title: Expt192 E8M

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/66225.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 480, 27350; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.23; Parameter Scan Time = 12:29:42; Parameter PMT Volts = 460; Parameter Scan Date = 2005-11-10; Parameter Pixel Size = 10; Parameter Laser on time = 57426; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.40; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.23; Parameter Scan Time = 12:29:42; Parameter PMT Volts = 630; Parameter Scan Date = 2005-11-10; Parameter Pixel Size = 10; Parameter Laser on time = 203351; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.36; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: DLD Dicer -/- #2 transfected with miR_34a duplex versus control transfected DLD Dicer -/- #2, 24 hours

status: Public on Jul 17 2007

type: RNA

city: Seattle

first: Lee

last: Lim

state: WA

country: USA

institute: Rosetta Inpharmatics

description: Transfection of duplexes into cell lines as described in He et al., Nature, 2007

hyb_protocol: Hybridization to Agilent microarrays as described in Hughes et al, Nature Biotechnology (2001), 19(4):342-7, PMID 11283592.

scan_protocol: Agilent LP2 laser scanner

data_processing: Error model as described in Hughes et al and in US patent #6,351,712

molecule: total RNA

organism: Homo sapiens

source_name: Mock transfected DLD Dicer -/- #2, 24 hours

label_protocol: Customized Ambion MessageAmp II

extract_protocol: Qiagen RNAeasy

source_name: DLD Dicer -/- #2 transfected with miR_34a duplex, 24 hours


title: DLD Dicer -/- #2 transfected with Luc duplex versus control transfected DLD Dicer -/- #2, 24 hours

tag: Mock transfected DLD Dicer -/- #2, 24 hours

source_name: DLD Dicer -/- #2 transfected with Luc duplex, 24 hours


title: TOV21G H1-term transfected with miR34c duplex versus control transfected TOV21G H1-term, 24 hours

source_name: Mock transfected TOV21G H1-term, 24 hours

source_name: TOV21G H1-term transfected with miR34c duplex, 24 hours


title: Expt192 MO3

type: genomic

city: Stanford

last: Stanford Microarray Database

state: CA

address: 300 Pasteur Drive

department: Stanford University, School of Medicine

institute: Stanford Microarray Database (SMD)

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/66224.gif

hyb_protocol: not provided

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 480, 27350; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.11; Parameter Scan Time = 12:19:06; Parameter PMT Volts = 480; Parameter Scan Date = 2005-11-10; Parameter Pixel Size = 10; Parameter Laser on time = 57414; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.37; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.11; Parameter Scan Time = 12:19:06; Parameter PMT Volts = 640; Parameter Scan Date = 2005-11-10; Parameter Pixel Size = 10; Parameter Laser on time = 203339; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.35; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller

data_processing: VALUE is Log (base 2) of the ratio of the median of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

molecule: genomic DNA

organism: Vibrio cholerae

label_protocol: not provided

extract_protocol: not provided


title: TOV21G H1-term transfected with miR34a duplex versus control transfected TOV21G H1-term, 24 hours

tag: Mock transfected TOV21G H1-term, 24 hours

source_name: TOV21G H1-term transfected with miR34a duplex, 24 hours


title: MPTP 1

city: Los Angeles

first: Mark

middle: H.

last: Chin

address: 650 Charles E. Young Dr

department: Human Genetics

institute: UCLA

hyb_protocol: According to Manufacturer's (affymetrix) protocol

data_processing: RMA normalization using GeneSifter. (www.genesifter.net)

label: Biotin

organism: Mus musculus

source_name: left and right striatum, Control, METH and MPTP treated mice.

growth_protocol:
12/12hour light cycle in vivarium
70 degrees Fahrenheit

extract_protocol: Qiagen RNAeasy RNA isolation kit

tag: Strain

tag: Gender

value: Male

tag: Age

value: 56 days

tag: Tissue

value: Striatum


title: METH 3

scan_protocol: According to Manufacturer's (affymetrix) protocol


title: TOV21G H1-term transfected with Luc duplex versus control transfected TOV21G H1-term, 24 hours

source_name: TOV21G H1-term transfected with Luc duplex, 24 hours


title: MPTP 2

label_protocol: According to Manufacturer's (affymetrix) protocol


title: A549 p53-1026 transfected with miR34a duplex versus control transfected A549 p53-1026, 24 hours

source_name: Mock transfected A549 p53-1026, 24 hours

source_name: A549 p53-1026 transfected with miR34a duplex, 24 hours


title: Expt192 O395

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/66223.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 480, 27350; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.00; Parameter Scan Time = 12:08:29; Parameter PMT Volts = 460; Parameter Scan Date = 2005-11-10; Parameter Pixel Size = 10; Parameter Laser on time = 57405; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.36; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.00; Parameter Scan Time = 12:08:29; Parameter PMT Volts = 630; Parameter Scan Date = 2005-11-10; Parameter Pixel Size = 10; Parameter Laser on time = 203330; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.34; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt192 A1552

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66536.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1440, 27080; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.02; Parameter Scan Time = 14:44:06; Parameter PMT Volts = 610; Parameter Scan Date = 2006-01-13; Parameter Pixel Size = 10; Parameter Laser on time = 260899; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.37; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.02; Parameter Scan Time = 14:44:06; Parameter PMT Volts = 370; Parameter Scan Date = 2006-01-13; Parameter Pixel Size = 10; Parameter Laser on time = 625809; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.16; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: METH 2


title: HCT116 Dicer -/- #2 transfected with miR_34b duplex versus control transfected HCT116 Dicer -/- #2, 24 hours

source_name: Mock transfected HCT116 Dicer -/- #2, 24 hours

source_name: HCT116 Dicer -/- #2 transfected with miR_34b duplex, 24 hours


title: Expt192 N16961rep

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/66221.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 480, 27560; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.84; Parameter Scan Time = 11:55:39; Parameter PMT Volts = 440; Parameter Scan Date = 2005-11-10; Parameter Pixel Size = 10; Parameter Laser on time = 57392; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.34; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.84; Parameter Scan Time = 11:55:39; Parameter PMT Volts = 630; Parameter Scan Date = 2005-11-10; Parameter Pixel Size = 10; Parameter Laser on time = 203317; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.34; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt192 92A1552

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/66222.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 480, 27350; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.92; Parameter Scan Time = 12:01:43; Parameter PMT Volts = 460; Parameter Scan Date = 2005-11-10; Parameter Pixel Size = 10; Parameter Laser on time = 57397; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.35; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.92; Parameter Scan Time = 12:01:43; Parameter PMT Volts = 630; Parameter Scan Date = 2005-11-10; Parameter Pixel Size = 10; Parameter Laser on time = 203322; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.33; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: METH 1


title: TOV21G H1-term transfected with miR34b duplex versus control transfected TOV21G H1-term, 24 hours

source_name: TOV21G H1-term transfected with miR34b duplex, 24 hours


title: Control 3


title: A549 H1-term transfected with miR34c duplex versus control transfected A549 H1-term, 24 hours

source_name: Mock transfected A549 H1-term, 24 hours

tag: Mock transfected A549 H1-term, 24 hours

source_name: A549 H1-term transfected with miR34c duplex, 24 hours


title: Expt192 W5-83

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/66220.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 480, 27630; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.27; Parameter Scan Time = 12:50:27; Parameter PMT Volts = 520; Parameter Scan Date = 2005-11-17; Parameter Pixel Size = 10; Parameter Laser on time = 58332; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.61; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.27; Parameter Scan Time = 12:50:27; Parameter PMT Volts = 640; Parameter Scan Date = 2005-11-17; Parameter Pixel Size = 10; Parameter Laser on time = 204257; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.37; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Fetal calf 260 days, ST_C107, rep2

city: Saint-Genès-Champanelle

first: Isabelle

last: CASSAR-MALEK

address: Theix

department: Centre de Clermont-Fd/Theix

country: France

institute: INRA

description: Semitendinosus (ST) muscle from INRA95 fetal calf at 260 days of gestation (male). The animal is a homozygote for the myostatin Q204X mutation.

data_processing: After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

organism: Bos taurus

source_name: Fetal calf 260 days, ST_C107

tag: INRA95, Fetal calf 260 days p.c., Double-Muscled

source_name: Pool of 21 samples  (ST muscle )

tag: Pool of 16 samples of 24 months charolais heifers and of 5 samples of charolais fetal calf aged 260 days (ST muscle )


title: HCT116 Dicer -/- #2 transfected with Luc duplex versus control transfected HCT116 Dicer -/- #2, 24 hours

tag: Mock transfected HCT116 Dicer -/- #2, 24 hours

source_name: HCT116 Dicer -/- #2 transfected with Luc duplex, 24 hours


title: HCT116 Dicer -/- #2 transfected with miR_34a duplex versus control transfected HCT116 Dicer -/- #2, 24 hours

source_name: HCT116 Dicer -/- #2 transfected with miR_34a duplex, 24 hours


title: Control 2


title: A549 H1-term transfected with miR34b duplex versus control transfected A549 H1-term, 24 hours

source_name: A549 H1-term transfected with miR34b duplex, 24 hours


title: A549 H1-term transfected with miR34a duplex versus control transfected A549 H1-term, 24 hours

source_name: A549 H1-term transfected with miR34a duplex, 24 hours


title: Expt150 W10G 1 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-02/59362.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 240, 26960; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.76; Parameter Scan Time = 10:07:50; Parameter PMT Volts = 500; Parameter Scan Date = 2005-02-18; Parameter Pixel Size = 10; Parameter Laser on time = 194324; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.14; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.76; Parameter Scan Time = 10:07:50; Parameter PMT Volts = 640; Parameter Scan Date = 2005-02-18; Parameter Pixel Size = 10; Parameter Laser on time = 194048; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.19; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Expt150 W9G  1 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-02/59361.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 680, 28010; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.89; Parameter Scan Time = 10:31:18; Parameter PMT Volts = 520; Parameter Scan Date = 2005-02-18; Parameter Pixel Size = 10; Parameter Laser on time = 194346; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.17; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.89; Parameter Scan Time = 10:31:18; Parameter PMT Volts = 660; Parameter Scan Date = 2005-02-18; Parameter Pixel Size = 10; Parameter Laser on time = 194071; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.19; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Control 1

data_processing: RMA normalization using GeneSifter.  (www.genesifter.net)

