title: 03PB813

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62315.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1840, 4960; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 26.33; Parameter Scan Time = 16:14:16; Parameter PMT Volts = 610; Parameter Scan Date = 2004-09-30; Parameter Pixel Size = 10; Parameter Laser on time = 62231; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 2.62; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 26.33; Parameter Scan Time = 16:14:16; Parameter PMT Volts = 680; Parameter Scan Date = 2004-09-30; Parameter Pixel Size = 10; Parameter Laser on time = 62190; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.20; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 03PB813; Sample source=PB; CBF group=t(8;21)


title: 02KM2755

status: Public on Aug 09 2007

type: RNA

city: Stanford

last: Stanford Microarray Database

state: CA

address: 300 Pasteur Drive

department: Stanford University, School of Medicine

country: USA

institute: Stanford Microarray Database (SMD)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62314.gif

hyb_protocol: not provided

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1840, 5120; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 25.66; Parameter Scan Time = 16:01:14; Parameter PMT Volts = 620; Parameter Scan Date = 2004-09-30; Parameter Pixel Size = 10; Parameter Laser on time = 62218; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 2.87; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 25.66; Parameter Scan Time = 16:01:14; Parameter PMT Volts = 680; Parameter Scan Date = 2004-09-30; Parameter Pixel Size = 10; Parameter Laser on time = 62177; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.18; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

data_processing: VALUE is Log (base 2) of the ratio of the median of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

molecule: total RNA

organism: Homo sapiens

source_name: aCR (Stratagene)

label_protocol: not provided

extract_protocol: not provided

tag: aCR (Stratagene)

source_name: 02KM2755; Sample source=BM; CBF group=t(8;21)


title: 03PB2246

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62316.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1800, 5320; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 26.88; Parameter Scan Time = 16:27:10; Parameter PMT Volts = 600; Parameter Scan Date = 2004-09-30; Parameter Pixel Size = 10; Parameter Laser on time = 62244; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 2.76; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 26.88; Parameter Scan Time = 16:27:10; Parameter PMT Volts = 700; Parameter Scan Date = 2004-09-30; Parameter Pixel Size = 10; Parameter Laser on time = 62202; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.21; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 03PB2246; Sample source=PB; CBF group=inv(16)


title: 00PB1811

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-02/59327.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1760, 5520; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.91; Parameter Scan Time = 11:15:04; Parameter PMT Volts = 570; Parameter Scan Date = 2005-01-05; Parameter Pixel Size = 10; Parameter Laser on time = 70754; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.73; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.91; Parameter Scan Time = 11:15:04; Parameter PMT Volts = 690; Parameter Scan Date = 2005-01-05; Parameter Pixel Size = 10; Parameter Laser on time = 70715; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.30; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 00PB1811; Sample source=PB; CBF group=inv(16)


title: 01PB2170

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62536.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1480, 4320; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 27.67; Parameter Scan Time = 11:34:56; Parameter PMT Volts = 580; Parameter Scan Date = 2004-11-23; Parameter Pixel Size = 10; Parameter Laser on time = 67598; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.71; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 27.67; Parameter Scan Time = 11:34:56; Parameter PMT Volts = 700; Parameter Scan Date = 2004-11-23; Parameter Pixel Size = 10; Parameter Laser on time = 67559; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.22; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 01PB2170; Sample source=PB; CBF group=inv(16)


title: AML 38

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/28219.gif

source_name: CRH

tag: CRH

source_name: AML 38; Sample source=PB; CBF group=t(8;21)


title: 00KM598

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62326.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1840, 6000; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 24.98; Parameter Scan Time = 11:39:36; Parameter PMT Volts = 640; Parameter Scan Date = 2004-10-26; Parameter Pixel Size = 10; Parameter Laser on time = 65236; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.75; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 24.98; Parameter Scan Time = 11:39:36; Parameter PMT Volts = 700; Parameter Scan Date = 2004-10-26; Parameter Pixel Size = 10; Parameter Laser on time = 65197; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.16; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 00KM598; Sample source=BM; CBF group=t(8;21)


title: 98KM25

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62535.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1480, 4200; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 27.12; Parameter Scan Time = 11:19:15; Parameter PMT Volts = 580; Parameter Scan Date = 2004-11-23; Parameter Pixel Size = 10; Parameter Laser on time = 67582; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.72; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 27.12; Parameter Scan Time = 11:19:15; Parameter PMT Volts = 660; Parameter Scan Date = 2004-11-23; Parameter Pixel Size = 10; Parameter Laser on time = 67543; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.20; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 98KM25; Sample source=BM; CBF group=inv(16)


title: 03PB1254

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62537.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1480, 3920; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 28.16; Parameter Scan Time = 11:50:09; Parameter PMT Volts = 590; Parameter Scan Date = 2004-11-23; Parameter Pixel Size = 10; Parameter Laser on time = 67614; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.72; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 28.16; Parameter Scan Time = 11:50:09; Parameter PMT Volts = 670; Parameter Scan Date = 2004-11-23; Parameter Pixel Size = 10; Parameter Laser on time = 67575; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.24; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 03PB1254; Sample source=PB; CBF group=inv(16)


