: http://smd.stanford.edu/MicroArray/gifs//11651.gif

source_name: NP0047 early senescent

tag: NP0047 early senescent


title: Lung

description:
Simple annotation: Reference verification, Normal tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9990.gif

source_name: Lung

tag: Lung


title: U937 x SR21 #2

description:
Simple annotation: RNA coimmunoprecipitation, development
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/8817.gif


title: NP0047 senescent

description:
Simple annotation: prostate cancer, Aging
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11697.gif

source_name: NP0047 senescent

tag: NP0047 senescent


title: PANC-1 x SR21 #2

description:
Simple annotation: RNA coimmunoprecipitation, development
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/8815.gif


title: Brain, Right Motor Cortex

description:
Simple annotation: Solid tumor, Brain
Image: http://smd.stanford.edu/MicroArray/gifs/2001-11/22185.gif

source_name: Brain, Right Motor Cortex (NL185)

tag: Brain, Right Motor Cortex (NL185)


title: T3 treatment for ind E # 3

description:
Simple annotation: Drug_treatment, Normal tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/8961.gif

source_name: E2 after T3

tag: E2 after T3

source_name: E1 before T3

tag: E1 before T3


title: T3 treatment for ind B # 3

description:
Simple annotation: Drug_treatment, Normal tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10258.gif

source_name: 6 Ug aRNA (B1)

tag: 6 Ug aRNA (B1)

source_name: 6 Ug aRNA (B2)

tag: 6 Ug aRNA (B2)


title: Kidney (NL078)

description:
Simple annotation: Reference verification, Normal tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9991.gif

source_name: CRF

tag: CRF

source_name: Kidney (NL078)

tag: Kidney (NL078)


title: Small Bowel (NL171)

description:
Simple annotation: Reference verification, Normal tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10075.gif

source_name: Small Bowel (NL171)

tag: Small Bowel (NL171)


title: NP0049 early sen.

description:
Simple annotation: prostate cancer, Aging
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14806.gif

source_name: CRF mRNA

tag: CRF mRNA

source_name: NP0049 early senescent

tag: NP0049 early senescent


title: Liver

description:
Simple annotation: Reference verification, Normal tissue
Image: http://smd.stanford.edu/MicroArray/gifs//9999.gif

source_name: Liver

tag: Liver


title: NP104 sen.

description:
Simple annotation: prostate cancer, Aging
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14856.gif

source_name: CRR mRNA

tag: CRR mRNA

source_name: NP104 senescent

tag: NP104 senescent


title: Colon (NL216)

description:
Simple annotation: Reference verification, Normal tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10074.gif

source_name: Colon (NL216)

tag: Colon (NL216)


title: LN07r11b

status: Public on Oct 15 2005

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3576.gif

source_name: ethanol

tag: ethanol


title: Pancreas

description:
Simple annotation: Reference verification, Normal tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10000.gif

source_name: Pancreas

tag: Pancreas


title: T3 treatment for ind H

description:
Simple annotation: Drug_treatment, Normal tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9019.gif

source_name: 6 ug aRNA II before T3 (H1)

tag: 6 ug aRNA II before T3 (H1)

source_name: 6 ug aRNA II after T3 (H2)

tag: 6 ug aRNA II after T3 (H2)


title: NP104 early sen.

description:
Simple annotation: prostate cancer, Aging
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14854.gif

source_name: NP104 early senescence

tag: NP104 early senescence


title: LNnoR1881-46hrs

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-02/2919.gif

source_name: 1 nM R1881 replete

tag: 1 nM R1881 replete

source_name: 46 hrs. R1881 deprived

tag: 46 hrs. R1881 deprived


title: IL120A Type 2a

description:
Simple annotation: Lymphoma Classification, Follicular Lymphoma
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15880.gif

source_name: Wang amplified (1 round) CRG

tag: Wang amplified (1 round) CRG

source_name: IL120A Type 2: FL to DLBCL Transformation

tag: IL120A Type 2


title: LN09r11b

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3589.gif


title: lapc47r11b

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-02/2709.gif


title: Brain, Cerebellum

description:
Simple annotation: Solid tumor, Brain
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9996.gif

source_name: CRF

tag: CRF

source_name: Brain, Cerebellum

tag: Brain, Cerebellum


title: T3 treatment for ind G

description:
Simple annotation: Drug_treatment, Normal tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/8764.gif

source_name: 6 ug aRNA before T3

tag: 6 ug aRNA before T3

source_name: 6 ug aRNA after T3

tag: 6 ug aRNA after T3


title: LNnoR1881-70hrs

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-02/2724.gif

source_name: androgen replete media (1 nM R1881)

tag: androgen replete media (1 nM R1881)

source_name: androgen deprived 70 hrs

tag: androgen deprived 70 hrs


title: T3 treatment for ind I

description:
Simple annotation: Drug_treatment, Normal tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9012.gif

source_name: 6 ug aRNA before T3 (I1)

tag: 6 ug aRNA before T3 (I1)

source_name: 6 ug aRNA after T3 (I2)

tag: 6 ug aRNA after T3 (I2)


title: NP9E7

description:
Simple annotation: prostate cancer, Aging
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/16024.gif

source_name: CRF mRNA

tag: CRF mRNA


title: LN72r11b

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-02/2503.gif

source_name: ethanol

tag: ethanol


title: NP14E7

description:
Simple annotation: prostate cancer, Aging
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/16034.gif

source_name: 14E& immortalized cell strain

tag: 14E& immortalized cell strain


title: LAPC20r11b

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3241.gif


title: Na+FK 30min

description:
Simple annotation: salt treatment, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7763.gif

source_name: 0.8M NaCl +FK506 0min

tag: 0.8M NaCl +FK506 0min

source_name: 0.8M NaCl + FK506 30min

tag: 0.8M NaCl + FK506 30min


title: Na+FK 45min

description:
Simple annotation: salt treatment, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7764.gif

source_name: 0.8M NaCl + FK506 45min

tag: 0.8M NaCl + FK506 45min


title: Na+FK 15min

description:
Simple annotation: salt treatment, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7762.gif

source_name: 0.8M NaCl + FK506 15min

tag: 0.8M NaCl + FK506 15min


title: Na 60min

description:
Simple annotation: salt treatment, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7761.gif

source_name: 0.8M NaCl 0min

tag: 0.8M NaCl 0min

source_name: 0.8M NaCl 60min

tag: 0.8M NaCl 60min


title: Na 30min

description:
Simple annotation: salt treatment, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7759.gif

source_name: 0.8M NaCl 30min

tag: 0.8M NaCl 30min


title: 71 hrs R1881

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6997.gif

source_name: CR

tag: CR


title: 71 hrs ethanol

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6994.gif

source_name: 71 hrs ethanol control

tag: 71 hrs ethanol control


title: Na+FK 60min

description:
Simple annotation: salt treatment, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7765.gif

source_name: 0.8M NaCl + FK506 60min

tag: 0.8M NaCl + FK506 60min


title: LN9548r11b

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/5558.gif

source_name: ethanol control

tag: ethanol control


title: Na 45min

description:
Simple annotation: salt treatment, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7760.gif

