title: Expt165 Sa5 - 95A amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/62047.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 800, 28030; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.39; Parameter Scan Time = 09:46:19; Parameter PMT Volts = 500; Parameter Scan Date = 2005-06-21; Parameter Pixel Size = 10; Parameter Laser on time = 199876; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.26; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.39; Parameter Scan Time = 09:46:19; Parameter PMT Volts = 690; Parameter Scan Date = 2005-06-21; Parameter Pixel Size = 10; Parameter Laser on time = 199437; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.19; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt168 W5 - 91B amp

status: Public on Jul 17 2007

type: genomic

city: Stanford

last: Stanford Microarray Database

state: CA

address: 300 Pasteur Drive

department: Stanford University, School of Medicine

country: USA

institute: Stanford Microarray Database (SMD)

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62404.gif

hyb_protocol: not provided

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 850, 27320; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.69; Parameter Scan Time = 14:14:26; Parameter PMT Volts = 540; Parameter Scan Date = 2005-07-08; Parameter Pixel Size = 10; Parameter Laser on time = 225951; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.44; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.69; Parameter Scan Time = 14:14:26; Parameter PMT Volts = 610; Parameter Scan Date = 2005-07-08; Parameter Pixel Size = 10; Parameter Laser on time = 590755; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.94; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller

data_processing: VALUE is Log (base 2) of the ratio of the median of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

molecule: genomic DNA

organism: Vibrio cholerae

label_protocol: not provided

extract_protocol: not provided


title: Expt168 W5 - 61B amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62403.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 790, 27380; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.51; Parameter Scan Time = 13:44:56; Parameter PMT Volts = 530; Parameter Scan Date = 2005-07-08; Parameter Pixel Size = 10; Parameter Laser on time = 225922; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.44; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.51; Parameter Scan Time = 13:44:56; Parameter PMT Volts = 610; Parameter Scan Date = 2005-07-08; Parameter Pixel Size = 10; Parameter Laser on time = 590726; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.93; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt165 W5 - 21A amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/62049.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1390, 27980; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.55; Parameter Scan Time = 10:00:38; Parameter PMT Volts = 500; Parameter Scan Date = 2005-06-21; Parameter Pixel Size = 10; Parameter Laser on time = 199891; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.29; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.55; Parameter Scan Time = 10:00:38; Parameter PMT Volts = 700; Parameter Scan Date = 2005-06-21; Parameter Pixel Size = 10; Parameter Laser on time = 199452; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.20; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt165 SL5 - 101A amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/62048.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1390, 27980; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.51; Parameter Scan Time = 09:54:24; Parameter PMT Volts = 500; Parameter Scan Date = 2005-06-21; Parameter Pixel Size = 10; Parameter Laser on time = 199884; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.29; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.51; Parameter Scan Time = 09:54:24; Parameter PMT Volts = 690; Parameter Scan Date = 2005-06-21; Parameter Pixel Size = 10; Parameter Laser on time = 199445; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.19; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt168 W5 - 22B amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62402.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 480, 27240; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.46; Parameter Scan Time = 13:40:17; Parameter PMT Volts = 530; Parameter Scan Date = 2005-07-08; Parameter Pixel Size = 10; Parameter Laser on time = 225918; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.43; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.46; Parameter Scan Time = 13:40:17; Parameter PMT Volts = 610; Parameter Scan Date = 2005-07-08; Parameter Pixel Size = 10; Parameter Laser on time = 590722; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.93; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt165 SL4 - 41A amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/62051.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1300, 27250; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.76; Parameter Scan Time = 10:17:03; Parameter PMT Volts = 500; Parameter Scan Date = 2005-06-21; Parameter Pixel Size = 10; Parameter Laser on time = 199907; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.32; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.76; Parameter Scan Time = 10:17:03; Parameter PMT Volts = 710; Parameter Scan Date = 2005-06-21; Parameter Pixel Size = 10; Parameter Laser on time = 199469; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.20; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt157 W6G 1 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-04/60655.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1040, 27160; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.61; Parameter Scan Time = 11:47:14; Parameter PMT Volts = 510; Parameter Scan Date = 2005-03-29; Parameter Pixel Size = 10; Parameter Laser on time = 196820; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.14; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.61; Parameter Scan Time = 11:47:14; Parameter PMT Volts = 630; Parameter Scan Date = 2005-03-29; Parameter Pixel Size = 10; Parameter Laser on time = 196536; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.19; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller

source_name: W6G 1

tag: W6G 1


title: Expt165 E5 - 64A amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/62045.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1360, 27320; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.24; Parameter Scan Time = 09:34:33; Parameter PMT Volts = 510; Parameter Scan Date = 2005-06-21; Parameter Pixel Size = 10; Parameter Laser on time = 199865; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.13; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.24; Parameter Scan Time = 09:34:33; Parameter PMT Volts = 680; Parameter Scan Date = 2005-06-21; Parameter Pixel Size = 10; Parameter Laser on time = 199426; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.19; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt165 Sa5 - 33A amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/62046.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1330, 28030; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.35; Parameter Scan Time = 09:40:52; Parameter PMT Volts = 510; Parameter Scan Date = 2005-06-21; Parameter Pixel Size = 10; Parameter Laser on time = 199871; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.17; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.35; Parameter Scan Time = 09:40:52; Parameter PMT Volts = 690; Parameter Scan Date = 2005-06-21; Parameter Pixel Size = 10; Parameter Laser on time = 199432; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.19; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt192 SA5Y rr

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66541.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1020, 27520; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.02; Parameter Scan Time = 15:23:15; Parameter PMT Volts = 600; Parameter Scan Date = 2006-01-13; Parameter Pixel Size = 10; Parameter Laser on time = 260939; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.38; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.02; Parameter Scan Time = 15:23:15; Parameter PMT Volts = 620; Parameter Scan Date = 2006-01-13; Parameter Pixel Size = 10; Parameter Laser on time = 625849; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.20; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt157 SA10G A2 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-04/60654.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1070, 27280; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.26; Parameter Scan Time = 12:42:08; Parameter PMT Volts = 520; Parameter Scan Date = 2005-03-29; Parameter Pixel Size = 10; Parameter Laser on time = 196876; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.36; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.26; Parameter Scan Time = 12:42:08; Parameter PMT Volts = 630; Parameter Scan Date = 2005-03-29; Parameter Pixel Size = 10; Parameter Laser on time = 196592; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.22; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller

source_name: SA10G A2

tag: SA10G A2


title: Expt168 PS5 - 34B amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62401.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 480, 27240; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.40; Parameter Scan Time = 13:35:07; Parameter PMT Volts = 530; Parameter Scan Date = 2005-07-08; Parameter Pixel Size = 10; Parameter Laser on time = 225912; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.43; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.40; Parameter Scan Time = 13:35:07; Parameter PMT Volts = 600; Parameter Scan Date = 2005-07-08; Parameter Pixel Size = 10; Parameter Laser on time = 590716; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.93; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt152 W9G  2 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-03/59608.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1080, 28160; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.94; Parameter Scan Time = 09:55:44; Parameter PMT Volts = 470; Parameter Scan Date = 2005-03-02; Parameter Pixel Size = 10; Parameter Laser on time = 195268; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.22; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.94; Parameter Scan Time = 09:55:44; Parameter PMT Volts = 690; Parameter Scan Date = 2005-03-02; Parameter Pixel Size = 10; Parameter Laser on time = 194990; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.20; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt192 SL4G rpt3

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66544.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1020, 27520; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.10; Parameter Scan Time = 15:33:01; Parameter PMT Volts = 600; Parameter Scan Date = 2006-01-13; Parameter Pixel Size = 10; Parameter Laser on time = 260949; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.38; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.10; Parameter Scan Time = 15:33:01; Parameter PMT Volts = 620; Parameter Scan Date = 2006-01-13; Parameter Pixel Size = 10; Parameter Laser on time = 625859; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.24; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt192 SA3G rpt3

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66545.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1020, 27520; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.09; Parameter Scan Time = 15:37:44; Parameter PMT Volts = 600; Parameter Scan Date = 2006-01-13; Parameter Pixel Size = 10; Parameter Laser on time = 260953; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.38; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.09; Parameter Scan Time = 15:37:44; Parameter PMT Volts = 620; Parameter Scan Date = 2006-01-13; Parameter Pixel Size = 10; Parameter Laser on time = 625863; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.25; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt152 SL9Y 2 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-03/59607.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1080, 27930; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.04; Parameter Scan Time = 10:09:46; Parameter PMT Volts = 470; Parameter Scan Date = 2005-03-02; Parameter Pixel Size = 10; Parameter Laser on time = 195282; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.23; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.04; Parameter Scan Time = 10:09:46; Parameter PMT Volts = 690; Parameter Scan Date = 2005-03-02; Parameter Pixel Size = 10; Parameter Laser on time = 195004; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.22; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt157 SA10G A1 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-04/60653.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1070, 27740; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.20; Parameter Scan Time = 12:37:06; Parameter PMT Volts = 520; Parameter Scan Date = 2005-03-29; Parameter Pixel Size = 10; Parameter Laser on time = 196870; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.35; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.20; Parameter Scan Time = 12:37:06; Parameter PMT Volts = 630; Parameter Scan Date = 2005-03-29; Parameter Pixel Size = 10; Parameter Laser on time = 196586; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.21; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller

source_name: SA10G A1

tag: SA10G A1


title: Expt152 W10G 2 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-03/59610.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1080, 27930; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.08; Parameter Scan Time = 10:15:18; Parameter PMT Volts = 490; Parameter Scan Date = 2005-03-02; Parameter Pixel Size = 10; Parameter Laser on time = 195288; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.24; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.08; Parameter Scan Time = 10:15:18; Parameter PMT Volts = 690; Parameter Scan Date = 2005-03-02; Parameter Pixel Size = 10; Parameter Laser on time = 195010; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.22; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt192 SL5Y rpt3

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66542.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1020, 27520; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.07; Parameter Scan Time = 15:28:20; Parameter PMT Volts = 600; Parameter Scan Date = 2006-01-13; Parameter Pixel Size = 10; Parameter Laser on time = 260944; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.38; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.07; Parameter Scan Time = 15:28:20; Parameter PMT Volts = 620; Parameter Scan Date = 2006-01-13; Parameter Pixel Size = 10; Parameter Laser on time = 625854; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.23; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt157 SA8G A2 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-04/60650.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1040, 27160; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.16; Parameter Scan Time = 12:28:29; Parameter PMT Volts = 520; Parameter Scan Date = 2005-03-29; Parameter Pixel Size = 10; Parameter Laser on time = 196861; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.31; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.16; Parameter Scan Time = 12:28:29; Parameter PMT Volts = 630; Parameter Scan Date = 2005-03-29; Parameter Pixel Size = 10; Parameter Laser on time = 196578; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.20; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller

source_name: SA8G A2

tag: SA8G A2


title: Expt192 SO5 rpt3

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66539.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1020, 27520; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.98; Parameter Scan Time = 15:11:11; Parameter PMT Volts = 580; Parameter Scan Date = 2006-01-13; Parameter Pixel Size = 10; Parameter Laser on time = 260927; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.37; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.98; Parameter Scan Time = 15:11:11; Parameter PMT Volts = 610; Parameter Scan Date = 2006-01-13; Parameter Pixel Size = 10; Parameter Laser on time = 625836; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.17; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt152 SL9G 2 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-03/59605.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1930, 26710; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.11; Parameter Scan Time = 10:23:03; Parameter PMT Volts = 440; Parameter Scan Date = 2005-03-02; Parameter Pixel Size = 10; Parameter Laser on time = 195296; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.25; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.11; Parameter Scan Time = 10:23:03; Parameter PMT Volts = 690; Parameter Scan Date = 2005-03-02; Parameter Pixel Size = 10; Parameter Laser on time = 195018; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.22; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt157 E7G 2 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-04/60656.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1000, 27580; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.65; Parameter Scan Time = 14:50:26; Parameter PMT Volts = 520; Parameter Scan Date = 2005-03-29; Parameter Pixel Size = 10; Parameter Laser on time = 197003; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.51; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.65; Parameter Scan Time = 14:50:26; Parameter PMT Volts = 650; Parameter Scan Date = 2005-03-29; Parameter Pixel Size = 10; Parameter Laser on time = 196719; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.24; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller

source_name: E7G 2

tag: E7G 2


title: Expt157 SA8M A2 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-04/60652.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1040, 27160; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.71; Parameter Scan Time = 11:52:03; Parameter PMT Volts = 510; Parameter Scan Date = 2005-03-29; Parameter Pixel Size = 10; Parameter Laser on time = 196825; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.20; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.71; Parameter Scan Time = 11:52:03; Parameter PMT Volts = 630; Parameter Scan Date = 2005-03-29; Parameter Pixel Size = 10; Parameter Laser on time = 196542; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.20; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller

source_name: SA8M A2

tag: SA8M A2


title: Expt157 SA8M A1 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-04/60651.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1040, 27160; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.86; Parameter Scan Time = 12:02:45; Parameter PMT Volts = 510; Parameter Scan Date = 2005-03-29; Parameter Pixel Size = 10; Parameter Laser on time = 196835; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.26; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.86; Parameter Scan Time = 12:02:45; Parameter PMT Volts = 630; Parameter Scan Date = 2005-03-29; Parameter Pixel Size = 10; Parameter Laser on time = 196552; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.20; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller

source_name: SA8M A1

tag: SA8M A1


title: KLF13 WT/KO thymocytes(602/603)

type: RNA

description:
Simple annotation: Transcription, Knock-out
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63617.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 720, 4600; Parameter Datafile type = GenePix Results 2; Software: type: feature extraction; Performer: Meixia,,Zhou Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 28.92; Parameter Scan Time = 14:41:45; Parameter PMT Volts = 600; Parameter Scan Date = 2005-08-23; Parameter Pixel Size = 10; Parameter Laser on time = 53525; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.54; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.6; Parameter Scanning software = AxImageIO; Performer: Meixia,,Zhou Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 28.92; Parameter Scan Time = 14:41:45; Parameter PMT Volts = 600; Parameter Scan Date = 2005-08-23; Parameter Pixel Size = 10; Parameter Laser on time = 224840; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.36; Parameter Scanning software version = 2.0.2.6; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Meixia,,Zhou

molecule: total RNA

organism: Mus musculus

source_name: WT labelled with Cy-3

tag: WT labelled with Cy-3

source_name: KO labelled with Cy-5

tag: KO labelled with Cy-5


title: KLF13WT/KO thymocytes(598/601))

description:
Simple annotation: Transgenic, Knock-out
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63616.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 720, 4600; Parameter Datafile type = GenePix Results 2; Software: type: feature extraction; Performer: Meixia,,Zhou Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 29.04; Parameter Scan Time = 14:48:37; Parameter PMT Volts = 600; Parameter Scan Date = 2005-08-23; Parameter Pixel Size = 10; Parameter Laser on time = 53533; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.54; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.6; Parameter Scanning software = AxImageIO; Performer: Meixia,,Zhou Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 29.04; Parameter Scan Time = 14:48:37; Parameter PMT Volts = 600; Parameter Scan Date = 2005-08-23; Parameter Pixel Size = 10; Parameter Laser on time = 224848; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.36; Parameter Scanning software version = 2.0.2.6; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Meixia,,Zhou

source_name: WT labelled with cy-3

tag: WT labelled with cy-3


title: Expt192 MO3 rpt3

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66537.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1440, 27820; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.84; Parameter Scan Time = 14:57:05; Parameter PMT Volts = 610; Parameter Scan Date = 2006-01-13; Parameter Pixel Size = 10; Parameter Laser on time = 260913; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.38; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.84; Parameter Scan Time = 14:57:05; Parameter PMT Volts = 610; Parameter Scan Date = 2006-01-13; Parameter Pixel Size = 10; Parameter Laser on time = 625823; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.17; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt168 PS5 - 32B amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62400.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 480, 27240; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.14; Parameter Scan Time = 13:22:51; Parameter PMT Volts = 520; Parameter Scan Date = 2005-07-08; Parameter Pixel Size = 10; Parameter Laser on time = 225900; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.42; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.14; Parameter Scan Time = 13:22:51; Parameter PMT Volts = 610; Parameter Scan Date = 2005-07-08; Parameter Pixel Size = 10; Parameter Laser on time = 590704; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.95; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Fetal calf 260 days, ST_0424, rep3

city: Saint-Genès-Champanelle

first: Isabelle

last: CASSAR-MALEK

address: Theix

department: Centre de Clermont-Fd/Theix

country: France

institute: INRA

description: Semitendinosus (ST) muscle from a charolais fetal calf at 260 days of gestation (male).

data_processing: After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

organism: Bos taurus

source_name: Fetal calf 260 days, ST_0424

tag: Charolais, Fetal calf 260 days p.c., Double-Muscled

source_name: Pool of 21 samples  (ST muscle )

tag: Pool of 16 samples of 24 months charolais heifers and of 5 samples of charolais fetal calf aged 260 days (ST muscle )


title: Expt192 O395 rpt3

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66538.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1020, 27520; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.97; Parameter Scan Time = 15:04:51; Parameter PMT Volts = 600; Parameter Scan Date = 2006-01-13; Parameter Pixel Size = 10; Parameter Laser on time = 260921; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.38; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.97; Parameter Scan Time = 15:04:51; Parameter PMT Volts = 580; Parameter Scan Date = 2006-01-13; Parameter Pixel Size = 10; Parameter Laser on time = 625831; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.18; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Fetal calf 260 days, ST_0424, rep4


