title: Tumor_387

description:
Simple annotation: Liver, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2006-12/71357.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 640, 4520; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Adam,,Adler Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.94; Parameter Scan Time = 15:25:47; Parameter PMT Volts = 540; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 15956; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.94; Parameter Scan Time = 15:25:47; Parameter PMT Volts = 610; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 258704; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.49; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler

source_name: Universal Human Reference

label_protocol: Human Cy3 - Chen et al; Incorporation of Cy3-labeled deoxynucleotides was as described (Chen et al., Mol Biol Cell,2002).; Protocol Type = Labeling; Performer: Adam,,Adler

extract_protocol:
StratageneRef; RNA for the reference was pooled from 11 cell lines - obtained from Stratagene.; Protocol Type = Biological Sample; Performer: Adam,,Adler
MessageAmpII; Total RNA was amplified using the Message AmpTM II aRNA Kit (Ambion, Austin, TX), according to the manufacturer's instructions.; Protocol Type = Amplification; Performer: Adam,,Adler

tag: Universal Human Reference

label_protocol: Human Cy5 - Chen et al; Incorporation of Cy5-labeled deoxynucleotides was as described (Chen et al., Mol Biol Cell, 2002).; Protocol Type = Labeling; Performer: Adam,,Adler

extract_protocol:
Primary Tumor; RNA was obtained from primary tumor sample.; Protocol Type = Biological Sample; Performer: Adam,,Adler
MessageAmpII; RNA was amplified using the Message AmpTM II aRNA Kit (Ambion, Austin, TX) according to the manufacturer's instructions.; Protocol Type = Amplification; Performer: Adam,,Adler


title: 259a2 vs Tigr/Astra ref-2

status: Public on Aug 09 2007

type: genomic

city: Stanford

last: Stanford Microarray Database

state: CA

address: 300 Pasteur Drive

department: Stanford University, School of Medicine

country: USA

institute: Stanford Microarray Database (SMD)

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36726.gif

hyb_protocol: not provided

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1110, 39370; Parameter Datafile type = GenePix Results 1.4; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.80; Parameter Scan Time = 10:40:19; Parameter PMT Volts = 500; Parameter Scan Date = 2002-11-07; Parameter Pixel Size = 10; Parameter Laser on time = 62134; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83966]; Parameter Laser Power = 3.60; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.80; Parameter Scan Time = 10:40:19; Parameter PMT Volts = 610; Parameter Scan Date = 2002-11-07; Parameter Pixel Size = 10; Parameter Laser on time = 59653; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83966]; Parameter Laser Power = 3.68; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

data_processing: VALUE is Log (base 2) of the ratio of the median of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

molecule: genomic DNA

organism: Helicobacter pylori

source_name: 0.25 ug Tigr/Astra genomic DNA reference

label_protocol: not provided

extract_protocol: not provided

source_name: 0.25 ug 259a2 genomic DNA

tag: 0.25 ug 259a2 genomic DNA


title: Tumor_261

type: RNA

description:
Simple annotation: Liver, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2006-12/71348.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 800, 5200; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Adam,,Adler Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.02; Parameter Scan Time = 12:36:04; Parameter PMT Volts = 540; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 15787; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.02; Parameter Scan Time = 12:36:04; Parameter PMT Volts = 610; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 258536; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.48; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler

molecule: total RNA

organism: Homo sapiens


title: 259c9 rep2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32400.gif

scan_protocol: not provided

source_name: 0.25 ug Tigr/Astra Reference

tag: 0.25 ug Tigr/Astra Reference


title: 259a2 vs Tigr/Astra ref

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2003-01/36725.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 790, 11220; Parameter Datafile type = GenePix Results 1.4; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.86; Parameter Scan Time = 10:43:49; Parameter PMT Volts = 500; Parameter Scan Date = 2002-11-07; Parameter Pixel Size = 10; Parameter Laser on time = 62138; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83966]; Parameter Laser Power = 3.60; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.86; Parameter Scan Time = 10:43:49; Parameter PMT Volts = 610; Parameter Scan Date = 2002-11-07; Parameter Pixel Size = 10; Parameter Laser on time = 59656; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [83966]; Parameter Laser Power = 3.65; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