title: 96PB250

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62440.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1760, 5080; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.05; Parameter Scan Time = 13:04:02; Parameter PMT Volts = 580; Parameter Scan Date = 2004-12-03; Parameter Pixel Size = 10; Parameter Laser on time = 68855; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.73; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.05; Parameter Scan Time = 13:04:02; Parameter PMT Volts = 710; Parameter Scan Date = 2004-12-03; Parameter Pixel Size = 10; Parameter Laser on time = 68816; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.27; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 96PB250; Sample source=PB; CBF group=inv(16)


title: 02KM1787

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62533.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1840, 5760; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 25.35; Parameter Scan Time = 10:50:02; Parameter PMT Volts = 590; Parameter Scan Date = 2004-11-23; Parameter Pixel Size = 10; Parameter Laser on time = 67551; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.73; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 25.35; Parameter Scan Time = 10:50:02; Parameter PMT Volts = 650; Parameter Scan Date = 2004-11-23; Parameter Pixel Size = 10; Parameter Laser on time = 67512; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.15; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 02KM1787; Sample source=BM; CBF group=t(8;21)


title: Hela tTa Cy3  vs Bat3 sense Cy5 -1

description:
Simple annotation: Expression Library, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47648.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1760, 4640; Parameter Datafile type = GenePix Results 2; Software: type: feature extraction; Performer: Annie,,Chang Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 28.71; Parameter Scan Time = 14:36:15; Parameter PMT Volts = 540; Parameter Scan Date = 2003-12-16; Parameter Pixel Size = 10; Parameter Laser on time = 27692; Parameter Scanner Model = GenePix 4000B [82726]; Parameter Scan Power = 100; Parameter Laser Power = 4.20; Parameter Scanning software version = 2.0.2.4; Parameter Scanning software = AxImageIO; Performer: Annie,,Chang Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 28.71; Parameter Scan Time = 14:36:15; Parameter PMT Volts = 550; Parameter Scan Date = 2003-12-16; Parameter Pixel Size = 10; Parameter Laser on time = 59915; Parameter Scanner Model = GenePix 4000B [82726]; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.4; Parameter Laser Power = 3.38; Parameter Scanning software = AxImageIO; Performer: Annie,,Chang

source_name: HelaTta

tag: HelaTta

source_name: BAT3 sense3

tag: BAT3 sense3


title: AML 103

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26247.gif

source_name: AML 103; Sample source=PB; CBF group=inv(16)


title: AML 65

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26249.gif

source_name: AML 65; Sample source=PB; CBF group=inv(16)


title: GVA 101 14d A vs OVX-34-2

type: genomic

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2006-07/69229.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1790, 42780; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.64; Parameter Scan Time = 10:02:00; Parameter PMT Volts = 700; Parameter Scan Date = 2006-07-12; Parameter Pixel Size = 10; Parameter Laser on time = 87409; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.50; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.64; Parameter Scan Time = 10:02:00; Parameter PMT Volts = 700; Parameter Scan Date = 2006-07-12; Parameter Pixel Size = 10; Parameter Laser on time = 87835; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.59; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

molecule: genomic DNA

organism: Helicobacter pylori

source_name: 0.5 ug genomic DNA OVX-34

tag: 0.5 ug genomic DNA OVX-34

source_name: 0.5 ug genomic DNA GVA 101 14d A

tag: 0.5 ug genomic DNA GVA 101 14d A


title: 02KM1478

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62307.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2040, 5920; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 27.85; Parameter Scan Time = 13:21:41; Parameter PMT Volts = 590; Parameter Scan Date = 2004-09-29; Parameter Pixel Size = 10; Parameter Laser on time = 62126; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.74; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.6; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 27.85; Parameter Scan Time = 13:21:41; Parameter PMT Volts = 720; Parameter Scan Date = 2004-09-29; Parameter Pixel Size = 10; Parameter Laser on time = 62085; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.25; Parameter Scanning software version = 2.0.2.6; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: aCR (Stratagene)

source_name: 02KM1478; Sample source=BM; CBF group=inv(16)


title: Hela vs Bat3 sense

description:
Simple annotation: gene overexpression, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2003-10/46270.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1720, 5080; Parameter Datafile type = GenePix Results 2; Software: type: feature extraction; Performer: Annie,,Chang Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 25.20; Parameter Scan Time = 14:49:06; Parameter PMT Volts = 550; Parameter Scan Date = 2003-10-03; Parameter Pixel Size = 10; Parameter Laser on time = 26310; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82726]; Parameter Laser Power = 4.11; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.4; Parameter Scanning software = AxImageIO; Performer: Annie,,Chang Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 25.20; Parameter Scan Time = 14:49:06; Parameter PMT Volts = 700; Parameter Scan Date = 2003-10-03; Parameter Pixel Size = 10; Parameter Laser on time = 58534; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82726]; Parameter Laser Power = 3.34; Parameter Scanning software version = 2.0.2.4; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Annie,,Chang