source_name: 0.8M NaCl 45min

tag: 0.8M NaCl 45min


title: 8 hrs R1881

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/7043.gif


title: Na/Na+FK 45min (1)

description:
Simple annotation: salt treatment, NaCl
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13067.gif

source_name: Na 45min

tag: Na 45min

source_name: Na+FK 45min

tag: Na+FK 45min


title: mda2a20r11

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3244.gif


title: Na/Na+FK 30min (2)

description:
Simple annotation: salt treatment, NaCl
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13066.gif

source_name: Na 30min

tag: Na 30min

source_name: Na+FK 30min

tag: Na+FK 30min


title: wt/crz1 Ca 30min (2)

description:
Simple annotation: calcium, Transcription Factors
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13064.gif

source_name: wt under Ca 30min conditions

tag: wt under Ca 30min conditions

source_name: crz1 under Ca 30min conditions

tag: crz1 under Ca 30min conditions


title: wt/crz1 Ca 15min (1)

description:
Simple annotation: calcium, Transcription Factors
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13061.gif

source_name: wt under Ca 15min conditions

tag: wt under Ca 15min conditions

source_name: crz1 under Ca 15min conditions

tag: crz1 under Ca 15min conditions


title: Ca 60min (1)

description:
Simple annotation: calcium, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14763.gif

source_name: Ca 0min

tag: Ca 0min

source_name: Ca 60min

tag: Ca 60min


title: LN9849r11a

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-04/4464.gif


title: Ca/Ca+FK 30min (2)

description:
Simple annotation: calcium, osmotic
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13133.gif

source_name: Ca 30min

tag: Ca 30min

source_name: Ca+FK 30min

tag: Ca+FK 30min


title: Na/Na+FK 30min (1)

description:
Simple annotation: salt treatment, NaCl
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13065.gif


title: Ca+FK 60min (2)

description:
Simple annotation: calcium, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15638.gif

source_name: Ca+FK 0min

tag: Ca+FK 0min

source_name: Ca+FK 60min

tag: Ca+FK 60min


title: Ca+FK 30min (2)

description:
Simple annotation: calcium, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15636.gif


title: Na/Na+FK 45min (2)

description:
Simple annotation: salt treatment, NaCl
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13068.gif


title: wt/crz1 Na 45min (2)

description:
Simple annotation: salt treatment, Transcription Factors
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13060.gif

source_name: wt under Na 45min conditions

tag: wt under Na 45min conditions

source_name: crz1 under Na 45min conditions

tag: crz1 under Na 45min conditions


title: LN50r11

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-04/4961.gif

source_name: ethanol control

tag: ethanol control


title: wt/crz1 Ca 15min (2)

description:
Simple annotation: calcium, Transcription Factors
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13062.gif


title: MDA2b22r11

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/5151.gif


title: Ca+FK 15min (2)

description:
Simple annotation: calcium, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15635.gif

source_name: Ca+FK 15min

tag: Ca+FK 15min


title: Ca 30min (1)

description:
Simple annotation: calcium, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14761.gif


title: Ca 60min (2)

description:
Simple annotation: calcium, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15182.gif


title: LN24r11

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3259.gif

source_name: ethanol

tag: ethanol


title: Ca+FK 5min (2)

description:
Simple annotation: calcium, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15184.gif

source_name: Ca+FK 5min

tag: Ca+FK 5min


title: Ca 30min (2)

description:
Simple annotation: calcium, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15181.gif


title: Ca 15min (2)

description:
Simple annotation: calcium, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15180.gif

source_name: Ca 15min

tag: Ca 15min


title: Ca/Ca+FK 15min (1)

description:
Simple annotation: calcium, osmotic
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13069.gif


title: wt/crz1 Ca 30min (1)

description:
Simple annotation: calcium, Transcription Factors
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13063.gif

source_name: wt under Ca 30min conditions

tag: wt under Ca 30min conditions


title: Ca+FK 5min (3)

description:
Simple annotation: calcium, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15183.gif


title: LN18r11

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3250.gif


title: Na 15min

description:
Simple annotation: salt treatment, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7758.gif

source_name: 0.8M NaCl 0min

tag: 0.8M NaCl 0min

source_name: 0.8M NaCl 15min

tag: 0.8M NaCl 15min


title: LN18DHT10

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/5208.gif

source_name: 10 nM DHT

tag: 10 nM DHT


title: wt/crz1 Na 30min (2)

description:
Simple annotation: salt treatment, Transcription Factors
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13058.gif

source_name: wt under Na 30min conditions

tag: wt under Na 30min conditions

source_name: crz1 under Na 30min conditions

tag: crz1 under Na 30min conditions


title: Ca/Ca+FK 15min (2)

description:
Simple annotation: calcium, osmotic
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13070.gif


title: wt/crz1 Na 30min (1)

description:
Simple annotation: salt treatment, Transcription Factors
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13057.gif


title: wt/crz1 Na 45min (1)

description:
Simple annotation: salt treatment, Transcription Factors
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13059.gif


title: LN9770r11

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/5603.gif


title: Ca 5min (2)

description:
Simple annotation: calcium, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15179.gif

source_name: Ca 0min

tag: Ca 0min

source_name: Ca 5min

tag: Ca 5min


title: Ca+FK 15min (5)

description:
Simple annotation: calcium, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2001-06/17472.gif

source_name: Ca+FK 0min

tag: Ca+FK 0min


title: 16 hrs R1881

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6988.gif

source_name: CR

tag: CR


title: Ca/Ca+FK 30min (1)

description:
Simple annotation: calcium, osmotic
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13072.gif

source_name: Ca 30min

tag: Ca 30min

source_name: Ca+FK 30min

tag: Ca+FK 30min


title: Ca+FK 30min (5)

description:
Simple annotation: calcium, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2001-06/17473.gif


title: Ca+FK 60min (5)

description:
Simple annotation: calcium, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2001-06/17618.gif

source_name: Ca+FK 60min

tag: Ca+FK 60min


title: Ca 15min (1)

description:
Simple annotation: calcium, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14712.gif


title: LAPC4AD48r11a

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/6365.gif


title: Ca 5min (1)

description:
Simple annotation: calcium, Time course
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14711.gif