tag: 0.25 ug Tigr/Astra genomic DNA reference


title: 249a2 rep2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32403.gif


title: Tumor_297

description:
Simple annotation: Liver, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2006-12/71355.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 520, 4520; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Adam,,Adler Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.87; Parameter Scan Time = 15:08:23; Parameter PMT Volts = 560; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 15939; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.87; Parameter Scan Time = 15:08:23; Parameter PMT Volts = 610; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 258688; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.53; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler


title: Tumor_253

description:
Simple annotation: Liver, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2006-12/71347.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 720, 5360; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Adam,,Adler Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 29.87; Parameter Scan Time = 12:28:16; Parameter PMT Volts = 540; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 15779; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 29.87; Parameter Scan Time = 12:28:16; Parameter PMT Volts = 610; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 258528; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.48; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler


title: 259f1 rep2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32401.gif


title: 259i8 rep2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32402.gif


title: Tumor_262

description:
Simple annotation: Liver, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2006-12/71349.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 600, 5160; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Adam,,Adler Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.51; Parameter Scan Time = 13:50:04; Parameter PMT Volts = 560; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 15861; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.51; Parameter Scan Time = 13:50:04; Parameter PMT Volts = 600; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 258609; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.51; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler


title: Tumor_360

description:
Simple annotation: Liver, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2006-12/71356.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 600, 4360; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Adam,,Adler Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.42; Parameter Scan Time = 13:40:36; Parameter PMT Volts = 550; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 15851; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.42; Parameter Scan Time = 13:40:36; Parameter PMT Volts = 610; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 258599; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.48; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler


title: 259i8 vs Tigr/Astra ref

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-07/30948.gif

source_name: 0.25 ug 259i8 genomic DNA

tag: 0.25 ug 259i8 genomic DNA


title: Tumor_252

description:
Simple annotation: Liver, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2006-12/71346.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 720, 5200; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Adam,,Adler Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 28.46; Parameter Scan Time = 11:20:27; Parameter PMT Volts = 530; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 15711; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 28.46; Parameter Scan Time = 11:20:27; Parameter PMT Volts = 570; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 258460; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.45; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler


title: Tumor_291

description:
Simple annotation: Liver, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2006-12/71354.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 680, 4760; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Adam,,Adler Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.90; Parameter Scan Time = 15:17:47; Parameter PMT Volts = 520; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 15948; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.90; Parameter Scan Time = 15:17:47; Parameter PMT Volts = 610; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 258697; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.53; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler


title: Tumor_289

description:
Simple annotation: Liver, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2006-12/71353.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 640, 4760; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Adam,,Adler Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.78; Parameter Scan Time = 14:27:35; Parameter PMT Volts = 560; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 15897; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.78; Parameter Scan Time = 14:27:35; Parameter PMT Volts = 610; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 258646; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.52; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler


title: Tumor_193

description:
Simple annotation: Liver, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2006-12/71344.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 760, 5400; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Adam,,Adler Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 29.50; Parameter Scan Time = 12:11:18; Parameter PMT Volts = 530; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 15762; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 29.50; Parameter Scan Time = 12:11:18; Parameter PMT Volts = 580; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 258511; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.47; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler


title: Tumor_288

description:
Simple annotation: Liver, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2006-12/71352.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 680, 4520; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Adam,,Adler Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.81; Parameter Scan Time = 14:43:08; Parameter PMT Volts = 560; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 15913; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.81; Parameter Scan Time = 14:43:08; Parameter PMT Volts = 610; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 258662; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.52; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler


title: Tumor_224

description:
Simple annotation: Liver, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2006-12/71345.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 800, 5360; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Adam,,Adler Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.42; Parameter Scan Time = 13:32:41; Parameter PMT Volts = 550; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 15843; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 30.42; Parameter Scan Time = 13:32:41; Parameter PMT Volts = 600; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 258592; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.50; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler


title: 249c6

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32369.gif


title: 259a1 vs Tigr/Astra ref

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-07/30945.gif

source_name: 0.25 ug 259a1 genomic DNA

tag: 0.25 ug 259a1 genomic DNA


title: 251f1 vs Tigr/Astra ref

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-07/30943.gif

source_name: 0.25 ug 251f1 genomic DNA

tag: 0.25 ug 251f1 genomic DNA


title: 251i2 vs Tigr/Astra ref

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-07/30944.gif

source_name: 0.25 ug 251i2 genomic DNA

tag: 0.25 ug 251i2 genomic DNA


title: Tumor_264

description:
Simple annotation: Liver, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2006-12/71350.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 680, 4680; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Adam,,Adler Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 28.77; Parameter Scan Time = 11:33:02; Parameter PMT Volts = 530; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 15723; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 28.77; Parameter Scan Time = 11:33:02; Parameter PMT Volts = 580; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 258472; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.45; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler


title: Tumor_184

description:
Simple annotation: Liver, tumor tissue
Image: http://smd.stanford.edu/MicroArray/gifs/2006-12/71343.gif

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 960, 5360; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Adam,,Adler Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 29.71; Parameter Scan Time = 12:20:04; Parameter PMT Volts = 540; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 15770; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.49; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.2; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 29.71; Parameter Scan Time = 12:20:04; Parameter PMT Volts = 600; Parameter Scan Date = 2006-12-06; Parameter Pixel Size = 10; Parameter Laser on time = 258519; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [84947]; Parameter Laser Power = 3.47; Parameter Scanning software version = 2.0.3.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Adam,,Adler


title: mk653c1-1

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57716.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2080, 9440; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.61; Parameter Scan Time = 17:48:39; Parameter PMT Volts = 690; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54251; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.48; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.61; Parameter Scan Time = 17:48:39; Parameter PMT Volts = 620; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54027; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.84; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

source_name: 0.25 ng 26695/J99 genomic DNA mix

tag: 0.25 ng 26695/J99 genomic DNA mix


title: 251i1

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32398.gif


title: 259a1 rep2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32399.gif


title: 251f2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32397.gif


title: mk653a5-2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57717.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2160, 35920; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.67; Parameter Scan Time = 17:54:15; Parameter PMT Volts = 750; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54256; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.44; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.67; Parameter Scan Time = 17:54:15; Parameter PMT Volts = 620; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54033; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.85; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: mk653a4-2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57714.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2120, 9480; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.83; Parameter Scan Time = 17:58:51; Parameter PMT Volts = 750; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54261; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.23; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.83; Parameter Scan Time = 17:58:51; Parameter PMT Volts = 700; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54037; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.85; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: 249i5 vs Tigr/Astra ref

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-07/30939.gif

scan_protocol: not provided

source_name: 0.25 ug 249i5 genomic DNA

tag: 0.25 ug 249i5 genomic DNA


title: mk653c4-1

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57715.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2160, 35880; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.92; Parameter Scan Time = 18:04:06; Parameter PMT Volts = 700; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54266; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.40; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.92; Parameter Scan Time = 18:04:06; Parameter PMT Volts = 670; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54043; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.85; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: 249f1 vs Tigr/Astra ref

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-07/30938.gif

source_name: 0.25 ug 249f1 genomic DNA

tag: 0.25 ug 249f1 genomic DNA


title: 251a1 vs Tigr/Astra ref

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-07/30940.gif

source_name: 0.25 ug 251a1 genomic DNA

tag: 0.25 ug 251a1 genomic DNA


title: 251c5 vs Tigr/Astra ref

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-07/30941.gif

source_name: 0.25 ug 251c5 genomic DNA

tag: 0.25 ug 251c5 genomic DNA


title: mk323c1-2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57713.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2240, 35960; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.98; Parameter Scan Time = 18:13:20; Parameter PMT Volts = 740; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54275; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.38; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.98; Parameter Scan Time = 18:13:20; Parameter PMT Volts = 640; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54052; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.85; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: 251c1