label: biotin


title: A549 H1-term transfected with Luc duplex versus control transfected A549 H1-term, 24 hours

source_name: A549 H1-term transfected with Luc duplex, 24 hours


title: HCT116 Dicer -/- #2 transfected with miR_34c duplex versus control transfected HCT116 Dicer -/- #2, 24 hours

source_name: HCT116 Dicer -/- #2 transfected with miR_34c duplex, 24 hours


title: A549 p53-1026 transfected with miR34b duplex versus control transfected A549 p53-1026, 24 hours

tag: Mock transfected A549 p53-1026, 24 hours

source_name: A549 p53-1026 transfected with miR34b duplex, 24 hours


title: Subject code A8EB

status: Public on Jul 16 2007

city: Novato

first: Simon

last: Melov

address: 8001 Redwood Blvd

institute: Buck Institute for Research on Aging

hyb_protocol: Labeled cRNA samples that passed this second round of quality control were then hybridized to Human Ref-8 BeadChips (Illumina) according to the manufacturer's instructions (approximately 23,000 genes), using equipment specified by the manufacturer (Illumina). Briefly, 850 ng biotin-labeled cRNA in 11.3 µl nuclease-free water was adjusted to 34 µl through the addition of 22.7 µl of 5:3 HybE1 buffer/formamide. The sample was heated at 65°C for 5 min, allowed to cool to room temperature, and then immediately added to a single array of an 8-array Human Ref-8 BeadChip. Once all 8 samples were added to each BeadChip, it was sealed in a Hyb Cartridge and incubated for 16 h at 55°C with rotation in an Illumina hybridization oven (rotation setting 5). Following overnight hybridization, BeadChips were moved to a slide rack and serially washed using gentle rotation in glass staining dishes filled with a) 250 ml Illumina Wash Buffer×5 min, b) 250 ml 100% ethanol×10 min, c) 250 ml Illumina Wash Buffer×2 min. BeadChips were then blocked for 10 min in 4 ml Block E1 buffer (Illumina), followed by staining for 10 min in 1 µg/ml Streptavidin-Cy3 conjugate (GE Healthcare) in Block E1 buffer. Stained BeadChips were finally washed using gentle rotation in a glass staining dish filled with 250 ml Illumina Wash Buffer×5 min. BeadChips were dried by centrifugation at 280×g for 4 min and stored in a light-tight box until reading.

scan_protocol: Processed arrays were read using a BeadStation array reader (Illumina) according to the manufacturer's instructions. Scan settings were for single color (green) scanning: Factor = 2.506, PMT = 561, Filter = 100%.

data_processing: Raw data (see related publication for normalization procedure)

label_protocol: The resulting total RNA samples were further assessed for integrity prior to chipping using a Nanodrop Spectrophotometer and the Agilent Bioanalyzer Nano Chip System. Samples which passed this initial quality control assurance step were then amplified one round, using an RNA Amplification Kit (Ambion) according to the manufacturer's instructions. The resulting purified cDNA product of was resuspended in 18 µl and dried down using a speedvac. This was then converted to cRNA using an in vitro transcription kit according to the manufacturer's instructions (Roche), and again assessed for quality by using the Nanodrop and Bioanalyzer

extract_protocol: Total RNA was extracted from human muscle with TRIzol reagent (Invitrogen, Carlsbad, CA). Briefly, 25–50 mg of muscle was homogenized in 1 ml of TRIzol reagent at 4°C, left at room temperature for 5–10 min, followed by addition of 0.2 ml of chloroform, vortexing for 15 s, and centrifugation @ 12,000 rpm @ 4°C for 15 min. The supernatant was transferred to a fresh tube and mixed with 0.5 ml of isoproponal ethanol, stood at ~22°C for 10 min, and centrifuged at 12,000 rpm at 4°C for 10 min. The RNA pellet was washed twice with 0.5 ml of 75% ethanol, air dried and dissolved in 14 µl of Depc-treated ddH2O with 2 µl aliquots stored at −80°C. The concentration and purity of the RNA was determined using a UV spectrophotometer (Shimadzu UV-1201; Mandel Scientific, Guelph, Ontario) at the absorbance of 260/280 nm. Measurements were done in duplicate and had an average coefficient of variation (CV) of <10%. The average purity (OD260/OD280) of the samples was >1.5 before DNAase treatment. RNA integrity was assessed in a randomly chosen subset of samples using agarose gel electrophoresis, and the OD ratio of 28S to 18S rRNA was consistently greater than 1 for each sample.

value: F

tag: Chip ID

tag: Position

value: B

tag: Sample Group

value: OE


title: Subject code A20EB

value: M

value: G


title: Subject code A22EB

value: C


title: Subject code A2EB

value: A


title: Subject code A10EB


title: Subject code A19EB


title: Subject code A12EB

value: D


title: Subject code A14EB


title: Subject code A11EB


title: Subject code A7

value: O


title: Subject code A25EB

value: E


title: Subject code A4EB

value: H


title: Subject code A6EB


title: Subject code A21


title: Subject code A5EB


title: Subject code A19


title: Subject code A12


title: Subject code A23


title: Subject code A22


title: Subject code A8


title: Subject code A4


title: Subject code A18


title: Subject code A17EB


title: Subject code A11


title: Subject code A20


title: Subject code A24


title: Subject code A10


title: Subject code A16


title: Expt192 SA10G

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/66229.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 480, 28020; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.64; Parameter Scan Time = 13:08:52; Parameter PMT Volts = 470; Parameter Scan Date = 2005-11-10; Parameter Pixel Size = 10; Parameter Laser on time = 57465; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.40; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.64; Parameter Scan Time = 13:08:52; Parameter PMT Volts = 630; Parameter Scan Date = 2005-11-10; Parameter Pixel Size = 10; Parameter Laser on time = 203390; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.35; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Subject code A3


title: Subject code A1


title: Subject code A25


title: Subject code A2


title: Subject code A6


title: Subject code A36

value: Y


title: Subject code A9


title: Expt155 So8 2 amp

description:
Simple annotation: Genome comparison, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2005-03/60411.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1090, 27920; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Michael,,Miller Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.27; Parameter Scan Time = 11:06:11; Parameter PMT Volts = 450; Parameter Scan Date = 2005-03-22; Parameter Pixel Size = 10; Parameter Laser on time = 196543; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 2.08; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.27; Parameter Scan Time = 11:06:11; Parameter PMT Volts = 730; Parameter Scan Date = 2005-03-22; Parameter Pixel Size = 10; Parameter Laser on time = 196259; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [48444]; Parameter Laser Power = 1.19; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Michael,,Miller


title: Subject code A5


title: Subject code A39

source_name: CC


title: Subject code A38


title: Subject code A17


title: Subject code A45

source_name: JB


title: Subject code A47

source_name: KT


title: Subject code A14


title: Subject code A46

source_name: JS


title: Subject code A27


title: Subject code A49

source_name: MP


title: Subject code A42

source_name: EG


title: Subject code A28


title: Subject code A13


title: Subject code A33


title: Subject code A31


title: Subject code A37


title: Subject code A48

source_name: MD


title: Subject code A51

source_name: TZ


title: Subject code A40

source_name: CW


title: Subject code A43

source_name: EP


title: Subject code A15


title: Subject code A44

source_name: JA


title: Subject code A35


title: Subject code A34


title: Subject code A26


title: Subject code A50

source_name: TC


title: PPAR in Rat  Quad_d06_Retinoic acid_025.0mkd_#1325

status: Public on Jul 12 2007

city: Rahway

first: Olivia

last: Fong

state: NJ

department: Molecular Profiling

institute: Merck & Co.

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_Retinoic acid_025.0mkd_#1325

hyb_protocol: All treated individual samples were hybridized against a pool of RNA from time-matched (concurrent) control animals (e.g., animals treated for 3 days were hybridized against a pool of animals dosed for 3 days with vehicle). The ratio of individual animal expression to control pool expression was used for all data analysis. All hybridizations (Hughes et al., 2001, PMID: 11283592) were performed in duplicate, with fluor reversal (Cy3 or Cy5) in the second hybridization.

scan_protocol: Arrays were scanned using a DNA microarray scanner (Model G2565AA; Agilent Technologies), and feature intensities (background subtracted) were determined using feature extraction software developed at Rosetta.

data_processing: Local background correction

organism: Rattus norvegicus

source_name: Quad

label_protocol: Cy3- or Cy5-labeled cRNA was created from total RNA using reverse transcription followed by in vitro transcription and a two-step label incorporation method (Hughes et al., 2001, PMID: 11283592).

extract_protocol: tissues were collected for RNA extraction (snap frozen in liquid nitrogen). RNA was extracted from tissues using a combination of TRIzol RNA extraction (Invitrogen Life Technologies, Carlsbad, CA) with the RNeasy RNA extraction kit (Qiagen, Valencia, CA). Briefly, tissue was incubated in TRIzol reagent (1 ml/100 mg tissue) for 15 s at room temperature and homogenized with a Polytron homogenizer followed by an ~ 5-min room temperature incubation. After the addition of 100 µl chloroform, 500 µl of homogenate was mixed by shaking for 15 s, incubated at room temperature for 2–3 min, and centrifuged at 10,000 x g for 10 min at 2–8°C. The supernatant was used as the input material for the RNeasy RNA extraction kit and RNA isolated according to the manufacturer's protocol. Following isolation, RNA quantity, purity, and quality were determined using a SpectraMax Plus384 (Molecular Devices, Sunnyvale, CA) spectrophotometer and a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).