title: Expt168 W5 - 83B amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62399.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 670, 27230; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.65; Parameter Scan Time = 14:09:46; Parameter PMT Volts = 530; Parameter Scan Date = 2005-07-08; Parameter Pixel Size = 10; Parameter Laser on time = 225947; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.44; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.65; Parameter Scan Time = 14:09:46; Parameter PMT Volts = 610; Parameter Scan Date = 2005-07-08; Parameter Pixel Size = 10; Parameter Laser on time = 590751; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.94; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt168 W5 - 81B amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62397.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 700, 27140; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.57; Parameter Scan Time = 14:00:27; Parameter PMT Volts = 540; Parameter Scan Date = 2005-07-08; Parameter Pixel Size = 10; Parameter Laser on time = 225938; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.44; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.57; Parameter Scan Time = 14:00:27; Parameter PMT Volts = 610; Parameter Scan Date = 2005-07-08; Parameter Pixel Size = 10; Parameter Laser on time = 590742; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.94; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Fetal calf 260 days, ST_0423, rep3

source_name: Fetal calf 260 days, ST_0423


title: Fetal calf 260 days, ST_0424, rep1


title: Fetal calf 260 days, ST_0423, rep4


title: Expt168 W5 - 62A amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62311.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 20, 27760; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.00; Parameter Scan Time = 11:03:43; Parameter PMT Volts = 560; Parameter Scan Date = 2005-06-30; Parameter Pixel Size = 10; Parameter Laser on time = 224294; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.48; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.00; Parameter Scan Time = 11:03:43; Parameter PMT Volts = 600; Parameter Scan Date = 2005-06-30; Parameter Pixel Size = 10; Parameter Laser on time = 589098; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.92; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Fetal calf 260 days, ST_0424, rep2


title: Fetal calf 260 days, ST_0423, rep2


title: Expt153 L6 2 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-03/60280.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 520, 28410; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.65; Parameter Scan Time = 11:42:27; Parameter PMT Volts = 510; Parameter Scan Date = 2005-03-08; Parameter Pixel Size = 10; Parameter Laser on time = 195809; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.18; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.65; Parameter Scan Time = 11:42:27; Parameter PMT Volts = 620; Parameter Scan Date = 2005-03-08; Parameter Pixel Size = 10; Parameter Laser on time = 195531; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.22; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt168 W5 - 82B amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62398.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 700, 27140; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.59; Parameter Scan Time = 14:04:58; Parameter PMT Volts = 530; Parameter Scan Date = 2005-07-08; Parameter Pixel Size = 10; Parameter Laser on time = 225942; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.44; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.59; Parameter Scan Time = 14:04:58; Parameter PMT Volts = 610; Parameter Scan Date = 2005-07-08; Parameter Pixel Size = 10; Parameter Laser on time = 590746; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.94; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Fetal calf 260 days, ST_0422, rep2

source_name: Fetal calf 260 days, ST_0422


title: Fetal calf 260 days, ST_C108, rep4

description: Semitendinosus (ST) muscle from INRA95 fetal calf at 260 days of gestation (male). The animal is a heterozygote for the myostatin Q204X mutation.

source_name: Fetal calf 260 days, ST_C108

tag: INRA95, Fetal calf 260 days p.c., Double-Muscled


title: Fetal calf 260 days, ST_0422, rep3


title: Expt153 SL9Y 1 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-03/60283.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 370, 28270; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.97; Parameter Scan Time = 12:10:11; Parameter PMT Volts = 520; Parameter Scan Date = 2005-03-08; Parameter Pixel Size = 10; Parameter Laser on time = 195837; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.18; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.97; Parameter Scan Time = 12:10:11; Parameter PMT Volts = 690; Parameter Scan Date = 2005-03-08; Parameter Pixel Size = 10; Parameter Laser on time = 195559; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.22; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt153 Sa5 2 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-03/60281.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 540, 27920; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.75; Parameter Scan Time = 11:50:22; Parameter PMT Volts = 510; Parameter Scan Date = 2005-03-08; Parameter Pixel Size = 10; Parameter Laser on time = 195817; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.16; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.75; Parameter Scan Time = 11:50:22; Parameter PMT Volts = 620; Parameter Scan Date = 2005-03-08; Parameter Pixel Size = 10; Parameter Laser on time = 195539; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.21; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt168 W5 - 62B amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62396.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 790, 27380; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.56; Parameter Scan Time = 13:55:41; Parameter PMT Volts = 530; Parameter Scan Date = 2005-07-08; Parameter Pixel Size = 10; Parameter Laser on time = 225934; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.44; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.56; Parameter Scan Time = 13:55:41; Parameter PMT Volts = 610; Parameter Scan Date = 2005-07-08; Parameter Pixel Size = 10; Parameter Laser on time = 590737; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.94; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt168 PS5 - 32A amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62310.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 40, 27880; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.76; Parameter Scan Time = 10:38:48; Parameter PMT Volts = 560; Parameter Scan Date = 2005-06-30; Parameter Pixel Size = 10; Parameter Laser on time = 224270; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.47; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.76; Parameter Scan Time = 10:38:48; Parameter PMT Volts = 600; Parameter Scan Date = 2005-06-30; Parameter Pixel Size = 10; Parameter Laser on time = 589074; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.91; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt192 SA4-82