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32396.gif


title: 259c9 vs Tigr/Astra ref

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-07/30946.gif

source_name: 0.25 ug 259c9 genomic DNA

tag: 0.25 ug 259c9 genomic DNA


title: 249c1 vs Tigr/Astra ref

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-07/30937.gif

source_name: 0.25 ug 249c1 genomic DNA

tag: 0.25 ug 249c1 genomic DNA


title: mk323a2-2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57711.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2160, 36120; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.16; Parameter Scan Time = 18:22:54; Parameter PMT Volts = 790; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54285; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.44; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.16; Parameter Scan Time = 18:22:54; Parameter PMT Volts = 710; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54062; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.85; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: mk291a5-1

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57709.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2470, 35940; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.67; Parameter Scan Time = 13:21:44; Parameter PMT Volts = 780; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53868; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.57; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.67; Parameter Scan Time = 13:21:44; Parameter PMT Volts = 670; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53644; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.83; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: mk291c1-1

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57706.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2280, 9760; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.83; Parameter Scan Time = 13:28:21; Parameter PMT Volts = 790; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53874; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.42; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.83; Parameter Scan Time = 13:28:21; Parameter PMT Volts = 750; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53651; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.84; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: mk323c5-2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57712.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2120, 9640; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.95; Parameter Scan Time = 18:08:35; Parameter PMT Volts = 740; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54271; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.42; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.95; Parameter Scan Time = 18:08:35; Parameter PMT Volts = 670; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54047; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.85; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: mk291a7-1

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57708.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2160, 9520; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.34; Parameter Scan Time = 13:11:07; Parameter PMT Volts = 740; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53857; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.66; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.34; Parameter Scan Time = 13:11:07; Parameter PMT Volts = 710; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53634; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.81; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: mk291c3-1

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57707.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2400, 36200; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.92; Parameter Scan Time = 13:34:20; Parameter PMT Volts = 770; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53881; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.36; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.92; Parameter Scan Time = 13:34:20; Parameter PMT Volts = 710; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53658; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.84; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: mk653a4-1

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57704.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2200, 10160; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.98; Parameter Scan Time = 13:39:58; Parameter PMT Volts = 690; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53886; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.20; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.98; Parameter Scan Time = 13:39:58; Parameter PMT Volts = 710; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53663; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.84; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: 249f4 rep2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32413.gif


title: 249a1 vs Tigr/Astra ref

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-07/30936.gif

source_name: 0.25 ug 249a1 genomic DNA

tag: 0.25 ug 249a1 genomic DNA


title: 251i2 rep2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32393.gif


title: mk653a5-1

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57705.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2320, 36560; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.98; Parameter Scan Time = 13:46:16; Parameter PMT Volts = 730; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53892; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.19; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.98; Parameter Scan Time = 13:46:16; Parameter PMT Volts = 670; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53669; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.85; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: mk612a3-1

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-12/58101.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2160, 35440; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.85; Parameter Scan Time = 10:58:28; Parameter PMT Volts = 600; Parameter Scan Date = 2004-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 55007; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.60; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.85; Parameter Scan Time = 10:58:28; Parameter PMT Volts = 600; Parameter Scan Date = 2004-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 54682; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.78; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: mk612c10-1

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57724.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2480, 35720; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.03; Parameter Scan Time = 17:14:31; Parameter PMT Volts = 790; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54216; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.91; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.03; Parameter Scan Time = 17:14:31; Parameter PMT Volts = 630; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 53993; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.79; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: mk323c1-1

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57703.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2360, 36480; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.10; Parameter Scan Time = 13:57:53; Parameter PMT Volts = 710; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53904; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.19; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.10; Parameter Scan Time = 13:57:53; Parameter PMT Volts = 670; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53681; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.85; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: 251a3

