title: KD1542 5d A R

description:
Phenotype: Patient responded (R) or not (NR) to IVIG therapy. Some patients were not classified because they were treated more than 10 days after onset of fever
Image: http://smd.stanford.edu/MicroArray/gifs/2004-07/53982.gif
Measurement: time(relative) 5 d
Individual: KD1542
Phenotype: R

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1080, 5270; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.36; Parameter Scan Time = 18:33:41; Parameter PMT Volts = 520; Parameter Scan Date = 2004-07-14; Parameter Pixel Size = 10; Parameter Laser on time = 181692; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.06; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.36; Parameter Scan Time = 18:33:41; Parameter PMT Volts = 650; Parameter Scan Date = 2004-07-14; Parameter Pixel Size = 10; Parameter Laser on time = 400661; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.72; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper


title: KD3020 6d N R

status: Public on Dec 13 2007

type: RNA

city: Stanford

first: Stephen

last: Popper

state: CA

department: Division of Infectious Diseases, Dept. of Medicine

country: USA

institute: Stanford University

description:
Phenotype: Patient responded (R) or not (NR) to IVIG therapy. Some patients were not classified because they were treated more than 10 days after onset of fever
Image: http://smd.stanford.edu/MicroArray/gifs/2004-07/53555.gif
Measurement: time(relative) 6 d
Individual: KD3020
Phenotype: R

hyb_protocol: not provided

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 860, 5240; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.92; Parameter Scan Time = 17:51:55; Parameter PMT Volts = 550; Parameter Scan Date = 2004-07-07; Parameter Pixel Size = 10; Parameter Laser on time = 178108; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.73; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.92; Parameter Scan Time = 17:51:55; Parameter PMT Volts = 710; Parameter Scan Date = 2004-07-07; Parameter Pixel Size = 10; Parameter Laser on time = 397076; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.69; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

data_processing: VALUE is Log (base 2) of the ratio of the median of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

molecule: total RNA

organism: Homo sapiens

source_name: Stratagene Universal Human Ref, amplified along with samples 061604 and pooled

label_protocol: not provided

extract_protocol: not provided

tag: Simple annotation

value: Infection, Whole blood

tag: Measurement

value: time(relative) 6 d

tag: Individual

tag: Phenotype

value: R


title: KD1505 A   6d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40545.gif
Disease State: A
Individual: KD1505

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 940, 5930; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.43; Parameter Scan Time = 10:17:56; Parameter PMT Volts = 500; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 93902; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.28; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.43; Parameter Scan Time = 10:17:56; Parameter PMT Volts = 660; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 459011; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.34; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: Stratagene Universal Human Reference RNA, 1st rnd amp AW 11/01/01, 3ug

tag: Disease State

value: A

source_name: KD 1505 11.6.02 Paxgene Ambion amp 4ug


title: KD3068 7d D R

description:
Phenotype: Patient responded (R) or not (NR) to IVIG therapy. Some patients were not classified because they were treated more than 10 days after onset of fever
Image: http://smd.stanford.edu/MicroArray/gifs/2004-07/53801.gif
Measurement: time(relative) 7 d
Individual: KD3068
Phenotype: R

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 980, 5130; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.00; Parameter Scan Time = 20:45:38; Parameter PMT Volts = 570; Parameter Scan Date = 2004-07-11; Parameter Pixel Size = 10; Parameter Laser on time = 180219; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.63; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.00; Parameter Scan Time = 20:45:38; Parameter PMT Volts = 740; Parameter Scan Date = 2004-07-11; Parameter Pixel Size = 10; Parameter Laser on time = 399188; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.70; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

value: time(relative) 7 d


title: KD3110 4d D R

description:
Phenotype: Patient responded (R) or not (NR) to IVIG therapy. Some patients were not classified because they were treated more than 10 days after onset of fever
Image: http://smd.stanford.edu/MicroArray/gifs/2004-07/53980.gif
Measurement: time(relative) 4 d
Individual: KD3110
Phenotype: R