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/66233.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 240, 27560; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.63; Parameter Scan Time = 11:47:12; Parameter PMT Volts = 500; Parameter Scan Date = 2005-11-22; Parameter Pixel Size = 10; Parameter Laser on time = 58440; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.47; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.63; Parameter Scan Time = 11:47:12; Parameter PMT Volts = 650; Parameter Scan Date = 2005-11-22; Parameter Pixel Size = 10; Parameter Laser on time = 204365; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.36; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Fetal calf 260 days, ST_0423, rep1


title: Fetal calf 260 days, ST_0422, rep4


title: Expt153 So5 2 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-03/60282.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 540, 27920; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.77; Parameter Scan Time = 11:54:59; Parameter PMT Volts = 510; Parameter Scan Date = 2005-03-08; Parameter Pixel Size = 10; Parameter Laser on time = 195823; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.16; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.77; Parameter Scan Time = 11:54:59; Parameter PMT Volts = 620; Parameter Scan Date = 2005-03-08; Parameter Pixel Size = 10; Parameter Laser on time = 195545; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.22; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Fetal calf 260 days, ST_0422, rep1


title: Expt192 W10G

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/66230.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 480, 27600; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.40; Parameter Scan Time = 12:23:55; Parameter PMT Volts = 470; Parameter Scan Date = 2005-11-16; Parameter Pixel Size = 10; Parameter Laser on time = 58044; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.46; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.40; Parameter Scan Time = 12:23:55; Parameter PMT Volts = 630; Parameter Scan Date = 2005-11-16; Parameter Pixel Size = 10; Parameter Laser on time = 203969; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.36; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt192 SL4-31

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/66231.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 480, 27970; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.52; Parameter Scan Time = 12:40:26; Parameter PMT Volts = 490; Parameter Scan Date = 2005-11-16; Parameter Pixel Size = 10; Parameter Laser on time = 58055; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.46; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.52; Parameter Scan Time = 12:40:26; Parameter PMT Volts = 630; Parameter Scan Date = 2005-11-16; Parameter Pixel Size = 10; Parameter Laser on time = 203980; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.36; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt192 SL4-41

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/66232.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 480, 27970; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.59; Parameter Scan Time = 12:50:58; Parameter PMT Volts = 490; Parameter Scan Date = 2005-11-16; Parameter Pixel Size = 10; Parameter Laser on time = 58071; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.45; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.59; Parameter Scan Time = 12:50:58; Parameter PMT Volts = 640; Parameter Scan Date = 2005-11-16; Parameter Pixel Size = 10; Parameter Laser on time = 203996; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.36; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Fetal calf 260 days, ST_C108, rep3


title: Fetal calf 260 days, ST_C108, rep1


title: Fetal calf 260 days, ST_C107, rep4

description: Semitendinosus (ST) muscle from INRA95 fetal calf at 260 days of gestation (male). The animal is a homozygote for the myostatin Q204X mutation.

source_name: Fetal calf 260 days, ST_C107


title: Fetal calf 260 days, ST_C108, rep2


title: Fetal calf 260 days, ST_C107, rep3


title: Expt192 SL9G rpt3 reload

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66592.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1600, 27200; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.23; Parameter Scan Time = 11:57:15; Parameter PMT Volts = 520; Parameter Scan Date = 2006-01-24; Parameter Pixel Size = 10; Parameter Laser on time = 60363; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.51; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.23; Parameter Scan Time = 11:57:15; Parameter PMT Volts = 630; Parameter Scan Date = 2006-01-24; Parameter Pixel Size = 10; Parameter Laser on time = 206290; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.33; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Fetal calf 260 days, ST_C107, rep1


title: TOV21G p53-1026 transfected with miR34b duplex versus control transfected TOV21G p53-1026, 24 hours

city: Seattle

first: Lee

last: Lim

state: WA

institute: Rosetta Inpharmatics

description: Transfection of duplexes into cell lines as described in He et al., Nature, 2007

hyb_protocol: Hybridization to Agilent microarrays as described in Hughes et al, Nature Biotechnology (2001), 19(4):342-7, PMID 11283592.