tag: Sprague Dawley CD, Approximately 8 wks at the onset of dosing, Vehicle Treated, Quad

label_protocol: same as for channel_1

extract_protocol: same as for channel_1

tag: Sprague Dawley CD, Approximately 8 wks at the onset of dosing, Fenofibrate; Wy-14,643; bezafibrate; rosiglitazone; all trans retinoic acid, Quad


title: PPAR in Rat  Quad_d06_Rosiglitazone_100.0mkd_#1383

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_Rosiglitazone_100.0mkd_#1383


title: Subject code A32


title: Subject code A41

source_name: DF


title: PPAR in Rat  Quad_d06_Wy-14;643_100.0mkd_#1215

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_Wy-14;643_100.0mkd_#1215


title: Subject code A29


title: Subject code A30


title: PPAR in Rat  Quad_d06_Wy-14;643_100.0mkd_#1214

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_Wy-14;643_100.0mkd_#1214


title: PPAR in Rat  Quad_d06_Bezafibrate_250.0mkd_#1271

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_Bezafibrate_250.0mkd_#1271


title: PPAR in Rat  Quad_d06_Retinoic acid_025.0mkd_#1328

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_Retinoic acid_025.0mkd_#1328


title: PPAR in Rat  Quad_d06_Retinoic acid_025.0mkd_#1326

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_Retinoic acid_025.0mkd_#1326


title: PPAR in Rat  Quad_d06_Wy-14;643_100.0mkd_#1213

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_Wy-14;643_100.0mkd_#1213


title: PPAR in Rat  Quad_d06_Rosiglitazone_100.0mkd_#1382

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_Rosiglitazone_100.0mkd_#1382


title: PPAR in Rat  Quad_d06_Bezafibrate_250.0mkd_#1270

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_Bezafibrate_250.0mkd_#1270


title: PPAR in Rat  Quad_d06_Fenofibrate_400.0mkd_#1160

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_Fenofibrate_400.0mkd_#1160


title: PPAR in Rat  Quad_d06_Fenofibrate_400.0mkd_#1159

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_Fenofibrate_400.0mkd_#1159


title: PPAR in Rat  Quad_d06_Fenofibrate_400.0mkd_#1157

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_Fenofibrate_400.0mkd_#1157


title: PPAR in Rat  Quad_d06_Bezafibrate_250.0mkd_#1272

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_Bezafibrate_250.0mkd_#1272


title: PPAR in Rat  Quad_d06_ vehicle control_000.0mkd_#1073

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_ vehicle control_000.0mkd_#1073


title: PPAR in Rat  Quad_d06_ vehicle control_000.0mkd_#1074

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_ vehicle control_000.0mkd_#1074


title: PPAR in Rat  Quad_d06_ vehicle control_000.0mkd_#1072

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_ vehicle control_000.0mkd_#1072


title: PPAR in Rat  Quad_d06_Bezafibrate_250.0mkd_#1269

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_Bezafibrate_250.0mkd_#1269


title: PPAR in Rat  Quad_d06_ vehicle control_000.0mkd_#1075

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_ vehicle control_000.0mkd_#1075


title: PPAR in Rat  Quad_d06_ vehicle control_000.0mkd_#1079

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_ vehicle control_000.0mkd_#1079


title: PPAR in Rat  Quad_d06_ vehicle control_000.0mkd_#1071

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_ vehicle control_000.0mkd_#1071


title: PPAR in Rat  Quad_d06_ vehicle control_000.0mkd_#1080

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_ vehicle control_000.0mkd_#1080


title: PPAR in Rat  Quad_d06_ vehicle control_000.0mkd_#1068

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_ vehicle control_000.0mkd_#1068


title: PPAR in Rat  Quad_d05_Rosiglitazone_100.0mkd_#1380

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Rosiglitazone_100.0mkd_#1380


title: PPAR in Rat  Quad_d06_ vehicle control_000.0mkd_#1076

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_ vehicle control_000.0mkd_#1076


title: PPAR in Rat  Quad_d06_ vehicle control_000.0mkd_#1067

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_ vehicle control_000.0mkd_#1067


title: PPAR in Rat  Quad_d05_Wy-14;643_100.0mkd_#1210

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Wy-14;643_100.0mkd_#1210


title: PPAR in Rat  Quad_d05_Wy-14;643_100.0mkd_#1212

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Wy-14;643_100.0mkd_#1212


title: PPAR in Rat  Quad_d06_ vehicle control_000.0mkd_#1066

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_ vehicle control_000.0mkd_#1066


title: PPAR in Rat  Quad_d05_Retinoic acid_025.0mkd_#1322

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Retinoic acid_025.0mkd_#1322


title: PPAR in Rat  Quad_d05_Rosiglitazone_100.0mkd_#1379

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Rosiglitazone_100.0mkd_#1379


title: PPAR in Rat  Quad_d05_Wy-14;643_100.0mkd_#1211

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Wy-14;643_100.0mkd_#1211


title: PPAR in Rat  Quad_d05_Fenofibrate_400.0mkd_#1153

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Fenofibrate_400.0mkd_#1153


title: PPAR in Rat  Quad_d05_Retinoic acid_025.0mkd_#1323

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Retinoic acid_025.0mkd_#1323


title: PPAR in Rat  Quad_d05_Fenofibrate_400.0mkd_#1154

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Fenofibrate_400.0mkd_#1154


title: PPAR in Rat  Quad_d05_Bezafibrate_250.0mkd_#1267

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Bezafibrate_250.0mkd_#1267


title: PPAR in Rat  Quad_d05_Fenofibrate_400.0mkd_#1155

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Fenofibrate_400.0mkd_#1155


title: PPAR in Rat  Quad_d05_Rosiglitazone_100.0mkd_#1378

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Rosiglitazone_100.0mkd_#1378


title: PPAR in Rat  Quad_d05_Bezafibrate_250.0mkd_#1265

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Bezafibrate_250.0mkd_#1265


title: PPAR in Rat  Quad_d05_Retinoic acid_025.0mkd_#1324

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Retinoic acid_025.0mkd_#1324


title: PPAR in Rat  Quad_d05_Bezafibrate_250.0mkd_#1268

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Bezafibrate_250.0mkd_#1268


title: PPAR in Rat  Quad_d05_Rosiglitazone_100.0mkd_#1377

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Rosiglitazone_100.0mkd_#1377


title: PPAR in Rat  Quad_d05_Wy-14;643_100.0mkd_#1209

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Wy-14;643_100.0mkd_#1209


title: PPAR in Rat  Quad_d05_Bezafibrate_250.0mkd_#1266

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Bezafibrate_250.0mkd_#1266


title: PPAR in Rat  Quad_d05_Retinoic acid_025.0mkd_#1321

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_Retinoic acid_025.0mkd_#1321


title: PPAR in Rat  Quad_d06_Retinoic acid_025.0mkd_#1327

description: Quad_d06_ vehicle control pool_000.0mkd_n=11 vs. Quad_d06_Retinoic acid_025.0mkd_#1327


title: PPAR in Rat  Quad_d05_ vehicle control_000.0mkd_#1050

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_ vehicle control_000.0mkd_#1050


title: PPAR in Rat  Quad_d05_ vehicle control_000.0mkd_#1051

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_ vehicle control_000.0mkd_#1051


title: PPAR in Rat  Quad_d05_ vehicle control_000.0mkd_#1056

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_ vehicle control_000.0mkd_#1056


title: PPAR in Rat  Quad_d05_ vehicle control_000.0mkd_#1049

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_ vehicle control_000.0mkd_#1049


title: PPAR in Rat  Quad_d05_ vehicle control_000.0mkd_#1058

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_ vehicle control_000.0mkd_#1058


title: PPAR in Rat  Quad_d05_ vehicle control_000.0mkd_#1053

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_ vehicle control_000.0mkd_#1053


title: PPAR in Rat  Quad_d05_ vehicle control_000.0mkd_#1054

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_ vehicle control_000.0mkd_#1054


title: PPAR in Rat  Quad_d05_ vehicle control_000.0mkd_#1062

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_ vehicle control_000.0mkd_#1062


title: PPAR in Rat  Quad_d05_ vehicle control_000.0mkd_#1057

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_ vehicle control_000.0mkd_#1057


title: PPAR in Rat  Quad_d05_ vehicle control_000.0mkd_#1060

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_ vehicle control_000.0mkd_#1060


title: PPAR in Rat  Quad_d04_Wy-14;643_100.0mkd_#1205

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_Wy-14;643_100.0mkd_#1205


title: PPAR in Rat  Quad_d04_Wy-14;643_100.0mkd_#1206

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_Wy-14;643_100.0mkd_#1206


title: PPAR in Rat  Quad_d05_ vehicle control_000.0mkd_#1055

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_ vehicle control_000.0mkd_#1055


title: PPAR in Rat  Quad_d05_ vehicle control_000.0mkd_#1059

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_ vehicle control_000.0mkd_#1059


title: PPAR in Rat  Quad_d05_ vehicle control_000.0mkd_#1063

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_ vehicle control_000.0mkd_#1063


title: PPAR in Rat  Quad_d04_Rosiglitazone_100.0mkd_#1373

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_Rosiglitazone_100.0mkd_#1373


title: PPAR in Rat  Quad_d05_ vehicle control_000.0mkd_#1064

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_ vehicle control_000.0mkd_#1064


title: PPAR in Rat  Quad_d04_Rosiglitazone_100.0mkd_#1374

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_Rosiglitazone_100.0mkd_#1374


title: PPAR in Rat  Quad_d04_Rosiglitazone_100.0mkd_#1375

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_Rosiglitazone_100.0mkd_#1375


title: PPAR in Rat  Quad_d05_ vehicle control_000.0mkd_#1052

description: Quad_d05_ vehicle control pool_000.0mkd_n=15 vs. Quad_d05_ vehicle control_000.0mkd_#1052


title: PPAR in Rat  Quad_d04_Bezafibrate_250.0mkd_#1261

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_Bezafibrate_250.0mkd_#1261


title: PPAR in Rat  Quad_d04_Fenofibrate_400.0mkd_#1151

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_Fenofibrate_400.0mkd_#1151


title: PPAR in Rat  Quad_d04_Retinoic acid_025.0mkd_#1319

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_Retinoic acid_025.0mkd_#1319


title: PPAR in Rat  Quad_d04_Bezafibrate_250.0mkd_#1264

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_Bezafibrate_250.0mkd_#1264


title: PPAR in Rat  Quad_d04_Fenofibrate_400.0mkd_#1149

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_Fenofibrate_400.0mkd_#1149


title: PPAR in Rat  Quad_d04_Fenofibrate_400.0mkd_#1152

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_Fenofibrate_400.0mkd_#1152


title: PPAR in Rat  Quad_d04_Retinoic acid_025.0mkd_#1320

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_Retinoic acid_025.0mkd_#1320


title: PPAR in Rat  Quad_d04_Retinoic acid_025.0mkd_#1318

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_Retinoic acid_025.0mkd_#1318


