title: fetal lung fibroblast #1, asynchronous

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14089.gif

source_name: fetal lung fibroblast #1, asynchronous

tag: fetal lung fibroblast #1, asynchronous


title: abd skin fibroblast (1.4AF), asynch

status: Public on Nov 03 2005

type: RNA

city: Stanford

last: Stanford Microarray Database

state: CA

address: 300 Pasteur Drive

department: Stanford University, School of Medicine

country: USA

institute: Stanford Microarray Database (SMD)

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-02/25638.gif

data_processing: VALUE is Log (base 2) of the ratio of the median of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

molecule: total RNA

organism: Homo sapiens

source_name: CRF

tag: CRF

source_name: abd skin fibroblast (1.4AF), asynch

tag: abd skin fibroblast (1.4AF), asynch


title: gum fibroblast #2, asynchronous l

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16876.gif

source_name: common reference

tag: common reference

source_name: gum fibroblast (BLS5), asynchronous

tag: gum fibroblast (BLS5), asynchronous


title: fetal lung fibroblast #2 , asynch repeat l

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16878.gif

source_name: fetal lung fibroblast #2 (FL2) asynchronous repeat


title: abd skin fibroblast , asynchronous l

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16877.gif

source_name: abd skin fibroblast (BLS3), asynchronous


title: fetal lung fibroblast #2, asynchronous I

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16311.gif

source_name: fetal lung fibroblast #2, asynchronous

tag: fetal lung fibroblast #2, asynchronous


title: mid back fibroblast (1.3F), serum starved

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-02/25637.gif


title: GC (AGS cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-08/19067.gif

source_name: CRG

tag: CRG

source_name: GC (AGS cells)

tag: GC (AGS cells)


title: fetal buttock-thigh fibroblast #3, serum starved

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/23729.gif

source_name: fetal buttock-thigh fibroblast (FS3), serum starved


title: fetal lung fibroblast #2, serum starved

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16659.gif

source_name: fetal lung fibroblast #2, serum starved

tag: fetal lung fibroblast #2, serum starved


title: gum fibroblast, asynchronous l

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16875.gif

source_name: gum fibroblast (BLS4), asynchronous

tag: gum fibroblast (BLS4), asynchronous


title: mid back fibroblast (1.3F), asynch

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-02/25506.gif

source_name: mid back fibroblast (1.3F), asynch

tag: mid back fibroblast (1.3F), asynch


title: GC (HCT15cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-10/20978.gif

source_name: GC (HCT15 cells)

tag: GC (HCT15 cells)


title: foreskin fibroblast #4, serum starved'

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-02/25505.gif

source_name: foreskin fibroblast #4 (BLS11), serum starved


title: foreskin fibroblast #3, asynchronous

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-02/24869.gif

source_name: foreskin fibroblast #3 (BLS10), asynch

tag: foreskin fibroblast #3 (BLS10), asynch


title: GC (SW620 cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/20206.gif

source_name: GC (SW620 cells)

tag: GC (SW620 cells)


title: GC (HUVEC2)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-08/18757.gif

source_name: HUVEC, plastic 4 hrs

tag: HUVEC, plastic 4 hrs


title: GC (HUVEC1)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-08/18756.gif

source_name: HUVEC, plastic 24 hrs

tag: HUVEC, plastic 24 hrs


title: GC (HCT116 cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/20209.gif

source_name: GC (HCT116 cells)

tag: GC (HCT116 cells)


title: toe fibroblast repeat, serum starved

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26626.gif

source_name: CRF

source_name: toe fibroblast repeat, serum starved

tag: toe fibroblast repeat, serum starved


title: GC (N87 cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-08/19065.gif

source_name: GC (N87 cells)

tag: GC (N87 cells)


title: foreskin fibroblast #4, asynch'

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-02/25504.gif

tag: CRF

source_name: foreskin fibroblast #4 (BLS11), asynch

tag: foreskin fibroblast #4 (BLS11), asynch


title: fetal buttock-thigh fibroblast #1, serum starved

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26623.gif


title: fetal buttock-thigh fibroblast #2, serum starved

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26625.gif


title: abd skin fibroblast (1.4AF), serum starved

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-02/25639.gif


title: GC (PAM82 cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-08/19212.gif

source_name: CRG

source_name: GC (PAM82 cells)

tag: GC (PAM82 cells)


title: GC (MKN45 cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/20212.gif

source_name: GC (MKN45 cells)

tag: GC (MKN45 cells)


title: GC (SNU1 cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16558.gif

tag: CRG

source_name: SNU1 cells

tag: SNU1 cells


title: GC (HFI-1 cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-08/19049.gif

source_name: GC (HFI-1 cells)

tag: GC (HFI-1 cells)


title: fetal buttock-thigh fibroblast #1, asynch

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26622.gif


title: scalp fibroblast (1.1F) asynch

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-02/24868.gif

source_name: scalp fibroblast (1.1F), asynch

tag: scalp fibroblast (1.1F), asynch


title: GC (Jurkat cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-08/19054.gif

source_name: GC (Jurkat cells)

tag: GC (Jurkat cells)


title: fetal buttock-thigh fibroblast #2, asynch

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26624.gif


title: GC (NB4 + RA)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-08/19059.gif

source_name: GC (NB4 + RA)

tag: GC (NB4 + RA)


title: toe fibroblast repeat, asynchronous

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2001-12/23625.gif

source_name: toe fibroblast (BLS2), asynch repeat

tag: toe fibroblast (BLS2), asynch repeat


title: GC (RF1 cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15909.gif

source_name: RF1 cells

tag: RF1 cells


title: GC (NHF)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/19828.gif

source_name: NHF(+)

tag: NHF(+)


title: GC (BGC823 cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14828.gif

source_name: BGC823 cells

tag: BGC823 cells


title: foreskin fibroblast #1, serum starved'

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-02/25503.gif

source_name: foreskin fibroblast #1 (BLS8), serum starved


title: GC (U937 + PMA)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-08/19063.gif

source_name: GC (U937 + PMA)

tag: GC (U937 + PMA)


title: GC (LAM cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-08/19051.gif

source_name: GC (LAM cells)

tag: GC (LAM cells)


title: Monkey adrenal gland 7 AM

status: Public on Nov 02 2005

city: Beaverton

first: Dario

last: Lemos

state: OR

institute: Oregon National Primate Research Center

description:
biosource: ovariectomized rhesus macaque
gender: female
age: 12 years

Treatment: animals were maintained in individual cages, in rooms of 8 animals, under 12h light:12h dark regime at constant temperature, during 3 months. Fed normal chow, 2 meals a day.
The animals were fastened 12h prior to necropsy. Necrospy was performed according to NIH Guide for the Care and Use of Laboratory Animals.
Adrenal glands were extracted and left adrenal gland was immediately frozen in liquid nitrogen.
Total RNA was extracted using RNeasy columns (Qiagen).
Microarray assays were performed in the Affymetrix Microarray Core, a unit of the OHSU Gene Microarray Shared Resource using procedures adapted from the Affymetrix GeneChip Expression Analysis Technical Manual, rev.3
Target labeling. Messenger RNA is amplified and labeled from 4 mg of total RNA in two steps. In the first step, mRNA is converted to double-stranded cDNA using Superscript Reverse Transcriptase (Invitrogen) and an oligo-dT primer linked to a T7 RNA polymerase binding site sequence (Integrated DNA Technologies).  In the second step, amplified and labeled cRNA (the target) is produced in an in vitro transcription reaction using T7 RNA polymerase and biotin-UTP and -CTP (Enzo Diagnostics, Inc.). Following removal of free nucleotides, target yield is measured by UV260 absorbance.
Target quality assessment.  Approximately 200 ng of each sample cRNA target along with a control cRNA target is analyzed on the RNA 6000 LabChip using the 2100 Bioanalyzer (Agilent Technologies).  The target quality is determined based on cRNA yield and size distribution produced from the in vitro synthesis reaction.  Samples that fail quality control are discarded or relabeled.

Array hybridization and processing.  Labeled target is fragmented at 95o C in the presence of high magnesium concentration.  The fragmented material is combined with biotinylated hybridization control oligomer and biotinylated control cRNAs for BioB, BioC, BioD and CreX (Affymetrix) in hybridization buffer.  Ten mg of target is hybridized with the GeneChip (insert array name) array (Affymetrix) overnight, followed by washing, staining with streptavidin-phycoerythrin (Molecular Probes), signal amplification with biotinylated anti-streptavidin antibody (Vector Labs), and a final staining step on the Fluidics Station 400 (Affymetrix). The distribution of fluorescent material on the processed array is determined using the Agilent GeneArray laser scanner (Affymetrix).  Image inspection is performed manually immediately following each scan.