scan_protocol: Agilent LP2 laser scanner

data_processing: Error model as described in Hughes et al and in US patent #6,351,712

organism: Homo sapiens

source_name: Mock transfected TOV21G p53-1026, 24 hours

label_protocol: Customized Ambion MessageAmp II

extract_protocol: Qiagen RNAeasy

source_name: TOV21G p53-1026 transfected with miR34b duplex, 24 hours


title: Fetal calf 260 days, ST_C318, rep3

description: Semitendinosus (ST) muscle from INRA95 fetal calf at 260 days of gestation (female). The animal is a homozygote for the myostatin Q204X mutation.

source_name: Fetal calf 260 days, ST_C318


title: TOV21G p53-1026 transfected with miR34a duplex versus control transfected TOV21G p53-1026, 24 hours

tag: Mock transfected TOV21G p53-1026, 24 hours

source_name: TOV21G p53-1026 transfected with miR34a duplex, 24 hours


title: TOV21G p53-1026 transfected with miR34c duplex versus control transfected TOV21G p53-1026, 24 hours

source_name: TOV21G p53-1026 transfected with miR34c duplex, 24 hours


title: Fetal calf 260 days, ST_C318, rep4


title: Expt153 So5 1 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-03/60279.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 520, 27940; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.52; Parameter Scan Time = 11:32:49; Parameter PMT Volts = 500; Parameter Scan Date = 2005-03-08; Parameter Pixel Size = 10; Parameter Laser on time = 195799; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.17; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.52; Parameter Scan Time = 11:32:49; Parameter PMT Volts = 620; Parameter Scan Date = 2005-03-08; Parameter Pixel Size = 10; Parameter Laser on time = 195521; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.21; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: TOV21G p53-1026 transfected with Luc duplex versus control transfected TOV21G p53-1026, 24 hours

source_name: TOV21G p53-1026 transfected with Luc duplex, 24 hours


title: Expt153 L6 1 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-03/60277.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 480, 27560; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.32; Parameter Scan Time = 11:15:31; Parameter PMT Volts = 510; Parameter Scan Date = 2005-03-08; Parameter Pixel Size = 10; Parameter Laser on time = 195782; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.14; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.32; Parameter Scan Time = 11:15:31; Parameter PMT Volts = 630; Parameter Scan Date = 2005-03-08; Parameter Pixel Size = 10; Parameter Laser on time = 195504; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.21; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt153 Sa5 1 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-03/60278.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 480, 27740; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.43; Parameter Scan Time = 11:24:07; Parameter PMT Volts = 500; Parameter Scan Date = 2005-03-08; Parameter Pixel Size = 10; Parameter Laser on time = 195790; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.15; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.43; Parameter Scan Time = 11:24:07; Parameter PMT Volts = 620; Parameter Scan Date = 2005-03-08; Parameter Pixel Size = 10; Parameter Laser on time = 195512; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.21; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Fetal calf 260 days, ST_C318, rep2


title: Expt168 W5 - 81A amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62309.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 20, 27870; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.93; Parameter Scan Time = 10:59:13; Parameter PMT Volts = 560; Parameter Scan Date = 2005-06-30; Parameter Pixel Size = 10; Parameter Laser on time = 224290; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.48; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.93; Parameter Scan Time = 10:59:13; Parameter PMT Volts = 600; Parameter Scan Date = 2005-06-30; Parameter Pixel Size = 10; Parameter Laser on time = 589094; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.92; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt154 So8 1 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-03/60345.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1090, 27210; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.32; Parameter Scan Time = 11:01:46; Parameter PMT Volts = 480; Parameter Scan Date = 2005-03-19; Parameter Pixel Size = 10; Parameter Laser on time = 196333; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.13; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.32; Parameter Scan Time = 11:01:46; Parameter PMT Volts = 690; Parameter Scan Date = 2005-03-19; Parameter Pixel Size = 10; Parameter Laser on time = 196049; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.19; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt168 W5 - 82A amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62308.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 0, 28040; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.91; Parameter Scan Time = 10:54:06; Parameter PMT Volts = 570; Parameter Scan Date = 2005-06-30; Parameter Pixel Size = 10; Parameter Laser on time = 224285; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.48; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.91; Parameter Scan Time = 10:54:06; Parameter PMT Volts = 600; Parameter Scan Date = 2005-06-30; Parameter Pixel Size = 10; Parameter Laser on time = 589089; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.92; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: HeLa transfected with mir34c duplex versus control transfected HeLa, 24 hours