title: PPAR in Rat  Quad_d04_Bezafibrate_250.0mkd_#1262

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_Bezafibrate_250.0mkd_#1262


title: PPAR in Rat  Quad_d04_Fenofibrate_400.0mkd_#1150

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_Fenofibrate_400.0mkd_#1150


title: PPAR in Rat  Quad_d04_Retinoic acid_025.0mkd_#1317

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_Retinoic acid_025.0mkd_#1317


title: PPAR in Rat  Quad_d04_ vehicle control_000.0mkd_#1040

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_ vehicle control_000.0mkd_#1040


title: PPAR in Rat  Quad_d04_ vehicle control_000.0mkd_#1048

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_ vehicle control_000.0mkd_#1048


title: PPAR in Rat  Quad_d04_ vehicle control_000.0mkd_#1043

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_ vehicle control_000.0mkd_#1043


title: PPAR in Rat  Quad_d04_ vehicle control_000.0mkd_#1035

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_ vehicle control_000.0mkd_#1035


title: PPAR in Rat  Quad_d04_Bezafibrate_250.0mkd_#1263

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_Bezafibrate_250.0mkd_#1263


title: PPAR in Rat  Quad_d04_ vehicle control_000.0mkd_#1047

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_ vehicle control_000.0mkd_#1047


title: PPAR in Rat  Quad_d04_ vehicle control_000.0mkd_#1041

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_ vehicle control_000.0mkd_#1041


title: PPAR in Rat  Quad_d04_ vehicle control_000.0mkd_#1036

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_ vehicle control_000.0mkd_#1036


title: PPAR in Rat  Quad_d04_ vehicle control_000.0mkd_#1044

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_ vehicle control_000.0mkd_#1044


title: PPAR in Rat  Quad_d04_ vehicle control_000.0mkd_#1033

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_ vehicle control_000.0mkd_#1033


title: PPAR in Rat  Quad_d04_ vehicle control_000.0mkd_#1045

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_ vehicle control_000.0mkd_#1045


title: PPAR in Rat  Quad_Rosiglitazone_d3_100.0mkd_#4

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_Rosiglitazone_d3_100.0mkd_#4


title: PPAR in Rat  Quad_d03_Wy-14,643_100.0mkd_#1201

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_Wy-14,643_100.0mkd_#1201


title: PPAR in Rat  Quad_d04_ vehicle control_000.0mkd_#1038

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_ vehicle control_000.0mkd_#1038


title: PPAR in Rat  Quad_d04_ vehicle control_000.0mkd_#1039

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_ vehicle control_000.0mkd_#1039


title: PPAR in Rat  Quad_Rosiglitazone_d3_100.0mkd_#3

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_Rosiglitazone_d3_100.0mkd_#3


title: PPAR in Rat  Quad_d04_ vehicle control_000.0mkd_#1034

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_ vehicle control_000.0mkd_#1034


title: PPAR in Rat  Quad_d03_Wy-14,643_100.0mkd_#1203

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_Wy-14,643_100.0mkd_#1203


title: PPAR in Rat  Quad_d03_Retinoic acid_025.0mkd_#1315

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_Retinoic acid_025.0mkd_#1315


title: PPAR in Rat  Quad_Rosiglitazone_d3_100.0mkd_#2

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_Rosiglitazone_d3_100.0mkd_#2


title: PPAR in Rat  Quad_Rosiglitazone_d3_100.0mkd_#1

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_Rosiglitazone_d3_100.0mkd_#1


title: PPAR in Rat  Quad_d04_ vehicle control_000.0mkd_#1042

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_ vehicle control_000.0mkd_#1042


title: PPAR in Rat  Quad_d03_Wy-14,643_100.0mkd_#1204

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_Wy-14,643_100.0mkd_#1204


title: PPAR in Rat  Quad_d03_Retinoic acid_025.0mkd_#1313

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_Retinoic acid_025.0mkd_#1313


title: PPAR in Rat  Quad_d03_Retinoic acid_025.0mkd_#1314

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_Retinoic acid_025.0mkd_#1314


title: PPAR in Rat  Quad_d03_Retinoic acid_025.0mkd_#1316

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_Retinoic acid_025.0mkd_#1316


title: PPAR in Rat  Quad_d03_Fenofibrate_400.0mkd_#1148

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_Fenofibrate_400.0mkd_#1148


title: PPAR in Rat  Quad_d03_Bezafibrate_250.0mkd_#1258

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_Bezafibrate_250.0mkd_#1258


title: PPAR in Rat  Quad_d03_Fenofibrate_400.0mkd_#1147

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_Fenofibrate_400.0mkd_#1147


title: PPAR in Rat  Quad_d03_Fenofibrate_400.0mkd_#1145

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_Fenofibrate_400.0mkd_#1145


title: PPAR in Rat  Quad_d03_Fenofibrate_400.0mkd_#1146

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_Fenofibrate_400.0mkd_#1146


title: PPAR in Rat  Quad_d04_ vehicle control_000.0mkd_#1037

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_ vehicle control_000.0mkd_#1037


title: PPAR in Rat  Quad_d03_ vehicle control_000.0mkd_#1018

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_ vehicle control_000.0mkd_#1018


title: PPAR in Rat  Quad_d03_ vehicle control_000.0mkd_#1024

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_ vehicle control_000.0mkd_#1024


title: PPAR in Rat  Quad_d03_ vehicle control_000.0mkd_#1020

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_ vehicle control_000.0mkd_#1020


title: PPAR in Rat  Quad_d02_Wy-14;643_100.0mkd_#1197

description: Quad_d02_ vehicle control pool_000.0mkd_n=14 vs. Quad_d02_Wy-14;643_100.0mkd_#1197


title: PPAR in Rat  Quad_d03_ vehicle control_000.0mkd_#1026

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_ vehicle control_000.0mkd_#1026


title: PPAR in Rat  Quad_d03_Bezafibrate_250.0mkd_#1260

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_Bezafibrate_250.0mkd_#1260


title: PPAR in Rat  Quad_d03_ vehicle control_000.0mkd_#1028

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_ vehicle control_000.0mkd_#1028


title: PPAR in Rat  Quad_d03_ vehicle control_000.0mkd_#1019

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_ vehicle control_000.0mkd_#1019


title: PPAR in Rat  Quad_d02_Wy-14;643_100.0mkd_#1200

description: Quad_d02_ vehicle control pool_000.0mkd_n=14 vs. Quad_d02_Wy-14;643_100.0mkd_#1200


title: PPAR in Rat  Quad_d03_ vehicle control_000.0mkd_#1027

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_ vehicle control_000.0mkd_#1027


title: PPAR in Rat  Quad_d02_Wy-14;643_100.0mkd_#1199

description: Quad_d02_ vehicle control pool_000.0mkd_n=14 vs. Quad_d02_Wy-14;643_100.0mkd_#1199


title: PPAR in Rat  Soleus_d06_Wy-14;643_100.0mkd_#1216

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Wy-14;643_100.0mkd_#1216

source_name: Soleus

tag: Sprague Dawley CD, Approximately 8 wks at the onset of dosing, Vehicle Treated, Soleus

tag: Sprague Dawley CD, Approximately 8 wks at the onset of dosing, Fenofibrate; Wy-14,643; bezafibrate; rosiglitazone; all trans retinoic acid, Soleus


title: PPAR in Rat  Quad_d02_Rosiglitazone_100.0mkd_#1367

description: Quad_d02_ vehicle control pool_000.0mkd_n=14 vs. Quad_d02_Rosiglitazone_100.0mkd_#1367


title: PPAR in Rat  Soleus_d06_Rosiglitazone_100.0mkd_#1383

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Rosiglitazone_100.0mkd_#1383


title: PPAR in Rat  Quad_d02_Wy-14;643_100.0mkd_#1198

description: Quad_d02_ vehicle control pool_000.0mkd_n=14 vs. Quad_d02_Wy-14;643_100.0mkd_#1198


title: PPAR in Rat  Soleus_d06_Wy-14;643_100.0mkd_#1215

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Wy-14;643_100.0mkd_#1215


title: PPAR in Rat  Soleus_d06_Rosiglitazone_100.0mkd_#1382

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Rosiglitazone_100.0mkd_#1382


title: PPAR in Rat  Soleus_d06_Retinoic acid_025.0mkd_#1328

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Retinoic acid_025.0mkd_#1328


title: PPAR in Rat  Soleus_d06_Retinoic acid_025.0mkd_#1327

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Retinoic acid_025.0mkd_#1327


title: PPAR in Rat  Soleus_d06_Retinoic acid_025.0mkd_#1326

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Retinoic acid_025.0mkd_#1326


title: PPAR in Rat  Soleus_d06_Retinoic acid_025.0mkd_#1325

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Retinoic acid_025.0mkd_#1325


title: PPAR in Rat  Soleus_d06_Rosiglitazone_100.0mkd_#1381

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Rosiglitazone_100.0mkd_#1381


title: PPAR in Rat  Soleus_d06_Wy-14;643_100.0mkd_#1213

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Wy-14;643_100.0mkd_#1213


title: PPAR in Rat  Quad_d03_ vehicle control_000.0mkd_#1022

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_ vehicle control_000.0mkd_#1022


title: PPAR in Rat  Soleus_d06_Rosiglitazone_100.0mkd_#1384

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Rosiglitazone_100.0mkd_#1384


title: PPAR in Rat  Quad_d04_Rosiglitazone_100.0mkd_#1376

description: Quad_d04_ vehicle control pool_000.0mkd_n=15 vs. Quad_d04_Rosiglitazone_100.0mkd_#1376


title: PPAR in Rat  Soleus_d06_Bezafibrate_250.0mkd_#1270

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Bezafibrate_250.0mkd_#1270


title: PPAR in Rat  Soleus_d06_Fenofibrate_400.0mkd_#1160

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Fenofibrate_400.0mkd_#1160


title: PPAR in Rat  Soleus_d06_Fenofibrate_400.0mkd_#1157

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Fenofibrate_400.0mkd_#1157


title: PPAR in Rat  Soleus_d06_ vehicle control_000.0mkd_#1068

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_ vehicle control_000.0mkd_#1068


title: PPAR in Rat  Soleus_d06_ vehicle control_000.0mkd_#1070

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_ vehicle control_000.0mkd_#1070


title: PPAR in Rat  Soleus_d06_ vehicle control_000.0mkd_#1074

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_ vehicle control_000.0mkd_#1074


title: PPAR in Rat  Soleus_d06_Bezafibrate_250.0mkd_#1269

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Bezafibrate_250.0mkd_#1269


title: PPAR in Rat  Soleus_d06_Wy-14;643_100.0mkd_#1214

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Wy-14;643_100.0mkd_#1214


title: PPAR in Rat  Soleus_d06_Fenofibrate_400.0mkd_#1159

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Fenofibrate_400.0mkd_#1159


title: PPAR in Rat  Soleus_d06_ vehicle control_000.0mkd_#1072

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_ vehicle control_000.0mkd_#1072


title: PPAR in Rat  Soleus_d05_Rosiglitazone_100.0mkd_#1380

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Rosiglitazone_100.0mkd_#1380


title: PPAR in Rat  Soleus_d06_Bezafibrate_250.0mkd_#1272

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Bezafibrate_250.0mkd_#1272


title: PPAR in Rat  Soleus_d05_Wy-14;643_100.0mkd_#1209

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Wy-14;643_100.0mkd_#1209


title: PPAR in Rat  Soleus_d05_Wy-14;643_100.0mkd_#1211

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Wy-14;643_100.0mkd_#1211


title: PPAR in Rat  Soleus_d06_Bezafibrate_250.0mkd_#1271

description: Soleus_d06_ vehicle control pool_000.0mkd_(n=10) vs. Soleus_d06_Bezafibrate_250.0mkd_#1271


title: PPAR in Rat  Soleus_d05_Wy-14;643_100.0mkd_#1212

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Wy-14;643_100.0mkd_#1212


title: PPAR in Rat  Soleus_d05_Wy-14;643_100.0mkd_#1210

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Wy-14;643_100.0mkd_#1210


title: PPAR in Rat  Soleus_d05_Rosiglitazone_100.0mkd_#1378

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Rosiglitazone_100.0mkd_#1378


title: PPAR in Rat  Soleus_d05_Fenofibrate_400.0mkd_#1156

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Fenofibrate_400.0mkd_#1156


title: PPAR in Rat  Soleus_d05_Fenofibrate_400.0mkd_#1155

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Fenofibrate_400.0mkd_#1155


title: PPAR in Rat  Soleus_d05_Retinoic acid_025.0mkd_#1321

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Retinoic acid_025.0mkd_#1321


title: PPAR in Rat  Soleus_d05_Retinoic acid_025.0mkd_#1322

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Retinoic acid_025.0mkd_#1322


title: PPAR in Rat  Soleus_d05_Rosiglitazone_100.0mkd_#1377

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Rosiglitazone_100.0mkd_#1377


title: PPAR in Rat  Soleus_d05_Retinoic acid_025.0mkd_#1323

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Retinoic acid_025.0mkd_#1323


title: PPAR in Rat  Soleus_d05_Retinoic acid_025.0mkd_#1324

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Retinoic acid_025.0mkd_#1324


title: PPAR in Rat  Soleus_d05_Rosiglitazone_100.0mkd_#1379

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Rosiglitazone_100.0mkd_#1379


title: PPAR in Rat  Soleus_d05_ vehicle control_000.0mkd_#1057

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_ vehicle control_000.0mkd_#1057


title: PPAR in Rat  Soleus_d05_ vehicle control_000.0mkd_#1056

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_ vehicle control_000.0mkd_#1056


title: PPAR in Rat  Soleus_d05_Fenofibrate_400.0mkd_#1153

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Fenofibrate_400.0mkd_#1153


title: PPAR in Rat  Soleus_d05_Bezafibrate_250.0mkd_#1265

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Bezafibrate_250.0mkd_#1265


title: PPAR in Rat  Soleus_d05_ vehicle control_000.0mkd_#1064

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_ vehicle control_000.0mkd_#1064


title: PPAR in Rat  Soleus_d04_Wy-14;643_100.0mkd_#1208

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Wy-14;643_100.0mkd_#1208


title: PPAR in Rat  Soleus_d05_Bezafibrate_250.0mkd_#1268

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Bezafibrate_250.0mkd_#1268


title: PPAR in Rat  Soleus_d05_ vehicle control_000.0mkd_#1061

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_ vehicle control_000.0mkd_#1061


title: PPAR in Rat  Soleus_d04_Wy-14;643_100.0mkd_#1205

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Wy-14;643_100.0mkd_#1205


title: PPAR in Rat  Soleus_d04_Retinoic acid_025.0mkd_#1318

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Retinoic acid_025.0mkd_#1318


title: PPAR in Rat  Soleus_d05_Fenofibrate_400.0mkd_#1154

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Fenofibrate_400.0mkd_#1154


title: PPAR in Rat  Soleus_d04_Retinoic acid_025.0mkd_#1319

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Retinoic acid_025.0mkd_#1319


title: PPAR in Rat  Soleus_d04_Wy-14;643_100.0mkd_#1206

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Wy-14;643_100.0mkd_#1206


title: PPAR in Rat  Soleus_d04_Retinoic acid_025.0mkd_#1320

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Retinoic acid_025.0mkd_#1320


title: PPAR in Rat  Soleus_d05_Bezafibrate_250.0mkd_#1267

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Bezafibrate_250.0mkd_#1267


title: PPAR in Rat  Soleus_d04_Rosiglitazone_100.0mkd_#1376

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Rosiglitazone_100.0mkd_#1376


title: PPAR in Rat  Soleus_d04_Rosiglitazone_100.0mkd_#1373

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Rosiglitazone_100.0mkd_#1373


title: PPAR in Rat  Soleus_d05_Bezafibrate_250.0mkd_#1266

description: Soleus_d05_ vehicle control pool_000.0mkd_(n=11) vs. Soleus_d05_Bezafibrate_250.0mkd_#1266


title: PPAR in Rat  Soleus_d04_Rosiglitazone_100.0mkd_#1375

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Rosiglitazone_100.0mkd_#1375


title: PPAR in Rat  Soleus_d04_Fenofibrate_400.0mkd_#1152

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Fenofibrate_400.0mkd_#1152


title: PPAR in Rat  Soleus_d04_Fenofibrate_400.0mkd_#1151

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Fenofibrate_400.0mkd_#1151


title: PPAR in Rat  Soleus_d04_Bezafibrate_250.0mkd_#1264

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Bezafibrate_250.0mkd_#1264


title: PPAR in Rat  Soleus_d04_Bezafibrate_250.0mkd_#1263

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Bezafibrate_250.0mkd_#1263


title: PPAR in Rat  Soleus_d04_Retinoic acid_025.0mkd_#1317

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Retinoic acid_025.0mkd_#1317


title: PPAR in Rat  Soleus_d04_Rosiglitazone_100.0mkd_#1374

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Rosiglitazone_100.0mkd_#1374


title: PPAR in Rat  Soleus_d04_Fenofibrate_400.0mkd_#1149

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Fenofibrate_400.0mkd_#1149


title: PPAR in Rat  Soleus_d04_Fenofibrate_400.0mkd_#1150

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Fenofibrate_400.0mkd_#1150


title: PPAR in Rat  Quad_d03_Bezafibrate_250.0mkd_#1257

description: Quad_d03_ vehicle control pool_000.0mkd_n=12 vs. Quad_d03_Bezafibrate_250.0mkd_#1257


title: PPAR in Rat  Soleus_d04_Bezafibrate_250.0mkd_#1262

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Bezafibrate_250.0mkd_#1262


title: PPAR in Rat  Soleus_d04_ vehicle control_000.0mkd_#1044

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_ vehicle control_000.0mkd_#1044


title: PPAR in Rat  Soleus_d03_Wy-14;643_100.0mkd_#1201

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Wy-14;643_100.0mkd_#1201


title: PPAR in Rat  Soleus_d04_ vehicle control_000.0mkd_#1045

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_ vehicle control_000.0mkd_#1045


title: PPAR in Rat  Soleus_d03_Rosiglitazone_100.0mkd_#1372

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Rosiglitazone_100.0mkd_#1372


title: PPAR in Rat  Soleus_d04_ vehicle control_000.0mkd_#1034

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_ vehicle control_000.0mkd_#1034


title: PPAR in Rat  Soleus_d03_Rosiglitazone_100.0mkd_#1370

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Rosiglitazone_100.0mkd_#1370


title: PPAR in Rat  Soleus_d03_Wy-14;643_100.0mkd_#1202

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Wy-14;643_100.0mkd_#1202


title: PPAR in Rat  Soleus_d04_ vehicle control_000.0mkd_#1043

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_ vehicle control_000.0mkd_#1043


title: PPAR in Rat  Soleus_d04_ vehicle control_000.0mkd_#1038

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_ vehicle control_000.0mkd_#1038


title: PPAR in Rat  Soleus_d03_Wy-14;643_100.0mkd_#1204

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Wy-14;643_100.0mkd_#1204


title: PPAR in Rat  Soleus_d04_ vehicle control_000.0mkd_#1047

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_ vehicle control_000.0mkd_#1047


title: PPAR in Rat  Soleus_d03_Wy-14;643_100.0mkd_#1203

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Wy-14;643_100.0mkd_#1203


title: PPAR in Rat  Soleus_d04_ vehicle control_000.0mkd_#1039

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_ vehicle control_000.0mkd_#1039


title: PPAR in Rat  Soleus_d03_Rosiglitazone_100.0mkd_#1369

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Rosiglitazone_100.0mkd_#1369


title: PPAR in Rat  Soleus_d04_ vehicle control_000.0mkd_#1042

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_ vehicle control_000.0mkd_#1042


title: PPAR in Rat  Soleus_d03_Fenofibrate_400.0mkd_#1148

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Fenofibrate_400.0mkd_#1148


title: PPAR in Rat  Soleus_d04_ vehicle control_000.0mkd_#1037

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_ vehicle control_000.0mkd_#1037


title: PPAR in Rat  Soleus_d03_Retinoic acid_025.0mkd_#1314

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Retinoic acid_025.0mkd_#1314


title: PPAR in Rat  Soleus_d03_Retinoic acid_025.0mkd_#1316

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Retinoic acid_025.0mkd_#1316


title: PPAR in Rat  Soleus_d03_Retinoic acid_025.0mkd_#1313

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Retinoic acid_025.0mkd_#1313


title: PPAR in Rat  Soleus_d03_Fenofibrate_400.0mkd_#1147

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Fenofibrate_400.0mkd_#1147


title: PPAR in Rat  Soleus_d03_Fenofibrate_400.0mkd_#1146

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Fenofibrate_400.0mkd_#1146


title: PPAR in Rat  Soleus_d03_Rosiglitazone_100.0mkd_#1371

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Rosiglitazone_100.0mkd_#1371


title: PPAR in Rat  Soleus_d03_Retinoic acid_025.0mkd_#1315

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Retinoic acid_025.0mkd_#1315


title: PPAR in Rat  Soleus_d04_Bezafibrate_250.0mkd_#1261

description: Soleus_d04_ vehicle control pool_000.0mkd_(n=14) vs. Soleus_d04_Bezafibrate_250.0mkd_#1261


title: PPAR in Rat  Soleus_d03_Bezafibrate_250.0mkd_#1260

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Bezafibrate_250.0mkd_#1260


title: PPAR in Rat  Soleus_d03_Bezafibrate_250.0mkd_#1258

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Bezafibrate_250.0mkd_#1258


title: PPAR in Rat  Soleus_d03_Fenofibrate_400.0mkd_#1145

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Fenofibrate_400.0mkd_#1145


title: PPAR in Rat  Soleus_d03_ vehicle control_000.0mkd_#1030

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_ vehicle control_000.0mkd_#1030


title: PPAR in Rat  Soleus_d03_ vehicle control_000.0mkd_#1028

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_ vehicle control_000.0mkd_#1028


title: PPAR in Rat  Soleus_d03_ vehicle control_000.0mkd_#1021

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_ vehicle control_000.0mkd_#1021


title: PPAR in Rat  Soleus_d03_ vehicle control_000.0mkd_#1022

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_ vehicle control_000.0mkd_#1022


title: PPAR in Rat  Soleus_d02_Wy-14;643_100.0mkd_#1199

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Wy-14;643_100.0mkd_#1199


title: PPAR in Rat  Soleus_d03_ vehicle control_000.0mkd_#1017

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_ vehicle control_000.0mkd_#1017


title: PPAR in Rat  Soleus_d03_ vehicle control_000.0mkd_#1024

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_ vehicle control_000.0mkd_#1024


title: PPAR in Rat  Soleus_d03_Bezafibrate_250.0mkd_#1257

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Bezafibrate_250.0mkd_#1257


title: PPAR in Rat  Soleus_d03_ vehicle control_000.0mkd_#1019

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_ vehicle control_000.0mkd_#1019


title: PPAR in Rat  Soleus_d02_Rosiglitazone_100.0mkd_#1367

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Rosiglitazone_100.0mkd_#1367


title: PPAR in Rat  Soleus_d02_Retinoic acid_025.0mkd_#1311

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Retinoic acid_025.0mkd_#1311


title: PPAR in Rat  Soleus_d03_Bezafibrate_250.0mkd_#1259

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_Bezafibrate_250.0mkd_#1259


title: PPAR in Rat  Soleus_d03_ vehicle control_000.0mkd_#1032

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_ vehicle control_000.0mkd_#1032


title: Replicate3_Voxel G8

description: Biological replicate 3 of 3. Voxel labeled with Cy3, Control Whole Brain Labeled with Cy5.

hyb_protocol: Dried-down targets were then resuspended in 50ul of MWG Hyb Buffer (Ocimum Biosolutions, cat#1180-200000) and 1 ug of Poly A RNA (Sigma, P9403) was added to each target. The targets were heat denatured and then hybridized 16 hours at 42C on a Maui Hyb Station (BioMicro Systems, Inc., 4 chamber model).  Immediately prior to hybridization, the microarrays were first vigorously dunked in a 0.2% SDS solution at room temp followed by  prehybridization in a solution of 5x SSC, 1% SDS, and 1% BSA at 55o C for 60 minutes.  Following prehybridization, the arrays were vigorously washed in 9 exchanges of ddH2O to remove all traces of the prehybridization solution, rinsed in isopropanol, and dried at room temperature.  The target samples were denatured at 95oC for three minutes and placed on the prehybridized arrays, covered with specialized hybridization chambers from BioMicro Inc (Salt Lake City, UT).  Arrays were hybridized using the MAUI hybridization system (BioMicro) for 16 hours at 42o C using the manufacturer's mixing protocol.  After hybridization, the arrays were washed in 2X SSC/0.1% SDS at 55o C with agitation for 5 minutes then washed with two successive 5 minute washes with 1x SSC and 0.1xSSC at RT.  The washed arrays were dried by centrifugation at 50xg for 5 minutes and immediately scanned using a GenePix 4000B microarray scanner [Axon Instruments, Union City, CA].

scan_protocol: Microarrays were scanned using a GenePix 4000B microarray scanner and GenePix Pro version 6 [Axon Instruments, Union City, CA].

data_processing: LOWESS normalized, background subtracted VALUE data obtained from log2 of processed Red signal/processed Green signal. GeneSpring (Agilent) software was used.

source_name: Total RNA from whole mouse brain P56, labeled with Cyanine-5 (red).

label_protocol: Briefly, 5-10 mg of total RNA from each sample were reverse transcribed using Superscript II reverse transcriptase (Invitrogen, Carlsbad, CA).  Generated cDNA targets were purified using the QIAquick PCR purification kit (Qiagen, Valencia, CA). The purified cDNA targets were dried to completion and then differentially coupled to ester-linked Cy3 (controls) or Cy5 (LiCl-treated) dye (Amersham, Piscataway, NJ). After quenching of unbound dye with 4M Hydroxylamine, Cy3- and Cy5-labeled cDNA target pairs were combined and cleaned up over QIAquick columns (Qiagen, Valencia, CA).

growth_protocol: Mice were housed in a vivarium with littermates according to DLAM housing protocols.  Rooms were maintained with a 12 hour day/night light schedule and cage bedding was changed weekly.  Mice were anesthetized using isoflourane and the brain was immediately removed.

extract_protocol: Total RNA extracted using Trizol following manufacturer's instructions

value: Whole Brain

source_name: Total RNA from pooled mouse brain voxels P56, labeled with Cyanine-3 (green).

value: Brain Voxel


title: PPAR in Rat  Soleus_d03_ vehicle control_000.0mkd_#1025

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_ vehicle control_000.0mkd_#1025


title: PPAR in Rat  Soleus_d02_Rosiglitazone_100.0mkd_#1368

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Rosiglitazone_100.0mkd_#1368


title: PPAR in Rat  Soleus_d03_ vehicle control_000.0mkd_#1020

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_ vehicle control_000.0mkd_#1020


title: PPAR in Rat  Soleus_d02_Rosiglitazone_100.0mkd_#1366

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Rosiglitazone_100.0mkd_#1366


title: PPAR in Rat  Soleus_d02_Retinoic acid_025.0mkd_#1310

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Retinoic acid_025.0mkd_#1310


title: Replicate3_Voxel G9

value: Male


title: PPAR in Rat  Soleus_d02_Wy-14;643_100.0mkd_#1198

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Wy-14;643_100.0mkd_#1198


title: PPAR in Rat  Soleus_d02_Rosiglitazone_100.0mkd_#1365

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Rosiglitazone_100.0mkd_#1365


title: PPAR in Rat  Soleus_d02_Retinoic acid_025.0mkd_#1312

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Retinoic acid_025.0mkd_#1312


title: PPAR in Rat  Soleus_d02_Wy-14;643_100.0mkd_#1197

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Wy-14;643_100.0mkd_#1197


title: PPAR in Rat  Soleus_d02_Retinoic acid_025.0mkd_#1309

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Retinoic acid_025.0mkd_#1309


title: PPAR in Rat  Soleus_d03_ vehicle control_000.0mkd_#1027

description: Soleus_d03_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d03_ vehicle control_000.0mkd_#1027


title: Replicate3_Voxel G3


title: Replicate3_Voxel G4


title: Replicate3_Voxel F7


title: PPAR in Rat  Soleus_d02_Fenofibrate_400.0mkd_#1143

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Fenofibrate_400.0mkd_#1143


title: Replicate3_Voxel F9


title: Replicate3_Voxel F5


title: PPAR in Rat  Soleus_d02_Fenofibrate_400.0mkd_#1144

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Fenofibrate_400.0mkd_#1144


title: PPAR in Rat  Soleus_d02_Bezafibrate_250.0mkd_#1255

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Bezafibrate_250.0mkd_#1255


title: PPAR in Rat  Soleus_d02_Fenofibrate_400.0mkd_#1141

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Fenofibrate_400.0mkd_#1141


title: PPAR in Rat  Soleus_d02_Fenofibrate_400.0mkd_#1142

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Fenofibrate_400.0mkd_#1142


title: Replicate3_Voxel E9

description: Biological replicate 3 of 3. Voxel labeled with Cy3, Control Whole Brain Labeled with Cy5.


title: Replicate3_Voxel G7


title: PPAR in Rat  Soleus_d02_Bezafibrate_250.0mkd_#1254

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Bezafibrate_250.0mkd_#1254


title: Replicate3_Voxel G6


title: Replicate3_Voxel F8


title: PPAR in Rat  Soleus_d02_Bezafibrate_250.0mkd_#1253

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Bezafibrate_250.0mkd_#1253


title: Replicate3_Voxel F3


title: PPAR in Rat  Soleus_d02_ vehicle control_000.0mkd_#1002

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_ vehicle control_000.0mkd_#1002


title: PPAR in Rat  Soleus_d02_ vehicle control_000.0mkd_#1004

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_ vehicle control_000.0mkd_#1004


title: PPAR in Rat  Soleus_d02_ vehicle control_000.0mkd_#1013

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_ vehicle control_000.0mkd_#1013


title: Replicate3_Voxel F6


title: PPAR in Rat  Soleus_d02_ vehicle control_000.0mkd_#1014

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_ vehicle control_000.0mkd_#1014


title: PPAR in Rat  Soleus_d02_Bezafibrate_250.0mkd_#1256

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_Bezafibrate_250.0mkd_#1256


title: Replicate3_Voxel F4


title: Replicate3_Voxel F2


title: Replicate3_Voxel E8


title: PPAR in Rat  Soleus_d02_ vehicle control_000.0mkd_#1005

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_ vehicle control_000.0mkd_#1005


title: Replicate3_Voxel E5


title: Replicate3_Voxel E4


title: PPAR in Rat  Liver_d06_Fenofibrate_400.0mkd_#1159

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_Fenofibrate_400.0mkd_#1159

source_name: Liver

tag: Sprague Dawley CD, Approximately 8 wks at the onset of dosing, Vehicle Treated, Liver

tag: Sprague Dawley CD, Approximately 8 wks at the onset of dosing, Fenofibrate; Wy-14,643; bezafibrate; rosiglitazone; all trans retinoic acid, Liver


title: PPAR in Rat  Liver_d06_Rosiglitazone_100.0mkd_#1384

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_Rosiglitazone_100.0mkd_#1384


title: Replicate3_Voxel E11

tag: Strain

tag: Gender


title: Replicate3_Voxel E6

tag: Tissue

tag: Age


title: PPAR in Rat  Liver_d06_Retinoic acid_025.0mkd_#1326

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_Retinoic acid_025.0mkd_#1326


title: PPAR in Rat  Liver_d06_Retinoic acid_025.0mkd_#1327

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_Retinoic acid_025.0mkd_#1327


title: PPAR in Rat  Liver_d06_Fenofibrate_400.0mkd_#1160

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_Fenofibrate_400.0mkd_#1160


title: Replicate3_Voxel E7


title: Replicate3_Voxel E3


title: PPAR in Rat  Soleus_d02_ vehicle control_000.0mkd_#1015

description: Soleus_d02_ vehicle control pool_000.0mkd_(n=12) vs. Soleus_d02_ vehicle control_000.0mkd_#1015


title: Replicate3_Voxel E1


title: Replicate3_Voxel E10


title: PPAR in Rat  Liver_d06_Rosiglitazone_100.0mkd_#1383

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_Rosiglitazone_100.0mkd_#1383


title: PPAR in Rat  Liver_d06_Fenofibrate_400.0mkd_#1157

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_Fenofibrate_400.0mkd_#1157


title: PPAR in Rat  Liver_d06_Bezafibrate_250.0mkd_#1271

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_Bezafibrate_250.0mkd_#1271


title: Replicate3_Voxel D8

description: Biological replicate 3 of 3. Voxel labeled with Cy3, Control Whole Brain Labeled with Cy5.


title: PPAR in Rat  Liver_d06_Bezafibrate_250.0mkd_#1270

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_Bezafibrate_250.0mkd_#1270


title: PPAR in Rat  Liver_d06_Retinoic acid_025.0mkd_#1325

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_Retinoic acid_025.0mkd_#1325


title: PPAR in Rat  Liver_d06_Bezafibrate_250.0mkd_#1269

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_Bezafibrate_250.0mkd_#1269


title: Replicate3_Voxel E2


title: Replicate3_Voxel D7


title: PPAR in Rat  Liver_d06_ Wy-14;643_100.0mkd_#1216

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ Wy-14;643_100.0mkd_#1216


title: Replicate3_Voxel D6


title: Replicate3_Voxel D9


title: Replicate3_Voxel D10


title: PPAR in Rat  Liver_d06_ Wy-14;643_100.0mkd_#1215

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ Wy-14;643_100.0mkd_#1215


title: Replicate3_Voxel D4


title: PPAR in Rat  Liver_d06_Rosiglitazone_100.0mkd_#1382

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_Rosiglitazone_100.0mkd_#1382


title: Replicate3_Voxel D3


title: Replicate3_Voxel C8


title: Replicate3_Voxel D2


title: Replicate3_Voxel D1


title: PPAR in Rat  Liver_d06_ Wy-14;643_100.0mkd_#1213

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ Wy-14;643_100.0mkd_#1213


title: Replicate3_Voxel C7


title: PPAR in Rat  Liver_d06_ vehicle control_000.0mkd_#1080

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ vehicle control_000.0mkd_#1080


title: Replicate3_Voxel C6


title: PPAR in Rat  Liver_d06_ vehicle control_000.0mkd_#1077

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ vehicle control_000.0mkd_#1077


title: PPAR in Rat  Liver_d06_ vehicle control_000.0mkd_#1078

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ vehicle control_000.0mkd_#1078


title: PPAR in Rat  Liver_d06_ vehicle control_000.0mkd_#1079

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ vehicle control_000.0mkd_#1079


title: PPAR in Rat  Liver_d06_ vehicle control_000.0mkd_#1074

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ vehicle control_000.0mkd_#1074


title: PPAR in Rat  Liver_d06_ vehicle control_000.0mkd_#1071

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ vehicle control_000.0mkd_#1071


title: Replicate3_Voxel C4


title: Replicate3_Voxel C5


title: Replicate3_Voxel D11


title: Replicate3_Voxel C9


title: PPAR in Rat  Liver_d06_ vehicle control_000.0mkd_#1072

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ vehicle control_000.0mkd_#1072


title: PPAR in Rat  Liver_d06_ vehicle control_000.0mkd_#1075

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ vehicle control_000.0mkd_#1075


title: PPAR in Rat  Liver_d06_ vehicle control_000.0mkd_#1073

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ vehicle control_000.0mkd_#1073


title: PPAR in Rat  Liver_d06_ vehicle control_000.0mkd_#1070

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ vehicle control_000.0mkd_#1070


title: Replicate3_Voxel D5

description: Biological replicate 3 of 3. Voxel labeled with Cy3, Control Whole Brain Labeled with Cy5.


title: PPAR in Rat  Liver_d06_ vehicle control_000.0mkd_#1076

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ vehicle control_000.0mkd_#1076


title: PPAR in Rat  Liver_d06_ vehicle control_000.0mkd_#1069

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ vehicle control_000.0mkd_#1069


title: Replicate3_Voxel C2


title: Replicate3_Voxel C11


title: Replicate3_Voxel C10


title: Replicate3_Voxel B7


title: PPAR in Rat  Liver_d06_ vehicle control_000.0mkd_#1068

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ vehicle control_000.0mkd_#1068


title: PPAR in Rat  Liver_d06_ vehicle control_000.0mkd_#1065

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ vehicle control_000.0mkd_#1065


title: Replicate3_Voxel B6


title: Replicate3_Voxel C3


title: Replicate3_Voxel B2


title: PPAR in Rat  Liver_d05_Rosiglitazone_100.0mkd_#1379

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_Rosiglitazone_100.0mkd_#1379


title: PPAR in Rat  Liver_d05_Rosiglitazone_100.0mkd_#1377

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_Rosiglitazone_100.0mkd_#1377


title: PPAR in Rat  Liver_d06_ vehicle control_000.0mkd_#1067

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ vehicle control_000.0mkd_#1067


title: PPAR in Rat  Liver_d06_ vehicle control_000.0mkd_#1066

description: Liver_d06_ vehicle control pool_000.0mkd_n=16 vs. Liver_d06_ vehicle control_000.0mkd_#1066


title: PPAR in Rat  Liver_d05_Rosiglitazone_100.0mkd_#1380

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_Rosiglitazone_100.0mkd_#1380


title: PPAR in Rat  Liver_d05_Retinoic acid_025.0mkd_#1324

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_Retinoic acid_025.0mkd_#1324


title: PPAR in Rat  Liver_d05_Retinoic acid_025.0mkd_#1323

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_Retinoic acid_025.0mkd_#1323


title: Replicate3_Voxel B9


title: PPAR in Rat  Liver_d05_Retinoic acid_025.0mkd_#1322

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_Retinoic acid_025.0mkd_#1322


title: Replicate3_Voxel B5


title: Replicate3_Voxel B8


title: Replicate3_Voxel C1


title: Replicate3_Voxel B3


title: Replicate3_Voxel B4


title: Replicate3_Voxel B11


title: Replicate3_Voxel A6


title: Replicate3_Voxel A4


title: Replicate3_Voxel A7


title: Replicate3_Voxel B10


title: PPAR in Rat  Liver_d05_Fenofibrate_400.0mkd_#1155

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_Fenofibrate_400.0mkd_#1155


title: Replicate3_Voxel A5


title: Replicate3_Voxel A8


title: PPAR in Rat  Liver_d05_Fenofibrate_400.0mkd_#1154

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_Fenofibrate_400.0mkd_#1154


title: Replicate3_Voxel A10


title: Replicate3_Voxel A3


title: PPAR in Rat  Liver_d05_ Wy-14;643_100.0mkd_#1210

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_ Wy-14;643_100.0mkd_#1210


title: PPAR in Rat  Liver_d05_ vehicle control_000.0mkd_#1062

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_ vehicle control_000.0mkd_#1062


title: PPAR in Rat  Liver_d05_ Wy-14;643_100.0mkd_#1211

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_ Wy-14;643_100.0mkd_#1211


title: PPAR in Rat  Liver_d05_Fenofibrate_400.0mkd_#1156

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_Fenofibrate_400.0mkd_#1156


title: PPAR in Rat  Liver_d05_ vehicle control_000.0mkd_#1064

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_ vehicle control_000.0mkd_#1064


title: PPAR in Rat  Liver_d05_ Wy-14;643_100.0mkd_#1209

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_ Wy-14;643_100.0mkd_#1209


title: Replicate2_Voxel G8

description: Biological replicate 2 of 3. (Dye Swap) Voxel labeled with Cy5, Control Whole Brain Labeled with Cy3.

source_name: Total RNA from pooled mouse brain voxels P56, labeled with Cyanine-5 (red).

source_name: Total RNA from whole mouse brain P56, labeled with Cyanine-3 (green).


title: Replicate3_Voxel A9

description: Biological replicate 3 of 3. Voxel labeled with Cy3, Control Whole Brain Labeled with Cy5.


title: PPAR in Rat  Liver_d05_ vehicle control_000.0mkd_#1060

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_ vehicle control_000.0mkd_#1060


title: Replicate2_Voxel G7


title: PPAR in Rat  Liver_d05_Bezafibrate_250.0mkd_#1268

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_Bezafibrate_250.0mkd_#1268


title: PPAR in Rat  Liver_d05_ vehicle control_000.0mkd_#1061

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_ vehicle control_000.0mkd_#1061


title: Replicate2_Voxel G6


title: PPAR in Rat  Liver_d05_Bezafibrate_250.0mkd_#1265

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_Bezafibrate_250.0mkd_#1265


title: PPAR in Rat  Liver_d05_ vehicle control_000.0mkd_#1059

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_ vehicle control_000.0mkd_#1059


title: PPAR in Rat  Liver_d05_ vehicle control_000.0mkd_#1058

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_ vehicle control_000.0mkd_#1058


title: Replicate2_Voxel G9


title: PPAR in Rat  Liver_d05_ vehicle control_000.0mkd_#1056

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_ vehicle control_000.0mkd_#1056


title: Replicate2_Voxel G5


title: PPAR in Rat  Liver_d05_ vehicle control_000.0mkd_#1050

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_ vehicle control_000.0mkd_#1050


title: Replicate2_Voxel G4


title: Replicate2_Voxel G2


title: PPAR in Rat  Liver_d05_ vehicle control_000.0mkd_#1057

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_ vehicle control_000.0mkd_#1057


title: Replicate2_Voxel F8


title: Replicate2_Voxel F5


title: PPAR in Rat  Liver_d05_ vehicle control_000.0mkd_#1055

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_ vehicle control_000.0mkd_#1055


title: PPAR in Rat  Liver_d05_ vehicle control_000.0mkd_#1053

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_ vehicle control_000.0mkd_#1053


title: Replicate2_Voxel G3


title: Replicate2_Voxel F7


title: PPAR in Rat  Liver_d05_ vehicle control_000.0mkd_#1054

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_ vehicle control_000.0mkd_#1054


title: PPAR in Rat  Liver_d05_ vehicle control_000.0mkd_#1052

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_ vehicle control_000.0mkd_#1052


title: Replicate2_Voxel F2


title: Replicate2_Voxel F3


title: PPAR in Rat  Liver_d04_Rosiglitazone_100.0mkd_#1374

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_Rosiglitazone_100.0mkd_#1374


title: Replicate2_Voxel F9


title: Replicate2_Voxel F4


title: Replicate2_Voxel F10


title: PPAR in Rat  Liver_d04_Retinoic acid_025.0mkd_#1320

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_Retinoic acid_025.0mkd_#1320


title: PPAR in Rat  Liver_d05_ vehicle control_000.0mkd_#1051

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_ vehicle control_000.0mkd_#1051


title: PPAR in Rat  Liver_d04_Rosiglitazone_100.0mkd_#1376

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_Rosiglitazone_100.0mkd_#1376


title: Replicate2_Voxel F6

description: Biological replicate 2 of 3. (Dye Swap) Voxel labeled with Cy5, Control Whole Brain Labeled with Cy3.


title: PPAR in Rat  Liver_d04_Retinoic acid_025.0mkd_#1318

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_Retinoic acid_025.0mkd_#1318


title: PPAR in Rat  Liver_d04_Retinoic acid_025.0mkd_#1317

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_Retinoic acid_025.0mkd_#1317


title: PPAR in Rat  Liver_d04_Rosiglitazone_100.0mkd_#1373

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_Rosiglitazone_100.0mkd_#1373


title: Replicate2_Voxel E9


title: Replicate2_Voxel E6


title: PPAR in Rat  Liver_d04_Fenofibrate_400.0mkd_#1151

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_Fenofibrate_400.0mkd_#1151


title: Replicate2_Voxel E8


title: Replicate2_Voxel E7


title: Replicate2_Voxel E5


title: PPAR in Rat  Liver_d04_Bezafibrate_250.0mkd_#1263

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_Bezafibrate_250.0mkd_#1263


title: PPAR in Rat  Liver_d04_ Wy-14;643_100.0mkd_#1206

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_ Wy-14;643_100.0mkd_#1206


title: PPAR in Rat  Liver_d04_Fenofibrate_400.0mkd_#1150

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_Fenofibrate_400.0mkd_#1150


title: PPAR in Rat  Liver_d04_Bezafibrate_250.0mkd_#1262

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_Bezafibrate_250.0mkd_#1262


title: Replicate2_Voxel E3


title: PPAR in Rat  Liver_d04_ Wy-14;643_100.0mkd_#1208

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_ Wy-14;643_100.0mkd_#1208


title: Replicate2_Voxel E2


title: PPAR in Rat  Liver_d04_Bezafibrate_250.0mkd_#1261

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_Bezafibrate_250.0mkd_#1261


title: Replicate2_Voxel E11


title: Replicate2_Voxel E4


title: Replicate2_Voxel E10


title: Replicate2_Voxel E1


title: PPAR in Rat  Liver_d04_Fenofibrate_400.0mkd_#1149

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_Fenofibrate_400.0mkd_#1149


title: Replicate2_Voxel D9


title: Replicate2_Voxel D8


title: Replicate2_Voxel D7


title: PPAR in Rat  Liver_d04_ vehicle control_000.0mkd_#1047

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_ vehicle control_000.0mkd_#1047


title: PPAR in Rat  Liver_d04_ vehicle control_000.0mkd_#1046

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_ vehicle control_000.0mkd_#1046


title: Replicate2_Voxel D6


title: PPAR in Rat  Liver_d04_ Wy-14;643_100.0mkd_#1205

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_ Wy-14;643_100.0mkd_#1205


title: PPAR in Rat  Liver_d04_ vehicle control_000.0mkd_#1045

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_ vehicle control_000.0mkd_#1045


title: PPAR in Rat  Liver_d04_ vehicle control_000.0mkd_#1043

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_ vehicle control_000.0mkd_#1043


title: PPAR in Rat  Liver_d04_ vehicle control_000.0mkd_#1042

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_ vehicle control_000.0mkd_#1042


title: PPAR in Rat  Liver_d04_ vehicle control_000.0mkd_#1048

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_ vehicle control_000.0mkd_#1048


title: PPAR in Rat  Liver_d04_ vehicle control_000.0mkd_#1041

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_ vehicle control_000.0mkd_#1041


title: Replicate2_Voxel D4

description: Biological replicate 2 of 3. (Dye Swap) Voxel labeled with Cy5, Control Whole Brain Labeled with Cy3.


title: Replicate2_Voxel D2


title: Replicate2_Voxel D11


title: PPAR in Rat  Liver_d04_ vehicle control_000.0mkd_#1039

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_ vehicle control_000.0mkd_#1039


title: PPAR in Rat  Liver_d04_ vehicle control_000.0mkd_#1038

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_ vehicle control_000.0mkd_#1038


title: Replicate2_Voxel D3


title: PPAR in Rat  Liver_d05_Bezafibrate_250.0mkd_#1266

description: Liver_d05_ vehicle control pool_000.0mkd_n=14 vs. Liver_d05_Bezafibrate_250.0mkd_#1266


title: PPAR in Rat  Liver_d04_ vehicle control_000.0mkd_#1040

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_ vehicle control_000.0mkd_#1040


title: Replicate2_Voxel D10


title: Replicate2_Voxel D5


title: PPAR in Rat  Liver_d04_ vehicle control_000.0mkd_#1037

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_ vehicle control_000.0mkd_#1037


title: Replicate2_Voxel C7


title: PPAR in Rat  Liver_d04_ vehicle control_000.0mkd_#1035

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_ vehicle control_000.0mkd_#1035


title: Replicate2_Voxel C5


title: Replicate2_Voxel C8


title: Replicate2_Voxel C9


title: Replicate2_Voxel D1


title: PPAR in Rat  Liver_d04_ vehicle control_000.0mkd_#1033

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_ vehicle control_000.0mkd_#1033


title: PPAR in Rat  Liver_d04_ vehicle control_000.0mkd_#1034

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_ vehicle control_000.0mkd_#1034


title: PPAR in Rat  Liver_d03_Rosiglitazone_100.0mkd_#1370

description: Liver_d03_ vehicle control pool_000.0mkd_n=15 vs. Liver_d03_Rosiglitazone_100.0mkd_#1370


title: PPAR in Rat  Liver_d03_Rosiglitazone_100.0mkd_#1371

description: Liver_d03_ vehicle control pool_000.0mkd_n=15 vs. Liver_d03_Rosiglitazone_100.0mkd_#1371


title: PPAR in Rat  Liver_d03_Retinoic acid_025.0mkd_#1316

description: Liver_d03_ vehicle control pool_000.0mkd_n=15 vs. Liver_d03_Retinoic acid_025.0mkd_#1316


title: PPAR in Rat  Liver_d03_Rosiglitazone_100.0mkd_#1369

description: Liver_d03_ vehicle control pool_000.0mkd_n=15 vs. Liver_d03_Rosiglitazone_100.0mkd_#1369


title: PPAR in Rat  Liver_d04_ vehicle control_000.0mkd_#1036

description: Liver_d04_ vehicle control pool_000.0mkd_n=15 vs. Liver_d04_ vehicle control_000.0mkd_#1036


title: Replicate2_Voxel C3


title: Replicate2_Voxel C11


title: Replicate2_Voxel C2


title: PPAR in Rat  Liver_d03_Retinoic acid_025.0mkd_#1313

description: Liver_d03_ vehicle control pool_000.0mkd_n=15 vs. Liver_d03_Retinoic acid_025.0mkd_#1313


title: Replicate2_Voxel C4


title: PPAR in Rat  Liver_d03_Fenofibrate_400.0mkd_#1148

description: Liver_d03_ vehicle control pool_000.0mkd_n=15 vs. Liver_d03_Fenofibrate_400.0mkd_#1148


title: Replicate2_Voxel C1


title: Replicate2_Voxel B9


title: Replicate2_Voxel C6


title: Replicate2_Voxel B8


title: Replicate2_Voxel B7


title: Replicate2_Voxel C10


title: PPAR in Rat  Liver_d03_Retinoic acid_025.0mkd_#1314

description: Liver_d03_ vehicle control pool_000.0mkd_n=15 vs. Liver_d03_Retinoic acid_025.0mkd_#1314


title: PPAR in Rat  Liver_d03_Fenofibrate_400.0mkd_#1146

description: Liver_d03_ vehicle control pool_000.0mkd_n=15 vs. Liver_d03_Fenofibrate_400.0mkd_#1146


title: Replicate2_Voxel B5

description: Biological replicate 2 of 3. (Dye Swap) Voxel labeled with Cy5, Control Whole Brain Labeled with Cy3.


title: Replicate2_Voxel B4


title: Replicate2_Voxel B11


title: Replicate2_Voxel B2


title: PPAR in Rat  Liver_d03_Bezafibrate_250.0mkd_#1258

description: Liver_d03_ vehicle control pool_000.0mkd_n=15 vs. Liver_d03_Bezafibrate_250.0mkd_#1258


title: Replicate2_Voxel B10