title: 60 min oxygen depletion

description: Aerobic cultures were maintained by sparging the chemostat with air (0.4 l min-1). The switch to micro-aerobic conditions was achieved by switching off the air sparging the culture. After a period of 60 min exposure to air cells were harvested directly into RNA Protect (Qiagen) to stabilize RNA before total RNA purification using Qiagen’s Rneasy Midi kit as recommended by manufacturer’s instructions. Data from control samples (aerobic) were used in indirect comparisons with 5 min, 10 min, 15 min and 60 min of oxygen depletion. Dye swaps and biological repeats were carried out giving two biological repeats and two technical repeats (see supplementary files).

scan_protocol: Arrays scanned using an Affymetrix 428 scanner and Imagene version 5.1 software.

data_processing: Control (aerobic) and 60 min oxygen depletion samples from two biological replicates and two dye swap experiments were compared, LOG2 LOWESS normalized data is shown.

source_name: Steady-state continuous cultured control samples in presence of oxygen

source_name: Steady-state continuous cultured experimental samples after 60 min oxygen depletion.


title: 2074

status: Public on May 11 2007

type: RNA

city: Ottawa

first: Benjamin

last: Tsang

address: 725 Parkdale Avenue

country: Canada

institute: Ottawa Health Research Institute

description: Granulosa cell gene expression associated with oocyte developmental competence

hyb_protocol: According to standard Affymetrix protocol

label: biotin

molecule: total RNA

organism: Rattus norvegicus

source_name: rat ovarian granulosa cells, isolated from ovarian follicles

extract_protocol: Total RNA was extracted using the RNeasy kit (Qiagen) following the manufacturer’s protocol

tag: 48 h after equine chorionic gonadotropin (eCG) treatment followed by human chorionic gonadotropin (hCG) injection for 12 h


title: 2196

scan_protocol: According to standard Affymetrix protocol


title: ES-C57BL6.9  Lif+(251411710184)

city: Baltimore

first: Minoru

last: Ko

state: MD

address: 251 Bayview Blvd, Suite 100, 10C

department: National Institute on Aging

country: USA

institute: NIH

description: Embryonic stem cells

hyb_protocol: Agilent 60-mer oligo microarray processing protocol (SSC Wash/SureHyb Chamber set-up) V4.1, April 2004.  Agilent Publication Number:  G4140-90030 V4.1 APRIL 2004.

scan_protocol: Slides were scanned with an Agilent DNA Microarray Scanner model G2505-64120 at 100% PMT in both channels, with a scan resolution of 10um.  A scan window of 61 x 21.6 mm was used, then images were cropped to size and saved in a modified two-color TIFF format.  Images were examined visually for evidence of foreign debris or major failures. Agilent Microarray Scanner User Manual (6.3)

data_processing: Data are extracted with Agilent Feature Extraction Software.The data were further processed with NIA ANOVA tool utilities.See NIA Array Analysis website for details.

organism: Mus musculus

source_name: ES-C57BL6.9  Lif+

label_protocol: Total RNA was labeled using Agilents Low RNA Input Fluorescent Linear Amplification kit, according to manufacturers instructions.

growth_protocol: ES grown without feeders on gelatin coated, 6-well plates, 100000 cells/well (10000 cells/cm2), in complete ES medium: DMEM, 15% FBS; LIF (ESGRO) 1000 u/ml; 1mM sodium pyruvate; 0.1 mM NEAA, 2 mM glutamate,0.1 mM beta-mercapto ethanol, and penicillin/streptomycin. Cells were incubated at 37 0C; 5% CO2. Medium was changed daily. On the day 3 Trizol was added and RNA extracted. for 30 minutes to remove retained ethanol. 6.Resuspend the pellet in RNase-free water to the desired concentration.

extract_protocol: One ml of TrizolTM (Invitrogen) was added to 1 well. Total RNA was extracted using Phase lock gelTM (Eppendorf) columns according to manufacturer protocol. RNA was precipitated with isopropanol, washed with 70% ethanol and dissolved in 10 ul of DEPC dH2O.

tag: Embryonic stem cells

tag: Strain

tag: Gender

value: male

source_name: Universal Mouse Reference Cell Line Pool

label_protocol: Total RNA was labeled using Agilents Fluorescent Linear Amplification kit, according to manufacturers instructions (Product Number G2554A or P/N G2556-66002, Version 3.0, June 2002).

growth_protocol: The UMRR is provided in a solution of 70% ethanol and 0.1 M sodium acetate. Prepare the UMRR for use as follows: 1.Centrifuge the tube at 12,000 x g for 15 minutes at 4C.  2.Carefully remove the supernatant. 3.Wash the pellet in 70% ethanol. 4.Centrifuge the tube at 12,000 x g for 15 minutes at 4C.  5.Carefully remove the supernatant and air-dry the pellet at room temperature for 30 minutes to remove retained ethanol. 6.Resuspend the pellet in RNase-free water to the desired concentration.

extract_protocol: Total RNA was extracted from cultured cells using a Stratagene Absolutely RNA kit. DNase-treated total RNA samples from 11 cultured cell lines derived from embryo, embryo fibroblast, kidney, liver/hepatocyte, lung/alveolar macrophage, B-lymphocyte, T-lymphocyte (thymus), mammary gland, muscle myoblast, skin, and testis were pooled in equal parts

tag: Universale Mouse Reference


title: 2076

label_protocol: According to standard Affymetrix protocol

tag: eCG treatment for 24 h followed by injection of anti-eCG antiserum for 24 h, then the injection of hCG for 12 h


title: 10 min oxygen depletion

status: Public on May 10 2007

city: Sheffield

first: Jonathan

last: Partridge

address: Firth Court, Western Bank

department: Molecular Biology and Biotechnology

country: United Kingdom

institute: The University of Sheffield

description: Aerobic cultures were maintained by sparging the chemostat with air (0.4 l min-1). The switch to micro-aerobic conditions was achieved by switching off the air sparging the culture. After a period of 10 min exposure to air cells were harvested directly into RNA Protect (Qiagen) to stabilize RNA before total RNA purification using Qiagen’s Rneasy Midi kit as recommended by manufacturer’s instructions. Data from control samples (aerobic) were used in indirect comparisons with 5 min, 10 min, 15 min and 60 min of oxygen depletion. Dye swaps and biological repeats were carried out giving two biological repeats and two technical repeats (see supplementary files).

hyb_protocol: Labelled cDNA hybridised using the MWG Gene-Frame system. Slides placed in shaking water bath for 16 h at 42 °C. Arrays then washed in 2x SSC (+0.1 % SDS), 1x SSC, 0.2x SSC and 0.1x SSC, each at 37 °C for 5 min prior to drying and scanning.

scan_protocol: Arrays scanned using an Affymetrix 428 scanner and Imagene version 4 software.

data_processing: Control (aerobic) and 10 min oxygen depletion samples from two biological replicates and two dye swap experiments were compared, LOG2 LOWESS normalized data is shown.

label: Cy3/5 dye swap

organism: Escherichia coli

label_protocol: Labelled with Cy3/Cy5 during cDNA synthesis from total RNA using Superscript II Kit (Invitrogen) as manufacturers instructions. Samples purified using QIAGEN PCR purification kit before hybridization.

extract_protocol: Bacterial cultures flushed directly into QIAGEN RNAprotect before total RNA isolation using QIAGEN RNEasy Midi kit with on column DNAse digestion.

source_name: Steady-state continuous cultured experimental samples after 10 min oxygen depletion.


title: NK_cell_pool_melanoma_M09+M10

status: Public on May 09 2007

city: Stanford

first: Peter

middle: P.

last: Lee

state: CA

address: CCSR room 1155, 269 Campus Drive

department: Department of Medicine

institute: Stanford University

description: Gene expression profiles of pure sorted peripheral blood lymphocytes from melanoma patients and healthy controls.

hyb_protocol: 750ng Cy3-labeled aRNA, 750ng Cy5-labeled total lymphocyte reference aRNA and 50μl Agilent control targets were pooled, and fragmented using the Agilent Fragmentation buffer for 30 mins at 60°C. Agilent hybridization buffer was added, and 490μl of target solution was hybridized onto Agilent Human 1A Oligo Microarrays (v2) using the SureHyb (Agilent) assembly and incubated at 60°C at 4rpm for 17 hours.

scan_protocol: The arrays were washed and dried according to the Agilent SSPE wash protocol and scanned using the Agilent Microarray Scanner. The data was extracted from the images using the Agilent Feature Extraction Software, v7.1.

data_processing:
The open source R software package (http://www.r-project.org) and tools from the BioConductor project (http://www.bioconductor.org) were used for processing and analysis of the microarray data.
The Agilent control features were removed. Features that were saturated on at least one array were also excluded from analysis. For each array the VSN (variance stabilizing normalization) function was applied to the mean foreground Cy5 and Cy3 intensities, resulting in a ’generalized log ratio’ value for each feature. This was followed by quantile normalization across the arrays.

organism: Homo sapiens

label_protocol:
100ng total RNA from sorted cells was used as input for one round of aRNA amplification using the Amino Allyl MessageAmpTM II aRNA Amplification Kit (Ambion).
Amino-allyl-aRNA samples (2μg of each) were pooled in age and gender matched pairs. The pooled sample was vacuum dried to completion and resuspended in 8μl coupling buffer (Ambion, Inc).
aRNA was labeled with 20,000pmol Cy Dye Post Labeling Reactive Dyes (Amersham Biosciences Corp., NJ) at room temperature for 30 mins followed by addition of hydroxylamine to 0.18M to quench unreacted dye, for 15 mins at room temperature protected from light. Labeled aRNA was purified using the RNeasy MinElute Cleanup kit (Qiagen).  The labeling resulted in 30-60 dye molecules/1000nt.

extract_protocol:
Peripheral blood mononuclear cells (PBMCs) were obtained and cryopreserved in 90% NCS 10% DMSO. Cryopreserved PBMCs were thawed, extensively washed and rested overnight in RPMI 1640 containing 10% FBS, penicillin, streptomycin and L-glutamine. The cells were incubated with fluorescently conjugated monoclonal mouse anti-human antibodies to CD3, CD4, CD8, CD16, CD19 and CD56 (BD Biosciences and Caltag, CA) for 30 mins, washed and resuspended in RPMI 50% FBS and kept on ice. The stained cells were sorted by flow cytometry using the BD FACS Aria into CD8 T cells (CD3+ CD8+ CD4- CD19- CD56- CD16-), CD4 T cells (CD3+ CD4+ CD8- CD19- CD56- CD16-), B cells (CD19+ CD3- CD8- CD4- CD16- CD56-) and CD56dim NK cells (CD19- CD3- CD56dim CD16+). 200,000 cells were sorted into ice-cold RPMI with 50% FBS to preserve cell viability. The sorted cells were pelleted by centrifugation at 1500 rpm 5 mins, homogenized in 1mL TRIzol (Invitrogen, CA) plus 10μg linear acrylamide as a coprecipitant and stored at -80°C.
Total RNA was isolated from TRIzol homogenates according to the manufacturer’s protocol and resuspended in RNase-free water. Genomic DNA was removed using the DNA-free kit (Ambion), according to manufacturer’s protocol. RNA quantity and quality were checked using the Nanodrop ND1000A spectrophotometer (Nanodrop Technologies, DE, USA) and the RNA 6000 Pico LabChip assay using the Agilent 2100 Bioanalyzer (Agilent Technologies, CA, USA).

tag: A pool of two pure subsets of peripheral blood CD56dim natural killer cells (CD19- CD3- CD56dim Cd16+), stringently sorted by flow cytometry, from two age and gender matched stage IV (American Joint Committee on Cancer) melanoma patients.