source_name: hela tta

tag: hela tta


title: AML 48

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/28217.gif

source_name: AML 48; Sample source=PB; CBF group=t(8;21)


title: GVA 104 14d B vs OVX-34-3

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2006-07/69242.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1990, 43230; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.45; Parameter Scan Time = 07:56:14; Parameter PMT Volts = 630; Parameter Scan Date = 2006-07-07; Parameter Pixel Size = 10; Parameter Laser on time = 87383; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.51; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.45; Parameter Scan Time = 07:56:14; Parameter PMT Volts = 710; Parameter Scan Date = 2006-07-07; Parameter Pixel Size = 10; Parameter Laser on time = 87810; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.61; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

source_name: 0.5 ug genomic DNA GVA 104 14d B

tag: 0.5 ug genomic DNA GVA 104 14d B


title: AML 77

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26246.gif

source_name: CRH

source_name: AML 77; Sample source=BM; CBF group=inv(16)


title: 02PB2316

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62306.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2080, 6120; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 27.79; Parameter Scan Time = 13:08:22; Parameter PMT Volts = 590; Parameter Scan Date = 2004-09-29; Parameter Pixel Size = 10; Parameter Laser on time = 62113; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.73; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.6; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 27.79; Parameter Scan Time = 13:08:22; Parameter PMT Volts = 700; Parameter Scan Date = 2004-09-29; Parameter Pixel Size = 10; Parameter Laser on time = 62072; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.25; Parameter Scanning software version = 2.0.2.6; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 02PB2316; Sample source=PB; CBF group=inv(16)


title: 00PB667

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62888.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1400, 5440; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 29.38; Parameter Scan Time = 15:11:37; Parameter PMT Volts = 570; Parameter Scan Date = 2004-11-05; Parameter Pixel Size = 10; Parameter Laser on time = 65950; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.76; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 29.38; Parameter Scan Time = 15:11:37; Parameter PMT Volts = 740; Parameter Scan Date = 2004-11-05; Parameter Pixel Size = 10; Parameter Laser on time = 65911; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.29; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 00PB667; Sample source=PB; CBF group=inv(16)


title: 04PB820

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62324.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1440, 4280; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 26.30; Parameter Scan Time = 11:54:36; Parameter PMT Volts = 590; Parameter Scan Date = 2004-11-02; Parameter Pixel Size = 10; Parameter Laser on time = 65575; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.74; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 26.30; Parameter Scan Time = 11:54:36; Parameter PMT Volts = 690; Parameter Scan Date = 2004-11-02; Parameter Pixel Size = 10; Parameter Laser on time = 65536; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.18; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 04PB820; Sample source=PB; CBF group=inv(16)


title: 03KM2806

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62305.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2000, 5280; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 27.64; Parameter Scan Time = 12:48:17; Parameter PMT Volts = 590; Parameter Scan Date = 2004-09-29; Parameter Pixel Size = 10; Parameter Laser on time = 62093; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.74; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.6; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 27.64; Parameter Scan Time = 12:48:17; Parameter PMT Volts = 690; Parameter Scan Date = 2004-09-29; Parameter Pixel Size = 10; Parameter Laser on time = 62052; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.26; Parameter Scanning software version = 2.0.2.6; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 03KM2806; Sample source=BM; CBF group=t(8;21)


title: 98PB845

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62890.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1920, 5440; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 27.06; Parameter Scan Time = 12:21:45; Parameter PMT Volts = 570; Parameter Scan Date = 2004-11-19; Parameter Pixel Size = 10; Parameter Laser on time = 67368; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.71; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 27.06; Parameter Scan Time = 12:21:45; Parameter PMT Volts = 740; Parameter Scan Date = 2004-11-19; Parameter Pixel Size = 10; Parameter Laser on time = 67329; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.19; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 98PB845; Sample source=PB; CBF group=t(8;21)


title: GVA 105 90d A vs OVX-34

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2006-06/69058.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2120, 8880; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.98; Parameter Scan Time = 13:23:40; Parameter PMT Volts = 590; Parameter Scan Date = 2006-06-29; Parameter Pixel Size = 10; Parameter Laser on time = 87190; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.52; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.98; Parameter Scan Time = 13:23:40; Parameter PMT Volts = 870; Parameter Scan Date = 2006-06-29; Parameter Pixel Size = 10; Parameter Laser on time = 87617; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.67; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