Data analysis.  The array image scan is processed with Affymetrix Microarray Suite, version 5.0 (MAS 5.0) software. The GeneChip expression arrays contain control probe sets for both spiked and endogenous RNA transcripts (e.g., BioB, BioC, BioD, CreX and species-specific actin and GAPDH).  Following image processing and absolute analysis of the array pattern with MAS, six values are examined to assess overall assay performance: background, noise, average Signal, % Present, ratio of Signal values for probe sets representing the 5’ and 3’ ends of actin and GAPDH transcripts, and total Signal for probe sets for BioC, BioD and CreX.
Following the initial analysis, the absolute analyses were rerun using global scaling to an average target intensity of 325.  The scaling allows for the direct comparison of hybridization values from the different targets analyzed in this project (and with any additional GeneChip sample assays you run using the same array type).  For each analysis, scaled or unscaled, the parameters 1 and 2 are set to 0.1 and 0.15 respectively.  These parameters set the point at which a probe set is called present (P), marginal (M), or   undetectable (A).  This call is based on the Detection p-value of the probe set.

organism: Macaca mulatta

source_name: rhesus macaque adrenal gland


title: GC (MOLT 4 cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-08/19056.gif

source_name: GC (MOLT 4 cells)

tag: GC (MOLT 4 cells)


title: Monkey adrenal gland 7 PM

description:
biosource: ovariectomized rhesus macaque
gender: female
age: 7 years 82 days

Treatment: animals were maintained in individual cages, in rooms of 8 animals, under 12h light:12h dark regime at constant temperature, during 3 months. Fed normal chow, 2 meals a day.
The animals were fastened 12h prior to necropsy. Necrospy was performed according to NIH Guide for the Care and Use of Laboratory Animals.
Adrenal glands were extracted and left adrenal gland was immediately frozen in liquid nitrogen.
Total RNA was extracted using RNeasy columns (Qiagen).
Microarray assays were performed in the Affymetrix Microarray Core, a unit of the OHSU Gene Microarray Shared Resource using procedures adapted from the Affymetrix GeneChip Expression Analysis Technical Manual, rev.3
Target labeling. Messenger RNA is amplified and labeled from 4 mg of total RNA in two steps. In the first step, mRNA is converted to double-stranded cDNA using Superscript Reverse Transcriptase (Invitrogen) and an oligo-dT primer linked to a T7 RNA polymerase binding site sequence (Integrated DNA Technologies).  In the second step, amplified and labeled cRNA (the target) is produced in an in vitro transcription reaction using T7 RNA polymerase and biotin-UTP and -CTP (Enzo Diagnostics, Inc.). Following removal of free nucleotides, target yield is measured by UV260 absorbance.
Target quality assessment.  Approximately 200 ng of each sample cRNA target along with a control cRNA target is analyzed on the RNA 6000 LabChip using the 2100 Bioanalyzer (Agilent Technologies).  The target quality is determined based on cRNA yield and size distribution produced from the in vitro synthesis reaction.  Samples that fail quality control are discarded or relabeled.

Array hybridization and processing.  Labeled target is fragmented at 95o C in the presence of high magnesium concentration.  The fragmented material is combined with biotinylated hybridization control oligomer and biotinylated control cRNAs for BioB, BioC, BioD and CreX (Affymetrix) in hybridization buffer.  Ten mg of target is hybridized with the GeneChip (insert array name) array (Affymetrix) overnight, followed by washing, staining with streptavidin-phycoerythrin (Molecular Probes), signal amplification with biotinylated anti-streptavidin antibody (Vector Labs), and a final staining step on the Fluidics Station 400 (Affymetrix). The distribution of fluorescent material on the processed array is determined using the Agilent GeneArray laser scanner (Affymetrix).  Image inspection is performed manually immediately following each scan.

Data analysis.  The array image scan is processed with Affymetrix Microarray Suite, version 5.0 (MAS 5.0) software. The GeneChip expression arrays contain control probe sets for both spiked and endogenous RNA transcripts (e.g., BioB, BioC, BioD, CreX and species-specific actin and GAPDH).  Following image processing and absolute analysis of the array pattern with MAS, six values are examined to assess overall assay performance: background, noise, average Signal, % Present, ratio of Signal values for probe sets representing the 5’ and 3’ ends of actin and GAPDH transcripts, and total Signal for probe sets for BioC, BioD and CreX.
Following the initial analysis, the absolute analyses were rerun using global scaling to an average target intensity of 325.  The scaling allows for the direct comparison of hybridization values from the different targets analyzed in this project (and with any additional GeneChip sample assays you run using the same array type).  For each analysis, scaled or unscaled, the parameters 1 and 2 are set to 0.1 and 0.15 respectively.  These parameters set the point at which a probe set is called present (P), marginal (M), or   undetectable (A).  This call is based on the Detection p-value of the probe set.


title: GC (Bxpc3 cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-07/18177.gif

source_name: CRG

source_name: Bxpc3 cells

tag: Bxpc3 cells


title: thigh fibroblast (1.5F) asynch

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26115.gif

source_name: CRF

tag: CRF

source_name: thigh fibroblast (1.5F) asynch

tag: thigh fibroblast (1.5F) asynch


title: thigh fibroblast (1.5F) serum starved

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26116.gif

source_name: thigh fibroblast (1.5F), serum starved

tag: thigh fibroblast (1.5F), serum starved


title: Monkey adrenal gland 11 PM

description:
biosource: ovariectomized rhesus macaque
gender: female
age: 8 years 70 days

Treatment: animals were maintained in individual cages, in rooms of 8 animals, under 12h light:12h dark regime at constant temperature, during 3 months. Fed normal chow, 2 meals a day.
The animals were fastened 12h prior to necropsy. Necrospy was performed according to NIH Guide for the Care and Use of Laboratory Animals.
Adrenal glands were extracted and left adrenal gland was immediately frozen in liquid nitrogen.
Total RNA was extracted using RNeasy columns (Qiagen).
Microarray assays were performed in the Affymetrix Microarray Core, a unit of the OHSU Gene Microarray Shared Resource using procedures adapted from the Affymetrix GeneChip Expression Analysis Technical Manual, rev.3
Target labeling. Messenger RNA is amplified and labeled from 4 mg of total RNA in two steps. In the first step, mRNA is converted to double-stranded cDNA using Superscript Reverse Transcriptase (Invitrogen) and an oligo-dT primer linked to a T7 RNA polymerase binding site sequence (Integrated DNA Technologies).  In the second step, amplified and labeled cRNA (the target) is produced in an in vitro transcription reaction using T7 RNA polymerase and biotin-UTP and -CTP (Enzo Diagnostics, Inc.). Following removal of free nucleotides, target yield is measured by UV260 absorbance.
Target quality assessment.  Approximately 200 ng of each sample cRNA target along with a control cRNA target is analyzed on the RNA 6000 LabChip using the 2100 Bioanalyzer (Agilent Technologies).  The target quality is determined based on cRNA yield and size distribution produced from the in vitro synthesis reaction.  Samples that fail quality control are discarded or relabeled.

Array hybridization and processing.  Labeled target is fragmented at 95o C in the presence of high magnesium concentration.  The fragmented material is combined with biotinylated hybridization control oligomer and biotinylated control cRNAs for BioB, BioC, BioD and CreX (Affymetrix) in hybridization buffer.  Ten mg of target is hybridized with the GeneChip (insert array name) array (Affymetrix) overnight, followed by washing, staining with streptavidin-phycoerythrin (Molecular Probes), signal amplification with biotinylated anti-streptavidin antibody (Vector Labs), and a final staining step on the Fluidics Station 400 (Affymetrix). The distribution of fluorescent material on the processed array is determined using the Agilent GeneArray laser scanner (Affymetrix).  Image inspection is performed manually immediately following each scan.

Data analysis.  The array image scan is processed with Affymetrix Microarray Suite, version 5.0 (MAS 5.0) software. The GeneChip expression arrays contain control probe sets for both spiked and endogenous RNA transcripts (e.g., BioB, BioC, BioD, CreX and species-specific actin and GAPDH).  Following image processing and absolute analysis of the array pattern with MAS, six values are examined to assess overall assay performance: background, noise, average Signal, % Present, ratio of Signal values for probe sets representing the 5’ and 3’ ends of actin and GAPDH transcripts, and total Signal for probe sets for BioC, BioD and CreX.
Following the initial analysis, the absolute analyses were rerun using global scaling to an average target intensity of 325.  The scaling allows for the direct comparison of hybridization values from the different targets analyzed in this project (and with any additional GeneChip sample assays you run using the same array type).  For each analysis, scaled or unscaled, the parameters 1 and 2 are set to 0.1 and 0.15 respectively.  These parameters set the point at which a probe set is called present (P), marginal (M), or   undetectable (A).  This call is based on the Detection p-value of the probe set.


title: fetal buttock-thigh fibroblast #3, asynchronous

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2001-12/23626.gif

source_name: fetal buttock-thigh fibroblast (FS3), asynch


title: Monkey adrenal gland 3 AM


title: foreskin fibroblast #2, asynch

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24085.gif

source_name: foreskin fibroblast #2 (BLS9), asynch

tag: foreskin fibroblast #2 (BLS9), asynch


title: GC (NUGC 3 cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-08/19048.gif

tag: CRG

source_name: GC (NUGC 3 cells)

tag: GC (NUGC 3 cells)


title: abd skin fibroblast (BLS3), asynch

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26119.gif

source_name: abd skin fibroblast (BLS3), asynch

tag: abd skin fibroblast (BLS3), asynch


title: GC (RF48 cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/16260.gif

source_name: RF48 cells

tag: RF48 cells


title: GC (SNU5 cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14720.gif

source_name: SNU5 cells vs CRG

tag: SNU5 cells vs CRG


title: foreskin fibroblast #3, serum starved'

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24087.gif

source_name: foreskin fibroblast #3 (BLS10), serum starved


title: GC (SNU 16 cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15413.gif

source_name: SNU 16 cells

tag: SNU 16 cells


title: GC (KATO 3 cells)

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-08/19047.gif

source_name: GC (KATO 3 cells)

tag: GC (KATO 3 cells)


title: GC (MCF7 cells )

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/19776.gif

source_name: GC (MCF7 cells )

tag: GC (MCF7 cells )


title: abd skin fibroblast (1.4BF), serum starved

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26118.gif


title: Liver (SF36)

status: Public on Oct 25 2005

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12224.gif

data_processing: LOG_RAT2N_MEDIAN is Log (base 2) of the ratio of the median of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

source_name: Liver Reference 1

tag: Liver Reference 1

source_name: Liver (SF36)

tag: Liver (SF36)


title: foreskin fibroblast #1, asynchronous

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/23730.gif

source_name: foreskin fibroblast #1 (BLS8), asynch

tag: foreskin fibroblast #1 (BLS8), asynch


title: GC (colo205 cells )

description:
Simple annotation: Cell-line, Stomach cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2001-09/19777.gif

source_name: CRG

source_name: GC (colo205 cells )

tag: GC (colo205 cells )


title: Monkey adrenal gland 11 AM

description:
biosource: ovariectomized rhesus macaque
gender: female
age: 10 years 37 days

Treatment: animals were maintained in individual cages, in rooms of 8 animals, under 12h light:12h dark regime at constant temperature, during 3 months. Fed normal chow, 2 meals a day.
The animals were fastened 12h prior to necropsy. Necrospy was performed according to NIH Guide for the Care and Use of Laboratory Animals.
Adrenal glands were extracted and left adrenal gland was immediately frozen in liquid nitrogen.
Total RNA was extracted using RNeasy columns (Qiagen).
Microarray assays were performed in the Affymetrix Microarray Core, a unit of the OHSU Gene Microarray Shared Resource using procedures adapted from the Affymetrix GeneChip Expression Analysis Technical Manual, rev.3
Target labeling. Messenger RNA is amplified and labeled from 4 mg of total RNA in two steps. In the first step, mRNA is converted to double-stranded cDNA using Superscript Reverse Transcriptase (Invitrogen) and an oligo-dT primer linked to a T7 RNA polymerase binding site sequence (Integrated DNA Technologies).  In the second step, amplified and labeled cRNA (the target) is produced in an in vitro transcription reaction using T7 RNA polymerase and biotin-UTP and -CTP (Enzo Diagnostics, Inc.). Following removal of free nucleotides, target yield is measured by UV260 absorbance.
Target quality assessment.  Approximately 200 ng of each sample cRNA target along with a control cRNA target is analyzed on the RNA 6000 LabChip using the 2100 Bioanalyzer (Agilent Technologies).  The target quality is determined based on cRNA yield and size distribution produced from the in vitro synthesis reaction.  Samples that fail quality control are discarded or relabeled.

Array hybridization and processing.  Labeled target is fragmented at 95o C in the presence of high magnesium concentration.  The fragmented material is combined with biotinylated hybridization control oligomer and biotinylated control cRNAs for BioB, BioC, BioD and CreX (Affymetrix) in hybridization buffer.  Ten mg of target is hybridized with the GeneChip (insert array name) array (Affymetrix) overnight, followed by washing, staining with streptavidin-phycoerythrin (Molecular Probes), signal amplification with biotinylated anti-streptavidin antibody (Vector Labs), and a final staining step on the Fluidics Station 400 (Affymetrix). The distribution of fluorescent material on the processed array is determined using the Agilent GeneArray laser scanner (Affymetrix).  Image inspection is performed manually immediately following each scan.

Data analysis.  The array image scan is processed with Affymetrix Microarray Suite, version 5.0 (MAS 5.0) software. The GeneChip expression arrays contain control probe sets for both spiked and endogenous RNA transcripts (e.g., BioB, BioC, BioD, CreX and species-specific actin and GAPDH).  Following image processing and absolute analysis of the array pattern with MAS, six values are examined to assess overall assay performance: background, noise, average Signal, % Present, ratio of Signal values for probe sets representing the 5’ and 3’ ends of actin and GAPDH transcripts, and total Signal for probe sets for BioC, BioD and CreX.
Following the initial analysis, the absolute analyses were rerun using global scaling to an average target intensity of 325.  The scaling allows for the direct comparison of hybridization values from the different targets analyzed in this project (and with any additional GeneChip sample assays you run using the same array type).  For each analysis, scaled or unscaled, the parameters 1 and 2 are set to 0.1 and 0.15 respectively.  These parameters set the point at which a probe set is called present (P), marginal (M), or   undetectable (A).  This call is based on the Detection p-value of the probe set.

source_name: rhesus macaque adrenal gland


title: Monkey adrenal gland 3 PM

description:
biosource: ovariectomized rhesus macaque
gender: female
age: 8 years 106 days

Treatment: animals were maintained in individual cages, in rooms of 8 animals, under 12h light:12h dark regime at constant temperature, during 3 months. Fed normal chow, 2 meals a day.
The animals were fastened 12h prior to necropsy. Necrospy was performed according to NIH Guide for the Care and Use of Laboratory Animals.
Adrenal glands were extracted and left adrenal gland was immediately frozen in liquid nitrogen.
Total RNA was extracted using RNeasy columns (Qiagen).
Microarray assays were performed in the Affymetrix Microarray Core, a unit of the OHSU Gene Microarray Shared Resource using procedures adapted from the Affymetrix GeneChip Expression Analysis Technical Manual, rev.3
Target labeling. Messenger RNA is amplified and labeled from 4 mg of total RNA in two steps. In the first step, mRNA is converted to double-stranded cDNA using Superscript Reverse Transcriptase (Invitrogen) and an oligo-dT primer linked to a T7 RNA polymerase binding site sequence (Integrated DNA Technologies).  In the second step, amplified and labeled cRNA (the target) is produced in an in vitro transcription reaction using T7 RNA polymerase and biotin-UTP and -CTP (Enzo Diagnostics, Inc.). Following removal of free nucleotides, target yield is measured by UV260 absorbance.
Target quality assessment.  Approximately 200 ng of each sample cRNA target along with a control cRNA target is analyzed on the RNA 6000 LabChip using the 2100 Bioanalyzer (Agilent Technologies).  The target quality is determined based on cRNA yield and size distribution produced from the in vitro synthesis reaction.  Samples that fail quality control are discarded or relabeled.

Array hybridization and processing.  Labeled target is fragmented at 95o C in the presence of high magnesium concentration.  The fragmented material is combined with biotinylated hybridization control oligomer and biotinylated control cRNAs for BioB, BioC, BioD and CreX (Affymetrix) in hybridization buffer.  Ten mg of target is hybridized with the GeneChip (insert array name) array (Affymetrix) overnight, followed by washing, staining with streptavidin-phycoerythrin (Molecular Probes), signal amplification with biotinylated anti-streptavidin antibody (Vector Labs), and a final staining step on the Fluidics Station 400 (Affymetrix). The distribution of fluorescent material on the processed array is determined using the Agilent GeneArray laser scanner (Affymetrix).  Image inspection is performed manually immediately following each scan.

Data analysis.  The array image scan is processed with Affymetrix Microarray Suite, version 5.0 (MAS 5.0) software. The GeneChip expression arrays contain control probe sets for both spiked and endogenous RNA transcripts (e.g., BioB, BioC, BioD, CreX and species-specific actin and GAPDH).  Following image processing and absolute analysis of the array pattern with MAS, six values are examined to assess overall assay performance: background, noise, average Signal, % Present, ratio of Signal values for probe sets representing the 5’ and 3’ ends of actin and GAPDH transcripts, and total Signal for probe sets for BioC, BioD and CreX.
Following the initial analysis, the absolute analyses were rerun using global scaling to an average target intensity of 325.  The scaling allows for the direct comparison of hybridization values from the different targets analyzed in this project (and with any additional GeneChip sample assays you run using the same array type).  For each analysis, scaled or unscaled, the parameters 1 and 2 are set to 0.1 and 0.15 respectively.  These parameters set the point at which a probe set is called present (P), marginal (M), or   undetectable (A).  This call is based on the Detection p-value of the probe set.


title: abd skin fibroblast (1.4BF), asynch

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26117.gif

source_name: CRF

source_name: abd skin fibroblast (1.4BF), asynch

tag: abd skin fibroblast (1.4BF), asynch


title: foreskin fibroblast #2, serum starved

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24086.gif

tag: CRF

source_name: foreskin fibroblast #2 (BLS9), serum starved


title: Endometrial Stromal Sarcoma (SF26)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12405.gif

source_name: Sarcoma (SF26)

tag: Sarcoma (SF26)


title: Liver (HBV+, HK42)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9872.gif

source_name: Liver (HBV+, HK42)

tag: Liver (HBV+, HK42)


title: HCC (HBV+, HK66, T4)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9928.gif

source_name: HCC (HBV+, HK66, T4)

tag: HCC (HBV+, HK66, T4)


title: HCC (HBV+, HK67, T2)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9932.gif

source_name: HCC (HBV+, HK67, T2)

tag: HCC (HBV+, HK67, T2)


title: HCC (HBV+, HK66, T5)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9929.gif

source_name: HCC (HBV+, HK66, T5)

tag: HCC (HBV+, HK66, T5)


title: Liver (SF6)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12223.gif

source_name: Liver (SF6)

tag: Liver (SF6)


title: Liver (SF10)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11479.gif

source_name: Liver (SF10)

tag: Liver (SF10)


title: abd skin fibroblast (BLS3), serum starved

description:
Simple annotation: Development, Fibroblasts
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26120.gif


title: HCC (HBV+, HK67, T3)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9931.gif

source_name: HCC (HBV+, HK67, T3)

tag: HCC (HBV+, HK67, T3)


title: HCC (HBV+, HK66, T3)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9927.gif

source_name: Liver Reference 1

source_name: HCC (HBV+, HK66, T3)

tag: HCC (HBV+, HK66, T3)


title: HCC (HBV+, HK67, T1)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9933.gif

source_name: HCC (HBV+, HK67, T1)

tag: HCC (HBV+, HK67, T1)


title: HCC (HBV+, HK66, T2)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9926.gif

source_name: HCC (HBV+, HK66, T2)

tag: HCC (HBV+, HK66, T2)


title: HCC (HBV+, SF34, 2)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9920.gif

tag: Liver Reference 1

source_name: HCC (HBV+, SF34, 2)

tag: HCC (HBV+, SF34, 2)


title: HCC (HBV+, HK65, T1)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10020.gif

source_name: HCC (HBV+, HK65, T1)

tag: HCC (HBV+, HK65, T1)


title: HCC (HBV+, HK66, T1)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9925.gif

source_name: HCC (HBV+, HK66, T1)

tag: HCC (HBV+, HK66, T1)


title: HCC (HBV+, SF34, 1)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9915.gif

source_name: HCC (HBV+, SF34, 1)

tag: HCC (HBV+, SF34, 1)


title: HCC (HBV+, HK50)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9881.gif

source_name: HCC (HBV+, HK50)

tag: HCC (HBV+, HK50)


title: HCC (HBV+, HK65, T4)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9982.gif

source_name: HCC (HBV+, HK65, T4)

tag: HCC (HBV+, HK65, T4)


title: HCC (HBV+, SF34, 3)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9923.gif

source_name: HCC (HBV+, SF34, 3)

tag: HCC (HBV+, SF34, 3)


title: Liver (HBV+, SF21)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12412.gif

source_name: Liver (HBV+, SF21)

tag: Liver (HBV+, SF21)


title: Liver (HBV+, SF35)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9983.gif

source_name: Liver (HBV+, SF35)

tag: Liver (HBV+, SF35)


title: Liver (HBV+, CH2)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12416.gif

source_name: Liver (HBV+, CH2)

tag: Liver (HBV+, CH2)


title: Liver (HBV+, HK85)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10414.gif

source_name: Liver (HBV+, HK85)

tag: Liver (HBV+, HK85)


title: HCC (HBV+, HK64, T7)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9981.gif

source_name: HCC (HBV+, HK64, T7)

tag: HCC (HBV+, HK64, T7)


title: HCC (HBV+, SF35, 1)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9984.gif

source_name: HCC (HBV+, SF35, 1)

tag: HCC (HBV+, SF35, 1)


title: Liver (HBV+, SF22)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12414.gif

source_name: Liver Reference 1

source_name: Liver (HBV+, SF22)

tag: Liver (HBV+, SF22)


title: Liver (HK41)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9868.gif

source_name: Liver (HBV+, HK41)

tag: Liver (HBV+, HK41)


title: Liver (HBV+, HK64)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10021.gif

source_name: Liver (HBV+, HK64)

tag: Liver (HBV+, HK64)


title: Adenoma (HK69)

description:
Simple annotation: Adenoma, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10029.gif

tag: Liver Reference 1

source_name: Adenoma (HK69)

tag: Adenoma (HK69)


title: HCC (HBV+, HK65, T2)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10019.gif

source_name: HCC (HBV+, HK65, T2)

tag: HCC (HBV+, HK65, T2)


title: Adenoma (HK73)

description:
Simple annotation: Adenoma, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10018.gif

source_name: Adenoma (HK73)

tag: Adenoma (HK73)


title: Liver (HBV+, HK29)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9903.gif

source_name: Liver (HBV+, HK29)

tag: Liver (HBV+, HK29)


title: HCC (HBV+, HK64, T5)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9977.gif

source_name: HCC (HBV+, HK64, T5)

tag: HCC (HBV+, HK64, T5)


title: FNH (HK72)

description:
Simple annotation: FNH, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10017.gif

source_name: FNH (HK72)

tag: FNH (HK72)


title: HCC (HBV+, HK64, T6)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9979.gif

source_name: HCC (HBV+, HK64, T6)

tag: HCC (HBV+, HK64, T6)


title: Liver (HBV+, SF34)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9909.gif

source_name: Liver (HBV+, SF34)

tag: Liver (HBV+, SF34)


title: Liver (HBV+, SF17)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12408.gif

source_name: Liver (HBV+, SF17)

tag: Liver (HBV+, SF17)


title: FNH (HK70)

description:
Simple annotation: FNH, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10015.gif

source_name: FNH (HK70)

tag: FNH (HK70)


title: HCC (HBV+, HK64, T4)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9975.gif

source_name: HCC (HBV+, HK64, T4)

tag: HCC (HBV+, HK64, T4)


title: Liver (HBV+, SF12)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12407.gif

source_name: Liver (HBV+, SF12)

tag: Liver (HBV+, SF12)


title: HCC (HBV+, HK64, T3)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9974.gif

source_name: HCC (HBV+, HK64, T3)

tag: HCC (HBV+, HK64, T3)


title: HCC (HBV+, HK64, T1)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9972.gif

source_name: Liver Reference 1

source_name: HCC (HBV+, HK64, T1)

tag: HCC (HBV+, HK64, T1)


title: HCC (HBV+, HK64, T2)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9973.gif

source_name: HCC (HBV+, HK64, T2)

tag: HCC (HBV+, HK64, T2)


title: HCC (HBV+, HK62, T2)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9966.gif

source_name: HCC (HBV+, HK62, T2)

tag: HCC (HBV+, HK62, T2)


title: Liver (HBV+, HK84)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11095.gif

tag: Liver Reference 1

source_name: Liver (HBV+, HK84)

tag: Liver (HBV+, HK84)


title: HCC (HBV+, HK63, T1)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9970.gif

source_name: HCC (HBV+, HK63, T1)

tag: HCC (HBV+, HK63, T1)


title: Liver (HBV+, HK63)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9969.gif

source_name: Liver (HBV+, HK63)

tag: Liver (HBV+, HK63)


title: Liver (SF16)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7771.gif

source_name: Liver (SF16)

tag: Liver (SF16)


title: HCC (HBV+, HK62, T1)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9964.gif

source_name: HCC (HBV+, HK62, T1)

tag: HCC (HBV+, HK62, T1)


title: Liver (HK23)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7553.gif

source_name: Liver (HK23)

tag: Liver (HK23)


title: Liver (SF33)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7773.gif

source_name: Liver (SF33)

tag: Liver (SF33)


title: HCC (HBV+, HK54)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9855.gif

source_name: HCC (HBV+, HK54)

tag: HCC (HBV+, HK54)


title: HCC (HBV+, HK63, T2)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9971.gif

source_name: HCC (HBV+, HK63, T2)

tag: HCC (HBV+, HK63, T2)


title: FNH (SF16)

description:
Simple annotation: FNH, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7772.gif

source_name: FNH (SF16)

tag: FNH (SF16)


title: Liver (SF4)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7702.gif

source_name: Liver (SF4)

tag: Liver (SF4)


title: Liver (HBV+, HK46)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9655.gif

source_name: Liver (HK46)

tag: Liver (HK46)


title: HCC (HBV+, HK45)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9474.gif

source_name: HCC (HBV+, HK45)

tag: HCC (HBV+, HK45)


title: HCC (HK46)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9630.gif

source_name: Liver Reference 1

source_name: HCC (HBV+, HK46)

tag: HCC (HBV+, HK46)


title: FNH (SF33)

description:
Simple annotation: FNH, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7774.gif

source_name: FNH (SF33)

tag: FNH (SF33)


title: HCC (SF4)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7705.gif

source_name: HCC (SF4)

tag: HCC (SF4)


title: HCC (HK55)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9632.gif

tag: Liver Reference 1

source_name: HCC (HBV+, HK55)

tag: HCC (HBV+, HK55)


title: Liver (HBV+, SF18)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12411.gif

source_name: Liver (HBV+, SF18)

tag: Liver (HBV+, SF18)


title: HCC (HBV+, HK58)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9636.gif

source_name: HCC (HBV+, HK58)

tag: HCC (HBV+, HK58)


title: HCC (HBV+, HK56)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9634.gif

source_name: HCC (HBV+, HK56)

tag: HCC (HBV+, HK56)


title: HCC (HBV+, SF35, 2)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9890.gif

source_name: HCC (HBV+, SF35, 2)

tag: HCC (HBV+, SF35, 2)


title: HCC (HBV+, HK44)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9471.gif

source_name: HCC (HBV+, HK44)

tag: HCC (HBV+, HK44)


title: HCC (HBV+, HK53)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9631.gif

source_name: HCC (HBV+, HK53)

tag: HCC (HBV+, HK53)


title: HCC (SF9)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7721.gif

source_name: HCC (SF9)

tag: HCC (SF9)


title: HCC (HBV+, HK49)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10013.gif

source_name: HCC (HBV+, HK49)

tag: HCC (HBV+, HK49)


title: Liver (HBV+, HK67)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9930.gif

source_name: Liver (HBV+, HK67)

tag: Liver (HBV+, HK67)


title: HCC (HBV+, HK57)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9635.gif