source_name: Mock transfected HeLa, 24 hours

tag: Mock transfected HeLa, 24 hours

source_name: HeLa transfected with mir34c duplex, 24 hours


title: Fetal calf 260 days, ST_C318, rep1

source_name: Pool of 21 samples (ST muscle)


title: HeLa transfected with Luciferase duplex versus control transfected HeLa, 24 hours

source_name: HeLa transfected with Luciferase duplex, 24 hours


title: A549 p53-1026 transfected with Luc duplex versus control transfected A549 p53-1026, 24 hours

source_name: Mock transfected A549 p53-1026, 24 hours

source_name: A549 p53-1026 transfected with Luc duplex, 24 hours


title: HeLa transfected with mir34b duplex versus control transfected HeLa, 24 hours

source_name: HeLa transfected with mir34b duplex, 24 hours


title: A549 p53-1026 transfected with miR34c duplex versus control transfected A549 p53-1026, 24 hours

tag: Mock transfected A549 p53-1026, 24 hours

source_name: A549 p53-1026 transfected with miR34c duplex, 24 hours


title: DLD Dicer -/- #2 transfected with miR_34c duplex versus control transfected DLD Dicer -/- #2, 24 hours

source_name: Mock transfected DLD Dicer -/- #2, 24 hours

source_name: DLD Dicer -/- #2 transfected with miR_34c duplex, 24 hours


title: HeLa transfected with mir34a duplex versus control transfected HeLa, 24 hours

source_name: HeLa transfected with mir34a duplex, 24 hours


title: Expt168 W5 - 83A amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62301.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 0, 28040; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.82; Parameter Scan Time = 10:48:34; Parameter PMT Volts = 570; Parameter Scan Date = 2005-06-30; Parameter Pixel Size = 10; Parameter Laser on time = 224280; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.47; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.82; Parameter Scan Time = 10:48:34; Parameter PMT Volts = 600; Parameter Scan Date = 2005-06-30; Parameter Pixel Size = 10; Parameter Laser on time = 589084; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.92; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: MPTP 3

city: Los Angeles

first: Mark

middle: H.

last: Chin

address: 650 Charles E. Young Dr

department: Human Genetics

institute: UCLA

hyb_protocol: According to Manufacturer's (affymetrix) protocol

data_processing: RMA normalization using GeneSifter. (www.genesifter.net)

label: Biotin

source_name: left and right striatum, Control, METH and MPTP treated mice.

growth_protocol:
12/12hour light cycle in vivarium
70 degrees Fahrenheit

extract_protocol: Qiagen RNAeasy RNA isolation kit

tag: Strain

tag: Gender

value: Male

tag: Age

value: 56 days

tag: Tissue

value: Striatum


title: Expt192 SA9G

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/66228.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 480, 28020; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.52; Parameter Scan Time = 12:59:47; Parameter PMT Volts = 470; Parameter Scan Date = 2005-11-10; Parameter Pixel Size = 10; Parameter Laser on time = 57455; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.41; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.52; Parameter Scan Time = 12:59:47; Parameter PMT Volts = 650; Parameter Scan Date = 2005-11-10; Parameter Pixel Size = 10; Parameter Laser on time = 203380; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.35; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt168 W5 - 91A amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62300.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 40, 27880; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.79; Parameter Scan Time = 10:43:36; Parameter PMT Volts = 560; Parameter Scan Date = 2005-06-30; Parameter Pixel Size = 10; Parameter Laser on time = 224274; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.47; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.79; Parameter Scan Time = 10:43:36; Parameter PMT Volts = 600; Parameter Scan Date = 2005-06-30; Parameter Pixel Size = 10; Parameter Laser on time = 589078; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.92; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: DLD Dicer -/- #2 transfected with miR_34b duplex versus control transfected DLD Dicer -/- #2, 24 hours

tag: Mock transfected DLD Dicer -/- #2, 24 hours

source_name: DLD Dicer -/- #2 transfected with miR_34b duplex, 24 hours