source_name: 0.5 ug genomic DNA GVA 105 90d A

tag: 0.5 ug genomic DNA GVA 105 90d A


title: GVA 104 90d B vs OVX-34-3

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2006-07/69243.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1400, 16360; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.45; Parameter Scan Time = 08:02:30; Parameter PMT Volts = 630; Parameter Scan Date = 2006-07-07; Parameter Pixel Size = 10; Parameter Laser on time = 87390; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.51; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.45; Parameter Scan Time = 08:02:30; Parameter PMT Volts = 800; Parameter Scan Date = 2006-07-07; Parameter Pixel Size = 10; Parameter Laser on time = 87816; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.61; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

source_name: 0.5 ug genomic DNA GVA 104 90d B

tag: 0.5 ug genomic DNA GVA 104 90d B


title: 01KM2324

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62895.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1840, 5280; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 28.34; Parameter Scan Time = 12:52:29; Parameter PMT Volts = 600; Parameter Scan Date = 2004-11-19; Parameter Pixel Size = 10; Parameter Laser on time = 67397; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.72; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 28.34; Parameter Scan Time = 12:52:29; Parameter PMT Volts = 750; Parameter Scan Date = 2004-11-19; Parameter Pixel Size = 10; Parameter Laser on time = 67358; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.23; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 01KM2324; Sample source=BM; CBF group=t(8;21)


title: GVA 105 90d A vs OVX-34-3

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2006-07/69237.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1400, 16360; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.48; Parameter Scan Time = 08:07:59; Parameter PMT Volts = 600; Parameter Scan Date = 2006-07-07; Parameter Pixel Size = 10; Parameter Laser on time = 87395; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.51; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.48; Parameter Scan Time = 08:07:59; Parameter PMT Volts = 900; Parameter Scan Date = 2006-07-07; Parameter Pixel Size = 10; Parameter Laser on time = 87822; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.61; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

source_name: 0.5 ug genomic DNA OVX-34


title: AML 84

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33500.gif

source_name: AML 84; Sample source=BM; CBF group=inv(16)


title: 04KM771

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62889.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1920, 5440; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 25.84; Parameter Scan Time = 12:01:55; Parameter PMT Volts = 580; Parameter Scan Date = 2004-11-19; Parameter Pixel Size = 10; Parameter Laser on time = 67346; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.72; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 25.84; Parameter Scan Time = 12:01:55; Parameter PMT Volts = 730; Parameter Scan Date = 2004-11-19; Parameter Pixel Size = 10; Parameter Laser on time = 67307; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.16; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: aCR (Stratagene)

source_name: 04KM771; Sample source=BM; CBF group=inv(16)


title: 95KM350

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62372.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2000, 5160; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 25.93; Parameter Scan Time = 10:42:03; Parameter PMT Volts = 620; Parameter Scan Date = 2004-11-09; Parameter Pixel Size = 10; Parameter Laser on time = 66505; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.72; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 25.93; Parameter Scan Time = 10:42:03; Parameter PMT Volts = 700; Parameter Scan Date = 2004-11-09; Parameter Pixel Size = 10; Parameter Laser on time = 66466; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.19; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 95KM350; Sample source=BM; CBF group=inv(16)


title: 95KM72

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62892.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1840, 5280; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 28.71; Parameter Scan Time = 13:07:34; Parameter PMT Volts = 620; Parameter Scan Date = 2004-11-19; Parameter Pixel Size = 10; Parameter Laser on time = 67414; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.72; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 28.71; Parameter Scan Time = 13:07:34; Parameter PMT Volts = 750; Parameter Scan Date = 2004-11-19; Parameter Pixel Size = 10; Parameter Laser on time = 67375; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.24; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 95KM72; Sample source=BM; CBF group=t(8;21)


title: AML 26

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/28221.gif

source_name: AML 26; Sample source=PB; CBF group=t(8;21)


title: 03KM766

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62304.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2080, 6240; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 27.39; Parameter Scan Time = 12:31:36; Parameter PMT Volts = 600; Parameter Scan Date = 2004-09-29; Parameter Pixel Size = 10; Parameter Laser on time = 62076; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.76; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.6; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 27.39; Parameter Scan Time = 12:31:36; Parameter PMT Volts = 690; Parameter Scan Date = 2004-09-29; Parameter Pixel Size = 10; Parameter Laser on time = 62035; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.25; Parameter Scanning software version = 2.0.2.6; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 03KM766; Sample source=BM; CBF group=t(8;21)


title: 99PB1387

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62534.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1480, 3800; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 26.42; Parameter Scan Time = 11:04:17; Parameter PMT Volts = 590; Parameter Scan Date = 2004-11-23; Parameter Pixel Size = 10; Parameter Laser on time = 67567; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.73; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 26.42; Parameter Scan Time = 11:04:17; Parameter PMT Volts = 690; Parameter Scan Date = 2004-11-23; Parameter Pixel Size = 10; Parameter Laser on time = 67528; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.17; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 99PB1387; Sample source=PB; CBF group=inv(16)


title: AML 100

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/28565.gif

source_name: CRH

source_name: AML 100; Sample source=PB; CBF group=inv(16)