title: MDA2B50r11a

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/5949.gif

source_name: ethanol control

tag: ethanol control


title: MDA2A48r11a

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/5890.gif


title: LN9648r1

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6729.gif


title: 8 hrs ethanol

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6991.gif

source_name: 8 hrs ethanol control

tag: 8 hrs ethanol control


title: LN24DHT100

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14520.gif

source_name: ethanol  control

tag: ethanol  control

source_name: 100 nM DHT 24 hrs

tag: 100 nM DHT 24 hrs


title: 32 hrs ethanol

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6985.gif

source_name: 32 hrs ethanol control

tag: 32 hrs ethanol control


title: 32 hrs R1881

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6983.gif


title: 16 hrs. ethanol

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6982.gif

source_name: 16 hrs ethanol control

tag: 16 hrs ethanol control


title: LN24DHT1000

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14516.gif

source_name: 1000 nM DHT

tag: 1000 nM DHT


title: STT616-LEIO

status: Public on Oct 13 2005

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-10/10484.gif

source_name: CRF mRNA

tag: CRF mRNA

source_name: STT 616 mRNA

tag: STT 616 mRNA


title: STT646-GIST-exon11

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-10/10498.gif

source_name: STT 646 mRNA

tag: STT 646 mRNA


title: STT111C-GIST-exon11

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/14709.gif

source_name: CRG mRNA

tag: CRG mRNA

source_name: STT111C mRNA

tag: STT111C mRNA


title: STT108-SS

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-10/10842.gif

source_name: STT 108 mRNA

tag: STT 108 mRNA


title: STT656-GIST-exon11

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/10497.gif

source_name: STT 656 mRNA

tag: STT 656 mRNA


title: STT1324B-SSrec816

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15185.gif

source_name: STT1324B mRNA

tag: STT1324B mRNA


title: STT398C-LIPO

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/15251.gif

source_name: STT398C mRNA

tag: STT398C mRNA


title: STT516C-LEIO

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14705.gif

source_name: STT516C mRNA

tag: STT516C mRNA


title: STT335C-GIST-exon11

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/15255.gif

source_name: STT335C mRNA

tag: STT335C mRNA


title: FT179B-Mel

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/14240.gif

source_name: FT179B mRNA

tag: FT179B mRNA


title: STT607-Met.523

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/10481.gif

source_name: STT 607 mRNA

tag: STT 607 mRNA


title: STT641-LEIO

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-10/10489.gif

source_name: STT 641 mRNA

tag: STT 641 mRNA


title: STT390B-LIPO

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/14707.gif

source_name: STT390B mRNA

tag: STT390B mRNA


title: STT108B-SS

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/16275.gif

source_name: STT108B mRNA

tag: STT108B mRNA


title: STT1148B-GIST-PDGFRa

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/15188.gif

source_name: STT1148B mRNA

tag: STT1148B mRNA


title: STT398B-LIPO

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/14706.gif

source_name: STT398B mRNA

tag: STT398B mRNA


title: STT850-SS

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/16484.gif

source_name: STT850 mRNA

tag: STT850 mRNA


title: STT794-GIST-PDGFRa

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/10626.gif

source_name: CRF mRNA

tag: CRF mRNA

source_name: STT 794 mRNA

tag: STT 794 mRNA


title: STT865-SS

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/16485.gif

source_name: CRG mRNA

tag: CRG mRNA

source_name: STT865 mRNA

tag: STT865 mRNA


title: STT516D-LEIO

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/15246.gif

source_name: STT7516D mRNA

tag: STT7516D mRNA


title: STT742C-LEIO

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15351.gif

source_name: STT742C mRNA

tag: STT742C mRNA


title: STT739B-LEIO

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14900.gif

source_name: STT739B-LEIO mRNA

tag: STT739B-LEIO mRNA


title: STT094B-1-GIST

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/17341.gif

source_name: STT094B-1 mRNA

tag: STT094B-1 mRNA


title: STT1220C-Leiomyosarcoma

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15187.gif

source_name: STT1220C mRNA

tag: STT1220C mRNA


title: STT710B-MFH

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/15352.gif

source_name: STT710B mRNA

tag: STT710B mRNA


title: STT419-LIPO/MYX

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7633.gif

source_name: CRE mRNA

tag: CRE mRNA

source_name: 419 mRNA

tag: 419 mRNA


title: STT524-Schwannoma

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/8054.gif

source_name: 524 mRNA

tag: 524 mRNA


title: STT889-MFH/III

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12569.gif

source_name: STT 889 mRNA

tag: STT 889 mRNA


title: STT525-LEIO

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/8052.gif

source_name: 525 mRNA

tag: 525 mRNA


title: STT117-SS

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/8395.gif

source_name: STT 117 mRNA

tag: STT 117 mRNA


title: STT890-MFH

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/15354.gif

source_name: STT890 mRNA

tag: STT890 mRNA


title: STT894-MFH/II

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/12575.gif

source_name: CRF mRNA

tag: CRF mRNA

source_name: STT 894 mRNA

tag: STT 894 mRNA


title: STT094-GIST-exon9

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/8394.gif

source_name: STT 94 mRNA

tag: STT 94 mRNA


title: STT219-GIST

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/8393.gif

source_name: STT 219 mRNA

tag: STT 219 mRNA


title: Tc control

description:
Simple annotation: Hepatitis C, tetracycline induction
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/7032.gif

source_name: mock 2h

tag: mock 2h


title: STT535-SS

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/8397.gif

source_name: STT 535 mRNA

tag: STT 535 mRNA


title: STT418-MFH

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7627.gif

source_name: 418 mRNA

tag: 418 mRNA


title: Tc 6h

description:
Simple annotation: Hepatitis C, tetracycline induction
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/7017.gif

source_name: mock 6h

tag: mock 6h

source_name: RRV 6h

tag: RRV 6h


title: Tc 24h

description:
Simple annotation: Hepatitis C, tetracycline induction
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/7021.gif

source_name: mock 24h

tag: mock 24h

source_name: RRV 24h

tag: RRV 24h


title: Infection 1 RRVa 16h vs mocka16h

description:
Simple annotation: Rotavirus, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15671.gif

source_name: mocka 16h

tag: mocka 16h

source_name: RRVa 16h

tag: RRVa 16h


title: self-self homotypical VL10 vs. VL10 (tech. repl. 6)

status: Public on Oct 08 2005

city: Ribeirao Preto

first: Ricardo

last: Vêncio

state: SP

address: Av. Bandeirantes, 3900

department: Computing and Mathematics Department

country: Brazil

institute: Universidade de São Paulo

description:
Self-self homotypical control experiment. VL10 vs. VL10 (isolated from assymptomatic patient). RNA targets - 5 x 108 parasite cells were lysed in 1ml Trizol (Invitrogen) and total RNA was extracted according to the manufacturer's protocol. RNA was DNase-treated and approximately 20 mg was labelled with fluorophor-labelled dCTP in the first-strand cDNA synthesis. The reaction mix contained 0.05 mM of either Cy3- or Cy5-dCTP, 1 ml oligo-dT(15) primer (Amersham Biosciences), 4 ml of random nonamers (Amersham), 0.1 mM each of dATP, dCTP, dTTP and 0.05 mM dCTP, 10 mM dithiothreitol and 400 units of Superscript II Reverse Trascriptase (Invitrogen) in the buffer provided by the manufacturer. Incubation was performed at 42oC for 2.5 h. Subsequently, RNA was hydrolysed by addition of 2 ml 2.5 M NaOH and an incubation at 37ºC for 15 min. The solution was neutralised by addition of 10 ml 2 M Hepes. The samples were purified with Multiscreen plates (Millipore). The incorporation was determined by photometric measurement (550 nm for Cy3 and 650 nm for Cy5). The samples were dried in vacuum and dissolved in H2O to reach 25% of the solution plus 25% hybridisation buffer (Amersham Pharmacia) and 50% formamide. DNA was denatured at 98oC for 2 min. Hybridisation to the array was performed under a glass cover-slide (24 x 60 mm). The slides were kept in a waterproof hybridisation chamber in a 42oC water bath for at least 16h. After hybridisation, slides were washed with 1 x SSC, 0.2% SDS, followed by two washes in 0.1 x SSC, 0.2% SDS. All washings were performed at 55oC for 10 min. An additional wash was performed at RT in 0.1 x SSC for one min. Slides were dried and subjected to fluorescence detection. Image analysis - The slides were scanned with a laser scanner (Molecular Dynamics) resulting in 16-bit images. Intensities were extracted using ArrayVision 6.0 (Image Research) software. Normalisation of the hybridisation data was achieved by LOWESS fitting.
Keywords = strains comparison

organism: Trypanosoma cruzi

source_name: VL10 (reference)


title: Tc 1h

description:
Simple annotation: Hepatitis C, tetracycline induction
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/7031.gif

source_name: mock 1h

tag: mock 1h

source_name: RRV 1h

tag: RRV 1h


title: Control 3 RRVa 16h vs RRVb 16h

description:
Simple annotation: Rotavirus, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15668.gif

source_name: RRVb 16h

tag: RRVb 16h


title: Tc 12h

description:
Simple annotation: Hepatitis C, tetracycline induction
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/7015.gif

source_name: mock 12h

tag: mock 12h

source_name: RRV 12h

tag: RRV 12h


title: STT709-1-MFH

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/17316.gif

source_name: CRF mRNA

tag: CRF mRNA

source_name: STT709-1 mRMA

tag: STT709-1 mRMA


title: STT420-MFH

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7640.gif

source_name: CRE mRNA

tag: CRE mRNA

source_name: 420 mRNA

tag: 420 mRNA


title: self-self homotypical VL10 vs. VL10 (tech. repl. 3)


title: STT840B-LEIO

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/16148.gif

source_name: CRG mRNA

tag: CRG mRNA

source_name: STT840B mRNA

tag: STT840B mRNA


title: Control 4 mocka 1h vs mockb 1h

description:
Simple annotation: Rotavirus, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15673.gif

source_name: mockb 1h

tag: mockb 1h

source_name: mocka 1h

tag: mocka 1h


title: STT563-LIPO/DEDIFF

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/8729.gif

source_name: STT 563 mRNA

tag: STT 563 mRNA


title: STT417-MFH

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7621.gif

source_name: 417 mRNA

tag: 417 mRNA


title: STT526C-1-LEIO

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2001-06/17319.gif

source_name: STT526C-1 mRNA

tag: STT526C-1 mRNA


title: STT523-LEIO

description:
Simple annotation: Primary tumor, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/8051.gif

source_name: 523 mRNA

tag: 523 mRNA


title: Infection 4 RRVa 1h vs mocka 1h

description:
Simple annotation: Rotavirus, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15670.gif

source_name: RRVa 1h

tag: RRVa 1h


title: Control 5 mockc 1h vs mocka 1h

description:
Simple annotation: Rotavirus, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15674.gif

source_name: mockc 1h

tag: mockc 1h


title: Infection 3 RRVb 16h vs mocka 16h

description:
Simple annotation: Rotavirus, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15679.gif

source_name: mocka 16h

tag: mocka 16h

source_name: RRVb 16h

tag: RRVb 16h


title: self-self homotypical VL10 vs. VL10 (tech. repl. 1)

source_name: VL10 (reference)


title: Berenice vs. VL10 (bio. repl. 2, tech repl. 2)

description:
VL10 (isolated from assymptomatic patient) vs. Berenice (isolated from assymptomatic patient). RNA targets - 5 x 108 parasite cells were lysed in 1ml Trizol (Invitrogen) and total RNA was extracted according to the manufacturer's protocol. RNA was DNase-treated and approximately 20 mg was labelled with fluorophor-labelled dCTP in the first-strand cDNA synthesis. The reaction mix contained 0.05 mM of either Cy3- or Cy5-dCTP, 1 ml oligo-dT(15) primer (Amersham Biosciences), 4 ml of random nonamers (Amersham), 0.1 mM each of dATP, dCTP, dTTP and 0.05 mM dCTP, 10 mM dithiothreitol and 400 units of Superscript II Reverse Trascriptase (Invitrogen) in the buffer provided by the manufacturer. Incubation was performed at 42oC for 2.5 h. Subsequently, RNA was hydrolysed by addition of 2 ml 2.5 M NaOH and an incubation at 37ºC for 15 min. The solution was neutralised by addition of 10 ml 2 M Hepes. The samples were purified with Multiscreen plates (Millipore). The incorporation was determined by photometric measurement (550 nm for Cy3 and 650 nm for Cy5). The samples were dried in vacuum and dissolved in H2O to reach 25% of the solution plus 25% hybridisation buffer (Amersham Pharmacia) and 50% formamide. DNA was denatured at 98oC for 2 min. Hybridisation to the array was performed under a glass cover-slide (24 x 60 mm). The slides were kept in a waterproof hybridisation chamber in a 42oC water bath for at least 16h. After hybridisation, slides were washed with 1 x SSC, 0.2% SDS, followed by two washes in 0.1 x SSC, 0.2% SDS. All washings were performed at 55oC for 10 min. An additional wash was performed at RT in 0.1 x SSC for one min. Slides were dried and subjected to fluorescence detection. Image analysis - The slides were scanned with a laser scanner (Molecular Dynamics) resulting in 16-bit images. Intensities were extracted using ArrayVision 6.0 (Image Research) software. Normalisation of the hybridisation data was achieved by LOWESS fitting.
Keywords = strains comparison

source_name: Berenice


title: Infection 5 RRVb 1h vs mockb 1h

description:
Simple annotation: Rotavirus, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15669.gif

source_name: RRVb 1h

tag: RRVb 1h


title: STT638-SS

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/16486.gif

source_name: STT638 mRNA

tag: STT638 mRNA


title: STT629B-Schwannoma

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/16153.gif

source_name: STT629B mRNA

tag: STT629B mRNA


title: Berenice vs. VL10 (bio. repl. 1, tech repl. 1)


title: Control 1 mocka16h vs mockb 16h

description:
Simple annotation: Rotavirus, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15675.gif

source_name: mockb 16h

tag: mockb 16h


title: B13 vs. VL10 (bio. repl. 2, tech repl. 2)

description:
VL10 (isolated from assymptomatic patient) vs. B13 (isolated from cardiac patient). RNA targets - 5 x 108 parasite cells were lysed in 1ml Trizol (Invitrogen) and total RNA was extracted according to the manufacturer's protocol. RNA was DNase-treated and approximately 20 mg was labelled with fluorophor-labelled dCTP in the first-strand cDNA synthesis. The reaction mix contained 0.05 mM of either Cy3- or Cy5-dCTP, 1 ml oligo-dT(15) primer (Amersham Biosciences), 4 ml of random nonamers (Amersham), 0.1 mM each of dATP, dCTP, dTTP and 0.05 mM dCTP, 10 mM dithiothreitol and 400 units of Superscript II Reverse Trascriptase (Invitrogen) in the buffer provided by the manufacturer. Incubation was performed at 42oC for 2.5 h. Subsequently, RNA was hydrolysed by addition of 2 ml 2.5 M NaOH and an incubation at 37ºC for 15 min. The solution was neutralised by addition of 10 ml 2 M Hepes. The samples were purified with Multiscreen plates (Millipore). The incorporation was determined by photometric measurement (550 nm for Cy3 and 650 nm for Cy5). The samples were dried in vacuum and dissolved in H2O to reach 25% of the solution plus 25% hybridisation buffer (Amersham Pharmacia) and 50% formamide. DNA was denatured at 98oC for 2 min. Hybridisation to the array was performed under a glass cover-slide (24 x 60 mm). The slides were kept in a waterproof hybridisation chamber in a 42oC water bath for at least 16h. After hybridisation, slides were washed with 1 x SSC, 0.2% SDS, followed by two washes in 0.1 x SSC, 0.2% SDS. All washings were performed at 55oC for 10 min. An additional wash was performed at RT in 0.1 x SSC for one min. Slides were dried and subjected to fluorescence detection. Image analysis - The slides were scanned with a laser scanner (Molecular Dynamics) resulting in 16-bit images. Intensities were extracted using ArrayVision 6.0 (Image Research) software. Normalisation of the hybridisation data was achieved by LOWESS fitting.
Keywords = strains comparison


title: self-self homotypical VL10 vs. VL10 (tech. repl. 4)

description:
Self-self homotypical control experiment. VL10 vs. VL10 (isolated from assymptomatic patient). RNA targets - 5 x 108 parasite cells were lysed in 1ml Trizol (Invitrogen) and total RNA was extracted according to the manufacturer's protocol. RNA was DNase-treated and approximately 20 mg was labelled with fluorophor-labelled dCTP in the first-strand cDNA synthesis. The reaction mix contained 0.05 mM of either Cy3- or Cy5-dCTP, 1 ml oligo-dT(15) primer (Amersham Biosciences), 4 ml of random nonamers (Amersham), 0.1 mM each of dATP, dCTP, dTTP and 0.05 mM dCTP, 10 mM dithiothreitol and 400 units of Superscript II Reverse Trascriptase (Invitrogen) in the buffer provided by the manufacturer. Incubation was performed at 42oC for 2.5 h. Subsequently, RNA was hydrolysed by addition of 2 ml 2.5 M NaOH and an incubation at 37ºC for 15 min. The solution was neutralised by addition of 10 ml 2 M Hepes. The samples were purified with Multiscreen plates (Millipore). The incorporation was determined by photometric measurement (550 nm for Cy3 and 650 nm for Cy5). The samples were dried in vacuum and dissolved in H2O to reach 25% of the solution plus 25% hybridisation buffer (Amersham Pharmacia) and 50% formamide. DNA was denatured at 98oC for 2 min. Hybridisation to the array was performed under a glass cover-slide (24 x 60 mm). The slides were kept in a waterproof hybridisation chamber in a 42oC water bath for at least 16h. After hybridisation, slides were washed with 1 x SSC, 0.2% SDS, followed by two washes in 0.1 x SSC, 0.2% SDS. All washings were performed at 55oC for 10 min. An additional wash was performed at RT in 0.1 x SSC for one min. Slides were dried and subjected to fluorescence detection. Image analysis - The slides were scanned with a laser scanner (Molecular Dynamics) resulting in 16-bit images. Intensities were extracted using ArrayVision 6.0 (Image Research) software. Normalisation of the hybridisation data was achieved by LOWESS fitting.
Keywords = strains comparison


title: B13 vs. VL10 (bio. repl. 2, tech repl. 1)


title: B13 vs. VL10 (bio. repl. 1, tech repl. 2)


title: B13 vs. VL10 (bio. repl. 1, tech repl. 1)


title: B147 vs. VL10 (bio. repl. 2, tech repl. 1)

description:
VL10 (isolated from assymptomatic patient) vs. B147 (isolated from cardiac patient). RNA targets - 5 x 108 parasite cells were lysed in 1ml Trizol (Invitrogen) and total RNA was extracted according to the manufacturer's protocol. RNA was DNase-treated and approximately 20 mg was labelled with fluorophor-labelled dCTP in the first-strand cDNA synthesis. The reaction mix contained 0.05 mM of either Cy3- or Cy5-dCTP, 1 ml oligo-dT(15) primer (Amersham Biosciences), 4 ml of random nonamers (Amersham), 0.1 mM each of dATP, dCTP, dTTP and 0.05 mM dCTP, 10 mM dithiothreitol and 400 units of Superscript II Reverse Trascriptase (Invitrogen) in the buffer provided by the manufacturer. Incubation was performed at 42oC for 2.5 h. Subsequently, RNA was hydrolysed by addition of 2 ml 2.5 M NaOH and an incubation at 37ºC for 15 min. The solution was neutralised by addition of 10 ml 2 M Hepes. The samples were purified with Multiscreen plates (Millipore). The incorporation was determined by photometric measurement (550 nm for Cy3 and 650 nm for Cy5). The samples were dried in vacuum and dissolved in H2O to reach 25% of the solution plus 25% hybridisation buffer (Amersham Pharmacia) and 50% formamide. DNA was denatured at 98oC for 2 min. Hybridisation to the array was performed under a glass cover-slide (24 x 60 mm). The slides were kept in a waterproof hybridisation chamber in a 42oC water bath for at least 16h. After hybridisation, slides were washed with 1 x SSC, 0.2% SDS, followed by two washes in 0.1 x SSC, 0.2% SDS. All washings were performed at 55oC for 10 min. An additional wash was performed at RT in 0.1 x SSC for one min. Slides were dried and subjected to fluorescence detection. Image analysis - The slides were scanned with a laser scanner (Molecular Dynamics) resulting in 16-bit images. Intensities were extracted using ArrayVision 6.0 (Image Research) software. Normalisation of the hybridisation data was achieved by LOWESS fitting.
Keywords = strains comparison


title: B147 vs. VL10 (bio. repl. 2, tech repl. 2)


title: B115 vs. VL10 (bio. repl. 2, tech repl. 2)

description:
VL10 (isolated from assymptomatic patient) vs. B115 (isolated from cardiac patient). RNA targets - 5 x 108 parasite cells were lysed in 1ml Trizol (Invitrogen) and total RNA was extracted according to the manufacturer's protocol. RNA was DNase-treated and approximately 20 mg was labelled with fluorophor-labelled dCTP in the first-strand cDNA synthesis. The reaction mix contained 0.05 mM of either Cy3- or Cy5-dCTP, 1 ml oligo-dT(15) primer (Amersham Biosciences), 4 ml of random nonamers (Amersham), 0.1 mM each of dATP, dCTP, dTTP and 0.05 mM dCTP, 10 mM dithiothreitol and 400 units of Superscript II Reverse Trascriptase (Invitrogen) in the buffer provided by the manufacturer. Incubation was performed at 42oC for 2.5 h. Subsequently, RNA was hydrolysed by addition of 2 ml 2.5 M NaOH and an incubation at 37ºC for 15 min. The solution was neutralised by addition of 10 ml 2 M Hepes. The samples were purified with Multiscreen plates (Millipore). The incorporation was determined by photometric measurement (550 nm for Cy3 and 650 nm for Cy5). The samples were dried in vacuum and dissolved in H2O to reach 25% of the solution plus 25% hybridisation buffer (Amersham Pharmacia) and 50% formamide. DNA was denatured at 98oC for 2 min. Hybridisation to the array was performed under a glass cover-slide (24 x 60 mm). The slides were kept in a waterproof hybridisation chamber in a 42oC water bath for at least 16h. After hybridisation, slides were washed with 1 x SSC, 0.2% SDS, followed by two washes in 0.1 x SSC, 0.2% SDS. All washings were performed at 55oC for 10 min. An additional wash was performed at RT in 0.1 x SSC for one min. Slides were dried and subjected to fluorescence detection. Image analysis - The slides were scanned with a laser scanner (Molecular Dynamics) resulting in 16-bit images. Intensities were extracted using ArrayVision 6.0 (Image Research) software. Normalisation of the hybridisation data was achieved by LOWESS fitting.
Keywords = strains comparison


title: Berenice vs. VL10 (bio. repl. 2, tech repl. 1)


title: Control 2 mockc 16h vs mocka 16h

description:
Simple annotation: Rotavirus, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15676.gif

source_name: mockc 16h

tag: mockc 16h


title: STT656B-GIST-exon11

description:
Simple annotation: Primary tumor, Disease response
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/16122.gif

source_name: CRG mRNA

tag: CRG mRNA

source_name: STT656B mRNA

tag: STT656B mRNA


title: Berenice vs. VL10 (bio. repl. 1, tech repl. 2)


title: B147 vs. VL10 (bio. repl. 1, tech repl. 2)


title: B115 vs. VL10 (bio. repl. 2, tech repl. 1)


title: B115 vs. VL10 (bio. repl. 1, tech repl. 1)


title: B147 vs. VL10 (bio. repl. 1, tech repl. 1)


title: FAMEMA vs. VL10 (bio. repl. 2, tech repl. 1)

description:
VL10 (isolated from assymptomatic patient) vs. FAMEMA (isolated from assymptomatic patient). RNA targets - 5 x 108 parasite cells were lysed in 1ml Trizol (Invitrogen) and total RNA was extracted according to the manufacturer's protocol. RNA was DNase-treated and approximately 20 mg was labelled with fluorophor-labelled dCTP in the first-strand cDNA synthesis. The reaction mix contained 0.05 mM of either Cy3- or Cy5-dCTP, 1 ml oligo-dT(15) primer (Amersham Biosciences), 4 ml of random nonamers (Amersham), 0.1 mM each of dATP, dCTP, dTTP and 0.05 mM dCTP, 10 mM dithiothreitol and 400 units of Superscript II Reverse Trascriptase (Invitrogen) in the buffer provided by the manufacturer. Incubation was performed at 42oC for 2.5 h. Subsequently, RNA was hydrolysed by addition of 2 ml 2.5 M NaOH and an incubation at 37ºC for 15 min. The solution was neutralised by addition of 10 ml 2 M Hepes. The samples were purified with Multiscreen plates (Millipore). The incorporation was determined by photometric measurement (550 nm for Cy3 and 650 nm for Cy5). The samples were dried in vacuum and dissolved in H2O to reach 25% of the solution plus 25% hybridisation buffer (Amersham Pharmacia) and 50% formamide. DNA was denatured at 98oC for 2 min. Hybridisation to the array was performed under a glass cover-slide (24 x 60 mm). The slides were kept in a waterproof hybridisation chamber in a 42oC water bath for at least 16h. After hybridisation, slides were washed with 1 x SSC, 0.2% SDS, followed by two washes in 0.1 x SSC, 0.2% SDS. All washings were performed at 55oC for 10 min. An additional wash was performed at RT in 0.1 x SSC for one min. Slides were dried and subjected to fluorescence detection. Image analysis - The slides were scanned with a laser scanner (Molecular Dynamics) resulting in 16-bit images. Intensities were extracted using ArrayVision 6.0 (Image Research) software. Normalisation of the hybridisation data was achieved by LOWESS fitting.
Keywords = strains comparison

source_name: FAMEMA


title: B115 vs. VL10 (bio. repl. 1, tech repl. 2)


title: FAMEMA vs. VL10 (bio. repl. 1, tech repl. 2)

description:
VL10 (isolated from assymptomatic patient) vs. FAMEMA (isolated from assymptomatic patient). RNA targets - 5 x 108 parasite cells were lysed in 1ml Trizol (Invitrogen) and total RNA was extracted according to the manufacturer's protocol. RNA was DNase-treated and approximately 20 mg was labelled with fluorophor-labelled dCTP in the first-strand cDNA synthesis. The reaction mix contained 0.05 mM of either Cy3- or Cy5-dCTP, 1 ml oligo-dT(15) primer (Amersham Biosciences), 4 ml of random nonamers (Amersham), 0.1 mM each of dATP, dCTP, dTTP and 0.05 mM dCTP, 10 mM dithiothreitol and 400 units of Superscript II Reverse Trascriptase (Invitrogen) in the buffer provided by the manufacturer. Incubation was performed at 42oC for 2.5 h. Subsequently, RNA was hydrolysed by addition of 2 ml 2.5 M NaOH and an incubation at 37ºC for 15 min. The solution was neutralised by addition of 10 ml 2 M Hepes. The samples were purified with Multiscreen plates (Millipore). The incorporation was determined by photometric measurement (550 nm for Cy3 and 650 nm for Cy5). The samples were dried in vacuum and dissolved in H2O to reach 25% of the solution plus 25% hybridisation buffer (Amersham Pharmacia) and 50% formamide. DNA was denatured at 98oC for 2 min. Hybridisation to the array was performed under a glass cover-slide (24 x 60 mm). The slides were kept in a waterproof hybridisation chamber in a 42oC water bath for at least 16h. After hybridisation, slides were washed with 1 x SSC, 0.2% SDS, followed by two washes in 0.1 x SSC, 0.2% SDS. All washings were performed at 55oC for 10 min. An additional wash was performed at RT in 0.1 x SSC for one min. Slides were dried and subjected to fluorescence detection. Image analysis - The slides were scanned with a laser scanner (Molecular Dynamics) resulting in 16-bit images. Intensities were extracted using ArrayVision 6.0 (Image Research) software. Normalisation of the hybridisation data was achieved by LOWESS fitting.

Keywords = strains comparison


title: FAMEMA vs. VL10 (bio. repl. 2, tech repl. 2)


title: FAMEMA vs. VL10 (bio. repl. 1, tech repl. 1)

description:
VL10 (isolated from assymptomatic patient) vs. FAMEMA (isolated from assymptomatic patient)

RNA targets - 5 x 108 parasite cells were lysed in 1ml Trizol (Invitrogen) and total RNA was extracted according to the manufacturer's protocol. RNA was DNase-treated and approximately 20 mg was labelled with fluorophor-labelled dCTP in the first-strand cDNA synthesis. The reaction mix contained 0.05 mM of either Cy3- or Cy5-dCTP, 1 ml oligo-dT(15) primer (Amersham Biosciences), 4 ml of random nonamers (Amersham), 0.1 mM each of dATP, dCTP, dTTP and 0.05 mM dCTP, 10 mM dithiothreitol and 400 units of Superscript II Reverse Trascriptase (Invitrogen) in the buffer provided by the manufacturer. Incubation was performed at 42oC for 2.5 h. Subsequently, RNA was hydrolysed by addition of 2 ml 2.5 M NaOH and an incubation at 37ºC for 15 min. The solution was neutralised by addition of 10 ml 2 M Hepes. The samples were purified with Multiscreen plates (Millipore). The incorporation was determined by photometric measurement (550 nm for Cy3 and 650 nm for Cy5).  The samples were dried in vacuum and dissolved in H2O to reach 25% of the solution plus 25% hybridisation buffer (Amersham Pharmacia) and 50% formamide. DNA was denatured at 98oC for 2 min. Hybridisation to the array was performed under a glass cover-slide (24 x 60 mm). The slides were kept in a waterproof hybridisation chamber in a 42oC water bath for at least 16h. After hybridisation, slides were washed with 1 x SSC, 0.2% SDS, followed by two washes in 0.1 x SSC, 0.2% SDS. All washings were performed at 55oC for 10 min. An additional wash was performed at RT in 0.1 x SSC for one min. Slides were dried and subjected to fluorescence detection.

Image analysis - The slides were scanned with a laser scanner (Molecular Dynamics) resulting in 16-bit images. Intensities were extracted using ArrayVision 6.0 (Image Research) software. Normalisation of the hybridisation data was achieved by LOWESS fitting.
Keywords = strains comparison


title: self-self homotypical DNA CL Brener (replicate)

type: genomic

description:
Self-self (homotypical) control experiment.

DNA targets - Whole genomic DNA of CL Brener and Silvio strains was purified. Targets for hybridisation were generated from DNA templates by incorporation of fluorophor-labelled dCTP in a random primer polymerisation reaction. In brief, 50 ml labelling reaction contained 4 mg DNA, 60 mM of either Cy3- or Cy5-dCTP (Amersham Biosciences), 50 mM Tris-HCl pH 6.8, 5 mM MgCl2, 10 mM 2-mercaptoethanol, 0.12 mM each dATP, dGTP, dTTP and 0.06 mM dCTP, 1 ml of random nonamers (Amersham) and 80 U of Klenow DNA polymerase (GIBCO-BRL). Incubation was at 37oC for 2 h. The reaction was stopped by addition of 5 ml 0.5 M EDTA and the products were purified with Multiscreen plates (Millipore). The incorporation was determined by photometric measurement (550 nm for Cy3 and 650 nm for Cy5). The samples were dried in vacuum and dissolved in H2O to reach 25% of the solution plus 25% hybridisation buffer (Amersham Pharmacia) and 50% formamide. DNA was denatured at 98oC for 2 min. Hybridisation to the array was performed under a glass cover-slide (24 x 60 mm). The slides were kept in a waterproof hybridisation chamber in a 42oC water bath for at least 16h. After hybridisation, slides were washed with 1 x SSC, 0.2% SDS, followed by two washes in 0.1 x SSC, 0.2% SDS. All washings were performed at 55oC for 10 min. An additional wash was performed at RT in 0.1 x SSC for one min. Slides were dried and subjected to fluorescence detection.

Image analysis - The slides were scanned with a laser scanner (Molecular Dynamics) resulting in 16-bit images. Intensities were extracted using ArrayVision 6.0 (Image Research) software. Normalisation of the hybridisation data was achieved by LOWESS fitting
Keywords = homotypical
Keywords = LOWESS
Keywords = self-self

molecule: genomic DNA

source_name: DNA CL Brener


title: self-self homotypical DNA CL Brener

description:
Self-self (homotypical) control experiment.

DNA targets - Whole genomic DNA of CL Brener and Silvio strains was purified. Targets for hybridisation were generated from DNA templates by incorporation of fluorophor-labelled dCTP in a random primer polymerisation reaction. In brief, 50 ml labelling reaction contained 4 mg DNA, 60 mM of either Cy3- or Cy5-dCTP (Amersham Biosciences), 50 mM Tris-HCl pH 6.8, 5 mM MgCl2, 10 mM 2-mercaptoethanol, 0.12 mM each dATP, dGTP, dTTP and 0.06 mM dCTP, 1 ml of random nonamers (Amersham) and 80 U of Klenow DNA polymerase (GIBCO-BRL). Incubation was at 37oC for 2 h. The reaction was stopped by addition of 5 ml 0.5 M EDTA and the products were purified with Multiscreen plates (Millipore). The incorporation was determined by photometric measurement (550 nm for Cy3 and 650 nm for Cy5).  The samples were dried in vacuum and dissolved in H2O to reach 25% of the solution plus 25% hybridisation buffer (Amersham Pharmacia) and 50% formamide. DNA was denatured at 98oC for 2 min. Hybridisation to the array was performed under a glass cover-slide (24 x 60 mm). The slides were kept in a waterproof hybridisation chamber in a 42oC water bath for at least 16h. After hybridisation, slides were washed with 1 x SSC, 0.2% SDS, followed by two washes in 0.1 x SSC, 0.2% SDS. All washings were performed at 55oC for 10 min. An additional wash was performed at RT in 0.1 x SSC for one min. Slides were dried and subjected to fluorescence detection.

Image analysis - The slides were scanned with a laser scanner (Molecular Dynamics) resulting in 16-bit images. Intensities were extracted using ArrayVision 6.0 (Image Research) software.  Normalisation of the hybridisation data was achieved by LOWESS fitting
Keywords = homotypical
Keywords = LOWESS
Keywords = self-self


title: Potato_vs_N_benthamiana_2

status: Public on Oct 03 2005

city: Rockville

first: Li

last: Zheng

state: MD

address: 9712 Medical Center Dr.

institute: The Institute for Genomic Research

description: Six different Solanaceae species, Potato (Solanum tubersosum), Tomato (Lycopersicum esculentum), Pepper (Capsicum annuum), Tobacco (Nicotiana tabaccum), Petunia and Nicotiana benthiamana were grown at 25C, 16h light and 8h darkness. Mature leaves were harvested after 4-6 weeks. RNA was isolated using Qiagen RNeasy. Tomato, pepper, petunia tobacco and N. benthamiana samples were hybridized against potato samples.

data_processing: The TIFF images were quantified using Genepix 5.0. Local background was subtracted from the signal value and the data was normalized using the quantile method in the limma package of bioconductor.

organism: Nicotiana benthamiana

growth_protocol: 25C; 16 hr light, 8 hr dark

treatment_protocol: No treatment

tag: Nicotiana benthamiana, leaves, Development

organism: Solanum tuberosum

tag: Solanum tuberosum, leaves, Development


title: Potato_vs_Tobacco_2

organism: Nicotiana tabacum

tag: Nicotiana tabacum, leaves, Development


title: Potato_vs_Tomato_2

organism: Solanum lycopersicum

tag: Lycopersicon esculentum, leaves, Development


title: Potato_vs_Petunia_1

organism: Petunia x hybrida

tag: Petunia hybrida, leaves, Development


title: Potato_vs_Pepper_1

organism: Capsicum annuum

tag: Capsicum annuum, leaves, Development


title: Potato_vs_Tomato_1


title: Potato_vs_N_benthamiana_1


title: Potato_vs_Pepper_2


title: Infection 2 RRVb 16h vs mockb 16h

description:
Simple annotation: Rotavirus, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15672.gif


title: Potato_vs_Tobacco_1


title: Potato_vs_Petunia_2


title: 75-95_combined

status: Public on Sep 30 2005

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13229.gif

source_name: CRE reference

tag: CRE reference


title: 257-97_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11370.gif


title: self-self homotypical VL10 vs. VL10 (tech. repl. 5)


title: self-self homotypical VL10 vs. VL10 (tech. repl. 2)


title: 58-95_SCC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/5715.gif


title: 299-99_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13873.gif


title: 313-99PT_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13909.gif


title: 180-96_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13081.gif


title: 11-00_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6799.gif


title: 199-97_Adeno_p

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9141.gif


title: 132-95_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11227.gif


title: 199-97_Adeno_c

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9231.gif


title: 319-00PT_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/8826.gif


title: 68-96_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12813.gif


title: 239-97_SCC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs//7270.gif


title: 315-99_node

description:
Simple annotation: Lymph node metastasis, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11580.gif


title: 313-99MT_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13934.gif


title: 204-97_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-10/11035.gif


title: 319-00MT1_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/8823.gif


title: 137-96_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11712.gif


title: 256-97_LCLC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7982.gif


title: 230-97_SCLC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-10/10954.gif


title: 156-96_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11178.gif


title: 178-96_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13022.gif


title: 166-96_SCC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11571.gif


title: 80-96_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11259.gif


title: Infection 6 RRVb 1h vs mocka 1h

description:
Simple annotation: Rotavirus, Infection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15678.gif

source_name: mocka 1h

tag: mocka 1h


title: 139-96_LCLC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-10/10952.gif


title: 198-96_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7793.gif


title: 319-00MT2_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/8739.gif


title: 12-00_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7821.gif


title: 246-97_SCC_p

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/8406.gif


title: 42-95_SCC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11671.gif


title: 265-98_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11059.gif


title: 161-96_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13091.gif


title: 184-96_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/5693.gif


title: 69-96_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/5719.gif


title: 59-96_SCC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs//7168.gif


title: 157-96_SCC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/5720.gif


title: 165-96_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11483.gif


title: 185-96_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12827.gif


title: 232-97_node

description:
Simple annotation: Lymph node metastasis, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3959.gif

source_name: CRD reference

tag: CRD reference


title: 246-97_SCC_c

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/8438.gif


title: 207-97_SCLC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12973.gif


title: 181-96_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11490.gif


title: 306-99_node

description:
Simple annotation: Lymph node metastasis, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3499.gif


title: 314-99_normal

description:
Simple annotation: Normal tissue, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3733.gif


title: 248-97_LCLC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3498.gif


title: 220-97_SCC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3736.gif


title: 218-97_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/8837.gif


title: 6-00_LCLC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11231.gif


title: 187-96_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12839.gif


title: 184-96_node

description:
Simple annotation: Lymph node metastasis, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/8439.gif


title: 306-99_normal

description:
Simple annotation: Normal tissue, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3496.gif


title: 315-99_normal

description:
Simple annotation: Normal tissue, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs//3741.gif


title: 3-00_SCC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-04/4046.gif


title: 314-99_SCLC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9769.gif


title: 232-97_SCC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3504.gif


title: 234-97_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11581.gif


title: fetal_lung

description:
Simple annotation: Normal tissue, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3720.gif


title: 191-96_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3497.gif


title: 226-97_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3506.gif


title: 237-97_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3509.gif


title: 245-97_node

description:
Simple annotation: Lymph node metastasis, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-10/10569.gif


title: 219-97_SCC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3503.gif


title: 222-97_normal

description:
Simple annotation: Normal tissue, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3502.gif


title: 222-97_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3505.gif


title: 320-00_Adeno_p

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10035.gif


title: 306-99_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3501.gif


title: 315-99_SCLC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/5577.gif


title: 320-00_Adeno_c

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10036.gif


title: 223-97_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11737.gif


title: RAP1C IP, S288C, OD= 0.6, Experiment 5

status: Public on Sep 24 2005

description:
Simple annotation: Chromatin IP, RAP1
Image: http://smd.stanford.edu/MicroArray/gifs/1999-12/1321.gif

source_name: Sonicated Genomic DNA, Amplified

tag: Sonicated Genomic DNA, Amplified

source_name: IP-Associated DNA, Amplified

tag: IP-Associated DNA, Amplified


title: 219-97_normal

description:
Simple annotation: Normal tissue, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3507.gif


title: 147-96_Adeno

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11742.gif


title: dun1- + 0.02% MMs - 30 min

description:
Simple annotation: DNA damage, MMS
Image: http://smd.stanford.edu/MicroArray/gifs/1999-10/8526.gif

source_name: time = 0 min

tag: time = 0 min

source_name: time = 30 min

tag: time = 30 min


title: DES459 (mec1-) + 0.02% MMS - 5 min

description:
Simple annotation: DNA damage, MMS
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/6362.gif

source_name: time = 5 min

tag: time = 5 min


title: JMV-1-SA1-10254-1-1-ME-1-RML_Signal

status: Public on Sep 26 2005

city: Hamilton

first: Dan

last: Sturdevant

state: MT

address: 903 S 4th street

department: NIAID

institute: NIH

description:
To measure S. aureus gene expression during growth phase and/or S. aureus–PMN interaction.
This sample is also known as JMV-1-SA1-10254-1-1-ME-1-RML_Signal

organism: Staphylococcus aureus

source_name: Sa and PMN interaction


title: dun1- + 0.02% MMS - 120 min

description:
Simple annotation: DNA damage, MMS
Image: http://smd.stanford.edu/MicroArray/gifs/1999-10/8521.gif

source_name: time = 120 min

tag: time = 120 min


title: 220-97_node

description:
Simple annotation: Lymph node metastasis, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3953.gif


title: DES460 + 0.02% MMS - 5 min

description:
Simple annotation: DNA damage, MMS
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/6344.gif


title: RAP1C IP, S288C, OD= 0.6, Experiment 6

description:
Simple annotation: Chromatin IP, RAP1
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3728.gif

source_name: Sonicated s288C Genomic DNA, Amplified 03-20-00

source_name: IP-Enriched DNA, Amplified

tag: IP-Enriched DNA, Amplified


title: SIR2C IP, JRY4013, OD= 0.6, SIR Experiment 4

description:
Simple annotation: Chromatin IP, SIR Proteins
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/6424.gif

tag: Sonicated s288C Genomic DNA, Amplified 03-20-00


title: 245-97_SCC

description:
Simple annotation: Primary tumor, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2000-10/10570.gif


title: dun1- + 0.02% MMS - 90 min

description:
Simple annotation: DNA damage, MMS
Image: http://smd.stanford.edu/MicroArray/gifs/1999-10/8528.gif

source_name: time = 90 min

tag: time = 90 min


title: DES459 (mec1-) + 0.02% MMS - 90 min

description:
Simple annotation: DNA damage, MMS
Image: http://smd.stanford.edu/MicroArray/gifs/1999-10/8524.gif


title: Mock IP(No Ab), S288C, OD= 0.6, RAP1 Experiment 8

description:
Simple annotation: Chromatin IP, IP Controls
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3729.gif