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32394.gif


title: 251i1 rep2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32422.gif


title: mk323c5-1

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57702.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2320, 10080; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.04; Parameter Scan Time = 13:52:05; Parameter PMT Volts = 700; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53898; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.19; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.04; Parameter Scan Time = 13:52:05; Parameter PMT Volts = 630; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53674; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.85; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: 251c5 rep2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32391.gif


title: mk323a2-1

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57701.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2320, 35880; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.29; Parameter Scan Time = 14:09:59; Parameter PMT Volts = 750; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53916; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.19; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.29; Parameter Scan Time = 14:09:59; Parameter PMT Volts = 680; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53692; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.85; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: mk653c1-3

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-12/58099.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1960, 9080; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.76; Parameter Scan Time = 10:55:11; Parameter PMT Volts = 600; Parameter Scan Date = 2004-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 55003; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.60; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.76; Parameter Scan Time = 10:55:11; Parameter PMT Volts = 600; Parameter Scan Date = 2004-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 54678; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.78; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: 251f1 rep2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32392.gif

scan_protocol: not provided


title: mk323a6-1

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57700.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2080, 9440; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.16; Parameter Scan Time = 14:04:31; Parameter PMT Volts = 770; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53911; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.19; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.16; Parameter Scan Time = 14:04:31; Parameter PMT Volts = 680; Parameter Scan Date = 2004-11-24; Parameter Pixel Size = 10; Parameter Laser on time = 53688; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.85; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: mk653c4-3

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-12/58097.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2120, 35680; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.70; Parameter Scan Time = 10:51:13; Parameter PMT Volts = 610; Parameter Scan Date = 2004-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 54999; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.60; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.70; Parameter Scan Time = 10:51:13; Parameter PMT Volts = 630; Parameter Scan Date = 2004-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 54674; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.77; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: mk612c10-2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-12/58096.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2000, 9200; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.61; Parameter Scan Time = 10:44:55; Parameter PMT Volts = 590; Parameter Scan Date = 2004-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 54993; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.60; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.61; Parameter Scan Time = 10:44:55; Parameter PMT Volts = 610; Parameter Scan Date = 2004-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 54668; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.76; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: mk612a6-2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57723.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2320, 9320; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.76; Parameter Scan Time = 17:08:20; Parameter PMT Volts = 790; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54210; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.40; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.76; Parameter Scan Time = 17:08:20; Parameter PMT Volts = 630; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 53987; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.78; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: mk291a7-2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57722.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2280, 9200; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.19; Parameter Scan Time = 17:20:13; Parameter PMT Volts = 790; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54223; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.33; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.19; Parameter Scan Time = 17:20:13; Parameter PMT Volts = 660; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 53999; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.80; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: mk612a6-1

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-12/58094.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2080, 35480; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.58; Parameter Scan Time = 10:41:04; Parameter PMT Volts = 570; Parameter Scan Date = 2004-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 54989; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.60; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.58; Parameter Scan Time = 10:41:04; Parameter PMT Volts = 590; Parameter Scan Date = 2004-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 54664; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.76; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: mk291c3-2 grn bkgd

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57721.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2440, 36000; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.46; Parameter Scan Time = 17:34:25; Parameter PMT Volts = 750; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54236; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.85; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.46; Parameter Scan Time = 17:34:25; Parameter PMT Volts = 620; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54013; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.82; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

source_name: 500 ng mk291c3-2 grn bkgd

tag: 500 ng mk291c3-2 grn bkgd


title: Gene Identification [strong spatial bias]

description:
Simple annotation: Mutants, Histone deacetylase
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6654.gif

data_processing: VALUE is Log (base 2) of the ratio of the mean of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

organism: Arabidopsis thaliana

source_name: wild-type Arabidopsis seedlings

extract_protocol: Extract preparation - Channel 1; Methods by which RNA/DNA/protein is prepared from a biological sample prior to amplification or labeling for channel 1 (green); Protocol Type = Extract preparation; Parameter Extraction method reference = Ambien RNAWiz; Parameter Extraction method = Commercial_(please_specify); Parameter Extracted molecule = polyA_RNA; Performer: Tom,,Guilfoyle