title: DHT-repeat

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57120.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1680, 5760; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Hongjuan,,Zhao Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.19; Parameter Scan Time = 10:59:32; Parameter PMT Volts = 620; Parameter Scan Date = 2004-11-03; Parameter Pixel Size = 10; Parameter Laser on time = 203987; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.52; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Hongjuan,,Zhao Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.19; Parameter Scan Time = 10:59:32; Parameter PMT Volts = 680; Parameter Scan Date = 2004-11-03; Parameter Pixel Size = 10; Parameter Laser on time = 422921; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.64; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Hongjuan,,Zhao

source_name: Stratagene Universal Human Reference RNA

source_name: DHT-repeat Total RNA

tag: DHT-repeat Total RNA


title: AML 81

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/28566.gif

source_name: AML 81; Sample source=PB; CBF group=inv(16)


title: 03KM2624

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62371.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2000, 5160; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 25.14; Parameter Scan Time = 10:23:20; Parameter PMT Volts = 610; Parameter Scan Date = 2004-11-09; Parameter Pixel Size = 10; Parameter Laser on time = 66485; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.72; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 25.14; Parameter Scan Time = 10:23:20; Parameter PMT Volts = 730; Parameter Scan Date = 2004-11-09; Parameter Pixel Size = 10; Parameter Laser on time = 66446; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.14; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 03KM2624; Sample source=BM; CBF group=t(8;21)


title: GVA 105 90d A vs OVX-34-2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2006-07/69236.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1810, 16150; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.52; Parameter Scan Time = 10:39:18; Parameter PMT Volts = 710; Parameter Scan Date = 2006-07-12; Parameter Pixel Size = 10; Parameter Laser on time = 87446; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.52; Parameter Scan Time = 10:39:18; Parameter PMT Volts = 830; Parameter Scan Date = 2006-07-12; Parameter Pixel Size = 10; Parameter Laser on time = 87872; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.64; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

source_name: 0.5 ug genomic DNA GVA 105 90d A


title: GVA 103 14d A vs OVX-34

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2006-06/69054.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1570, 36010; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.64; Parameter Scan Time = 12:54:16; Parameter PMT Volts = 600; Parameter Scan Date = 2006-06-29; Parameter Pixel Size = 10; Parameter Laser on time = 87162; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.52; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.64; Parameter Scan Time = 12:54:16; Parameter PMT Volts = 800; Parameter Scan Date = 2006-06-29; Parameter Pixel Size = 10; Parameter Laser on time = 87589; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.63; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

source_name: 0.5 ug genomic DNA GVA 103 14d A

tag: 0.5 ug genomic DNA GVA 103 14d A


title: GVA 105 14d A vs OVX-34

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2006-07/69235.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1650, 43450; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.74; Parameter Scan Time = 10:46:21; Parameter PMT Volts = 760; Parameter Scan Date = 2006-07-12; Parameter Pixel Size = 10; Parameter Laser on time = 87452; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.48; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.74; Parameter Scan Time = 10:46:21; Parameter PMT Volts = 820; Parameter Scan Date = 2006-07-12; Parameter Pixel Size = 10; Parameter Laser on time = 87879; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.65; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

source_name: 0.5 ug genomic DNA OVX-34

source_name: 0.5 ug genomic DNA GVA 105 14d A

tag: 0.5 ug genomic DNA GVA 105 14d A


title: AR-knockdown-repeat

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57126.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1120, 5240; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Hongjuan,,Zhao Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.67; Parameter Scan Time = 11:36:42; Parameter PMT Volts = 650; Parameter Scan Date = 2004-11-03; Parameter Pixel Size = 10; Parameter Laser on time = 204023; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.05; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Hongjuan,,Zhao Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.67; Parameter Scan Time = 11:36:42; Parameter PMT Volts = 750; Parameter Scan Date = 2004-11-03; Parameter Pixel Size = 10; Parameter Laser on time = 422958; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.61; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Hongjuan,,Zhao

tag: Stratagene Universal Human Reference RNA

source_name: AR-knockdown-repeat Total RNA

tag: AR-knockdown-repeat Total RNA


title: GVA 103 90d A vs OVX-34-2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2006-07/69232.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1810, 16150; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.40; Parameter Scan Time = 10:33:33; Parameter PMT Volts = 700; Parameter Scan Date = 2006-07-12; Parameter Pixel Size = 10; Parameter Laser on time = 87440; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.40; Parameter Scan Time = 10:33:33; Parameter PMT Volts = 770; Parameter Scan Date = 2006-07-12; Parameter Pixel Size = 10; Parameter Laser on time = 87867; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.63; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

source_name: 0.5 ug genomic DNA GVA 103 90d A

tag: 0.5 ug genomic DNA GVA 103 90d A


title: 02KM801

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47483.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1560, 5160; Parameter Datafile type = GenePix Results 1.4; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.30; Parameter Scan Time = 00:55:51; Parameter PMT Volts = 600; Parameter Scan Date = 2003-10-07; Parameter Pixel Size = 10; Parameter Laser on time = 125105; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.36; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.30; Parameter Scan Time = 00:55:51; Parameter PMT Volts = 710; Parameter Scan Date = 2003-10-07; Parameter Pixel Size = 10; Parameter Laser on time = 344076; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.95; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 02KM801; Sample source=BM; CBF group=inv(16)