source_name: Total Lymphocyte Reference RNA

label_protocol:
1μg total lymphocyte reference RNA was used as input for one round of aRNA amplification using the Amino Allyl MessageAmpTM II aRNA Amplification Kit (Ambion).
The aRNA sample was vacuum dried to completion and resuspended in coupling  buffer (Ambion, Inc).
aRNA was labeled with 20,000pmol Cy Dye Post Labeling Reactive Dyes (Amersham Biosciences Corp., NJ) at room temperature for 30 mins followed by addition of hydroxylamine to 0.18M to quench unreacted dye, for 15 mins at room temperature protected from light. Labeled aRNA was purified using the RNeasy MinElute Cleanup kit (Qiagen). The labeling resulted in 30-60 dye molecules/1000nt.

extract_protocol: A total lymphocyte reference RNA was created using the total peripheral lymphocyte fraction from 20 healthy donors (10 male, 10 female) varying evenly in age from 25 to 65 years. PBMCs from these donors were obtained from the Stanford Blood Center. Granulocytes and monocytes were depleted from the PBMCs using RosetteSep depletion cocktails (Stemcell Technologies, Canada). An aliquot of the purified lymphocytes was taken for antibody staining to determine purity. The cells were incubated with fluorescently conjugated monoclonal mouse anti-human antibodies to CD3, CD56, CD16, CD8, CD4, and CD19 for 30 mins, washed, analyzed by flow cytometry (FACS Calibur, BD Biosciences) and were determined to be >99% pure lymphocytes. The remainder of the purified lymphocytes were homogenized in 10mL TRIzol plus 50μg linear acrylamide and stored at -80°C. Total DNA-free RNA was isolated. 100μg total RNA from each of the 20 healthy donor total lymphocyte samples was pooled to create the total lymphocyte reference RNA.

tag: Pooled RNA from the total peripheral lymphocyte fraction from 20 healthy donors, used as a common reference.


title: NK_cell_pool_melanoma_M11+M12


title: NK_cell_pool_melanoma_M05+M06


title: NK_cell_pool_melanoma_M07+M08


title: NK_cell_pool_melanoma_M01+M02


title: NK_cell_pool_healthy_H09+H10

tag: A pool of two pure subsets of peripheral blood CD56dim natural killer cells (CD19- CD3- CD56dim Cd16+), stringently sorted by flow cytometry, from two age and gender matched healthy donors.


title: NK_cell_pool_melanoma_M03+M04


title: NK_cell_pool_healthy_H07+H08


title: 2194


title: NK_cell_pool_healthy_H11+H12


title: NK_cell_pool_healthy_H05+H06


title: CD8_T_cell_pool_melanoma_M07+M08

tag: A pool of two pure subsets of peripheral blood CD8+ T cells (CD19- CD3+ CD4- CD8+ CD16- CD56-), stringently sorted by flow cytometry, from two age and gender matched stage IV (American Joint Committee on Cancer) melanoma patients.


title: CD8_T_cell_pool_melanoma_M09+M10


title: NK_cell_pool_healthy_H03+H04


title: CD8_T_cell_pool_melanoma_M11+M12


title: CD8_T_cell_pool_melanoma_M05+M06


title: CD8_T_cell_pool_healthy_H09+H10

tag: A pool of two pure subsets of peripheral blood CD8+ T cells (CD19- CD3+ CD4- CD8+ CD16- CD56-), stringently sorted by flow cytometry, from two age and gender matched healthy donors.


title: CD8_T_cell_pool_melanoma_M03+M04


title: NK_cell_pool_healthy_H01+H02


title: CD8_T_cell_pool_healthy_H07+H08


title: CD8_T_cell_pool_healthy_H01+H02


title: CD8_T_cell_pool_healthy_H11+H12


title: CD4_T_cell_pool_melanoma_M11+M12

tag: A pool of two pure subsets of peripheral blood CD4+ T cells (CD19- CD3+ CD4+ CD8- CD16- CD56-), stringently sorted by flow cytometry, from two age and gender matched stage IV (American Joint Committee on Cancer) melanoma patients.


title: CD4_T_cell_pool_melanoma_M05+M06


title: CD4_T_cell_pool_melanoma_M09+M10


title: CD8_T_cell_pool_healthy_H05+H06


title: CD8_T_cell_pool_healthy_H03+H04


title: CD8_T_cell_pool_melanoma_M01+M02


title: CD4_T_cell_pool_melanoma_M07+M08


title: Achis 3 ChIp chip analysis on Caco-2 cells replica 1

type: genomic

city: Copenhagen

first: Jesper

middle: T

last: Troelsen

address: Blegdamsvej 3b

country: Denmark

institute: Univ. of Copenhagen

description: Caco2 DNA

hyb_protocol: According to standard NimbleGen protocols.

data_processing: log base 2 (Rval/Gval) ratios; log2 values that have been scaled by subtracting the bi-weight mean of all experimental values from each value

molecule: genomic DNA

source_name: AcHis3 IP DNA

extract_protocol: AcHis3 bound crosslinked genomic DNA was immunopurfied from Caco2 cells and amplified before labelling and hybridisation

tag: AcHis3 IP DNA

source_name: Input genomic DNA

extract_protocol: whole genome DNA from Caco-2 cells was amplified before labelling and hybridisation

tag: whole genome DNA from Caco-2 cells


title: 5 min oxygen depletion

description: Aerobic cultures were maintained by sparging the chemostat with air (0.4 l min-1). The switch to micro-aerobic conditions was achieved by switching off the air sparging the culture. After a period of 5 min exposure to air cells were harvested directly into RNA Protect (Qiagen) to stabilize RNA before total RNA purification using Qiagen’s Rneasy Midi kit as recommended by manufacturer’s instructions. Data from control samples (aerobic) were used in indirect comparisons with 5 min, 10 min, 15 min and 60 min of oxygen depletion. Dye swaps and biological repeats were carried out giving two biological repeats and two technical repeats (see supplementary files).

data_processing: Control (aerobic) and 5 min oxygen depletion samples from two biological replicates and two dye swap experiments were compared, LOG2 LOWESS normalized data is shown.

source_name: Steady-state continuous cultured experimental samples after 5 min oxygen depletion.


title: CD4_T_cell_pool_healthy_H11+H12

tag: A pool of two pure subsets of peripheral blood CD4+ T cells (CD19- CD3+ CD4+ CD8- CD16- CD56-), stringently sorted by flow cytometry, from two age and gender matched healthy donors.


title: Achis 3 ChIp chip analysis on Caco-2 cells replica 3

description: Caco2 DNA

scan_protocol: According to standard NimbleGen protocols.


title: Achis 3 ChIp chip analysis on Caco-2 cells replica 2

description: Caco2 DNA

label_protocol: According to standard NimbleGen protocols.


title: CD4_T_cell_pool_melanoma_M03+M04


title: CD4_T_cell_pool_healthy_H01+H02


title: CD4_T_cell_pool_melanoma_M01+M02


title: B_cell_pool_healthy_H11+H12

label_protocol:
100ng total RNA from sorted cells was used as input for one round of aRNA amplification using the Amino Allyl MessageAmpTM II aRNA Amplification Kit (Ambion).
Amino-allyl-aRNA samples (2μg of each) were pooled in age and gender matched pairs. The pooled sample was vacuum dried to completion and resuspended in 8μl coupling buffer (Ambion, Inc).
aRNA was labeled with 20,000pmol Cy Dye Post Labeling Reactive Dyes  (Amersham Biosciences Corp., NJ) at room temperature for 30 mins followed by addition of hydroxylamine to 0.18M to quench unreacted dye, for 15 mins at room temperature protected from light. Labeled aRNA was purified using the RNeasy MinElute Cleanup kit (Qiagen).  The labeling resulted in 30-60 dye molecules/1000nt.

extract_protocol:
Peripheral blood mononuclear cells (PBMCs) were obtained and cryopreserved in 90% NCS 10% DMSO. Cryopreserved PBMCs were thawed, extensively washed and rested overnight in RPMI 1640 containing 10% FBS, penicillin, streptomycin and L-glutamine.
The cells were incubated with fluorescently conjugated monoclonal mouse anti-human antibodies to CD3, CD4, CD8, CD16, CD19 and CD56 (BD Biosciences and Caltag, CA) for 30 mins, washed and resuspended in RPMI 50% FBS and kept on ice. The stained cells were sorted by flow cytometry using the BD FACS Aria into CD8 T cells (CD3+ CD8+ CD4- CD19- CD56- CD16-), CD4 T cells (CD3+ CD4+ CD8- CD19- CD56- CD16-), B cells (CD19+ CD3- CD8- CD4- CD16- CD56-) and CD56dim NK cells (CD19- CD3- CD56dim CD16+). 200,000 cells were sorted into ice-cold RPMI with 50% FBS to preserve cell viability. The sorted cells were pelleted by centrifugation at 1500 rpm 5 mins, homogenized in 1mL TRIzol (Invitrogen, CA) plus 10μg linear acrylamide as a coprecipitant and stored at -80°C.
Total RNA was isolated from TRIzol homogenates according to the manufacturer’s protocol and resuspended in RNase-free water. Genomic DNA was removed using the DNA-free kit (Ambion), according to manufacturer’s protocol. RNA quantity and quality were checked using the Nanodrop ND1000A spectrophotometer (Nanodrop Technologies, DE, USA) and the RNA 6000 Pico LabChip assay using the Agilent 2100 Bioanalyzer (Agilent Technologies, CA, USA).

tag: A pool of two pure subsets of peripheral blood B cells (CD19+ CD3- CD4- CD8- CD16- CD56-), stringently sorted by flow cytometry, from two age and gender matched healthy donors.

label_protocol:
1μg total lymphocyte reference RNA was used as input for one round of aRNA amplification using the Amino Allyl MessageAmpTM II aRNA Amplification Kit (Ambion).
The aRNA sample was vacuum dried to completion and resuspended in coupling buffer (Ambion, Inc).
aRNA was labeled with 20,000pmol Cy Dye Post Labeling Reactive Dyes  (Amersham Biosciences Corp., NJ) at room temperature for 30 mins followed by addition of hydroxylamine to 0.18M to quench unreacted dye, for 15 mins at room temperature protected from light. Labeled aRNA was purified using the RNeasy MinElute Cleanup kit (Qiagen).   The labeling resulted in 30-60 dye molecules/1000nt.


title: B_cell_pool_healthy_H07+H08


title: B_cell_pool_melanoma_M07+M08

tag: A pool of two pure subsets of peripheral blood B cells (CD19+ CD3- CD4- CD8- CD16- CD56-), stringently sorted by flow cytometry, from two age and gender matched stage IV (American Joint Committee on Cancer) melanoma patients.


title: CD4_T_cell_pool_healthy_H07+H08


title: CD4_T_cell_pool_healthy_H03+H04


title: B_cell_pool_healthy_H05+H06


title: B_cell_pool_melanoma_M09+M10


title: B_cell_pool_melanoma_M01+M02


title: lung_jnk1ko_ventilation3

status: Public on May 08 2007

city: Philadelphia

first: Tamas

last: Dolinay

state: PA

address: 220 S. 33rd St., Towne building, Room 390

department: Bioengineering

institute: University of Pennsylvania

description: Total RNA extracted from lung tissue and double-standed cDNA was synthetized. This served as a template for cRNA synthesis via in vitro transcription which was performed in the presence of biotinylated nucleotides. The result is 1000 to 5000-fold lineraly amplified poly(A)+ RNA which was hybridized on bioarrays. Bioarrays are washed following hybridization and stained with cy5-Streptavidin dye. After a final wash the bioarrays are dried and scanned.

hyb_protocol: Purified cRNA was fragmented in 1× fragmentation buffer (40 mM Tris-acetate pH 7.9, 100 mM KOAc, 31.5 mM MgOAc) at 94°C for 20 minutes. 10 ug of fragmented cRNA in 260 ul of hybridization solution was added to each bioarray via the Flex Chamber port and incubated for 18 hours at 37°C, while shaking at 300 r.p.m. in shaking incubator. Samples were processed in parallel using the CodeLink Shaker Kit and CodeLink Parallel Processing Kit (Amersham Biosciences).