tag: wild-type Arabidopsis seedlings

source_name: mutant axel-4 seedlings

extract_protocol: Extract preparation - Channel 2; Methods by which RNA/DNA/protein is prepared from a biological sample prior to amplification or labeling for channel 2 (red).; Protocol Type = Extract preparation; Parameter Extraction method reference = Ambien RNAWiz; Parameter Extraction method = Commercial_(please_specify); Parameter Extracted molecule = polyA_RNA; Performer: Tom,,Guilfoyle

tag: mutant axel-4 seedlings


title: Gene Identification - reverse

description:
Simple annotation: Mutants, Histone deacetylase
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/6655.gif


title: dst1 mutant vs WT

description:
Simple annotation: Mutants, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11314.gif

source_name: WT plant

tag: WT plant


title: mk291a5-3

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-12/58093.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1920, 9080; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.51; Parameter Scan Time = 10:36:52; Parameter PMT Volts = 610; Parameter Scan Date = 2004-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 54984; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.60; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.51; Parameter Scan Time = 10:36:52; Parameter PMT Volts = 620; Parameter Scan Date = 2004-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 54659; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.75; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: 259f1 vs Tigr/Astra ref

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-07/30947.gif

source_name: 0.25 ug Tigr/Astra genomic DNA reference

source_name: 0.25 ug 259f1 genomic DNA

tag: 0.25 ug 259f1 genomic DNA


title: mk291c3-3

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-12/58092.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2120, 35400; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.48; Parameter Scan Time = 10:33:47; Parameter PMT Volts = 610; Parameter Scan Date = 2004-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 54982; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.57; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.48; Parameter Scan Time = 10:33:47; Parameter PMT Volts = 620; Parameter Scan Date = 2004-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 54657; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.75; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama


title: HMEC-w +ADvector X HMEC-w +AD-AP2gamma

description:
Simple annotation: Drug_treatment, Breast
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11793.gif

source_name: HMEC-w +ADvector

tag: HMEC-w +ADvector

source_name: HMEC-w +AD-AP2gamma

tag: HMEC-w +AD-AP2gamma


title: mk291c1-2 grn bkgd

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57720.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2320, 9560; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.37; Parameter Scan Time = 17:29:32; Parameter PMT Volts = 750; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54232; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.44; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.37; Parameter Scan Time = 17:29:32; Parameter PMT Volts = 620; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54008; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.81; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

source_name: 500 ng mk291c1-2 grn bkgd

tag: 500 ng mk291c1-2 grn bkgd


title: mk291c1-3

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-12/58091.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2080, 8920; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.24; Parameter Scan Time = 10:24:38; Parameter PMT Volts = 610; Parameter Scan Date = 2004-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 54973; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.56; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.24; Parameter Scan Time = 10:24:38; Parameter PMT Volts = 670; Parameter Scan Date = 2004-12-13; Parameter Pixel Size = 10; Parameter Laser on time = 54648; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.74; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

source_name: 0.25 ng 26695/J99 genomic DNA mix


title: dst1 mutant vs WT (4)

description:
Simple annotation: Mutants, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11329.gif

source_name: WT

tag: WT


title: dst1 mutant vs WT (4 reverse)

description:
Simple annotation: Mutants, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11321.gif


title: dst1 mutant vs WT (2 reverse)

description:
Simple annotation: Mutants, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11337.gif


title: HMEC-w +ADvector X HMEC-w +AD-AP2alpha

description:
Simple annotation: Drug_treatment, Breast
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11799.gif

source_name: HMEC-w +AD-AP2alpha

tag: HMEC-w +AD-AP2alpha


title: HMEC-w +ADvector X HMEC-w +AD-AP2alpha#2

description:
Simple annotation: Drug_treatment, Breast
Image: http://smd.stanford.edu/MicroArray/gifs/2001-02/13716.gif

source_name: HMEC-w +AD-AP2alpha#2

tag: HMEC-w +AD-AP2alpha#2


title: dst1 mutant vs WT (3 reverse)

description:
Simple annotation: Mutants, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11341.gif


title: dst1 mutant vs WT (3)

description:
Simple annotation: Mutants, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11340.gif


title: dst1 mutant vs WT (2)

description:
Simple annotation: Mutants, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11334.gif


title: HMEC-w +ADvector X HMEC-w +AD-AP2gamma#2

description:
Simple annotation: Drug_treatment, Breast
Image: http://smd.stanford.edu/MicroArray/gifs/2001-03/14030.gif

source_name: HMEC-w +AD-AP2gamma#2

tag: HMEC-w +AD-AP2gamma#2


title: dst1 mutant vs WT(reverse)

description:
Simple annotation: Mutants, RNA stability
Image: http://smd.stanford.edu/MicroArray/gifs/2000-11/11317.gif


title: Aluminum Stress 1 [strong spatial bias]

description:
Simple annotation: Stress, metals
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/7304.gif

source_name: Pool of three time points, 3, 8, 24 hr of control-treated Columbia

extract_protocol: TRIzol

source_name: Pool of three time points, 3, 8, 24 hr of AL-treated Columbia

label_protocol:
not provided
Extract preparation - Channel 2; Methods by which RNA/DNA/protein is prepared from a biological sample prior to amplification or labeling for channel 2 (red).; Protocol Type = Extract preparation; Parameter Extraction method = TRIzol; Parameter Extracted molecule = polyA_RNA; Performer: Leon,,Kochian


title: Aluminum Stress 2 [strong spatial bias]

description:
Simple annotation: Stress, metals
Image: http://smd.stanford.edu/MicroArray/gifs/2000-06/7305.gif

label_protocol:
not provided
Extract preparation - Channel 1; Methods by which RNA/DNA/protein is prepared from a biological sample prior to amplification or labeling for channel 1 (green); Protocol Type = Extract preparation; Parameter Extraction method = TRIzol; Parameter Extracted molecule = polyA_RNA; Performer: Leon,,Kochian

tag: Pool of three time points, 3, 8, 24 hr of AL-treated Columbia

tag: Pool of three time points, 3, 8, 24 hr of control-treated Columbia


title: mk323a6-2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/57710.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2120, 9680; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Nina,,Salama Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.04; Parameter Scan Time = 18:18:14; Parameter PMT Volts = 790; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54281; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 5.26; Parameter Scan Power = 10; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 33.04; Parameter Scan Time = 18:18:14; Parameter PMT Volts = 640; Parameter Scan Date = 2004-11-27; Parameter Pixel Size = 10; Parameter Laser on time = 54057; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [92865]; Parameter Laser Power = 3.85; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 33; Parameter Scanning software = AxImageIO; Performer: Nina,,Salama

tag: 0.25 ng 26695/J99 genomic DNA mix


title: 249a2

description:
Simple annotation: Genomic DNA, Strain Comparison
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32368.gif

source_name: 0.25 ug Tigr/Astra Reference

tag: 0.25 ug Tigr/Astra Reference


title: HelatTaCy3DOX vs BAT3ACy5DOX

description:
Simple annotation: gene overexpression, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2004-02/49946.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1800, 4520; Parameter Datafile type = GenePix Results 2; Software: type: feature extraction; Performer: Annie,,Chang Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 27.36; Parameter Scan Time = 14:16:24; Parameter PMT Volts = 600; Parameter Scan Date = 2004-02-27; Parameter Pixel Size = 10; Parameter Laser on time = 30384; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82726]; Parameter Laser Power = 4.31; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.4; Parameter Scanning software = AxImageIO; Performer: Annie,,Chang Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 27.36; Parameter Scan Time = 14:16:24; Parameter PMT Volts = 680; Parameter Scan Date = 2004-02-27; Parameter Pixel Size = 10; Parameter Laser on time = 62608; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82726]; Parameter Laser Power = 3.33; Parameter Scanning software version = 2.0.2.4; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Annie,,Chang

source_name: HelatTADox

tag: HelatTADox


title: BAT3ACy5 vs BAT3ADoxCy3b

description:
Simple annotation: gene overexpression, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2004-02/49947.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1800, 4520; Parameter Datafile type = GenePix Results 2; Software: type: feature extraction; Performer: Annie,,Chang Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 25.72; Parameter Scan Time = 13:43:52; Parameter PMT Volts = 610; Parameter Scan Date = 2004-02-27; Parameter Pixel Size = 10; Parameter Laser on time = 30362; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82726]; Parameter Laser Power = 4.30; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.4; Parameter Scanning software = AxImageIO; Performer: Annie,,Chang Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 25.72; Parameter Scan Time = 13:43:52; Parameter PMT Volts = 650; Parameter Scan Date = 2004-02-27; Parameter Pixel Size = 10; Parameter Laser on time = 62585; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82726]; Parameter Laser Power = 3.31; Parameter Scanning software version = 2.0.2.4; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Annie,,Chang


title: BAT3SCy5 vs BAT3SDoxCy3

description:
Simple annotation: gene overexpression, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2004-02/49583.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1640, 4730; Parameter Datafile type = GenePix Results 2; Software: type: feature extraction; Performer: Annie,,Chang Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 29.68; Parameter Scan Time = 17:03:57; Parameter PMT Volts = 640; Parameter Scan Date = 2004-02-19; Parameter Pixel Size = 10; Parameter Laser on time = 29885; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82726]; Parameter Laser Power = 4.27; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.4; Parameter Scanning software = AxImageIO; Performer: Annie,,Chang Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 29.68; Parameter Scan Time = 17:03:57; Parameter PMT Volts = 730; Parameter Scan Date = 2004-02-19; Parameter Pixel Size = 10; Parameter Laser on time = 62109; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82726]; Parameter Laser Power = 3.45; Parameter Scanning software version = 2.0.2.4; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Annie,,Chang


title: HelatTaCy5 vs BAT3sCy3

description:
Simple annotation: Apoptosis, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2004-02/48884.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1640, 4560; Parameter Datafile type = GenePix Results 2; Software: type: feature extraction; Performer: Annie,,Chang Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 22.97; Parameter Scan Time = 12:16:47; Parameter PMT Volts = 620; Parameter Scan Date = 2004-02-03; Parameter Pixel Size = 10; Parameter Laser on time = 29100; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82726]; Parameter Laser Power = 4.30; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.4; Parameter Scanning software = AxImageIO; Performer: Annie,,Chang Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 22.97; Parameter Scan Time = 12:16:47; Parameter PMT Volts = 710; Parameter Scan Date = 2004-02-03; Parameter Pixel Size = 10; Parameter Laser on time = 61323; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82726]; Parameter Laser Power = 3.27; Parameter Scanning software version = 2.0.2.4; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Annie,,Chang

source_name: HelatTa

tag: HelatTa


title: BAT3antiseneseCy3 BAT3 sense Cy5

description:
Simple annotation: Apoptosis, Profiling
Image: http://smd.stanford.edu/MicroArray/gifs/2004-02/48937.gif

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1560, 4960; Parameter Datafile type = GenePix Results 2; Software: type: feature extraction; Performer: Annie,,Chang Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 26.60; Parameter Scan Time = 17:03:01; Parameter PMT Volts = 620; Parameter Scan Date = 2004-02-01; Parameter Pixel Size = 10; Parameter Laser on time = 29015; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82726]; Parameter Laser Power = 4.27; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.4; Parameter Scanning software = AxImageIO; Performer: Annie,,Chang Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 26.60; Parameter Scan Time = 17:03:01; Parameter PMT Volts = 640; Parameter Scan Date = 2004-02-01; Parameter Pixel Size = 10; Parameter Laser on time = 61239; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [82726]; Parameter Laser Power = 3.37; Parameter Scanning software version = 2.0.2.4; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Annie,,Chang

source_name: BAT3 antisense

tag: BAT3 antisense

source_name: BAT3 sense

tag: BAT3 sense