title: 02KM1591

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62370.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2000, 5160; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 24.37; Parameter Scan Time = 10:08:20; Parameter PMT Volts = 620; Parameter Scan Date = 2004-11-09; Parameter Pixel Size = 10; Parameter Laser on time = 66468; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.72; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 24.37; Parameter Scan Time = 10:08:20; Parameter PMT Volts = 720; Parameter Scan Date = 2004-11-09; Parameter Pixel Size = 10; Parameter Laser on time = 66429; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83305]; Parameter Laser Power = 3.13; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: aCR (Stratagene)

source_name: 02KM1591; Sample source=BM; CBF group=inv(16)


title: GVA 101 90d A vsOVX-34

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2006-06/69053.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1330, 9180; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.64; Parameter Scan Time = 12:57:55; Parameter PMT Volts = 600; Parameter Scan Date = 2006-06-29; Parameter Pixel Size = 10; Parameter Laser on time = 87165; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.52; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.64; Parameter Scan Time = 12:57:55; Parameter PMT Volts = 800; Parameter Scan Date = 2006-06-29; Parameter Pixel Size = 10; Parameter Laser on time = 87592; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.63; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

source_name: 0.5 ug genomic DNA GVA 101 90d A

tag: 0.5 ug genomic DNA GVA 101 90d A


title: GVA 103 14d A vs OVX-34-2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2006-07/69231.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1790, 42780; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.73; Parameter Scan Time = 10:06:55; Parameter PMT Volts = 720; Parameter Scan Date = 2006-07-12; Parameter Pixel Size = 10; Parameter Laser on time = 87413; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.50; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.73; Parameter Scan Time = 10:06:55; Parameter PMT Volts = 740; Parameter Scan Date = 2006-07-12; Parameter Pixel Size = 10; Parameter Laser on time = 87840; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.60; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: 01KM469

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47449.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1400, 5200; Parameter Datafile type = GenePix Results 1.4; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.06; Parameter Scan Time = 23:45:50; Parameter PMT Volts = 600; Parameter Scan Date = 2003-10-12; Parameter Pixel Size = 10; Parameter Laser on time = 127620; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.37; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.06; Parameter Scan Time = 23:45:50; Parameter PMT Volts = 710; Parameter Scan Date = 2003-10-12; Parameter Pixel Size = 10; Parameter Laser on time = 346591; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.92; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 01KM469; Sample source=BM; CBF group=inv(16)


title: GVA 104 90d B vs OVX-34-2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2006-07/69234.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1810, 16150; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.22; Parameter Scan Time = 10:27:07; Parameter PMT Volts = 730; Parameter Scan Date = 2006-07-12; Parameter Pixel Size = 10; Parameter Laser on time = 87433; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.22; Parameter Scan Time = 10:27:07; Parameter PMT Volts = 760; Parameter Scan Date = 2006-07-12; Parameter Pixel Size = 10; Parameter Laser on time = 87860; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.62; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

source_name: 0.5 ug genomic DNA GVA 104 90d B


title: DvH_30min._air__Oxygen_set983

city: Berkeley

first: Adam

middle: P.

last: Arkin

address: 1 Cyclotron Road

department: Physical Biosciences Division

institute: Virtual Institute for Microbial Stress and Survival

description: This sample is one of a series of samples used to investigate the stress response pathways of Desulfovibrio vulgaris Hildenborough treated with Oxygen. This sample was treated with air  Oxygen.  Treatment time point = 30 min.

hyb_protocol: He, Z., Wu, L., Li, X., Fields, M., and Zhou, J. 2005.  Empirical Establishment of Oligonucleotide Probe Design Criteria. Appl. Environ. Microbiol. 71:3753-3760.

scan_protocol: ImaGene software

data_processing: See Methods in: S. R. Chhabra, Q. He, K. H. Huang, S. P. Gaucher, E. J. Alm, Z. He, M. Z. Hadi, T. C. Hazen, J. D. Wall, J. Zhou, A.  . Arkin, and A. K. Singh, Global Analysis of Heat Shock Response in Desulfovibrio vulgaris Hildenborough, J Bacteriol. 2006 March; 188(5): 1817-1828. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=16484192

organism: Nitratidesulfovibrio vulgaris str. Hildenborough

source_name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, 30min. air  Oxygen

growth_protocol: Desulfovibrio vulgaris Hildenborough (ATCC 29579) was grown in a defined lactate (60 mM)/sulfate (50 mM) medium, LS4D at 30°C in 1L bottle fitted with a gas tight apparatus used for sparging. Humidified gas was used to sparge D. vulgaris cultures in gas tight 1L bottles. The sparge rate was 200 ml/min.