scan_protocol: Bioarrays were stained with Cy5™-streptavadin (Amersham Biosciences) and scanned using a GenePix 4000 B scanner (Axon Instruments).

data_processing: All arrays were normalized using CyclicLoess method (available at www.bioconductor.com). For analysis we filtered out genes that did not pass manufacturer recommendation for quality control. Genes were normalized to their controls and log2 base transformed.

source_name: mouse lung tissue

label_protocol: cRNA was prepared by in vitro transcription using a single, labeled nucleotide, biotin-11-UTP in the IVT reaction at a concentration of 1.25 mM. Unlabeled UTP was present at 3.75 mM, while GTP, ATP, and CTP were at 5 mM. The mixture was incubated at 37°C overnight for 14 hours. The labeled cRNA was then purified using an RNeasy mini kit (Qiagen).

extract_protocol: Total RNA was extracted from lung tissue with Trizol

treatment_protocol: mechanical ventilation with 10ml/kg tidal volume, with 2cmH2O PEEP for 8 hours

tag: Jnk1 knockout mouse on C57/bl6 background, male gender, 20-30g, mechanical ventilation


title: B_cell_pool_melanoma_M03+M04


title: B_cell_pool_healthy_H01+H02


title: B_cell_pool_healthy_H09+H10


title: lung_jnk1ko_ventilation4


title: B_cell_pool_melanoma_M11+M12


title: DNA cytosine methylation of Arabidopsis ec. Ler chromosome 4

city: Austin

first: Matthew

middle: Wayne

last: Vaughn

state: TX

address: 10100 Burnet Rd

department: Texas Advanced Computing Center

institute: University of Texas at Austin

description: A reference design including a dye reversal was used to examine DNA cytosine methylation on Arabidopsis chromsome 4 in the Ler ecotype. Three technically replicated dye swaps were performed for a total of 6 hybridizations.

hyb_protocol: Equal amounts of Ler DNA labeled with Cy3 or Cy5 and Ler DNA labeled with Cy5 or Cy3, respectively, were mixed for hybridization to a single array in 4X SSC and 0.2% SDS. Arrays were hybridized at 65C for 16-18 hrs, followed by 4 washes (1X SSC 0.2% SDS for 5 minutes at 42C, followed by 1X SSC at room temperature for 5 minutes and two washes in 0.1X SSC at room temperature for 2 minutes).

scan_protocol: Arrays were immediately scanned using Axon 4000 array scanner and the scans were quantified with GenePix v4.0.

data_processing:
The methylation intensity for each spot is computed by subtracting the background median intensity from the corresponding foreground median intensity for both r signals. If the foreground intensity is less than the background intensity, the methylation level is set as 1 (log-transformed intensity 0). To stabilize the variance, log2 transformation is applied to the background corrected intensities. MA plots revealed a general trend across all the slides for the Cy5 to yield higher measurements than Cy3. To correct this, a robust local regression (loess) was used to remove the unbalanced dye effect using all features on the array. After the normalization, the log-ratio, M, has a mean of approximately zero.
Methylation genomic tiling microarray data were analyzed using a linear model analysis of variance (ANOVA). Specifically, a linear model of the form
ln(Yijkmr)= µ + Ai +Di +Tk+Gm+AGim+DGjm+TGkm +εijkmr
was employed to partition the sources of variation. The natural logarithm transformed, raw, background corrected data are denoted as ln(Yijkmr). The overall mean effect is µ, and A, D, T, and G represent the array, dye, treatment, and gene (or feature) main effects, respectively. The interactions of the main effects are AG, DG, TG, and represent array by gene, dye by gene, and treatment by gene, respectively. The random error εijkmr is assumed to be normally distributed, with mean zero and constant variance. Once the sources of technical variation (e.g., global and feature-specific array and dye effects) and experimental variation (e.g., treatment and treatment by feature interaction) are estimated, differential fluorescence was tested using hypotheses that acknowledge both the average treatment effect and the treatment by feature interaction.
H0:Tk+TGkm=Tk’+TGk’m
Ha: Tk+TGkm ≠Tk’+TGk’m
Statistically significant differences were determined by evaluating signals at each tile using a one-sided t-test. 576 randomly selected tiles across chromosome 4 regions with no gene or repeat annotation were used as controls. These controls supplied an average unmethylated value against which other features on chromosome were tested using a one-sided t-test. The multiple testing issues that arise when testing 21,815 tiles across chromosome 4 the false discovery rate (FDR) were controlled at the 5% level using a Benjamini and Hochberg correction.

label: Cy5 and Cy3

organism: Arabidopsis thaliana

source_name: Digested or Undigested gDNA

label_protocol: Three micrograms of the DNA sample were labeled with Cy3 or Cy5 dyes by random priming and purified over Qiagen PCR cleanup columns according to the supplier’s protocol.

extract_protocol: Genomic DNA was extracted using Qiagen Plant DNA Easy kit from 100 14 day-old seedlings and sheared to an average size of 1-3kb using a nebulizer. DNA was digested by McrBC and run side-by-side on a small 1% agarose gel, along with a mock-treated sample of the same DNA. DNA fractions larger than 800-1000bp were cut from the gel and DNA purified using Qiagen Qiaex II resin. In this way, the McrBC-treated sample represents enrichment of un-methylated portion of the genome.

tag: Genomic DNA from Ler Arabidopsis


title: lung_jnk1ko_ventilation2


title: B_cell_pool_healthy_H03+H04


title: DNA cytosine methylation of Arabidopsis ec. Col-0 chromosome 4

description: A reference design including a dye reversal was used to examine DNA cytosine methylation on Arabidopsis chromsome 4 in the Col-o ecotype. Three technically replicated dye swaps were performed for a total of 6 hybridizations.

hyb_protocol: Equal amounts of Col DNA labeled with Cy3 or Cy5 and Ler DNA labeled with Cy5 or Cy3, respectively, were mixed for hybridization to a single array in 4X SSC and 0.2% SDS. Arrays were hybridized at 65C for 16-18 hrs, followed by 4 washes (1X SSC 0.2% SDS for 5 minutes at 42C, followed by 1X SSC at room temperature for 5 minutes and two washes in 0.1X SSC at room temperature for 2 minutes).

tag: Genomic DNA from Col-0 Arabidopsis


title: Comparative Genome Hybridization of Arabidopsis Col and Ler ecotypes

description: A reference design including a dye reversal was used to examine chromosome 4-specific genomic amplifications and deletions between Arabidopsis ecotypes Col and Ler. Three technically replicated dye swaps were performed. These DNA samples are the the same as used for the DNA cytosine methylation studies to facilitate comparison between CGH and methylation results.

hyb_protocol: Equal amounts of Col and Ler DNA labeled with Cy3 or Cy5, were mixed for hybridization to a single array in 4X SSC and 0.2% SDS. Arrays were hybridized at 65C for 16-18 hrs, followed by 4 washes (1X SSC 0.2% SDS for 5 minutes at 42C, followed by 1X SSC at room temperature for 5 minutes and two washes in 0.1X SSC at room temperature for 2 minutes).

data_processing:
The fluorescence for each spot is computed by subtracting the background median intensity from the corresponding foreground median intensity for both r signals. If the foreground intensity is less than the background intensity, the signal level is set as 1 (log-transformed intensity 0). To stabilize the variance, log2 transformation is applied to the background corrected intensities. MA plots revealed a general trend across all the slides for the Cy5 to yield higher measurements than Cy3. To correct this, a robust local regression (loess) was used to remove the unbalanced dye effect using all features on the array. After the normalization, the log-ratio, M, has a mean of approximately zero.
CGH tiling microarray data were analyzed using a linear model analysis of variance (ANOVA). Specifically, a linear model of the form
ln(Yijkmr)= µ + Ai +Di +Tk+Gm+AGim+DGjm+TGkm +εijkmr
was employed to partition the sources of variation. The natural logarithm transformed, raw, background corrected data are denoted as ln(Yijkmr). The overall mean effect is µ, and A, D, T, and G represent the array, dye, treatment, and gene (or feature) main effects, respectively. The interactions of the main effects are AG, DG, TG, and represent array by gene, dye by gene, and treatment by gene, respectively. The random error εijkmr is assumed to be normally distributed, with mean zero and constant variance. Once the sources of technical variation (e.g., global and feature-specific array and dye effects) and experimental variation (e.g., treatment and treatment by feature interaction) are estimated, differential fluorescence was tested using hypotheses that acknowledge both the average treatment effect and the treatment by feature interaction.
H0:Tk+TGkm=Tk’+TGk’m
Ha: Tk+TGkm ≠Tk’+TGk’m
Statistically significant differences were determined by evaluating signals at each tile using a two-sided t-test. The multiple testing issues that arise when testing 21,815 tiles across chromosome 4 the false discovery rate (FDR) were controlled at the 5% level using a Benjamini and Hochberg correction.

source_name: Col or Ler gDNA

extract_protocol: Genomic DNA was extracted using Qiagen Plant DNA Easy kit from 100 14 day-old seedlings and sheared to an average size of 1-3kb using a nebulizer.

tag: Genomic DNA from Col-0 or Ler Arabidopsis


title: lung_jnk1ko_control3

tag: Jnk1 knockout mouse on C57/bl6 background, male gender, 20-30g, control (no ventilation)


title: HNF4a chip chip on Caco-2 cells replica 2

description: Caco2 DNA

source_name: HNF4a IP DNA

extract_protocol: HNF4a bound crosslinked genomic DNA was immunopurfied from Caco2 cells and amplified before labelling and hybridisation

tag: HNF4a antibody IP DNA


title: lung_jnk1ko_ventilation1


title: HNF4a chip chip on Caco-2 cells replica 1

description: Caco2 DNA


title: HNF4a chip chip on Caco-2 cells replica 3

description: Caco2 DNA


title: lung_jnk1ko_control1


title: lung_jnk1ko_control2


title: lung_c57/b_ventilation4

treatment_protocol: mechanical ventilation with 10ml/kg tidal volume, with 2cmH2O PEEP, for 8 hours

tag: C57/bl6 mouse, male gender, 20-30g, ventilation


title: lung_c57/b_ventilation3

tag: C57/bl6 mouse, male gender, 20-30g, mechanical ventilation


title: lung_c47/b_ventilation2


title: lung_c57/b_control2

tag: C57/bl6 mouse, male gender, 20-30g, control (no ventilation)


title: lung_c57/b_control1


title: CD4_T_cell_pool_healthy_H09+H10

tag: Pooled RNA from the total peripheral lymphocyte fraction from 20 healthy donors, used as a common reference.


title: lung_c57/b_ventilation1


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12280339)

city: King of Prussia

first: Joel

last: Greshock

address: 2301 Renaissance Blvd.

department: Translational Medicine, Oncology

institute: GlaxoSmithKline

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 4/2/2002

hyb_protocol: DNA was resuspended and hybridized to the array for 72h at 37oC on a rotating platform. Additional details are found in: Greshock, J, Naylor, TL, Margolin, A, et al. 1-Mb resolution array-based comparative genomic hybridization using a BAC clone set optimized for cancer gene analysis. Genome Res 2004; 14: 179-87

scan_protocol: Images were scanned with an Axon 4500 microarray scanner (Axon, Union City, CA) and analyzed with GenePix 3.0 software (Axon).

data_processing: All spots were subjected to a pin-tip normalization.

label_protocol: One µg of tumor and reference DNA were labeled with Cy3 or Cy5, respectively (Amersham, Piscataway, NJ) using the BioPrime random-primed labeling kit (Invitrogen, Carlsbad, CA).  Labeled tumor and reference DNA were combined and precipitated with human Cot-1 DNA to reduce non-specific binding.

extract_protocol: Genomic DNA was isolated from frozen tumors or cultured cells by overnight digestion, phenol-chloroform extraction and ethanol precipitation.

tag: Tissue

source_name: pooled male

tag: pooled male


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12254616)

growth_protocol: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12280364)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 3/20/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12254579)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 4/9/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12254592)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 3/19/2002


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12432068)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Carcinoma, NOS; University of Pennsylvania; 9/14/2002

tag: Cell Line HCC2218


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12280299)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12280273)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 3/29/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12280275)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12254591)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 3/22/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12280534)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12280340)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12280302)


title: Breast, NOS (excludes Skin of breast C44.5), UNKNOWN TISSUE (12430039)

description: "Breast, NOS (excludes Skin of breast C44.5)"; UNKNOWN TISSUE; University of Pennsylvania; 9/14/2002

tag: Cell Line HCC202


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12254589)


title: Breast, NOS (excludes Skin of breast C44.5), UNKNOWN TISSUE (12429972)

description: "Breast, NOS (excludes Skin of breast C44.5)"; UNKNOWN TISSUE; University of Pennsylvania; 9/27/2002


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12432407)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Carcinoma, NOS; University of Pennsylvania; 9/28/2002

tag: Cell Line HCC1954


title: lung_c57/b_control3


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12280336)


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12518651)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Carcinoma, NOS; University of Pennsylvania; 1/6/2003

tag: Cell Line HCC1599


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12432351)

growth_protocol: "Breast, NOS (excludes Skin of breast C44.5)"; Carcinoma, NOS

tag: Cell Line HCC1937


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12522229)


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12409526)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Carcinoma, NOS; University of Pennsylvania; 9/6/2002

tag: Cell Line HCC1569


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12409972)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Carcinoma, NOS; University of Pennsylvania; 9/11/2002


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12409973)

tag: Cell Line HCC1419


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12409528)

tag: Cell Line HCC1395


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12405432)


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12409527)


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12410062)

tag: Cell Line HCC1187


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12409965)


title: Breast, NOS (excludes Skin of breast C44.5), Infiltrating duct carcinoma (C50._) (12405745)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Infiltrating duct carcinoma (C50._); University of Pennsylvania; 9/5/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12429987)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 10/1/2002


title: Breast, NOS (excludes Skin of breast C44.5), Infiltrating duct and lobular carcinoma (C50._) (12430062)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Infiltrating duct and lobular carcinoma (C50._); University of Pennsylvania; 9/17/2002


title: Unknown primary site, Embryonal rhabdomyosarcoma (12522300)

description: Unknown primary site; Embryonal rhabdomyosarcoma; University of Pennsylvania; 1/21/2003


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12409975)


title: Unknown primary site, Alveolar rhabdomyosarcoma (12533157)

description: Unknown primary site; Alveolar rhabdomyosarcoma; University of Pennsylvania; 5/30/2003


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12430025)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 10/8/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12409352)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 9/5/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12405433)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 9/14/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432070)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 9/17/2002


title: Kidney, NOS, Liposarcoma, NOS (12552641)

description: "Kidney, NOS"; Liposarcoma, NOS; University of Pennsylvania; 6/9/2003

growth_protocol: "Kidney, NOS"; Liposarcoma, NOS


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432148)


title: Breast, NOS (excludes Skin of breast C44.5), UNKNOWN TISSUE (12521793)

description: "Breast, NOS (excludes Skin of breast C44.5)"; UNKNOWN TISSUE; University of Pennsylvania; 1/6/2003


title: Breast, NOS (excludes Skin of breast C44.5), Infiltrating duct and lobular carcinoma (C50._) (12430061)

growth_protocol: "Breast, NOS (excludes Skin of breast C44.5)"; Infiltrating duct and lobular carcinoma (C50._)


title: Breast, NOS (excludes Skin of breast C44.5), UNKNOWN TISSUE (12429830)

description: "Breast, NOS (excludes Skin of breast C44.5)"; UNKNOWN TISSUE; University of Pennsylvania; 10/4/2002


title: Unknown primary site, Alveolar rhabdomyosarcoma (12538948)

growth_protocol: Unknown primary site; Alveolar rhabdomyosarcoma


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12538546)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 6/10/2003

source_name: pooled female

tag: pooled female


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432332)


title: Unknown primary site, Alveolar rhabdomyosarcoma (12518299)

description: Unknown primary site; Alveolar rhabdomyosarcoma; University of Pennsylvania; 1/13/2003


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432307)


title: Breast, NOS (excludes Skin of breast C44.5), Infiltrating Tubulolobular Carcinoma (12430085)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Infiltrating Tubulolobular Carcinoma; University of Pennsylvania; 10/8/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12430013)


title: Kidney, NOS, Leiomyosarcoma, NOS (12599143)

description: "Kidney, NOS"; Leiomyosarcoma, NOS; University of Pennsylvania; 6/30/2003

growth_protocol: "Kidney, NOS"; Leiomyosarcoma, NOS

source_name: pooled male v2

tag: pooled male v2


title: Unknown primary site, Alveolar rhabdomyosarcoma (12522282)

description: Unknown primary site; Alveolar rhabdomyosarcoma; University of Pennsylvania; 1/21/2003


title: Kidney, NOS, Liposarcoma, NOS (12602234)

description: "Kidney, NOS"; Liposarcoma, NOS; University of Pennsylvania; 6/20/2003


title: Breast, NOS (excludes Skin of breast C44.5), UNKNOWN TISSUE (12430189)

description: "Breast, NOS (excludes Skin of breast C44.5)"; UNKNOWN TISSUE; University of Pennsylvania; 9/26/2002


title: Unknown primary site, Osteosarcoma, NOS (C40._, C41._) (12533021)

description: Unknown primary site; Osteosarcoma, NOS (C40._, C41._); University of Pennsylvania; 4/28/2003


title: Unknown primary site, Embryonal rhabdomyosarcoma (12518661)

description: Unknown primary site; Embryonal rhabdomyosarcoma; University of Pennsylvania; 1/21/2003


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432336)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12429774)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 10/4/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12533130)


title: Kidney, NOS, Liposarcoma, NOS (12602359)


title: Breast, NOS (excludes Skin of breast C44.5), UNKNOWN TISSUE (12518650)

growth_protocol: "Breast, NOS (excludes Skin of breast C44.5)"; UNKNOWN TISSUE


title: Femur, Osteosarcoma, NOS (C40._, C41._) (12533328)

description: Femur; Osteosarcoma, NOS (C40._, C41._); University of Pennsylvania; 4/28/2003

growth_protocol: Femur; Osteosarcoma, NOS (C40._, C41._)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432143)


title: Kidney, NOS, Leiomyosarcoma, NOS (12599150)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12602215)


title: Unknown primary site, Hemangiosarcoma (12553386)

description: Unknown primary site; Hemangiosarcoma; University of Pennsylvania; 5/12/2003

growth_protocol: Unknown primary site; Hemangiosarcoma


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432305)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 10/8/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12430229)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 9/17/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432161)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 10/1/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12409964)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 9/5/2002


title: Femur, Osteosarcoma, NOS (C40._, C41._) (12553567)


title: Breast, NOS (excludes Skin of breast C44.5), Infiltrating duct and lobular carcinoma (C50._) (12432096)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Infiltrating duct and lobular carcinoma (C50._); University of Pennsylvania; 10/1/2002


title: Unknown primary site, Alveolar rhabdomyosarcoma (12522283)


title: Breast, NOS (excludes Skin of breast C44.5), DCIS, NOS (C50._) (12432348)

description: "Breast, NOS (excludes Skin of breast C44.5)"; DCIS, NOS (C50._); University of Pennsylvania; 10/4/2002


title: thigh, connective and soft tissues of, Leiomyosarcoma, NOS (12556330)

description: "thigh, connective and soft tissues of"; Leiomyosarcoma, NOS; University of Pennsylvania; 5/12/2003


title: Unknown primary site, Hemangiosarcoma (12553387)


title: Breast, NOS (excludes Skin of breast C44.5), UNKNOWN TISSUE (12429832)

description: "Breast, NOS (excludes Skin of breast C44.5)"; UNKNOWN TISSUE; University of Pennsylvania; 10/4/2002


title: Breast, NOS (excludes Skin of breast C44.5), DCIS, NOS (C50._) (12432353)

growth_protocol: "Breast, NOS (excludes Skin of breast C44.5)"; DCIS, NOS (C50._)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432304)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432124)


title: Breast, NOS (excludes Skin of breast C44.5), Infiltrating duct and lobular carcinoma (C50._) (12430037)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Infiltrating duct and lobular carcinoma (C50._); University of Pennsylvania; 9/17/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432088)


title: Unknown primary site, Alveolar rhabdomyosarcoma (12518440)

description: Unknown primary site; Alveolar rhabdomyosarcoma; University of Pennsylvania; 1/21/2003


title: Unknown primary site, Chondrosarcoma, NOS (C40._, C41._) (12553385)

description: Unknown primary site; Chondrosarcoma, NOS (C40._, C41._); University of Pennsylvania; 5/12/2003


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432335)


title: Breast, NOS (excludes Skin of breast C44.5), Infiltrating duct carcinoma (C50._) (12409983)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Infiltrating duct carcinoma (C50._); University of Pennsylvania; 9/5/2002


title: Unknown primary site, Chondrosarcoma, NOS (C40._, C41._) (12539010)

growth_protocol: Unknown primary site; Chondrosarcoma, NOS (C40._, C41._)


title: Unknown primary site, Embryonal rhabdomyosarcoma (12518445)

description: Unknown primary site; Embryonal rhabdomyosarcoma; University of Pennsylvania; 1/27/2003


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432091)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12430107)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 9/14/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432361)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432163)


title: Unknown primary site, Alveolar rhabdomyosarcoma (12522302)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12430228)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12430109)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432144)


title: Kidney, NOS, Liposarcoma, NOS (12599115)

description: "Kidney, NOS"; Liposarcoma, NOS; University of Pennsylvania; 6/30/2003


title: Kidney, NOS, Liposarcoma, NOS (12602241)

description: "Kidney, NOS"; Liposarcoma, NOS; University of Pennsylvania; 6/20/2003


title: Unknown primary site, Alveolar rhabdomyosarcoma (12522276)

description: Unknown primary site; Alveolar rhabdomyosarcoma; University of Pennsylvania; 1/13/2003


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12556795)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 6/3/2003


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12538548)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 6/10/2003


title: Unknown primary site, Osteosarcoma, NOS (C40._, C41._) (12553563)

description: Unknown primary site; Osteosarcoma, NOS (C40._, C41._); University of Pennsylvania; 4/28/2003


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12538549)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432089)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 10/1/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12518290)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 1/6/2003


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12430227)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 9/17/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432608)


title: Breast, NOS (excludes Skin of breast C44.5), Infiltrating lobular carcinoma (C50._) (12429829)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Infiltrating lobular carcinoma (C50._); University of Pennsylvania; 10/4/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12430110)


title: Breast, NOS (excludes Skin of breast C44.5), UNKNOWN TISSUE (12518654)

description: "Breast, NOS (excludes Skin of breast C44.5)"; UNKNOWN TISSUE; University of Pennsylvania; 1/6/2003


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12538550)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12429988)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 10/8/2002


title: Kidney, NOS, Leiomyosarcoma, NOS (12602233)

description: "Kidney, NOS"; Leiomyosarcoma, NOS; University of Pennsylvania; 6/20/2003


title: Breast, NOS (excludes Skin of breast C44.5), UNKNOWN TISSUE (12430083)

description: "Breast, NOS (excludes Skin of breast C44.5)"; UNKNOWN TISSUE; University of Pennsylvania; 10/8/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12432333)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12430084)


title: Breast, NOS (excludes Skin of breast C44.5), Infiltrating lobular carcinoma (C50._) (12429773)

growth_protocol: "Breast, NOS (excludes Skin of breast C44.5)"; Infiltrating lobular carcinoma (C50._)


title: Breast, NOS (excludes Skin of breast C44.5), Infiltrating Tubulolobular Carcinoma (12430024)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Infiltrating Tubulolobular Carcinoma; University of Pennsylvania; 10/8/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12533128)


title: Kidney, NOS, Liposarcoma, NOS (12556788)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12429772)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 10/4/2002


title: thigh, connective and soft tissues of, Leiomyosarcoma, NOS (12557768)

description: "thigh, connective and soft tissues of"; Leiomyosarcoma, NOS; University of Pennsylvania; 5/12/2003


title: Breast, NOS (excludes Skin of breast C44.5), Infiltrating duct and lobular carcinoma (C50._) (12430106)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Infiltrating duct and lobular carcinoma (C50._); University of Pennsylvania; 9/17/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12409963)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 9/5/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12409534)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 8/11/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12538572)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 6/27/2003


title: Ovary, Cancer (12556324)

description: Ovary; Cancer; University of Pennsylvania; 5/16/2003

growth_protocol: Ovary; Cancer


title: Unknown primary site, Embryonal rhabdomyosarcoma (12521791)

description: Unknown primary site; Embryonal rhabdomyosarcoma; University of Pennsylvania; 1/27/2003


title: Ovary, Cancer (12556325)


title: Ovary, Cancer (12538996)

description: Ovary; Cancer; University of Pennsylvania; 5/13/2003


title: Ovary, Cancer (12538998)


title: Ovary, Cancer (12552624)


title: Ovary, Cancer (12556241)


title: Ovary, Cancer (12556168)


title: Unknown primary site, Alveolar rhabdomyosarcoma (12533160)

description: Unknown primary site; Alveolar rhabdomyosarcoma; University of Pennsylvania; 5/30/2003


title: Ovary, Cancer (12533082)


title: Unknown primary site, Alveolar rhabdomyosarcoma (12538958)


title: Testis, NOS, Embryonal rhabdomyosarcoma (12735456)

description: "Testis, NOS"; Embryonal rhabdomyosarcoma; University of Pennsylvania; 10/21/2003

source_name: pooled reference

tag: pooled reference


title: Testis, NOS, Embryonal rhabdomyosarcoma (12709104)

description: "Testis, NOS"; Embryonal rhabdomyosarcoma; University of Pennsylvania; 10/24/2003


title: Testis, NOS, Embryonal rhabdomyosarcoma (12709066)

growth_protocol: "Testis, NOS"; Embryonal rhabdomyosarcoma


title: Jugular lymph node, Embryonal rhabdomyosarcoma (12734797)

description: Jugular lymph node; Embryonal rhabdomyosarcoma; University of Pennsylvania; 10/21/2003


title: Ovary, Cancer (12556328)


title: Ovary, Cancer (12556240)


title: Ovary, Cancer (12552768)


title: Nasopharyngeal wall, Embryonal rhabdomyosarcoma (12735532)

description: Nasopharyngeal wall; Embryonal rhabdomyosarcoma; University of Pennsylvania; 10/24/2003


title: Ovary, Cancer (12538901)


title: Nasopharyngeal wall, Embryonal rhabdomyosarcoma (12708894)

growth_protocol: Nasopharyngeal wall; Embryonal rhabdomyosarcoma


title: Pelvis, NOS, Embryonal rhabdomyosarcoma (12709278)

description: "Pelvis, NOS"; Embryonal rhabdomyosarcoma; University of Pennsylvania; 10/24/2003


title: Pelvis, NOS, Embryonal rhabdomyosarcoma (12734894)

growth_protocol: "Pelvis, NOS"; Embryonal rhabdomyosarcoma


title: Testis, NOS, Embryonal rhabdomyosarcoma (12709085)


title: Ovary, Cancer (12538464)


title: Abdominal wall, NOS, Embryonal rhabdomyosarcoma (12735458)

description: "Abdominal wall, NOS"; Embryonal rhabdomyosarcoma; University of Pennsylvania; 10/21/2003


title: Ovary, Cancer (12533083)


title: Testis, NOS, Embryonal rhabdomyosarcoma (12735453)


title: Jugular lymph node, Embryonal rhabdomyosarcoma (12735808)

growth_protocol: Jugular lymph node; Embryonal rhabdomyosarcoma


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12522227)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 1/6/2003


title: Abdomen, NOS, Melanoma, NOS (12432238)

description: "Abdomen, NOS"; Melanoma, NOS; University of Pennsylvania; 10/9/2002

growth_protocol: "Abdomen, NOS"; Melanoma, NOS

tag: Cell Line WM 983A

source_name: female

tag: female


title: Abdomen, NOS, Melanoma, NOS (12432237)


title: Prostate, NOS, Embryonal rhabdomyosarcoma (12708896)

description: "Prostate, NOS"; Embryonal rhabdomyosarcoma; University of Pennsylvania; 10/24/2003


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12518291)

growth_protocol: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12522214)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS; University of Pennsylvania; 2/1/2003

tag: Cell Line WM 51


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (13238507)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS; University of Pennsylvania; 7/22/2005

tag: Cell Line WM 902 B


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12709675)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS; University of Pennsylvania; 10/31/2003

tag: Cell Line WM 47


title: Abdominal wall, NOS, Embryonal rhabdomyosarcoma (12735482)

description: "Abdominal wall, NOS"; Embryonal rhabdomyosarcoma; University of Pennsylvania; 10/24/2003

tag: Tissue


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12521829)

growth_protocol: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12254539)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS; University of Pennsylvania; 2/15/2002

tag: Cell Line WM 39


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12709676)


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (13235986)


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (13235985)


title: Skin of back, Superficial spreading melanoma (C44._) (12709673)

description: Skin of back; Superficial spreading melanoma (C44._); University of Pennsylvania; 10/31/2003

tag: Cell Line WM 46


title: Skin of back, Superficial spreading melanoma (C44._) (12709674)

growth_protocol: Skin of back; Superficial spreading melanoma (C44._)


title: Axillary lymph node, Melanoma, NOS (12521826)

description: Axillary lymph node; Melanoma, NOS; University of Pennsylvania; 1/31/2003

growth_protocol: Axillary lymph node; Melanoma, NOS

tag: Cell Line Wm 858

tag: pooled male


title: Tibia, Chondroblastic osteosarcoma (C40._, C41._) (12429839)

description: Tibia; Chondroblastic osteosarcoma (C40._, C41._); University of Pennsylvania; 11/19/2002


title: Skin of back, Superficial spreading melanoma (C44._) (12522215)

description: Skin of back; Superficial spreading melanoma (C44._); University of Pennsylvania; 2/1/2003

tag: Cell Line WM 75


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (13235987)


title: Abdominal wall, NOS, Embryonal rhabdomyosarcoma (12734796)

growth_protocol: "Abdominal wall, NOS"; Embryonal rhabdomyosarcoma


title: Axillary lymph node, Melanoma, NOS (12518625)


title: Skin of back, Superficial spreading melanoma (C44._) (12522216)


title: Axillary lymph node, Melanoma, NOS (12709620)

description: Axillary lymph node; Melanoma, NOS; University of Pennsylvania; 10/31/2003

tag: Cell Line WM 9


title: Skin of scalp and neck, Superficial spreading melanoma (C44._) (13235982)

description: Skin of scalp and neck; Superficial spreading melanoma (C44._); University of Pennsylvania; 7/22/2005

tag: Cell Line WM 35


title: Abdominal wall, NOS, Embryonal rhabdomyosarcoma (12734895)


title: Skin of scalp and neck, Superficial spreading melanoma (C44._) (13235984)

growth_protocol: Skin of scalp and neck; Superficial spreading melanoma (C44._)


title: Axillary lymph node, Melanoma, NOS (12709658)


title: Skin of back, Superficial spreading melanoma (C44._) (12773450)

description: Skin of back; Superficial spreading melanoma (C44._); University of Pennsylvania; 1/20/2004

tag: Cell Line WM 1789


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12776001)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS; University of Pennsylvania; 1/13/2004

tag: Cell Line WM 1799


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12776219)

tag: Cell Line WM 3060


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12765824)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS; University of Pennsylvania; 1/20/2004

tag: Cell Line WM 1727A

tag: pooled reference


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12773264)

tag: Cell Line WM 3077


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Nodular melanoma (C44._) (13426503)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Nodular melanoma (C44._); University of Pennsylvania; 6/6/2006

tag: Cell Line WM 278


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12776218)


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12765997)


title: Buttock, NOS, Superficial spreading melanoma (C44._) (13238513)

description: "Buttock, NOS"; Superficial spreading melanoma (C44._); University of Pennsylvania; 7/22/2005

tag: Cell Line WM 1552


title: Ovary, Carcinoma, NOS (12409515)

description: Ovary; Carcinoma, NOS; University of Pennsylvania; 8/27/2002

growth_protocol: Ovary; Carcinoma, NOS

tag: Cell Line SW626


title: Unknown primary site, Rhabdomyosarcoma, NOS (12556392)

description: Unknown primary site; Rhabdomyosarcoma, NOS; University of Pennsylvania; 6/3/2003

tag: Cell Line TUR


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12776015)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS; University of Pennsylvania; 6/14/1905


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Nodular melanoma (C44._) (13426310)

growth_protocol: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Nodular melanoma (C44._)


title: Breast, NOS (excludes Skin of breast C44.5), Infiltrating duct carcinoma (C50._) (12552615)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Infiltrating duct carcinoma (C50._); University of Pennsylvania; 6/30/2003

tag: Cell Line T47D

tag: pooled female


title: Breast, NOS (excludes Skin of breast C44.5), Infiltrating duct carcinoma (C50._) (12409986)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Infiltrating duct carcinoma (C50._); University of Pennsylvania; 8/30/2002


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12432552)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Carcinoma, NOS; University of Pennsylvania; 9/27/2002

tag: Cell Line SKBR3


title: Muscle, NOS, connective and soft tissues of, Rhabdomyosarcoma, NOS (12556636)

description: "Muscle, NOS, connective and soft tissues of"; Rhabdomyosarcoma, NOS; University of Pennsylvania; 6/3/2003

tag: Cell Line RH36

tag: pooled male


title: Lymph node, NOS, Nodular melanoma (C44._) (12735383)

description: "Lymph node, NOS"; Nodular melanoma (C44._); University of Pennsylvania; 10/31/2003

tag: Cell Line WM 164


title: Skin of back, Superficial spreading melanoma (C44._) (12776084)


title: Breast, NOS (excludes Skin of breast C44.5), Infiltrating duct carcinoma (C50._) (12556411)

growth_protocol: "Breast, NOS (excludes Skin of breast C44.5)"; Infiltrating duct carcinoma (C50._)


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12432240)

growth_protocol: "Breast, NOS (excludes Skin of breast C44.5)"; Carcinoma, NOS


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12552620)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS; University of Pennsylvania; 5/9/2003

tag: Cell Line SbCl2


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12709677)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS; University of Pennsylvania; 10/31/2003

tag: Cell Line WM 122


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12735382)


title: Lymph node, NOS, Nodular melanoma (C44._) (12735385)

growth_protocol: "Lymph node, NOS"; Nodular melanoma (C44._)


title: Ovary, Carcinoma, NOS (12410038)


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12538453)


title: Buttock, NOS, Superficial spreading melanoma (C44._) (13238512)

growth_protocol: "Buttock, NOS"; Superficial spreading melanoma (C44._)


title: Muscle, NOS, connective and soft tissues of, Rhabdomyosarcoma, NOS (12308658)

description: "Muscle, NOS, connective and soft tissues of"; Rhabdomyosarcoma, NOS; University of Pennsylvania; 7/22/2002

tag: Cell Line RH18C


title: Muscle, NOS, connective and soft tissues of, Rhabdomyosarcoma, NOS (12521790)

description: "Muscle, NOS, connective and soft tissues of"; Rhabdomyosarcoma, NOS; University of Pennsylvania; 1/13/2003

tag: Cell Line RH30SJ


title: Ovary, Teratocarcinoma (12409516)

description: Ovary; Teratocarcinoma; University of Pennsylvania; 8/27/2002

growth_protocol: Ovary; Teratocarcinoma

tag: Cell Line PA-1


title: Kidney, NOS, Liposarcoma, NOS (12533029)

description: "Kidney, NOS"; Liposarcoma, NOS; University of Pennsylvania; 6/13/2003

growth_protocol: "Kidney, NOS"; Liposarcoma, NOS

tag: Cell Line RD


title: Muscle, NOS, connective and soft tissues of, Rhabdomyosarcoma, NOS (12518298)

growth_protocol: "Muscle, NOS, connective and soft tissues of"; Rhabdomyosarcoma, NOS


title: Muscle, NOS, connective and soft tissues of, Rhabdomyosarcoma, NOS (12538500)

description: "Muscle, NOS, connective and soft tissues of"; Rhabdomyosarcoma, NOS; University of Pennsylvania; 6/13/2003

tag: Cell Line RH30


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12429931)

tag: Cell Line MDA-MB-415


title: Muscle, NOS, connective and soft tissues of, Rhabdomyosarcoma, NOS (12533131)


title: Muscle, NOS, connective and soft tissues of, Rhabdomyosarcoma, NOS (12409824)

description: "Muscle, NOS, connective and soft tissues of"; Rhabdomyosarcoma, NOS; University of Pennsylvania; 8/10/2002


title: Ovary, Carcinoma, NOS (13268469)

description: Ovary; Carcinoma, NOS; University of Pennsylvania; 9/16/2005

tag: Cell Line OVCAR4

tag: pooled reference


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12429930)


title: Muscle, NOS, connective and soft tissues of, Rhabdomyosarcoma, NOS (12538547)


title: Ovary, Carcinoma, NOS (13268466)


title: Breast, NOS (excludes Skin of breast C44.5), Adenocarcinoma, NOS (12552619)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Adenocarcinoma, NOS; University of Pennsylvania; 6/30/2003

tag: Cell Line MDA-MB-361

source_name: Pooled male

tag: Pooled male


title: Ovary, Teratocarcinoma (12405415)


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12556412)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Carcinoma, NOS; University of Pennsylvania; 6/30/2003

tag: Cell Line MDA-MB-134-VI

tag: pooled female


title: Breast, NOS (excludes Skin of breast C44.5), Adenocarcinoma, NOS (12556461)

growth_protocol: "Breast, NOS (excludes Skin of breast C44.5)"; Adenocarcinoma, NOS


title: Ovary, Carcinoma, NOS (12405416)

description: Ovary; Carcinoma, NOS; University of Pennsylvania; 8/27/2002

tag: Cell Line Kuramochi


title: Ovary, Carcinoma, NOS (12409890)

tag: pooled male


title: Breast, NOS (excludes Skin of breast C44.5), Adenocarcinoma, NOS (12409349)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Adenocarcinoma, NOS; University of Pennsylvania; 8/30/2002


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12556413)

tag: Cell Line MDA-MB-157


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12405435)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Carcinoma, NOS; University of Pennsylvania; 9/14/2002


title: Bone, NOS, Osteosarcoma, NOS (C40._, C41._) (12409892)

description: "Bone, NOS"; Osteosarcoma, NOS (C40._, C41._); University of Pennsylvania; 9/21/2002

tag: Cell Line KHOS-NP


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12538575)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Carcinoma, NOS; University of Pennsylvania; 6/27/2003


title: Breast, NOS (excludes Skin of breast C44.5), Carcinoma, NOS (12552618)


title: Bone, NOS, Osteosarcoma, NOS (C40._, C41._) (12409889)

growth_protocol: "Bone, NOS"; Osteosarcoma, NOS (C40._, C41._)


title: Bone, NOS, Osteosarcoma, NOS (C40._, C41._) (12538957)

description: "Bone, NOS"; Osteosarcoma, NOS (C40._, C41._); University of Pennsylvania; 4/28/2003

tag: Cell Line KHOS-240S


title: Bone, NOS, Osteosarcoma, NOS (C40._, C41._) (12553644)


title: Unknown primary site, Malignant melanoma, NOS (13111090)

description: Unknown primary site; Malignant melanoma, NOS; University of Pennsylvania; 1/11/2005

tag: Tissue


title: Unknown primary site, Melanoma, NOS (13111679)

description: Unknown primary site; Melanoma, NOS; University of Pennsylvania; 1/11/2005

growth_protocol: Unknown primary site; Melanoma, NOS


title: Unknown primary site, Malignant melanoma, NOS (13111089)

growth_protocol: Unknown primary site; Malignant melanoma, NOS


title: Unknown primary site, Malignant melanoma, NOS (13111678)


title: Unknown primary site, Melanoma, NOS (13111053)

description: Unknown primary site; Melanoma, NOS; University of Pennsylvania; 11/14/2005


title: Unknown primary site, Melanoma, NOS (13111056)

description: Unknown primary site; Melanoma, NOS; University of Pennsylvania; 1/14/2005


title: Unknown primary site, Melanoma, NOS (13111052)


title: Unknown primary site, Malignant melanoma, NOS (13108234)

description: Unknown primary site; Malignant melanoma, NOS; University of Pennsylvania; 1/14/2005


title: Unknown primary site, Melanoma, NOS (13111054)


title: Unknown primary site, Melanoma, NOS (13111055)


title: Unknown primary site, Melanoma, NOS (13108231)


title: Unknown primary site, Malignant melanoma, NOS (13108232)


title: Unknown primary site, Malignant melanoma, NOS (12934565)

description: Unknown primary site; Malignant melanoma, NOS; University of Pennsylvania; 8/27/2004


title: Unknown primary site, Malignant melanoma, NOS (13111088)


title: Unknown primary site, Malignant melanoma, NOS (12934187)


title: Unknown primary site, Malignant melanoma, NOS (12934186)


title: Unknown primary site, Malignant melanoma, NOS (12934566)


title: Unknown primary site, Melanoma, NOS (13111677)


title: Unknown primary site, Malignant melanoma, NOS (12934569)


title: Unknown primary site, Malignant melanoma, NOS (12933428)

description: Unknown primary site; Malignant melanoma, NOS; University of Pennsylvania; 8/17/2004


title: Unknown primary site, Malignant melanoma, NOS (12934568)


title: Unknown primary site, Melanoma, NOS (12933426)

description: Unknown primary site; Melanoma, NOS; University of Pennsylvania; 8/17/2004


title: Unknown primary site, Malignant melanoma, NOS (12934185)


title: Unknown primary site, Malignant melanoma, NOS (12933360)

description: Unknown primary site; Malignant melanoma, NOS; University of Pennsylvania; 8/31/2004


title: Unknown primary site, Malignant melanoma, NOS (12934184)


title: Unknown primary site, Malignant melanoma, NOS (12934567)


title: Unknown primary site, Melanoma, NOS (12933425)


title: Unknown primary site, Malignant melanoma, NOS (12933427)


title: Unknown primary site, Melanoma, NOS (12933611)

description: Unknown primary site; Melanoma, NOS; University of Pennsylvania; 8/13/2004


title: Unknown primary site, Malignant melanoma, NOS (12933366)


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12891302)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS; University of Pennsylvania; 3/30/2004


title: Unknown primary site, Malignant melanoma, NOS (12934188)


title: Unknown primary site, Melanoma, NOS (12933612)


title: Unknown primary site, Malignant melanoma, NOS (12933357)


title: Unknown primary site, Malignant melanoma, NOS (12933356)


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12885909)

growth_protocol: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS


title: Ovary, Carcinoma, NOS (13078390)

description: Ovary; Carcinoma, NOS; University of Pennsylvania; 12/10/2004


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12885891)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS; University of Pennsylvania; 3/26/2004


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12885911)


title: Ovary, Carcinoma, NOS (13077968)

description: Ovary; Carcinoma, NOS; University of Pennsylvania; 11/30/2004


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12885908)


title: Ovary, Carcinoma, NOS (13111484)

description: Ovary; Carcinoma, NOS; University of Pennsylvania; 2/18/2005


title: Ovary, Carcinoma, NOS (13077967)


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12885894)


title: Ovary, Carcinoma, NOS (12891504)

description: Ovary; Carcinoma, NOS; University of Pennsylvania; 4/16/2004


title: Ovary, Carcinoma, NOS (13077966)


title: Ovary, Carcinoma, NOS (12891255)


title: Ovary, Carcinoma, NOS (12891078)

description: Ovary; Carcinoma, NOS; University of Pennsylvania; 4/9/2004


title: Ovary, Carcinoma, NOS (12891063)


title: Ovary, Carcinoma, NOS (12891238)


title: Ovary, Carcinoma, NOS (12891066)


title: Ovary, Carcinoma, NOS (12891067)


title: Ovary, Carcinoma, NOS (12891240)


title: Ovary, Granular cell tumor, NOS (12891121)

description: Ovary; Granular cell tumor, NOS; University of Pennsylvania; 4/23/2004

growth_protocol: Ovary; Granular cell tumor, NOS


title: Ovary, Carcinoma, NOS (12891065)


title: Ovary, Carcinoma, NOS (12886666)


title: Ovary, Granular cell tumor, NOS (12886632)


title: Ovary, Carcinoma, NOS (12891052)


title: Ovary, Carcinoma, NOS (12891077)


title: Ovary, Carcinoma, NOS (12886670)


title: Ovary, Cancer (12886630)

description: Ovary; Cancer; University of Pennsylvania; 4/23/2004

growth_protocol: Ovary; Cancer


title: Ovary, Cancer (12886631)


title: Ovary, Cancer (12886627)


title: Ovary, Carcinoma, NOS (12886609)


title: Ovary, UNKNOWN TISSUE (12886543)

description: Ovary; UNKNOWN TISSUE; University of Pennsylvania; 4/23/2004

growth_protocol: Ovary; UNKNOWN TISSUE


title: Ovary, Carcinoma, NOS (12886591)

description: Ovary; Carcinoma, NOS; University of Pennsylvania; 4/1/2004

growth_protocol: Ovary; Carcinoma, NOS


title: Ovary, Cancer (12886502)

description: Ovary; Cancer; University of Pennsylvania; 4/16/2004


title: Ovary, Cancer (12886395)


title: Ovary, Carcinoma, NOS (12886620)


title: Ovary, Carcinoma, NOS (12886582)


title: Ovary, Cancer (12885532)

description: Ovary; Cancer; University of Pennsylvania; 3/26/2004


title: Ovary, Carcinoma, NOS (12844045)

description: Ovary; Carcinoma, NOS; University of Pennsylvania; 3/18/2004


title: Ovary, Carcinoma, NOS (12844161)


title: Ovary, Carcinoma, NOS (12843794)


title: Ovary, UNKNOWN TISSUE (12886542)


title: Ovary, Carcinoma, NOS (12837977)


title: Ovary, Carcinoma, NOS (12843876)


title: Ovary, Carcinoma, NOS (12844177)


title: Ovary, Cancer (12886546)


title: Ovary, Cancer (12885531)


title: Ovary, Carcinoma, NOS (12837976)


title: Ovary, Carcinoma, NOS (12843835)


title: Ovary, Carcinoma, NOS (12837847)


title: Ovary, Carcinoma, NOS (12886618)


title: Ovary, Carcinoma, NOS (12843793)


title: Ovary, Carcinoma, NOS (12844041)


title: Ovary, Carcinoma, NOS (12843791)


title: Ovary, Carcinoma, NOS (12843834)


title: Ovary, Carcinoma, NOS (12843873)


title: Ovary, Carcinoma, NOS (12837846)


title: Ovary, Carcinoma, NOS (12837845)


title: Ovary, Carcinoma, NOS (12776149)

description: Ovary; Carcinoma, NOS; University of Pennsylvania; 2/6/2004


title: Ovary, Carcinoma, NOS (12773673)

description: Ovary; Carcinoma, NOS; University of Pennsylvania; 2/27/2004


title: Ovary, Adenocarcinoma, NOS (12776103)

description: Ovary; Adenocarcinoma, NOS; University of Pennsylvania; 12/16/2003

growth_protocol: Ovary; Adenocarcinoma, NOS


title: Ovary, Carcinoma, NOS (12773591)


title: Ovary, Carcinoma, NOS (12773675)


title: Ovary, Carcinoma, NOS (12776147)


title: Ovary, Carcinoma, NOS (12773672)


title: Ovary, Carcinoma, NOS (12773438)


title: Ovary, Adenocarcinoma, NOS (12776101)


title: Ovary, Carcinoma, NOS (12773435)


title: Ovary, Carcinoma, NOS (12773530)


title: Ovary, Carcinoma, NOS (12773436)


title: Ovary, Carcinoma, NOS (12773573)


title: Ovary, Carcinoma, NOS (12773593)


title: Ovary, Carcinoma, NOS (12773437)


title: Ovary, UNKNOWN TISSUE (12773398)

description: Ovary; UNKNOWN TISSUE; University of Pennsylvania; 1/30/2004


title: Ovary, UNKNOWN TISSUE (12768459)

description: Ovary; UNKNOWN TISSUE; University of Pennsylvania; 12/12/2003


title: Ovary, Carcinoma, NOS (12773311)


title: Ovary, UNKNOWN TISSUE (12773401)


title: Ovary, Adenocarcinoma, metastatic, NOS (12773330)

description: Ovary; Adenocarcinoma, metastatic, NOS; University of Pennsylvania; 12/16/2003

growth_protocol: Ovary; Adenocarcinoma, metastatic, NOS


title: Ovary, Adenocarcinoma, NOS (12765995)

description: Ovary; Adenocarcinoma, NOS; University of Pennsylvania; 1/16/2004


title: Ovary, UNKNOWN TISSUE (12768528)


title: Ovary, Carcinoma, NOS (12773351)


title: Ovary, Adenocarcinoma, NOS (12773206)


title: Ovary, Carcinoma, NOS (12773348)


title: Ovary, UNKNOWN TISSUE (12773397)


title: Ovary, Adenocarcinoma, NOS (12765994)


title: Ovary, Adenocarcinoma, metastatic, NOS (12773222)


title: Ovary, UNKNOWN TISSUE (12773399)


title: Ovary, Adenocarcinoma, NOS (12765993)


title: Ovary, Adenocarcinoma, NOS (12765864)


title: Ovary, UNKNOWN TISSUE (12735785)


title: Ovary, Carcinoma, NOS (12765880)


title: Ovary, UNKNOWN TISSUE (12735784)


title: Ovary, Cancer (12735535)

description: Ovary; Cancer; University of Pennsylvania; 10/24/2003


title: Ovary, Cancer (12735683)


title: Ovary, Adenocarcinoma, NOS (12765825)


title: Ovary, Cancer (12735649)


title: Ovary, Carcinoma, NOS (12765881)


title: Ovary, Cancer (12735655)


title: Ovary, Cancer (12735483)


title: Ovary, Cancer (12735455)

description: Ovary; Cancer; University of Pennsylvania; 10/16/2003


title: Ovary, Cancer (12735295)


title: Ovary, Cancer (12735407)


title: Ovary, Cancer (12734798)


title: Omentum, Cancer (12734713)

description: Omentum; Cancer; University of Pennsylvania; 10/16/2003

growth_protocol: Omentum; Cancer


title: Ovary, Cancer (12734896)

description: Ovary; Cancer; University of Pennsylvania; 10/27/2003


title: Ovary, Cancer (12734699)


title: Ovary, Cancer (12734697)


title: Omentum, Cancer (12734714)


title: Ovary, Cancer (12734752)


title: Ovary, Cancer (12709653)


title: Ovary, Cancer (12734698)


title: Ovary, UNKNOWN TISSUE (12734693)


title: Ovary, Cancer (12734701)


title: Ovary, Cancer (12709255)


title: Ovary, UNKNOWN TISSUE (12709606)


title: Ovary, Cancer (12735409)


title: Ovary, Cancer (12709042)


title: Ovary, Cancer (12709009)


title: Ovary, Cancer (12647451)

description: Ovary; Cancer; University of Pennsylvania; 10/3/2003


title: Ovary, Cancer (12709007)


title: Ovary, Cancer (12644331)


title: Ovary, Cancer (12643942)


title: Ovary, Cancer (12643941)


title: Ovary, Cancer (12643940)


title: Ovary, Cancer (12647221)


title: Ovary, Cancer (12644133)


title: Ovary, Cancer (12647175)


title: Finger, NOS, Chondrosarcoma, NOS (C40._, C41._) (13078252)

description: "Finger, NOS"; Chondrosarcoma, NOS (C40._, C41._); University of Pennsylvania; 11/12/2004


title: Ovary, Cancer (12643939)


title: Ovary, Cancer (12647450)


title: Sacrum, Chondrosarcoma, NOS (C40._, C41._) (13078251)

description: Sacrum; Chondrosarcoma, NOS (C40._, C41._); University of Pennsylvania; 11/12/2004


title: Finger, NOS, Chondrosarcoma, NOS (C40._, C41._) (13078250)

growth_protocol: "Finger, NOS"; Chondrosarcoma, NOS (C40._, C41._)


title: Femur, Osteosarcoma, NOS (C40._, C41._) (13078225)

description: Femur; Osteosarcoma, NOS (C40._, C41._); University of Pennsylvania; 11/19/2004

growth_protocol: Femur; Osteosarcoma, NOS (C40._, C41._)


title: Sacrum, Chondrosarcoma, NOS (C40._, C41._) (13078244)

growth_protocol: Sacrum; Chondrosarcoma, NOS (C40._, C41._)


title: Femur, Osteosarcoma, NOS (C40._, C41._) (13078226)


title: Humerus, Leiomyosarcoma, NOS (13078222)

description: Humerus; Leiomyosarcoma, NOS; University of Pennsylvania; 11/19/2004

growth_protocol: Humerus; Leiomyosarcoma, NOS


title: Thigh, NOS, Chondroblastic osteosarcoma (C40._, C41._) (13078242)

description: "Thigh, NOS"; Chondroblastic osteosarcoma (C40._, C41._); University of Pennsylvania; 11/12/2004


title: Thigh, NOS, Chondroblastic osteosarcoma (C40._, C41._) (13078243)

growth_protocol: "Thigh, NOS"; Chondroblastic osteosarcoma (C40._, C41._)


title: Humerus, Leiomyosarcoma, NOS (12993619)

description: Humerus; Leiomyosarcoma, NOS; University of Pennsylvania; 10/12/2004


title: Humerus, Leiomyosarcoma, NOS (12993622)


title: Humerus, Leiomyosarcoma, NOS (13074677)


title: Thigh, NOS, Leiomyosarcoma, NOS (12993285)

description: "Thigh, NOS"; Leiomyosarcoma, NOS; University of Pennsylvania; 10/12/2004

growth_protocol: "Thigh, NOS"; Leiomyosarcoma, NOS


title: Ovary, Cancer (12734897)


title: Pelvis, NOS, Leiomyosarcoma, NOS (12993413)

description: "Pelvis, NOS"; Leiomyosarcoma, NOS; University of Pennsylvania; 10/29/2004

growth_protocol: "Pelvis, NOS"; Leiomyosarcoma, NOS


title: Uterus, NOS, Leiomyosarcoma, NOS (12934604)

description: "Uterus, NOS"; Leiomyosarcoma, NOS; University of Pennsylvania; 9/7/2004

growth_protocol: "Uterus, NOS"; Leiomyosarcoma, NOS


title: Thigh, NOS, Leiomyosarcoma, NOS (12993284)


title: Pelvis, NOS, Leiomyosarcoma, NOS (12993414)


title: Thigh, NOS, Leiomyosarcoma, NOS (12934194)

description: "Thigh, NOS"; Leiomyosarcoma, NOS; University of Pennsylvania; 8/24/2004


title: Thigh, NOS, Leiomyosarcoma, NOS (12933739)

description: "Thigh, NOS"; Leiomyosarcoma, NOS; University of Pennsylvania; 9/7/2004


title: Uterus, NOS, Leiomyosarcoma, NOS (12934603)


title: Tibia, Osteosarcoma, NOS (C40._, C41._) (12886617)

description: Tibia; Osteosarcoma, NOS (C40._, C41._); University of Pennsylvania; 4/2/2004

growth_protocol: Tibia; Osteosarcoma, NOS (C40._, C41._)


title: Liver, Leiomyosarcoma, NOS (12933737)

description: Liver; Leiomyosarcoma, NOS; University of Pennsylvania; 9/7/2004

growth_protocol: Liver; Leiomyosarcoma, NOS


title: Sacrococcygeal region, NOS, Chordoma (12773580)

description: "Sacrococcygeal region, NOS"; Chordoma; University of Pennsylvania; 12/23/2004

growth_protocol: "Sacrococcygeal region, NOS"; Chordoma


title: Liver, Leiomyosarcoma, NOS (12933738)


title: Thigh, NOS, Leiomyosarcoma, NOS (12933740)


title: Thigh, NOS, Leiomyosarcoma, NOS (12773324)

description: "Thigh, NOS"; Leiomyosarcoma, NOS; University of Pennsylvania; 1/12/2004


title: Femur, Chondroblastic osteosarcoma (C40._, C41._) (12773218)

description: Femur; Chondroblastic osteosarcoma (C40._, C41._); University of Pennsylvania; 12/23/2004


title: Bone of leg, Osteosarcoma, NOS (C40._, C41._) (12844021)

description: Bone of leg; Osteosarcoma, NOS (C40._, C41._); University of Pennsylvania; 3/18/2004


title: Thigh, NOS, Leiomyosarcoma, NOS (12934195)


title: Sacrococcygeal region, NOS, Chordoma (12773581)


title: Tibia, Osteosarcoma, NOS (C40._, C41._) (12886616)


title: Sacrum, Chordoma (12773516)

description: Sacrum; Chordoma; University of Pennsylvania; 2/20/2004

growth_protocol: Sacrum; Chordoma


title: Humerus, Osteosarcoma, NOS (C40._, C41._) (12765860)

description: Humerus; Osteosarcoma, NOS (C40._, C41._); University of Pennsylvania; 12/23/2004


title: Sacrum, Chordoma (12765840)


title: Thigh, NOS, Leiomyosarcoma, NOS (12773322)


title: Sacrococcygeal region, NOS, Teratoma, malignant, NOS (13111313)

description: "Sacrococcygeal region, NOS"; Teratoma, malignant, NOS; University of Pennsylvania; 1/21/2005


title: Femur, Chondroblastic osteosarcoma (C40._, C41._) (12773579)

growth_protocol: Femur; Chondroblastic osteosarcoma (C40._, C41._)


title: Humerus, Osteosarcoma, NOS (C40._, C41._) (12765856)

growth_protocol: Humerus; Osteosarcoma, NOS (C40._, C41._)


title: Ovary, Teratoma, malignant, NOS (13111012)

description: Ovary; Teratoma, malignant, NOS; University of Pennsylvania; 1/21/2005

growth_protocol: Ovary; Teratoma, malignant, NOS


title: Unknown primary site, Teratoma, malignant, NOS (13078131)

description: Unknown primary site; Teratoma, malignant, NOS; University of Pennsylvania; 1/4/2005


title: Ovary, Teratoma, malignant, NOS (13111010)


title: Unknown primary site, Teratoma, malignant, NOS (13078132)

growth_protocol: Unknown primary site; Teratoma, malignant, NOS


title: Ovary, Teratoma, malignant, NOS (13111008)


title: Ovary, Teratoma, malignant, NOS (13077959)

description: Ovary; Teratoma, malignant, NOS; University of Pennsylvania; 12/17/2004


title: Ovary, Teratoma, malignant, NOS (13077958)


title: Unknown primary site, Teratoma, malignant, NOS (13078489)

description: Unknown primary site; Teratoma, malignant, NOS; University of Pennsylvania; 12/3/2004


title: Ovary, Teratoma, malignant, NOS (13078130)


title: Ovary, Teratoma, malignant, NOS (12993444)

description: Ovary; Teratoma, malignant, NOS; University of Pennsylvania; 11/5/2004


title: Unknown primary site, Teratoma, malignant, NOS (13078490)


title: Ovary, Teratoma, malignant, NOS (12993446)


title: Sacrococcygeal region, NOS, Teratoma, malignant, NOS (12993445)

description: "Sacrococcygeal region, NOS"; Teratoma, malignant, NOS; University of Pennsylvania; 11/5/2004


title: Ovary, Teratoma, malignant, NOS (12993447)


title: Sacrococcygeal region, NOS, Teratoma, malignant, NOS (12934468)

description: "Sacrococcygeal region, NOS"; Teratoma, malignant, NOS; University of Pennsylvania; 10/8/2004


title: Ovary, Teratoma, malignant, NOS (13077957)


title: Sacrococcygeal region, NOS, Teratoma, malignant, NOS (12993448)

growth_protocol: "Sacrococcygeal region, NOS"; Teratoma, malignant, NOS


title: Ovary, Teratoma, malignant, NOS (13077956)


title: Ovary, Teratoma, malignant, NOS (12992885)


title: Ovary, Carcinoma, NOS (13111097)

description: Ovary; Carcinoma, NOS; University of Pennsylvania; 1/18/2005

growth_protocol: Ovary; Carcinoma, NOS


title: Ovary, Carcinoma, NOS (13111096)


title: Sacrococcygeal region, NOS, Teratoma, malignant, NOS (12934467)


title: Ovary, Carcinoma, NOS (13111092)


title: Ovary, Carcinoma, NOS (13111095)


title: Ovary, Carcinoma, NOS (13111024)


title: Ovary, Carcinoma, NOS (13111028)


title: Ovary, Carcinoma, NOS (13111094)


title: Ovary, Cancer (12462533)

description: Ovary; Cancer; University of Pennsylvania; 12/13/2002

growth_protocol: Ovary; Cancer


title: Ovary, Cancer (12462527)


title: Ovary, Cancer (12462315)


title: Femur, Osteosarcoma, NOS (C40._, C41._) (12462412)

description: Femur; Osteosarcoma, NOS (C40._, C41._); University of Pennsylvania; 12/6/2002

growth_protocol: Femur; Osteosarcoma, NOS (C40._, C41._)


title: Knee, NOS, Hemangiosarcoma (12457856)

description: "Knee, NOS"; Hemangiosarcoma; University of Pennsylvania; 11/29/2002

growth_protocol: "Knee, NOS"; Hemangiosarcoma


title: Ovary, Cancer (12462289)


title: Tibia, Chondroblastic osteosarcoma (C40._, C41._) (12432597)

description: Tibia; Chondroblastic osteosarcoma (C40._, C41._); University of Pennsylvania; 11/19/2002


title: Thigh, NOS, Chondroblastic osteosarcoma (C40._, C41._) (12447230)

description: "Thigh, NOS"; Chondroblastic osteosarcoma (C40._, C41._); University of Pennsylvania; 11/29/2002


title: Femur, Osteosarcoma, NOS (C40._, C41._) (12447136)

description: Femur; Osteosarcoma, NOS (C40._, C41._); University of Pennsylvania; 11/29/2002


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12553666)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma; University of Pennsylvania; 4/4/2003

source_name: pooled male v1

tag: pooled male v1


title: Breast, NOS (excludes Skin of breast C44.5), Infiltrating duct and lobular carcinoma (C50._) (12557682)

description: "Breast, NOS (excludes Skin of breast C44.5)"; Infiltrating duct and lobular carcinoma (C50._); University of Pennsylvania; 4/4/2003


title: Thigh, NOS, Chondroblastic osteosarcoma (C40._, C41._) (12462452)

growth_protocol: "Thigh, NOS"; Chondroblastic osteosarcoma (C40._, C41._)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12553590)

growth_protocol: "Breast, NOS (excludes Skin of breast C44.5)"; Ductal carcinoma


title: Sacrococcygeal region, NOS, Teratoma, malignant, NOS (13111317)

description: "Sacrococcygeal region, NOS"; Teratoma, malignant, NOS; University of Pennsylvania; 1/21/2005


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12557683)


title: Knee, NOS, Hemangiosarcoma (12462457)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12553357)


title: Tibia, Osteosarcoma, NOS (C40._, C41._) (12444970)

description: Tibia; Osteosarcoma, NOS (C40._, C41._); University of Pennsylvania; 11/8/2002


title: Tibia, Osteosarcoma, NOS (C40._, C41._) (12462095)


title: Abdomen, NOS, Melanoma, NOS (13168588)

description: "Abdomen, NOS"; Melanoma, NOS; University of Pennsylvania; 4/8/2005

growth_protocol: "Abdomen, NOS"; Melanoma, NOS

tag: Cell Line WM 983A


title: Abdomen, NOS, Melanoma, NOS (13168587)


title: Breast, NOS (excludes Skin of breast C44.5), Ductal carcinoma (12553667)


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12647203)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS; University of Pennsylvania; 9/19/2003

tag: Cell Line WM 8


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12647202)

growth_protocol: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Superficial spreading melanoma (C44._) (13074890)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Superficial spreading melanoma (C44._); University of Pennsylvania; 12/3/2004

tag: Cell Line WM 793 B


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Superficial spreading melanoma (C44._) (13168447)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Superficial spreading melanoma (C44._); University of Pennsylvania; 3/25/2005


title: Skin of back, Superficial spreading melanoma (C44._) (13074889)

description: Skin of back; Superficial spreading melanoma (C44._); University of Pennsylvania; 12/3/2004

tag: Cell Line WM 75


title: Skin of back, Superficial spreading melanoma (C44._) (13074888)

growth_protocol: Skin of back; Superficial spreading melanoma (C44._)


title: Skin of leg, Melanoma, NOS (12430011)

description: Skin of leg; Melanoma, NOS; University of Pennsylvania; 11/29/2002

growth_protocol: Skin of leg; Melanoma, NOS

tag: Cell Line WM 3268V

source_name: male

tag: male


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Superficial spreading melanoma (C44._) (13168440)

growth_protocol: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Superficial spreading melanoma (C44._)

tag: pooled reference


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Superficial spreading melanoma (C44._) (13074891)


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12647953)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS; University of Pennsylvania; 9/22/2003

tag: Cell Line WM 3248


title: Ankle, NOS, Melanoma, NOS (12735484)

description: "Ankle, NOS"; Melanoma, NOS; University of Pennsylvania; 10/24/2003

growth_protocol: "Ankle, NOS"; Melanoma, NOS

tag: Cell Line WM 3211


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12647214)

tag: Cell Line WM 3000

tag: pooled female


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12933403)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS; University of Pennsylvania; 9/7/2004

tag: Cell Line WM 1985


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12647954)


title: Buttock, NOS, Melanoma, NOS (13173750)

description: "Buttock, NOS"; Melanoma, NOS; University of Pennsylvania; 4/8/2005

growth_protocol: "Buttock, NOS"; Melanoma, NOS

tag: Cell Line WM 3208


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12773265)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS; University of Pennsylvania; 1/20/2004

tag: Cell Line WM 3077


title: Buttock, NOS, Melanoma, NOS (13173749)


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12773263)

tag: Cell Line WM 3066


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12776217)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS; University of Pennsylvania; 1/13/2004

tag: Cell Line WM 3004


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (13074916)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS; University of Pennsylvania; 12/3/2004

tag: Cell Line WM 1366


title: Ankle, NOS, Melanoma, NOS (12735656)


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12933422)


title: Buttock, NOS, Melanoma, NOS (12734922)

description: "Buttock, NOS"; Melanoma, NOS; University of Pennsylvania; 10/24/2003


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12647171)


title: Buttock, NOS, Melanoma, NOS (12734742)


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12773262)


title: Skin of leg, Melanoma, NOS (12432600)


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (13074917)


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12647172)


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12776216)


title: Skin of forearm, Superficial spreading melanoma (C44._) (13168449)

description: Skin of forearm; Superficial spreading melanoma (C44._); University of Pennsylvania; 3/25/2005

tag: Cell Line WM 1361A


title: Skin of forearm, Superficial spreading melanoma (C44._) (12432598)

description: Skin of forearm; Superficial spreading melanoma (C44._); University of Pennsylvania; 11/29/2002

tag: female


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (13074892)

tag: Cell Line WM 1346


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (13074915)


title: Skin of forearm, Superficial spreading melanoma (C44._) (12430304)

growth_protocol: Skin of forearm; Superficial spreading melanoma (C44._)


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12933400)

tag: Cell Line WM 1232


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12647173)

description: "Skin, NOS (excludes Skin of labia majora C51.0, Sk"; Melanoma, NOS; University of Pennsylvania; 10/3/2003


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12933399)


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12647212)


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12644073)

tag: Cell Line WM 1193C


title: Skin, NOS (excludes Skin of labia majora C51.0, Sk, Melanoma, NOS (12644074)


title: Lymph node, NOS, Superficial spreading melanoma (C44._) (12644071)

description: "Lymph node, NOS"; Superficial spreading melanoma (C44._); University of Pennsylvania; 9/22/2003

tag: Cell Line WM 1158


title: Ovary, Carcinoma, NOS (12988061)

description: Ovary; Carcinoma, NOS; University of Pennsylvania; 10/1/2004

tag: Cell Line UPN251

tag: pooled reference


title: Lymph node, NOS, Superficial spreading melanoma (C44._) (12644072)

growth_protocol: "Lymph node, NOS"; Superficial spreading melanoma (C44._)


title: Ovary, Carcinoma, NOS (12988060)


title: Bone, NOS, Osteosarcoma, NOS (C40._, C41._) (12457588)

description: "Bone, NOS"; Osteosarcoma, NOS (C40._, C41._); University of Pennsylvania; 12/6/2002

tag: Cell Line TI-73

tag: pooled male


title: Bone, NOS, Osteosarcoma, NOS (C40._, C41._) (12457772)

description: "Bone, NOS"; Osteosarcoma, NOS (C40._, C41._); University of Pennsylvania; 10/8/2002


title: Unknown primary site, Sarcoma, NOS (12429851)

description: Unknown primary site; Sarcoma, NOS; University of Pennsylvania; 11/19/2002

growth_protocol: Unknown primary site; Sarcoma, NOS

tag: Cell Line SW872


title: Bone, NOS, Osteosarcoma, NOS (C40._, C41._) (12735807)

description: "Bone, NOS"; Osteosarcoma, NOS (C40._, C41._); University of Pennsylvania; 10/13/2003

tag: Cell Line U-2-OS


title: Bone, NOS, Osteosarcoma, NOS (C40._, C41._) (12734872)

growth_protocol: "Bone, NOS"; Osteosarcoma, NOS (C40._, C41._)


title: Unknown primary site, Fibrosarcoma, NOS (12447135)

description: Unknown primary site; Fibrosarcoma, NOS; University of Pennsylvania; 11/19/2002

growth_protocol: Unknown primary site; Fibrosarcoma, NOS

tag: Cell Line SW684


title: Unknown primary site, Sarcoma, NOS (12430302)


title: Unknown primary site, Fibrosarcoma, NOS (12446951)


title: Skin of forearm, Superficial spreading melanoma (C44._) (13168448)


title: Uterus, NOS, Leiomyosarcoma, NOS (12844031)

description: "Uterus, NOS"; Leiomyosarcoma, NOS; University of Pennsylvania; 3/18/2004

growth_protocol: "Uterus, NOS"; Leiomyosarcoma, NOS

tag: Cell Line SK-UT-1B


title: Kidney, NOS, Liposarcoma, NOS (12844035)

description: "Kidney, NOS"; Liposarcoma, NOS; University of Pennsylvania; 3/18/2004

growth_protocol: "Kidney, NOS"; Liposarcoma, NOS

tag: Cell Line RD


title: Uterus, NOS, Leiomyosarcoma, NOS (12844046)