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1080, 5270; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.48; Parameter Scan Time = 18:46:43; Parameter PMT Volts = 550; Parameter Scan Date = 2004-07-14; Parameter Pixel Size = 10; Parameter Laser on time = 181705; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.93; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.48; Parameter Scan Time = 18:46:43; Parameter PMT Volts = 650; Parameter Scan Date = 2004-07-14; Parameter Pixel Size = 10; Parameter Laser on time = 400673; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.72; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

value: time(relative) 4 d


title: KD1517 6d A R

description:
Phenotype: Patient responded (R) or not (NR) to IVIG therapy. Some patients were not classified because they were treated more than 10 days after onset of fever
Image: http://smd.stanford.edu/MicroArray/gifs/2004-07/53554.gif
Measurement: time(relative) 6 d
Individual: KD1517
Phenotype: R

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1200, 5240; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.74; Parameter Scan Time = 14:25:13; Parameter PMT Volts = 580; Parameter Scan Date = 2004-07-07; Parameter Pixel Size = 10; Parameter Laser on time = 177903; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.40; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.74; Parameter Scan Time = 14:25:13; Parameter PMT Volts = 730; Parameter Scan Date = 2004-07-07; Parameter Pixel Size = 10; Parameter Laser on time = 396872; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.70; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper


title: KD3106 6d D R

description:
Phenotype: Patient responded (R) or not (NR) to IVIG therapy. Some patients were not classified because they were treated more than 10 days after onset of fever
Image: http://smd.stanford.edu/MicroArray/gifs/2004-07/53986.gif
Measurement: time(relative) 6 d
Individual: KD3106
Phenotype: R

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1000, 5150; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.45; Parameter Scan Time = 10:05:24; Parameter PMT Volts = 500; Parameter Scan Date = 2004-07-14; Parameter Pixel Size = 10; Parameter Laser on time = 181495; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.02; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.45; Parameter Scan Time = 10:05:24; Parameter PMT Volts = 650; Parameter Scan Date = 2004-07-14; Parameter Pixel Size = 10; Parameter Laser on time = 400463; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.72; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper


title: KD3028 C   64d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40529.gif
Disease State: C
Individual: KD3028

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1340, 6650; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.05; Parameter Scan Time = 10:36:29; Parameter PMT Volts = 650; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 92970; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.35; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.05; Parameter Scan Time = 10:36:29; Parameter PMT Volts = 720; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 458079; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.28; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

value: C

source_name: KD 3028 63d Paxgene Ambion amp 4ug


title: KD3028 A   7d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40527.gif
Disease State: A
Individual: KD3028

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1580, 6090; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.97; Parameter Scan Time = 10:22:33; Parameter PMT Volts = 660; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 92955; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.35; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.97; Parameter Scan Time = 10:22:33; Parameter PMT Volts = 720; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 458064; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.28; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3028 6d Paxgene Ambion amp 4ug


title: KD3048 5d N R

description:
Phenotype: Patient responded (R) or not (NR) to IVIG therapy. Some patients were not classified because they were treated more than 10 days after onset of fever
Image: http://smd.stanford.edu/MicroArray/gifs/2004-07/53764.gif
Measurement: time(relative) 5 d
Individual: KD3048
Phenotype: R

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 940, 5270; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.82; Parameter Scan Time = 17:31:58; Parameter PMT Volts = 570; Parameter Scan Date = 2004-07-11; Parameter Pixel Size = 10; Parameter Laser on time = 180025; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 3.25; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.2; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 31.82; Parameter Scan Time = 17:31:58; Parameter PMT Volts = 770; Parameter Scan Date = 2004-07-11; Parameter Pixel Size = 10; Parameter Laser on time = 398993; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000B [81971]; Parameter Laser Power = 2.72; Parameter Scanning software version = 2.0.2.2; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

value: time(relative) 5 d


title: KD1506 SA 17d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40560.gif
Measurement: time(relative) 17 d
Individual: KD1506

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1040, 6300; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.16; Parameter Scan Time = 11:29:05; Parameter PMT Volts = 600; Parameter Scan Date = 2003-05-06; Parameter Pixel Size = 10; Parameter Laser on time = 94704; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.43; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.16; Parameter Scan Time = 11:29:05; Parameter PMT Volts = 720; Parameter Scan Date = 2003-05-06; Parameter Pixel Size = 10; Parameter Laser on time = 459813; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.29; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

value: time(relative) 17 d

source_name: KD 1506 12.19.02 Paxgene Ambion amp 4ug


title: KD3064 SA 20d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40509.gif
Disease State: SA
Individual: KD3064

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1020, 6320; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.10; Parameter Scan Time = 09:06:29; Parameter PMT Volts = 580; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 93831; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.33; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.10; Parameter Scan Time = 09:06:29; Parameter PMT Volts = 760; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 458939; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.29; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

value: SA

source_name: KD 3064 19d Paxgene Ambion amp 4ug


title: KD3007 SA 21d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40474.gif
Disease State: SA
Individual: KD3007

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1280, 6260; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.13; Parameter Scan Time = 10:47:39; Parameter PMT Volts = 610; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 92328; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.36; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.13; Parameter Scan Time = 10:47:39; Parameter PMT Volts = 810; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 457436; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.25; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3007 20d Paxgene Ambion amp 4ug


title: KD3019 A   8d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40455.gif
Disease State: A
Individual: KD3019

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1280, 5840; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.23; Parameter Scan Time = 08:49:45; Parameter PMT Volts = 520; Parameter Scan Date = 2003-04-25; Parameter Pixel Size = 10; Parameter Laser on time = 91478; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.38; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.23; Parameter Scan Time = 08:49:45; Parameter PMT Volts = 650; Parameter Scan Date = 2003-04-25; Parameter Pixel Size = 10; Parameter Laser on time = 456587; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.16; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3019 8d Paxgene Ambion amp 4ug


title: KD3064 A   5d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40508.gif
Disease State: A
Individual: KD3064

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1020, 6320; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.03; Parameter Scan Time = 08:54:36; Parameter PMT Volts = 580; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 93818; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.44; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.03; Parameter Scan Time = 08:54:36; Parameter PMT Volts = 760; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 458927; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.29; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3064 4d Paxgene Ambion amp 4ug


title: KD3027 C   48d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40526.gif
Disease State: C
Individual: KD3027

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1580, 6370; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.82; Parameter Scan Time = 10:04:50; Parameter PMT Volts = 680; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 92937; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.35; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.82; Parameter Scan Time = 10:04:50; Parameter PMT Volts = 730; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 458046; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.23; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3027 47d Paxgene Ambion amp 4ug


title: KD3004 1YR 394d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40470.gif
Measurement: time(relative) 394 d
Individual: KD3004

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1360, 6470; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.81; Parameter Scan Time = 10:01:02; Parameter PMT Volts = 620; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 92282; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.36; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.81; Parameter Scan Time = 10:01:02; Parameter PMT Volts = 760; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 457391; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.21; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

value: time(relative) 394 d

source_name: KD 3004 394d Paxgene Ambion amp 4ug


title: KD3027 A   6d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40523.gif
Measurement: time(relative) 6 d
Individual: KD3027

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1570, 6240; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.16; Parameter Scan Time = 15:35:33; Parameter PMT Volts = 690; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 93268; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.20; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.16; Parameter Scan Time = 15:35:33; Parameter PMT Volts = 780; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 458377; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.41; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3027 5d Paxgene Ambion amp 4ug


title: KD3059 C   39d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40507.gif
Measurement: time(relative) 39 d
Individual: KD3059

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1020, 6320; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.92; Parameter Scan Time = 08:42:59; Parameter PMT Volts = 590; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 93807; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.44; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.92; Parameter Scan Time = 08:42:59; Parameter PMT Volts = 690; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 458916; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.28; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

value: time(relative) 39 d

source_name: KD 3059 38d Paxgene Ambion amp 4ug


title: KD3059 SA 18d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40506.gif
Disease State: SA
Individual: KD3059

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1020, 6320; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.86; Parameter Scan Time = 08:30:46; Parameter PMT Volts = 590; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 93795; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.45; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.86; Parameter Scan Time = 08:30:46; Parameter PMT Volts = 690; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 458904; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.24; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3059 17d Paxgene Ambion amp 4ug


title: KD1506 A   9d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40559.gif
Disease State: A
Individual: KD1506

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1040, 6300; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.00; Parameter Scan Time = 11:12:06; Parameter PMT Volts = 600; Parameter Scan Date = 2003-05-06; Parameter Pixel Size = 10; Parameter Laser on time = 94687; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.44; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.00; Parameter Scan Time = 11:12:06; Parameter PMT Volts = 720; Parameter Scan Date = 2003-05-06; Parameter Pixel Size = 10; Parameter Laser on time = 459796; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.30; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 1506 12.11.02 Paxgene Ambion amp 4ug


title: KD3059 A   4d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40505.gif
Measurement: time(relative) 4 d
Individual: KD3059

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 710, 6320; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.80; Parameter Scan Time = 08:18:06; Parameter PMT Volts = 590; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 93783; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.46; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.80; Parameter Scan Time = 08:18:06; Parameter PMT Volts = 690; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 458891; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.21; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3059 3d Paxgene Ambion amp 4ug


title: KD3058 C   41d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40504.gif
Disease State: C
Individual: KD3058

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1320, 6320; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.54; Parameter Scan Time = 07:42:52; Parameter PMT Volts = 590; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 93747; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.48; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.54; Parameter Scan Time = 07:42:52; Parameter PMT Volts = 690; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 458856; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.15; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3058 40d Paxgene Ambion amp 4ug


title: KD3058 SA 13d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40503.gif
Measurement: time(relative) 13 d
Individual: KD3058

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 710, 6320; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.70; Parameter Scan Time = 08:00:44; Parameter PMT Volts = 590; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 93765; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.46; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.70; Parameter Scan Time = 08:00:44; Parameter PMT Volts = 690; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 458874; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.16; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: Stratagene Universal Human Reference RNA, 1st rnd amp AW 11/01/01, 3ug

value: time(relative) 13 d

source_name: KD 3058 12d Paxgene Ambion amp 4ug


title: KD3049 C   53d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40466.gif
Disease State: C
Individual: KD3049

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1280, 6570; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.32; Parameter Scan Time = 11:18:42; Parameter PMT Volts = 600; Parameter Scan Date = 2003-04-25; Parameter Pixel Size = 10; Parameter Laser on time = 91626; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.34; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.32; Parameter Scan Time = 11:18:42; Parameter PMT Volts = 750; Parameter Scan Date = 2003-04-25; Parameter Pixel Size = 10; Parameter Laser on time = 456735; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.22; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3049 52d Paxgene Ambion amp 4ug


title: KD3058 A   5d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40502.gif
Measurement: time(relative) 5 d
Individual: KD3058

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1320, 6320; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.32; Parameter Scan Time = 07:25:28; Parameter PMT Volts = 600; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 93730; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.48; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.32; Parameter Scan Time = 07:25:28; Parameter PMT Volts = 690; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 458839; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.12; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3058 4d Paxgene Ambion amp 4ug


title: KD3004 A   4d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40467.gif
Disease State: A
Individual: KD3004

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1280, 6400; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.31; Parameter Scan Time = 09:03:15; Parameter PMT Volts = 620; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 92224; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.42; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.31; Parameter Scan Time = 09:03:15; Parameter PMT Volts = 730; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 457333; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.17; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3004 3d Paxgene Ambion amp 4ug


title: KD3004 C   58d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40469.gif
Disease State: C
Individual: KD3004

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1360, 6470; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.62; Parameter Scan Time = 09:40:50; Parameter PMT Volts = 630; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 92261; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.36; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.62; Parameter Scan Time = 09:40:50; Parameter PMT Volts = 720; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 457369; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.18; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3004 57d Paxgene Ambion amp 4ug


title: KD3016 SA 18d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40482.gif
Disease State: SA
Individual: KD3016

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 920, 6890; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.65; Parameter Scan Time = 12:53:42; Parameter PMT Volts = 640; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 92454; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.27; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.65; Parameter Scan Time = 12:53:42; Parameter PMT Volts = 780; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 457563; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.45; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3016 18d Paxgene Ambion amp 4ug


title: KD3049 A   4d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40464.gif
Disease State: A
Individual: KD3049

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1280, 6570; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.19; Parameter Scan Time = 10:47:35; Parameter PMT Volts = 610; Parameter Scan Date = 2003-04-25; Parameter Pixel Size = 10; Parameter Laser on time = 91595; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.44; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.19; Parameter Scan Time = 10:47:35; Parameter PMT Volts = 790; Parameter Scan Date = 2003-04-25; Parameter Pixel Size = 10; Parameter Laser on time = 456704; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.23; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3049 3d Paxgene Ambion amp 4ug


title: KD3016 A   7d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40481.gif
Measurement: time(relative) 7 d
Individual: KD3016

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1240, 6680; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.57; Parameter Scan Time = 12:32:36; Parameter PMT Volts = 630; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 92433; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.30; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.57; Parameter Scan Time = 12:32:36; Parameter PMT Volts = 770; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 457541; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.44; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3016 7d Paxgene Ambion amp 4ug


title: KD3049 SA 18d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40465.gif
Disease State: SA
Individual: KD3049

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1280, 6570; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.31; Parameter Scan Time = 11:06:33; Parameter PMT Volts = 620; Parameter Scan Date = 2003-04-25; Parameter Pixel Size = 10; Parameter Laser on time = 91614; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.34; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.31; Parameter Scan Time = 11:06:33; Parameter PMT Volts = 790; Parameter Scan Date = 2003-04-25; Parameter Pixel Size = 10; Parameter Laser on time = 456723; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.23; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3049 17d Paxgene Ambion amp 4ug


title: mdx mouse, male, age = 13 weeks

city: Leiden

first: Peter

last: 't Hoen

address: PO Box 9600

department: Center for Human and Clinical Genetics

country: Netherlands

institute: Leiden University Medical Center

description: Gene expression data from the gastrocnemius muscle from mdx (mutation in Dmd gene) mouse at the age of 13 weeks

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the Hewlett-Packard GeneArray Scanner

data_processing: Rosetta's default error model for Affymetrix

label: biotin

organism: Mus musculus

source_name: gastrocnemius muscle of male mdx mouse, age 13 weeks

label_protocol: cDNA was synthesized with SuperscriptII (Gibco) using T7-dT24 primers. Enzo kit was used for in vitro transcription to generate biotinylated cRNA

extract_protocol: After dissection and freezing in liquid nitrogen, extraction of total RNA was performed with Trizol and subsequent RNeasy purifcation according to the manufacturer's instructions


title: KD3046 C   52d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40463.gif
Disease State: C
Individual: KD3046

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1280, 5840; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.13; Parameter Scan Time = 10:34:29; Parameter PMT Volts = 600; Parameter Scan Date = 2003-04-25; Parameter Pixel Size = 10; Parameter Laser on time = 91583; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.44; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.13; Parameter Scan Time = 10:34:29; Parameter PMT Volts = 770; Parameter Scan Date = 2003-04-25; Parameter Pixel Size = 10; Parameter Laser on time = 456692; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.23; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3046 51d Paxgene Ambion amp 4ug


title: KD3004 SA 23d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40468.gif
Disease State: SA
Individual: KD3004

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1200, 6470; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.53; Parameter Scan Time = 09:26:14; Parameter PMT Volts = 570; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 92247; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.42; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.53; Parameter Scan Time = 09:26:14; Parameter PMT Volts = 740; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 457356; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.20; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3004 22d Paxgene Ambion amp 4ug


title: KD3037 SA 14d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40535.gif
Measurement: time(relative) 14 d
Individual: KD3037

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1360, 6760; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.49; Parameter Scan Time = 11:47:05; Parameter PMT Volts = 660; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 93040; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.31; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.49; Parameter Scan Time = 11:47:05; Parameter PMT Volts = 690; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 458149; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.34; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

value: time(relative) 14 d

source_name: KD 3037 13d Paxgene Ambion amp 4ug


title: KD3047 A   5d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40537.gif
Disease State: A
Individual: KD3047

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1440, 6480; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.68; Parameter Scan Time = 12:16:24; Parameter PMT Volts = 660; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 93069; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.29; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.68; Parameter Scan Time = 12:16:24; Parameter PMT Volts = 730; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 458178; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.37; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3047 4d Paxgene Ambion amp 4ug


title: KD3038 C   45d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40460.gif
Disease State: C
Individual: KD3038

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1280, 5840; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.83; Parameter Scan Time = 09:55:09; Parameter PMT Volts = 540; Parameter Scan Date = 2003-04-25; Parameter Pixel Size = 10; Parameter Laser on time = 91543; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.35; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.83; Parameter Scan Time = 09:55:09; Parameter PMT Volts = 710; Parameter Scan Date = 2003-04-25; Parameter Pixel Size = 10; Parameter Laser on time = 456651; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.21; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3038 44d Paxgene Ambion amp 4ug


title: KD3014 C   35d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40480.gif
Disease State: C
Individual: KD3014

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1240, 6330; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.52; Parameter Scan Time = 12:18:58; Parameter PMT Volts = 620; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 92419; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.32; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.52; Parameter Scan Time = 12:18:58; Parameter PMT Volts = 780; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 457528; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.43; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3014 35d Paxgene Ambion amp 4ug


title: KD3027 SA 20d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40524.gif
Disease State: SA
Individual: KD3027

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1580, 6440; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.55; Parameter Scan Time = 09:27:50; Parameter PMT Volts = 660; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 92901; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.37; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.55; Parameter Scan Time = 09:27:50; Parameter PMT Volts = 740; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 458009; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.19; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: Stratagene Universal Human Reference RNA, 1st rnd amp AW 11/01/01, 3ug

source_name: KD 3027 19d Paxgene Ambion amp 4ug


title: KD3037 C   46d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40536.gif
Measurement: time(relative) 46 d
Individual: KD3037

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1360, 6760; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.59; Parameter Scan Time = 12:01:27; Parameter PMT Volts = 670; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 93054; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.30; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.59; Parameter Scan Time = 12:01:27; Parameter PMT Volts = 740; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 458162; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.36; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

value: time(relative) 46 d

source_name: KD 3037 45d Paxgene Ambion amp 4ug


title: hDMD x mdx x utrn-/- mouse, male, age = 9 weeks

description: Gene expression data from the gastrocnemius muscle from mouse deficient for dystrophin and utrophin (mdx x utrn-/-) carrying the full-length hDMD transgene, age 9 weeks

source_name: gastrocnemius muscle of male hDMD x mdx x utrn-/- mouse, age 9 weeks


title: KD3046 SA 17d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40462.gif
Disease State: SA
Individual: KD3046

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1280, 5840; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.05; Parameter Scan Time = 10:22:28; Parameter PMT Volts = 590; Parameter Scan Date = 2003-04-25; Parameter Pixel Size = 10; Parameter Laser on time = 91571; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.45; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.05; Parameter Scan Time = 10:22:28; Parameter PMT Volts = 800; Parameter Scan Date = 2003-04-25; Parameter Pixel Size = 10; Parameter Laser on time = 456679; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.23; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3046 16d Paxgene Ambion amp 4ug


title: hDMD mouse, male, age = 11 weeks

description: Gene expression data from the gastrocnemius muscle from male mouse containing the full-length hDMD gene, age 11 weeks

source_name: gastrocnemius muscle of male hDMD mouse, age 11 weeks


title: hDMD x mdx mouse, male, age = 10 weeks

description: Gene expression data from the gastrocnemius muscle from mdx (mutation in Dmd gene) mice containing the full-length hDMD gene at the age of 10 weeks

source_name: gastrocnemius muscle of male hDMD x mdx mouse, age 10 weeks


title: mdx mouse, male, age = 15 weeks

description: Gene expression data from the gastrocnemius muscle from mdx (mutation in Dmd gene) mouse at the age of 15 weeks

source_name: gastrocnemius muscle of male mdx mouse, age 15 weeks


title: KD3047 SA 21d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40539.gif
Measurement: time(relative) 21 d
Individual: KD3047

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1280, 6690; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.76; Parameter Scan Time = 12:35:38; Parameter PMT Volts = 620; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 93088; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.27; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.76; Parameter Scan Time = 12:35:38; Parameter PMT Volts = 880; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 458197; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.37; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

value: time(relative) 21 d

source_name: KD 3047 20d Paxgene Ambion amp 4ug


title: KD3016 C   36d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40516.gif
Disease State: C
Individual: KD3016

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1060, 6610; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.76; Parameter Scan Time = 13:31:15; Parameter PMT Volts = 590; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 92492; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.26; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.76; Parameter Scan Time = 13:31:15; Parameter PMT Volts = 800; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 457601; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.49; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3016 36d Paxgene Ambion amp 4ug


title: Day  238 cessation control 8

status: Public on Dec 11 2007

city: Horsham

first: Christopher

middle: S

last: Stevenson

address: Wimblehurst Road

department: Respiratory Diseases

country: United Kingdom

institute: Novartis Institutes for BioMedical Research

description: rat lung, day238, cess ctrl

hyb_protocol: Standard Affymetrix protocol

scan_protocol: Standard Affymetrix protocol

data_processing: The data was analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling of as normalization method. The trimmed mean target intensity of each array was set to 150.

organism: Rattus norvegicus

source_name: rat lung, day238, cess ctrl

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturers instructions.

tag: Strain

value: SD

tag: Gender

value: Male

tag: Tissue

value: Lung


title: Day 238 smoke exposure 8

description: rat lung, day238, smoke

source_name: rat lung, day238, smoke


title: hDMD x mdx mouse, male, age = 24 weeks

description: Gene expression data from the gastrocnemius muscle from mdx (mutation in Dmd gene) mice containing the full-length hDMD gene at the age of 24 weeks

source_name: gastrocnemius muscle of male hDMD x mdx mouse, age 24 weeks


title: KD3033 A   5d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40530.gif
Disease State: A
Individual: KD3033

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1340, 6510; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.16; Parameter Scan Time = 10:52:04; Parameter PMT Volts = 650; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 92985; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.43; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.16; Parameter Scan Time = 10:52:04; Parameter PMT Volts = 700; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 458094; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.27; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

value: Infection, Whole blood

source_name: KD 3033 4d Paxgene Ambion amp 4ug


title: wild-type mouse, female, age = 7 weeks

description: Gene expression data from the gastrocnemius muscle from female wild-type C57Bl/DBA2/129OLA-Ev mouse, age = 7 weeks

source_name: gastrocnemius muscle of female wild-type C57Bl/DBA2/129OLA-Ev mouse, age 7 weeks


title: mdx x utrn-/- mouse, male, age = 5 weeks

description: Gene expression data from the gastrocnemius muscle from mouse deficient for dystrophin and utrophin (mdx x utrn-/-) at the age of 5 weeks

source_name: gastrocnemius muscle of male mdx x utrn-/- mouse, age 5 weeks


title: wild-type mouse, male, age = 7 weeks

description: Gene expression data from the gastrocnemius muscle from male wild-type C57Bl/DBA2/129OLA-Ev mouse, age = 7 weeks

source_name: gastrocnemius muscle of male wild-type C57Bl/DBA2/129OLA-Ev mouse, age 7 weeks


title: KD1502 C   57d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40514.gif
Disease State: C
Individual: KD1502

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 940, 5930; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.38; Parameter Scan Time = 10:06:21; Parameter PMT Volts = 500; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 93890; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.30; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.38; Parameter Scan Time = 10:06:21; Parameter PMT Volts = 670; Parameter Scan Date = 2003-05-02; Parameter Pixel Size = 10; Parameter Laser on time = 458999; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.32; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: Stratagene Universal Human Reference RNA, 1st rnd amp AW 11/01/01, 3ug

source_name: KD 1502 12.2.02 Paxgene Ambion amp 4ug


title: KD3037 A   6d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40533.gif
Measurement: time(relative) 6 d
Individual: KD3037

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1360, 6550; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.43; Parameter Scan Time = 11:32:48; Parameter PMT Volts = 650; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 93026; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.32; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.43; Parameter Scan Time = 11:32:48; Parameter PMT Volts = 690; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 458134; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.30; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

value: time(relative) 6 d

source_name: KD 3037 5d Paxgene Ambion amp 4ug


title: KD3016 SA 23d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40515.gif
Disease State: SA
Individual: KD3016

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1060, 6610; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.67; Parameter Scan Time = 13:06:58; Parameter PMT Volts = 630; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 92467; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.26; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.67; Parameter Scan Time = 13:06:58; Parameter PMT Volts = 780; Parameter Scan Date = 2003-04-30; Parameter Pixel Size = 10; Parameter Laser on time = 457576; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.45; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

source_name: KD 3016 23d Paxgene Ambion amp 4ug


title: Day 238 smoke exposure 5

description: rat lung, day238, smoke


title: Day 238 smoke exposure 7

description: rat lung, day238, smoke


title: KD3033 C   43d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40532.gif
Measurement: time(relative) 43 d
Individual: KD3033

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1420, 6510; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.34; Parameter Scan Time = 11:19:32; Parameter PMT Volts = 650; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 93012; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.33; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.34; Parameter Scan Time = 11:19:32; Parameter PMT Volts = 680; Parameter Scan Date = 2003-05-01; Parameter Pixel Size = 10; Parameter Laser on time = 458121; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.28; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

value: time(relative) 43 d

source_name: KD 3033 42d Paxgene Ambion amp 4ug


title: Day  238 control 7

description: rat lung, day238, ctrl

source_name: rat lung, day238, ctrl


title: Day 238 smoke exposure 6

description: rat lung, day238, smoke


title: Day 238 smoke exposure 2

description: rat lung, day238, smoke


title: Day  238 control 6

description: rat lung, day238, ctrl


title: Day 238 smoke exposure 4

description: rat lung, day238, smoke


title: Day  238 control 8

description: rat lung, day238, ctrl


title: Day 238 smoke exposure 1

description: rat lung, day238, smoke


title: Day 238 smoke exposure 3

description: rat lung, day238, smoke


title: Day  238 control 5

description: rat lung, day238, ctrl


title: KD3046 A   7d

description:
Whole blood RNA (PAXgene tubes) was collected from 20 Kawasaki patients during the acute, sub-acute (post-IVIG treatment) and convalescent phases of the disease
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/40461.gif
Disease State: A
Individual: KD3046

scan_protocol: Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1280, 5840; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Stephen,,Popper Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.92; Parameter Scan Time = 10:09:18; Parameter PMT Volts = 590; Parameter Scan Date = 2003-04-25; Parameter Pixel Size = 10; Parameter Laser on time = 91557; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 1.45; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.2.3; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.92; Parameter Scan Time = 10:09:18; Parameter PMT Volts = 750; Parameter Scan Date = 2003-04-25; Parameter Pixel Size = 10; Parameter Laser on time = 456666; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47263]; Parameter Laser Power = 2.23; Parameter Scanning software version = 2.0.2.3; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Stephen,,Popper

value: A

source_name: KD 3046 6d Paxgene Ambion amp 4ug


title: Day 238 cessation smoke exposure 5

description: rat lung, day238, cess smoke

source_name: rat lung, day238, cess smoke