treatment_protocol: 30min. air  Oxygen.

tag: str. Hildenborough

source_name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, genomic DNA.


title: GVA 103 90d A vs OVX-34

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2006-06/69055.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1330, 8710; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.71; Parameter Scan Time = 13:02:41; Parameter PMT Volts = 640; Parameter Scan Date = 2006-06-29; Parameter Pixel Size = 10; Parameter Laser on time = 87171; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.52; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.71; Parameter Scan Time = 13:02:41; Parameter PMT Volts = 850; Parameter Scan Date = 2006-06-29; Parameter Pixel Size = 10; Parameter Laser on time = 87598; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.64; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: DvH_240min._air__Oxygen_set991

description: This sample is one of a series of samples used to investigate the stress response pathways of Desulfovibrio vulgaris Hildenborough treated with Oxygen. This sample was treated with air  Oxygen.  Treatment time point = 240 min.

source_name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, 240min. air  Oxygen

label_protocol: He, Z., Wu, L., Li, X., Fields, M., and Zhou, J.  2005. Empirical Establishment of Oligonucleotide Probe Design Criteria. Appl. Environ. Microbiol. 71:3753-3760.

treatment_protocol: 240min. air  Oxygen.


title: 01PB2190

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47446.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1880, 5600; Parameter Datafile type = GenePix Results 1.4; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.66; Parameter Scan Time = 23:08:32; Parameter PMT Volts = 600; Parameter Scan Date = 2003-10-12; Parameter Pixel Size = 10; Parameter Laser on time = 127583; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 4.08; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.66; Parameter Scan Time = 23:08:32; Parameter PMT Volts = 730; Parameter Scan Date = 2003-10-12; Parameter Pixel Size = 10; Parameter Laser on time = 346554; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.91; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: CRH

tag: CRH

source_name: 01PB2190; Sample source=PB; CBF group=t(8;21)


title: GVA 101 14d A vs OVX-34

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2006-06/69052.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1650, 35700; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.74; Parameter Scan Time = 12:46:52; Parameter PMT Volts = 600; Parameter Scan Date = 2006-06-29; Parameter Pixel Size = 10; Parameter Laser on time = 87154; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.47; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.74; Parameter Scan Time = 12:46:52; Parameter PMT Volts = 770; Parameter Scan Date = 2006-06-29; Parameter Pixel Size = 10; Parameter Laser on time = 87581; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.61; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

source_name: 0.5 ug genomic DNA GVA 101 14d A


title: GVA 104 14d B vs OVX-34-2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2006-07/69233.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1630, 42690; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.03; Parameter Scan Time = 10:21:46; Parameter PMT Volts = 740; Parameter Scan Date = 2006-07-12; Parameter Pixel Size = 10; Parameter Laser on time = 87429; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.03; Parameter Scan Time = 10:21:46; Parameter PMT Volts = 750; Parameter Scan Date = 2006-07-12; Parameter Pixel Size = 10; Parameter Laser on time = 87855; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.62; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

source_name: 0.5 ug genomic DNA GVA 104 14d B


title: CS-repeat

description:
Simple annotation: prostate cancer, androgen
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57124.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1200, 5160; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Hongjuan,,Zhao Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.49; Parameter Scan Time = 11:23:54; Parameter PMT Volts = 650; Parameter Scan Date = 2004-11-03; Parameter Pixel Size = 10; Parameter Laser on time = 204011; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.21; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Hongjuan,,Zhao Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.49; Parameter Scan Time = 11:23:54; Parameter PMT Volts = 700; Parameter Scan Date = 2004-11-03; Parameter Pixel Size = 10; Parameter Laser on time = 422946; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.63; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Hongjuan,,Zhao

source_name: Stratagene Universal Human Reference RNA

source_name: CS-repeat Total RNA

tag: CS-repeat Total RNA


title: GVA 101 90d A vsOVX-34-2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2006-07/69230.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1400, 15800; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.55; Parameter Scan Time = 09:55:32; Parameter PMT Volts = 640; Parameter Scan Date = 2006-07-12; Parameter Pixel Size = 10; Parameter Laser on time = 87402; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.50; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.55; Parameter Scan Time = 09:55:32; Parameter PMT Volts = 800; Parameter Scan Date = 2006-07-12; Parameter Pixel Size = 10; Parameter Laser on time = 87829; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.59; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

source_name: 0.5 ug genomic DNA OVX-34


title: DvH_10min._air__Oxygen_set979

description: This sample is one of a series of samples used to investigate the stress response pathways of Desulfovibrio vulgaris Hildenborough treated with Oxygen. This sample was treated with air  Oxygen.  Treatment time point = 10 min.

source_name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, 10min. air  Oxygen

extract_protocol: He, Z., Wu, L., Li, X., Fields, M., and Zhou, J.  2005. Empirical Establishment of Oligonucleotide Probe Design Criteria. Appl. Environ. Microbiol. 71:3753-3760.