source_name: HCC (HBV+, HK57)

tag: HCC (HBV+, HK57)


title: WT vs lpz8 null cells in low Cu-repeat

description:
Simple annotation: Metals, Copper
Image: http://smd.stanford.edu/MicroArray/gifs/2000-02/2964.gif

organism: Saccharomyces cerevisiae

source_name: WT

tag: WT

source_name: lpz8 null cells in low Cu

tag: lpz8 null cells in low Cu


title: Liver (HBV+, HK49)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10009.gif

source_name: Liver Reference 1

source_name: Liver (HBV+, HK49)

tag: Liver (HBV+, HK49)


title: WT vs lpz8 null cells in low Cu

description:
Simple annotation: Metals, Copper
Image: http://smd.stanford.edu/MicroArray/gifs/2000-02/3022.gif


title: WT vs lpz8 null cells in high Cu

description:
Simple annotation: Metals, Copper
Image: http://smd.stanford.edu/MicroArray/gifs/2000-02/3020.gif

source_name: lpz8 null cells in high Cu

tag: lpz8 null cells in high Cu


title: Liver (SF9)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7718.gif

source_name: Liver (SF9)

tag: Liver (SF9)


title: SK-HEP-1 cells

description:
Simple annotation: Cell-line, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3147.gif

tag: Liver Reference 1

source_name: SK-HEP-2 (HTB52) cells

tag: SK-HEP-2 (HTB52) cells


title: HCC (HBV+, HK15)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12969.gif

source_name: HCC (HBV+, HK15)

tag: HCC (HBV+, HK15)


title: Liver (HBV+, HK10)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12962.gif

source_name: Liver (HBV+, HK10)

tag: Liver (HBV+, HK10)


title: Liver (HBV+, HK4)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12961.gif

source_name: Liver (HBV+, HK4)

tag: Liver (HBV+, HK4)


title: WT vs Lpz8 null cells in high Cu-repeat

description:
Simple annotation: Metals, Copper
Image: http://smd.stanford.edu/MicroArray/gifs/2000-02/2966.gif


title: HCC (HBV+, HK48)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10008.gif

source_name: HCC (HBV+, HK48)

tag: HCC (HBV+, HK48)


title: HCC (SF8)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7714.gif

source_name: HCC (SF8)

tag: HCC (SF8)


title: Liver (HBV+, HK15)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12968.gif

source_name: Liver (HBV+, HK15)

tag: Liver (HBV+, HK15)


title: HCC (HK2)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12958.gif

source_name: HCC (HK2)

tag: HCC (HK2)


title: HCC (Fibrolamellar, SF13)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12967.gif

source_name: HCC (Fibrolamellar, SF13)

tag: HCC (Fibrolamellar, SF13)


title: Liver (HBV+, HK62)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9963.gif

source_name: Liver (HBV+, HK62)

tag: Liver (HBV+, HK62)


title: Liver (HBV+, HK14)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12963.gif

source_name: Liver (HBV+, HK14)

tag: Liver (HBV+, HK14)


title: HCC (HBV+, CH2)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12956.gif

source_name: HCC (HBV+, CH2)

tag: HCC (HBV+, CH2)


title: Liver (HBV+, SF1)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12684.gif

source_name: Liver (HBV+, SF1)

tag: Liver (HBV+, SF1)


title: Liver (HBV+, HK10, S2)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3353.gif

source_name: Liver Reference 1

source_name: Unknow Tumor (HK10)

tag: Unknow Tumor (HK10)


title: Liver (HBV+, HK47)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9961.gif

source_name: Liver (HBV+, HK47)

tag: Liver (HBV+, HK47)


title: HCC (HBV+, HK4)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12966.gif

source_name: HCC (HBV+, HK4)

tag: HCC (HBV+, HK4)


title: Liver (HBV+, HK12)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13101.gif

tag: Liver Reference 1

source_name: Liver (HBV+, HK12)

tag: Liver (HBV+, HK12)


title: HCC (HBV+, HK47)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10007.gif

source_name: HCC (HBV+, HK47)

tag: HCC (HBV+, HK47)


title: HCC (HBV+, HK12)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13102.gif

source_name: HCC (HBV+, HK12)

tag: HCC (HBV+, HK12)


title: Liver (SF19)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/5157.gif

source_name: Liver (SF19)

tag: Liver (SF19)


title: Liver (HK2)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12965.gif

source_name: Liver (HK2)

tag: Liver (HK2)


title: HCC (HBV+, HK18)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13113.gif

source_name: HCC (HBV+, HK18)

tag: HCC (HBV+, HK18)


title: HCC (HBV+, HK19)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13115.gif

source_name: HCC (HBV+, HK19)

tag: HCC (HBV+, HK19)


title: Liver (HBV+, HK18)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13112.gif

source_name: Liver (HBV+, HK18)

tag: Liver (HBV+, HK18)


title: HCC (HBV+, HK11)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13100.gif

source_name: HCC (HBV+, HK11)

tag: HCC (HBV+, HK11)


title: HCC (HBV+, HK14)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12964.gif

source_name: HCC (HBV+, HK14)

tag: HCC (HBV+, HK14)


title: HCC (HBV+, SF1, 1)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12683.gif

source_name: HCC (HBV+, SF1, 1)

tag: HCC (HBV+, SF1, 1)


title: Liver (SF8)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7709.gif

source_name: Liver (SF8)

tag: Liver (SF8)


title: Liver (HBV+, HK19)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13114.gif

source_name: Liver (HBV+, HK19)

tag: Liver (HBV+, HK19)


title: HCC (HBV+, HK16)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13097.gif

source_name: Liver Reference 1

source_name: HCC (HBV+, HK16)

tag: HCC (HBV+, HK16)


title: Met. Colon Carcinoid (SF11)

description:
Simple annotation: Metastatic tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/5190.gif

source_name: Liver Reference 8

tag: Liver Reference 8

source_name: Met. Colon Carcinoid (SF11)

tag: Met. Colon Carcinoid (SF11)


title: Undifferentiated Carcinoma (HK17)

description:
Simple annotation: Metastatic tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13111.gif

tag: Liver Reference 1

source_name: Undifferentiated Carcinoma (HK17)

tag: Undifferentiated Carcinoma (HK17)


title: HCC (HBV+, SF7)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12971.gif

source_name: HCC (HBV+, SF7)

tag: HCC (HBV+, SF7)


title: HCC (HBV+, HK13)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13094.gif

source_name: HCC (HBV+, HK13)

tag: HCC (HBV+, HK13)


title: Liver (HBV+, HK16)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12544.gif

source_name: Liver (HBV+, HK16)

tag: Liver (HBV+, HK16)


title: Met. Colon Cancer (SF10)

description:
Simple annotation: Metastatic tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/5185.gif

source_name: Met. Colon Cancer (SF10)

tag: Met. Colon Cancer (SF10)


title: Liver (SF5)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/5152.gif

source_name: Liver (SF5)

tag: Liver (SF5)


title: Liver (HBV+, HK11)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13099.gif

source_name: Liver (HBV+, HK11)

tag: Liver (HBV+, HK11)


title: HCC (HBV+, HK8)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12970.gif

source_name: HCC (HBV+, HK8)

tag: HCC (HBV+, HK8)


title: HCC (HBV+, HK22)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13109.gif

source_name: HCC (HBV+, HK22)

tag: HCC (HBV+, HK22)


title: SNU398 cells

description:
Simple annotation: Cell-line, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-02/2758.gif

source_name: SNU398 (CRL2233) cells

tag: SNU398 (CRL2233) cells


title: Met. Colon Cancer (SF5)

description:
Simple annotation: Metastatic tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-05/5173.gif

source_name: Met. Colon Cancer (SF5)

tag: Met. Colon Cancer (SF5)


title: Liver (HBV+, HK22)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13108.gif

source_name: Liver (HBV+, HK22)

tag: Liver (HBV+, HK22)


title: Liver (HBV+, HK17)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13110.gif

source_name: Liver (HBV+, HK17)

tag: Liver (HBV+, HK17)


title: Liver (HBV+, HK13)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12972.gif

source_name: Liver Reference 1

source_name: Liver (HBV+, HK13)

tag: Liver (HBV+, HK13)


title: HCC (HBV+, SF12)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12676.gif

source_name: HCC (HBV+, SF12)

tag: HCC (HBV+, SF12)


title: HCC (HBV+, SF15)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12678.gif

source_name: HCC (HBV+, SF15)

tag: HCC (HBV+, SF15)


title: Liver (HCV+, SF28, 1)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12672.gif

tag: Liver Reference 1

source_name: Liver (HCV+, SF28, 1)

tag: Liver (HCV+, SF28, 1)


title: Liver (HBV+, HK9)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12674.gif

source_name: Liver (HBV+, HK9)

tag: Liver (HBV+, HK9)


title: HCC (HBV+, HK9)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12675.gif

source_name: HCC (HBV+, HK9)

tag: HCC (HBV+, HK9)


title: HCC (HBV+, SF27)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12671.gif

source_name: HCC (HBV+, SF27)

tag: HCC (HBV+, SF27)


title: HCC (HBV+, SF22)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12669.gif

source_name: HCC (HBV+, SF22)

tag: HCC (HBV+, SF22)


title: HCC (HCV+, SF20)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12670.gif

source_name: HCC (HCV+, SF20)

tag: HCC (HCV+, SF20)


title: HCC (HBV+, HK21)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13107.gif

source_name: HCC (HBV+, HK21)

tag: HCC (HBV+, HK21)


title: Liver (HCV+, SF28, 2)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12673.gif

source_name: Liver (HCV+, SF28, 2)

tag: Liver (HCV+, SF28, 2)


title: HCC (HBV+, HK20)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13105.gif

source_name: HCC (HBV+, HK20)

tag: HCC (HBV+, HK20)


title: Liver (HBV+, SF23)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12453.gif

source_name: Liver (HBV+, SF23)

tag: Liver (HBV+, SF23)


title: Liver (HBV+, HK21)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13106.gif

source_name: Liver (HBV+, HK21)

tag: Liver (HBV+, HK21)


title: HCC (HBV+, SF21)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12667.gif

source_name: HCC (HBV+, SF21)

tag: HCC (HBV+, SF21)


title: Liver (HBV+, HK31)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs//7347.gif

source_name: Liver (HBV+, HK31)

tag: Liver (HBV+, HK31)


title: Liver (HBV+, HK33)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs//7346.gif

source_name: Liver Reference 1

source_name: Liver (HBV+, HK33)

tag: Liver (HBV+, HK33)


title: SNU449 cells

description:
Simple annotation: Cell-line, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3169.gif

source_name: SNU449 (CRL2234) cells

tag: SNU449 (CRL2234) cells


title: HCC (HBV+, CH3)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12504.gif

source_name: HCC (HBV+, CH3)

tag: HCC (HBV+, CH3)


title: Liver (HBV+, HK6)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12508.gif

tag: Liver Reference 1

source_name: Liver (HBV+, HK6)

tag: Liver (HBV+, HK6)


title: HCC (HBV+, HK5)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12511.gif

source_name: HCC (HBV+, HK5)

tag: HCC (HBV+, HK5)


title: HCC (HBV+, SF17)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12503.gif

source_name: HCC (HBV+, SF17)

tag: HCC (HBV+, SF17)


title: HCC (HBV+, SF23)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12668.gif

source_name: HCC (HBV+, SF23)

tag: HCC (HBV+, SF23)


title: Liver (HCV+, SF3)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7554.gif

source_name: Liver (HCV+, SF3)

tag: Liver (HCV+, SF3)


title: Synovial Cell Sarcoma (SF14)

description:
Simple annotation: Metastatic tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12406.gif

source_name: Sarcoma (SF14)

tag: Sarcoma (SF14)


title: HCC (HBV+, SF35, 3)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9960.gif

source_name: HCC (HBV+, SF35, 3)

tag: HCC (HBV+, SF35, 3)


title: HepG2 cells

description:
Simple annotation: Cell-line, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-02/2866.gif

source_name: HepG2 cells

tag: HepG2 cells


title: Liver (HBV+, SF15)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs//12403.gif

source_name: Liver (HBV+, SF15)

tag: Liver (HBV+, SF15)


title: Hep3B cells

description:
Simple annotation: Cell-line, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-02/2917.gif

source_name: Hep3B (HB8064) cells

tag: Hep3B (HB8064) cells


title: Liver (HBV+, SF32)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7556.gif

source_name: Liver (HBV+, SF32)

tag: Liver (HBV+, SF32)


title: Liver (HBV+, HK5)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12506.gif

source_name: Liver (HBV+, HK5)

tag: Liver (HBV+, HK5)


title: HCC (HBV+, HK29)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7776.gif

source_name: HCC (HBV+, HK29)

tag: HCC (HBV+, HK29)


title: HCC (HBV+, HK60)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9863.gif

source_name: Liver Reference 1

source_name: HCC (HBV+, HK60)

tag: HCC (HBV+, HK60)


title: HCC (HBV+, SF18)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12680.gif

source_name: HCC (HBV+, SF18)

tag: HCC (HBV+, SF18)


title: HCC (HBV+, HK7)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12542.gif

source_name: HCC (HBV+, HK7)

tag: HCC (HBV+, HK7)


title: HCC (HBV+, HK24)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6974.gif

tag: Liver Reference 1

source_name: HCC (HBV+, HK24)

tag: HCC (HBV+, HK24)


title: HCC (HBV+, HK39)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7603.gif

source_name: HCC (HBV+, HK39)

tag: HCC (HBV+, HK39)


title: HCC (HBV+, SF32)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7552.gif

source_name: HCC (HBV+, SF32)

tag: HCC (HBV+, SF32)


title: Liver (HCV+, SF30)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12533.gif

source_name: Liver (HCV+, SF30)

tag: Liver (HCV+, SF30)


title: HCC (HBV+, HK85, T2)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10403.gif

source_name: HCC (HBV+, HK85, T2)

tag: HCC (HBV+, HK85, T2)


title: HCC (HBV+, HK31)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs//7344.gif

source_name: HCC (HBV+, HK31)

tag: HCC (HBV+, HK31)


title: HCC (HBV+, HK86)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10407.gif

source_name: HCC (HBV+, HK86)

tag: HCC (HBV+, HK86)


title: HCC (HCV+, SF3)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7551.gif

source_name: HCC (HCV+, SF3)

tag: HCC (HCV+, SF3)


title: Liver (HCV+, SF29, S2)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12530.gif

source_name: Liver (HCV+, SF29, S2)

tag: Liver (HCV+, SF29, S2)


title: Liver (HBV+, HK20)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13103.gif

source_name: Liver (HBV+,  HK20)

tag: Liver (HBV+,  HK20)


title: Liver (HBV+, HK7)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12540.gif

source_name: Liver (HBV+, HK7)

tag: Liver (HBV+, HK7)


title: HCC (HBV+, HK51)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10408.gif

source_name: HCC (HBV+, HK51)

tag: HCC (HBV+, HK51)


title: HCC (HBV+, SF1, 2)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7550.gif

source_name: HCC (HBV+, SF1, 2)

tag: HCC (HBV+, SF1, 2)


title: Liver (HBV+, HK39)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7602.gif

source_name: Liver Reference 1

source_name: Liver (HBV+, HK39)

tag: Liver (HBV+, HK39)


title: Liver (HBV+, HK30)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs//7254.gif

source_name: Liver (HBV+, HK30)

tag: Liver (HBV+, HK30)


title: HCC (HBV+, HK38)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7600.gif

source_name: HCC (HBV+, HK38)

tag: HCC (HBV+, HK38)


title: HCC (HCV+, SF30)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12536.gif

tag: Liver Reference 1

source_name: HCC (HCV+, SF30)

tag: HCC (HCV+, SF30)


title: HCC (HBV+, HK59)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9857.gif

source_name: HCC (HBV+, HK59)

tag: HCC (HBV+, HK59)


title: HCC (HCV+, SF24)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11054.gif

source_name: HCC (HCV+, SF24)

tag: HCC (HCV+, SF24)


title: HCC (HK6)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6919.gif

source_name: HCC (HK6)

tag: HCC (HK6)


title: HCC (HK23)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6963.gif

source_name: HCC (HK23)

tag: HCC (HK23)


title: HCC (HBV+, HK28)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs//7253.gif

source_name: HCC (HBV+, HK28)

tag: HCC (HBV+, HK28)


title: Met. Ovarian Granulosa Cell Tumor (SF39, T1)

description:
Simple annotation: Metastatic tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12395.gif

source_name: Sarcoma (SF39, T1)

tag: Sarcoma (SF39, T1)


title: Liver (HCV+, SF29, S1)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/12513.gif

source_name: Liver (HCV+, SF29, S1)

tag: Liver (HCV+, SF29, S1)


title: HCC (HBV+, HK85, T1)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10397.gif

source_name: HCC (HBV+, HK85, T1)

tag: HCC (HBV+, HK85, T1)


title: HCC (HBV+, HK84)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11478.gif

source_name: HCC (HBV+, HK84)

tag: HCC (HBV+, HK84)


title: HCC (HBV+, HK37)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7595.gif

source_name: HCC (HBV+, HK37)

tag: HCC (HBV+, HK37)


title: Met. Granulosa Cell Tumor (SF39, T2)

description:
Simple annotation: Metastatic tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12397.gif

source_name: Sarcoma (SF39, T2)

tag: Sarcoma (SF39, T2)


title: HCC (HBV+, HK1)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7439.gif

source_name: HCC (HBV+, HK1)

tag: HCC (HBV+, HK1)


title: Liver (HBV+, HK28)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs//7252.gif

source_name: Liver Reference 1

source_name: Liver (HBV+, HK28)

tag: Liver (HBV+, HK28)


title: Liver (HBV+, HK37)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7583.gif

source_name: Liver (HBV+, HK37)

tag: Liver (HBV+, HK37)


title: Liver (HBV+, HK26)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6946.gif

source_name: Liver (HBV+, HK26)

tag: Liver (HBV+, HK26)


title: Liver (HBV+, HK1)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7435.gif

tag: Liver Reference 1

source_name: Liver (HBV+, HK1)

tag: Liver (HBV+, HK1)


title: HCC (HK41)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9475.gif

source_name: HCC (HBV+, HK41)

tag: HCC (HBV+, HK41)


title: HCC (HBV+, HK33)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs//7345.gif

source_name: HCC (HBV+, HK33)

tag: HCC (HBV+, HK33)


title: Met. Colon Cancer (SF38)

description:
Simple annotation: Metastatic tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12394.gif

source_name: Met. Colon Cancer (SF38)

tag: Met. Colon Cancer (SF38)


title: HCC (HBV+, HK42)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-08/9479.gif

source_name: HCC (HBV+, HK42)

tag: HCC (HBV+, HK42)


title: HCC (HBV+, HK27)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs//7251.gif

source_name: HCC (HBV+, HK27)

tag: HCC (HBV+, HK27)


title: SNU423 cells

description:
Simple annotation: Cell-line, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-02/3099.gif

source_name: SNU423 (CRL2238) cells

tag: SNU423 (CRL2238) cells


title: Hep40 cells

description:
Simple annotation: Cell-line, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-02/2872.gif

source_name: Hep40 cells

tag: Hep40 cells


title: HCC (HBV+, HK3)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7442.gif

source_name: HCC (HBV+, HK3)

tag: HCC (HBV+, HK3)


title: Liver (HBV+, HK3)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7441.gif

source_name: Liver (HBV+, HK3)

tag: Liver (HBV+, HK3)


title: SNU387 cells

description:
Simple annotation: Cell-line, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-02/3098.gif

source_name: SNU387 (CRL2237) cells

tag: SNU387 (CRL2237) cells


title: HCC (HBV+, HK36)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7430.gif

source_name: HCC (HBV+, HK36)

tag: HCC (HBV+, HK36)


title: SNU475 cells

description:
Simple annotation: Cell-line, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-02/2873.gif

source_name: SNU475 (CRL2236) cells

tag: SNU475 (CRL2236) cells


title: HCC (HBV+, HK43)

description:
Simple annotation: Primary tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/9962.gif

source_name: Liver Reference 1

source_name: HCC (HBV+, HK43)

tag: HCC (HBV+, HK43)


title: Met. Colon Cancer (SF37)

description:
Simple annotation: Metastatic tumor, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-12/12393.gif

source_name: Met. Colon Cancer (SF37)

tag: Met. Colon Cancer (SF37)


title: Liver (HBV+, HK27)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs//7250.gif

source_name: Liver (HBV+, HK27)

tag: Liver (HBV+, HK27)


title: SNU182 cells

description:
Simple annotation: Cell-line, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-03/3154.gif

tag: Liver Reference 1

source_name: SNU182 (CRL2235) cells

tag: SNU182 (CRL2235) cells


title: wt vs aft1up: met

status: Public on Oct 22 2005

description:
Simple annotation: Martel, Martel
Image: http://smd.stanford.edu/MicroArray/gifs/1999-10/8662.gif

data_processing: VALUE is Log (base 2) of the ratio of the mean of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

source_name: wt

tag: wt


title: Liver (HBV+, HK38)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7596.gif

source_name: Liver (HBV+, HK38)

tag: Liver (HBV+, HK38)


title: 20 uM Fe vs 100 uM Fe: met

description:
Simple annotation: Martel, Martel
Image: http://smd.stanford.edu/MicroArray/gifs/1999-10/8685.gif

source_name: 100 uM Fe

tag: 100 uM Fe

source_name: 20 uM Fe

tag: 20 uM Fe


title: Liver (SF11)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11480.gif

source_name: Liver (SF11)

tag: Liver (SF11)


title: Liver (HBV+, HK24)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6981.gif

source_name: Liver (HBV+, HK24)

tag: Liver (HBV+, HK24)


title: Liver (HBV+, HK89)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2001-04/15019.gif

source_name: Liver (HBV+, HK89)

tag: Liver (HBV+, HK89)


title: Adenoma (SF25)

description:
Simple annotation: Adenoma, Liver
Image: http://smd.stanford.edu/MicroArray/gifs//7350.gif

source_name: Adenoma (SF25)

tag: Adenoma (SF25)


title: Liver (HBV+, HK36)

description:
Simple annotation: Non-tumor tissue, Liver
Image: http://smd.stanford.edu/MicroArray/gifs/2000-07/7432.gif

source_name: Liver (HBV+, HK36)

tag: Liver (HBV+, HK36)


title: FAS3: met3.1

description:
Simple annotation: Martel, Martel
Image: http://smd.stanford.edu/MicroArray/gifs/1999-10/8687.gif


title: 14h mitotic selection

description:
Simple annotation: Cell-cycle, Mitotic selection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16453.gif

source_name: "Hela Reference 3, total RNA amplified by Whitfield's modified protocol"

source_name: 14h mitotic selection

tag: 14h mitotic selection


title: 10h mitotic selection

description:
Simple annotation: Cell-cycle, Mitotic selection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16451.gif

tag: "Hela Reference 3, total RNA amplified by Whitfield's modified protocol"

source_name: 10h mitotic selection

tag: 10h mitotic selection


title: 12 hr Hela Double Thymidine

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs//7301.gif

source_name: Asynchronous Hela Cells ref1

tag: Asynchronous Hela Cells ref1

source_name: 12 hr Hela Double Thymidine

tag: 12 hr Hela Double Thymidine


title: 2h mitotic selection

description:
Simple annotation: Cell-cycle, Mitotic selection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16435.gif

source_name: 2h mitotic selection

tag: 2h mitotic selection


title: "22h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14362.gif

source_name: Hela Reference 3 primed with oligo dT

tag: Hela Reference 3 primed with oligo dT

source_name: "22h Thy-Noc, Exp4"

tag: "22h Thy-Noc, Exp4"


title: 12h mitotic selection

description:
Simple annotation: Cell-cycle, Mitotic selection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16452.gif

source_name: 12h mitotic selection

tag: 12h mitotic selection


title: "34 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13150.gif

source_name: "34 hr Hela Double Thymidine, exp3"

tag: "34 hr Hela Double Thymidine, exp3"


title: "20h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14357.gif

source_name: "20h Thy-Noc, Exp4"

tag: "20h Thy-Noc, Exp4"


title: 0h mitotic selection

description:
Simple annotation: Cell-cycle, Mitotic selection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16425.gif

source_name: 0h mitotic selection

tag: 0h mitotic selection


title: "0_1 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13406.gif

source_name: "0_1 hr Hela Double Thymidine, exp3"

tag: "0_1 hr Hela Double Thymidine, exp3"


title: 10 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10136.gif

source_name: Asynchronous Hela Cells ref2

tag: Asynchronous Hela Cells ref2

source_name: 10 hr Hela Double Thymidine

tag: 10 hr Hela Double Thymidine


title: 10 hr Hela Double Thymidine

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs//7300.gif


title: 4hr Hela Double Thymidine

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs//7275.gif

source_name: 4hr Hela Double Thymidine

tag: 4hr Hela Double Thymidine


title: "1 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13407.gif

source_name: "1 hr Hela Double Thymidine, exp3"

tag: "1 hr Hela Double Thymidine, exp3"


title: "42 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13155.gif

source_name: "42 hr Hela Double Thymidine, exp3"

tag: "42 hr Hela Double Thymidine, exp3"


title: "16h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14348.gif

source_name: "16h Thy-Noc, Exp4"

tag: "16h Thy-Noc, Exp4"


title: "46 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13157.gif

source_name: "46 hr Hela Double Thymidine, exp3"

tag: "46 hr Hela Double Thymidine, exp3"


title: "44 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13156.gif

source_name: "44 hr Hela Double Thymidine, exp3"

tag: "44 hr Hela Double Thymidine, exp3"


title: 8h mitotic selection

description:
Simple annotation: Cell-cycle, Mitotic selection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16450.gif

source_name: "Hela Reference 3, total RNA amplified by Whitfield's modified protocol"

source_name: 8h mitotic selection

tag: 8h mitotic selection


title: "14h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14347.gif

source_name: Hela Reference 3 primed with oligo dT

source_name: "14h Thy-Noc, Exp4"

tag: "14h Thy-Noc, Exp4"


title: "40 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13154.gif

tag: Hela Reference 3 primed with oligo dT

source_name: "40 hr Hela Double Thymidine, exp3"

tag: "40 hr Hela Double Thymidine, exp3"


title: 4h mitotic selection

description:
Simple annotation: Cell-cycle, Mitotic selection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16444.gif

tag: "Hela Reference 3, total RNA amplified by Whitfield's modified protocol"

source_name: 4h mitotic selection

tag: 4h mitotic selection


title: "38 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13152.gif

source_name: "38 hr Hela Double Thymidine, exp3"

tag: "38 hr Hela Double Thymidine, exp3"


title: 6h mitotic selection

description:
Simple annotation: Cell-cycle, Mitotic selection
Image: http://smd.stanford.edu/MicroArray/gifs/2001-05/16447.gif

source_name: 6h mitotic selection

tag: 6h mitotic selection


title: "10h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14345.gif

source_name: "10h Thy-Noc, Exp4"

tag: "10h Thy-Noc, Exp4"


title: "24h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14350.gif

source_name: "24h Thy-Noc, Exp4"

tag: "24h Thy-Noc, Exp4"


title: "18h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14349.gif

source_name: "18h Thy-Noc, Exp4"

tag: "18h Thy-Noc, Exp4"


title: "36 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13151.gif

source_name: "36 hr Hela Double Thymidine, exp3"

tag: "36 hr Hela Double Thymidine, exp3"


title: "12h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14346.gif

source_name: "12h Thy-Noc, Exp4"

tag: "12h Thy-Noc, Exp4"


title: 11 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10165.gif

source_name: Asynchronous Hela Cells ref7

tag: Asynchronous Hela Cells ref7

source_name: 11 hr Hela Double Thymidine, exp2

tag: 11 hr Hela Double Thymidine, exp2


title: "8h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14344.gif

source_name: "8h Thy-Noc, Exp4"

tag: "8h Thy-Noc, Exp4"


title: 6 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10133.gif

source_name: Asynchronous Hela Cells ref2

tag: Asynchronous Hela Cells ref2

source_name: 6 hr Hela Double Thymidine

tag: 6 hr Hela Double Thymidine


title: "6h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14343.gif

source_name: "6h Thy-Noc, Exp4"

tag: "6h Thy-Noc, Exp4"


title: 9 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10163.gif

source_name: Asynchronous Hela Cells ref6

tag: Asynchronous Hela Cells ref6

source_name: 9 hr Hela Double Thymidine, exp2

tag: 9 hr Hela Double Thymidine, exp2


title: 4 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10130.gif

source_name: 4 hr Hela Double Thymidine

tag: 4 hr Hela Double Thymidine


title: 1 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10158.gif

source_name: 1 hr Hela Double Thymidine, exp2

tag: 1 hr Hela Double Thymidine, exp2


title: 7 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10161.gif

source_name: Asynchronous Hela Cells ref4

tag: Asynchronous Hela Cells ref4

source_name: 7 hr Hela Double Thymidine, exp2

tag: 7 hr Hela Double Thymidine, exp2


title: 8 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10162.gif

source_name: Asynchronous Hela Cells ref5

tag: Asynchronous Hela Cells ref5

source_name: 8 hr Hela Double Thymidine, exp2

tag: 8 hr Hela Double Thymidine, exp2


title: 44 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10149.gif

source_name: 44 hr Hela Double Thymidine

tag: 44 hr Hela Double Thymidine


title: 14 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10143.gif

source_name: 14 hr Hela Double Thymidine

tag: 14 hr Hela Double Thymidine


title: 16 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10145.gif

source_name: 16 hr Hela Double Thymidine

tag: 16 hr Hela Double Thymidine


title: 28 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10147.gif

source_name: 28 hr Hela Double Thymidine

tag: 28 hr Hela Double Thymidine


title: "32 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13149.gif

source_name: Hela Reference 3 primed with oligo dT

tag: Hela Reference 3 primed with oligo dT

source_name: "32 hr Hela Double Thymidine, exp3"

tag: "32 hr Hela Double Thymidine, exp3"


title: 3 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10159.gif

source_name: Asynchronous Hela Cells ref2

tag: Asynchronous Hela Cells ref2

source_name: 3 hr Hela Double Thymidine, exp2

tag: 3 hr Hela Double Thymidine, exp2


title: 12 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10140.gif

source_name: 12 hr Hela Double Thymidine

tag: 12 hr Hela Double Thymidine


title: 5 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10160.gif

source_name: Asynchronous Hela Cells ref3

tag: Asynchronous Hela Cells ref3

source_name: 5 hr Hela Double Thymidine, exp2

tag: 5 hr Hela Double Thymidine, exp2


title: "20 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13142.gif

source_name: "20 hr Hela Double Thymidine, exp3"

tag: "20 hr Hela Double Thymidine, exp3"


title: "22 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13143.gif

source_name: "22 hr Hela Double Thymidine, exp3"

tag: "22 hr Hela Double Thymidine, exp3"


title: 0 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10127.gif

source_name: 0 hr Hela Double Thymidine

tag: 0 hr Hela Double Thymidine


title: 30 hr Hela Double Thymidine

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs//7278.gif

source_name: Asynchronous Hela Cells ref1

tag: Asynchronous Hela Cells ref1

source_name: 30 hr Hela Double Thymidine

tag: 30 hr Hela Double Thymidine


title: "41 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13431.gif

source_name: "41 hr Hela Double Thymidine, exp3"

tag: "41 hr Hela Double Thymidine, exp3"


title: "45 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13433.gif

source_name: "45 hr Hela Double Thymidine, exp3"

tag: "45 hr Hela Double Thymidine, exp3"


title: 36 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10148.gif

source_name: 36 hr Hela Double Thymidine

tag: 36 hr Hela Double Thymidine


title: "30 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13148.gif

source_name: "30 hr Hela Double Thymidine, exp3"

tag: "30 hr Hela Double Thymidine, exp3"


title: "2h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14341.gif

source_name: "2h Thy-Noc, Exp4"

tag: "2h Thy-Noc, Exp4"


title: "26 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13146.gif

source_name: Hela Reference 3 primed with oligo dT

tag: Hela Reference 3 primed with oligo dT

source_name: "26 hr Hela Double Thymidine, exp3"

tag: "26 hr Hela Double Thymidine, exp3"


title: 8 hr Hela Double Thymidine

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs//7299.gif

source_name: 8 hr Hela Double Thymidine

tag: 8 hr Hela Double Thymidine


title: 20 hr Hela Double Thymidine

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs//7277.gif

source_name: 20 hr Hela Double Thymidine

tag: 20 hr Hela Double Thymidine


title: 24 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10146.gif

source_name: Asynchronous Hela Cells ref2

tag: Asynchronous Hela Cells ref2

source_name: 24 hr Hela Double Thymidine

tag: 24 hr Hela Double Thymidine


title: "35 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13428.gif

source_name: "35 hr Hela Double Thymidine, exp3"

tag: "35 hr Hela Double Thymidine, exp3"


title: "43 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13432.gif

source_name: "43 hr Hela Double Thymidine, exp3"

tag: "43 hr Hela Double Thymidine, exp3"


title: "37 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13429.gif

source_name: "37 hr Hela Double Thymidine, exp3"

tag: "37 hr Hela Double Thymidine, exp3"


title: "28 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13147.gif

source_name: "28 hr Hela Double Thymidine, exp3"

tag: "28 hr Hela Double Thymidine, exp3"


title: "33 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13427.gif

source_name: "33 hr Hela Double Thymidine, exp3"

tag: "33 hr Hela Double Thymidine, exp3"


title: 6hr Hela Double Thymidine

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs//7274.gif

source_name: Asynchronous Hela Cells ref1

tag: Asynchronous Hela Cells ref1

source_name: 6hr Hela Double Thymidine

tag: 6hr Hela Double Thymidine


title: "39 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13430.gif

source_name: "39 hr Hela Double Thymidine, exp3"

tag: "39 hr Hela Double Thymidine, exp3"


title: "4h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14342.gif

source_name: "4h Thy-Noc, Exp4"

tag: "4h Thy-Noc, Exp4"


title: 0.2hr Hela Double Thymidine

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs//7272.gif

source_name: 0.2hr Hela Double Thymidine

tag: 0.2hr Hela Double Thymidine


title: "29 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13425.gif

source_name: "29 hr Hela Double Thymidine, exp3"

tag: "29 hr Hela Double Thymidine, exp3"


title: "0h Thy-Noc, Exp4"

description:
Simple annotation: Cell-cycle, thymidine-nocodazole
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14340.gif

source_name: Hela Reference 3 primed with oligo dT

tag: Hela Reference 3 primed with oligo dT

source_name: "0h Thy-Noc, Exp4"

tag: "0h Thy-Noc, Exp4"


title: 16 hr Hela Double Thymidine

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs//7276.gif

source_name: 16 hr Hela Double Thymidine

tag: 16 hr Hela Double Thymidine


title: "24 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13144.gif

source_name: "24 hr Hela Double Thymidine, exp3"

tag: "24 hr Hela Double Thymidine, exp3"


title: 0.1hr Hela Double Thymidine

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs//7271.gif

source_name: 0.1hr Hela Double Thymidine

tag: 0.1hr Hela Double Thymidine


title: 2hr Hela Double Thymidine

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs//7273.gif

source_name: 2hr Hela Double Thymidine

tag: 2hr Hela Double Thymidine


title: "31 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13426.gif

source_name: "31 hr Hela Double Thymidine, exp3"

tag: "31 hr Hela Double Thymidine, exp3"


title: "27 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13424.gif

source_name: "27 hr Hela Double Thymidine, exp3"

tag: "27 hr Hela Double Thymidine, exp3"


title: 14 hr Hela Double Thymidine

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs//7302.gif

source_name: Asynchronous Hela Cells ref2

tag: Asynchronous Hela Cells ref2

source_name: 14 hr Hela Double Thymidine

tag: 14 hr Hela Double Thymidine


title: 2 hr Hela Double Thymidine, exp2

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2000-09/10129.gif

source_name: 2 hr Hela Double Thymidine

tag: 2 hr Hela Double Thymidine


title: "25 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13423.gif

source_name: "25 hr Hela Double Thymidine, exp3"

tag: "25 hr Hela Double Thymidine, exp3"


title: "18 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13138.gif

source_name: "18 hr Hela Double Thymidine, exp3"

tag: "18 hr Hela Double Thymidine, exp3"


title: "14 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13135.gif

source_name: "14 hr Hela Double Thymidine, exp3"

tag: "14 hr Hela Double Thymidine, exp3"


title: "21 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13421.gif

source_name: "21 hr Hela Double Thymidine, exp3"

tag: "21 hr Hela Double Thymidine, exp3"


title: "16 hr Hela Double Thymidine, exp3"

description:
Simple annotation: Cell-cycle, Dbl thymidine
Image: http://smd.stanford.edu/MicroArray/gifs/2001-01/13136.gif

source_name: "16 hr Hela Double Thymidine, exp3"

tag: "16 hr Hela Double Thymidine, exp3"