treatment_protocol: 10min. air  Oxygen.


title: Tumor_133

description:
Simple annotation: Liver, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2006-12/71340.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1280, 5480; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Adam,,Adler Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 29.10; Parameter Scan Time = 11:52:13; Parameter PMT Volts = 470; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 15742; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 29.10; Parameter Scan Time = 11:52:13; Parameter PMT Volts = 500; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 258491; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.45; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler

source_name: Universal Human Reference

label_protocol: Human Cy3 - Chen et al; Incorporation of Cy3-labeled deoxynucleotides was as described (Chen et al., Mol Biol Cell,2002).; Protocol Type = Labeling; Performer: Adam,,Adler

extract_protocol:
StratageneRef; RNA for the reference was pooled from 11 cell lines - obtained from Stratagene.; Protocol Type = Biological Sample; Performer: Adam,,Adler
MessageAmpII; Total RNA was amplified using the Message AmpTM II aRNA Kit (Ambion, Austin, TX), according to the manufacturer's instructions.; Protocol Type = Amplification; Performer: Adam,,Adler

tag: Universal Human Reference

label_protocol: Human Cy5 - Chen et al; Incorporation of Cy5-labeled deoxynucleotides was as described (Chen et al., Mol Biol Cell, 2002).; Protocol Type = Labeling; Performer: Adam,,Adler

extract_protocol:
Primary Tumor; RNA was obtained from primary tumor sample.; Protocol Type = Biological Sample; Performer: Adam,,Adler
MessageAmpII; RNA was amplified using the Message AmpTM II aRNA Kit (Ambion, Austin, TX) according to the manufacturer's instructions.; Protocol Type = Amplification; Performer: Adam,,Adler


title: DvH_0min._air__Oxygen_set975

description: This sample is one of a series of samples used to investigate the stress response pathways of Desulfovibrio vulgaris Hildenborough treated with Oxygen. This sample was treated with air  Oxygen.  Treatment time point = 0 min.

source_name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, 0min. air  Oxygen

treatment_protocol: 0min. air  Oxygen.


title: 01KM632

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47474.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1560, 5240; Parameter Datafile type = GenePix Results 1.4; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.63; Parameter Scan Time = 23:21:03; Parameter PMT Volts = 600; Parameter Scan Date = 2003-10-06; Parameter Pixel Size = 10; Parameter Laser on time = 125010; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.93; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.63; Parameter Scan Time = 23:21:03; Parameter PMT Volts = 750; Parameter Scan Date = 2003-10-06; Parameter Pixel Size = 10; Parameter Laser on time = 343981; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.92; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 01KM632; Sample source=BM; CBF group=t(8;21)


title: OVX-34 vs 26695/J99 mix-3

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2006-06/68919.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1720, 35790; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.40; Parameter Scan Time = 10:02:08; Parameter PMT Volts = 650; Parameter Scan Date = 2006-06-14; Parameter Pixel Size = 10; Parameter Laser on time = 87066; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.48; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.40; Parameter Scan Time = 10:02:08; Parameter PMT Volts = 750; Parameter Scan Date = 2006-06-14; Parameter Pixel Size = 10; Parameter Laser on time = 87493; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.64; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

tag: 0.5 ug genomic DNA OVX-34


title: 01PB1332

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47476.gif

scan_protocol: na Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1400, 5400; Parameter Datafile type = GenePix Results 1.4; Software: type: feature extraction; Performer: Lars,,Bullinger Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.78; Parameter Scan Time = 23:47:20; Parameter PMT Volts = 610; Parameter Scan Date = 2003-10-06; Parameter Pixel Size = 10; Parameter Laser on time = 125037; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.96; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.78; Parameter Scan Time = 23:47:20; Parameter PMT Volts = 700; Parameter Scan Date = 2003-10-06; Parameter Pixel Size = 10; Parameter Laser on time = 344008; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.93; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lars,,Bullinger

source_name: 01PB1332; Sample source=PB; CBF group=t(8;21)


title: DvH_120min._air__Oxygen_set987

description: This sample is one of a series of samples used to investigate the stress response pathways of Desulfovibrio vulgaris Hildenborough treated with Oxygen. This sample was treated with air  Oxygen.  Treatment time point = 120 min.

source_name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, 120min. air  Oxygen

treatment_protocol: 120min. air  Oxygen.


title: GVA 104 14d B vs OVX-34

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2006-06/69056.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1970, 36020; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.19; Parameter Scan Time = 13:44:23; Parameter PMT Volts = 590; Parameter Scan Date = 2006-06-29; Parameter Pixel Size = 10; Parameter Laser on time = 87212; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.52; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.19; Parameter Scan Time = 13:44:23; Parameter PMT Volts = 830; Parameter Scan Date = 2006-06-29; Parameter Pixel Size = 10; Parameter Laser on time = 87639; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.69; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama