title: L199

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-05/68227.gif
Cell Line: L199
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: HCC1171_RNA

status: Public on Mar 01 2008

type: RNA

city: Stanford

first: Jonathan

last: Pollack

state: CA

address: 269 Campus Drive, CCSR3245A

department: Pathology

country: USA

institute: Stanford University

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-02/24850.gif
Cell Line: HCC1171

hyb_protocol: not provided

scan_protocol: not provided

data_processing: VALUE is Log (base 2) of the ratio of the median of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

molecule: total RNA

organism: Homo sapiens

source_name: Common reference, CRH

label_protocol: not provided

extract_protocol: not provided

tag: Common reference, CRH


title: HCC78_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24837.gif
Cell Line: HCC78


title: H1355

type: genomic

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62447.gif
Cell Line: H1355
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

molecule: genomic DNA

source_name: Normal male human genomic DNA

tag: Normal male human genomic DNA


title: HBEC2-E

description:
Simple annotation: aCGH, aCGH cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2004-02/49594.gif
Cell Line: HBEC2-E
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

source_name: Normal human male genomic DNA

tag: Normal human male genomic DNA

source_name: HBEC2-E; immortalized (8646)

tag: HBEC2-E; immortalized (8646)


title: HBEC3-KT

description:
Simple annotation: aCGH, aCGH cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2004-02/49596.gif
Cell Line: HBEC3-KT
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

source_name: HBEC3-KT; immortalized (8642)

tag: HBEC3-KT; immortalized (8642)


title: HBEC3-UI

description:
Simple annotation: aCGH, aCGH cell line
Image: http://smd.stanford.edu/MicroArray/gifs/2004-02/49591.gif
Cell Line: HBEC3-UI
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

source_name: Normal human female genomic DNA

tag: Normal human female genomic DNA

source_name: HBEC3-UI; non-immortal (8645)

tag: HBEC3-UI; non-immortal (8645)


title: H2887_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/27431.gif
Cell Line: H2887


title: HCC366_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/27434.gif
Cell Line: HCC366


title: HCC515_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/27436.gif
Cell Line: HCC515


title: H460_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2004-12/57851.gif
Cell Line: H460

source_name: Common Reference CRH

tag: Common Reference CRH


title: HCC15_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2004-12/57854.gif
Cell Line: HCC15


title: HCC193_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-02/24889.gif
Cell Line: HCC193


title: H2122_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24830.gif
Cell Line: H2122


title: H2126_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24831.gif
Cell Line: H2126


title: H1299_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/27412.gif
Cell Line: H1299


title: 00031076_532 normalized

city: Valbonne - Sophia-Antipolis

first: Kevin

last: Lebrigand

address: 660 route des lucioles

country: France

institute: IPMC/CNRS

hyb_protocol: Agilent : 750.0 ng at 60 degree_C during 17 hours

scan_protocol: Scanned on an GenePix 4000B fluorescent scanner. Image intensity data were extracted with GenePix Pro 6.0 analysis software.

data_processing: VALUE column is normalized 532 intensity

source_name: Control2 Label1

label_protocol: Ambion

extract_protocol: Chomzynski

tag: Labeling_reference:Control2 Label1

value: Control2 Ext1

tag: Tissue

value: Liver


title: H1155_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/27418.gif
Cell Line: H1155


title: 0031074_532 normalized

source_name: T15 Label1

tag: Labeling_reference:T15 Label1

value: T15 Ext1

tag: Origin

value: post transplantation biopsy

tag: Disease

value: AST:306 (group1) Suzuki score :3


title: 00031076_635 normalized

data_processing: VALUE column is normalized 635 intensity

source_name: T1 Label2

tag: Labeling_reference:T1 Label2

value: T1 Ext1

value: AST:2304 (group2) Suzuki score :7


title: 0031073_532 normalized

source_name: Control6 Label1

tag: Labeling_reference:Control6 Label1

value: Control6 Ext1


title: 00031075_532 normalized

source_name: Control4 Label1

tag: Labeling_reference:Control4 Label1

value: Control4 Ext1


title: 0031074_635 normalized

source_name: T9 Label2

tag: Labeling_reference:T9 Label2

value: T9 Ext1

value: AST:2271 (group2) Suzuki score :4


title: H1395_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/27415.gif
Cell Line: H1395

tag: Common reference, CRH


title: 0031073_635 normalized

source_name: T7 Label2

tag: Labeling_reference:T7 Label2

value: T7 Ext1

value: AST:3539 (group2) Suzuki score :4


title: 00031075_635 normalized

source_name: Control1 Label1

tag: Labeling_reference:Control1 Label1

value: Control1 Ext1


title: 0031072_635 normalized

source_name: Control2 Label5

tag: Labeling_reference:Control2 Label5


title: HCC1833_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/27446.gif
Cell Line: HCC1833

source_name: Common reference, CRH


title: 0031072_532 normalized

source_name: T16 Label1

tag: Labeling_reference:T16 Label1

value: T16 Ext1

value: AST:659 (group1) Suzuki score:4


title: 0031302_532 normalized

source_name: Control1 Label6

tag: Labeling_reference:Control1 Label6


title: 0031300_532 normalized

source_name: T20 Label1

tag: Labeling_reference:T20 Label1

value: T20 Ext1

value: AST:1304 (group1) Suzuki score :4


title: H2347_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/27428.gif
Cell Line: H2347


title: 0031301_532 normalized

source_name: T8 Label1

tag: Labeling_reference:T8 Label1

value: T8 Ext1

value: Liver

value: AST:574 (group1) Suzuki score :3


title: HCC95_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-02/24885.gif
Cell Line: HCC95


title: 0031300_635 normalized

source_name: Control2 Label6

tag: Labeling_reference:Control2 Label6

value: Control2 Ext1

value: patient


title: 0031262_532 normalized

source_name: Control1 Label5

tag: Labeling_reference:Control1 Label5

tag: Tissue


title: H157_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/27400.gif
Cell Line: H157


title: H1648_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24823.gif
Cell Line: H1648


title: HCC827_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/27440.gif
Cell Line: HCC827


title: 0031301_635 normalized

source_name: Control4 Label2

tag: Labeling_reference:Control4 Label2


title: 0031132_532 normalized

source_name: Control5 Label1

tag: Labeling_reference:Control5 Label1

value: Control5 Ext1


title: H2073_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24827.gif
Cell Line: H2073


title: 0031132_635 normalized

source_name: T18 Label2

tag: Labeling_reference:T18 Label2

value: T18 Ext1

tag: Origin

value: post transplantation biopsy

tag: Disease

value: AST:2037 (group2) Suzuki score :4


title: H2087_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24829.gif
Cell Line: H2087


title: H358_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/27402.gif
Cell Line: H358


title: 0031302_635 normalized

source_name: Control7 Label2

tag: Labeling_reference:Control7 Label2

value: Control7 Ext1


title: 0031262_635 normalized

source_name: T12 Label2

tag: Labeling_reference:T12 Label2

value: T12 Ext1

value: AST:630 (group1) Suzuki score :6


title: 00031134_532 normalized

source_name: Control2 Label4

tag: Labeling_reference:Control2 Label4


title: 00031135_635 normalized

source_name: Control1 Label4

tag: Labeling_reference:Control1 Label4

value: Control1 Ext1


title: 00031244_532 normalized

source_name: T13 Label1

tag: Labeling_reference:T13 Label1

value: T13 Ext1

value: AST:394 (group1) Suzuki score :3


title: HCC1359_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/27443.gif
Cell Line: HCC1359

tag: Common reference, CRH


title: H2009_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-01/24828.gif
Cell Line: H2009


title: 00031135_532 normalized

source_name: T1 Label1

tag: Labeling_reference:T1 Label1

value: T1 Ext1

value: AST:2304 (group2) Suzuki score :7


title: 00031243_635 normalized

source_name: Control3 Label2

tag: Labeling_reference:Control3 Label2

value: Control3 Ext1


title: 00031246_532 normalized

source_name: T3 Label1

tag: Labeling_reference:T3 Label1

value: T3 Ext1

value: Liver

value: AST:5788 (group2) Suzuki score :7


title: 00031243_532 normalized

source_name: T21 Label1

tag: Labeling_reference:T21 Label1

value: T21 Ext1

value: AST:1805 (group2) Suzuki score :6


title: 00031247_635 normalized

source_name: T14 Label2

tag: Labeling_reference:T14 Label2

value: T14 Ext1

value: AST:333 (group1) Suzuki score :7


title: 00031247_532 normalized

source_name: T11 Label1

tag: Labeling_reference:T11 Label1

value: T11 Ext1

tag: Tissue

value: post transplantation biopsy

value: AST:1676 (group2) Suzuki score :7


title: 00031103_635 normalized

source_name: T17 Label2

tag: Labeling_reference:T17 Label2

value: T17 Ext1

value: AST:1290 (group1) Suzuki score :4


title: 00031299_532 normalized

source_name: T7 Label1

tag: Labeling_reference:T7 Label1

value: T7 Ext1

value: AST:3539 (group2) Suzuki score :4


title: 00031106_532 normalized

source_name: Control3 Label1

tag: Labeling_reference:Control3 Label1


title: 00031299_635 normalized

source_name: T20 Label2

tag: Labeling_reference:T20 Label2

value: T20 Ext1

tag: Origin

tag: Disease

value: AST:1304 (group1) Suzuki score :4


title: 00031103_532 normalized

source_name: T4 Label1

tag: Labeling_reference:T4 Label1

value: T4 Ext1

value: AST:515 (group1) Suzuki score :1


title: 00031106_635 normalized

source_name: T15 Label2

tag: Labeling_reference:T15 Label2

value: T15 Ext1

value: Liver

value: AST:306 (group1) Suzuki score :3


title: 00031246_635 normalized

source_name: T6 Label2

tag: Labeling_reference:T6 Label2

value: T6 Ext1

value: AST:184 (group1) Suzuki score :3


title: 00031104_635 normalized

source_name: T5 Label2

tag: Labeling_reference:T5 Label2

value: T5 Ext1

value: AST:999 (group1) Suzuki score :2


title: 00031134_635 normalized

source_name: T19 Label2

tag: Labeling_reference:T19 Label2

value: T19 Ext1

value: post transplantation biopsy

value: AST:435 (group1) Suzuki score :2


title: 00031261_532 normalized

source_name: T18 Label1

tag: Labeling_reference:T18 Label1

value: T18 Ext1

value: AST:2037 (group2) Suzuki score :4


title: 00031261_635 normalized

source_name: Control6 Label2

tag: Labeling_reference:Control6 Label2

value: Control6 Ext1


title: 00031259_532 normalized

source_name: Control1 Label3

tag: Labeling_reference:Control1 Label3

value: Control1 Ext1


title: 00031260_532 normalized

source_name: T14 Label1

tag: Labeling_reference:T14 Label1

value: T14 Ext1

value: AST:333 (group1) Suzuki score :7


title: 00031258_532 normalized

source_name: T6 Label1

tag: Labeling_reference:T6 Label1


title: 00031258_635 normalized

source_name: T3 Label2

tag: Labeling_reference:T3 Label2

value: T3 Ext1

tag: Tissue

value: AST:5788 (group2) Suzuki score :7


title: 00031294_635 normalized

source_name: T13 Label2

tag: Labeling_reference:T13 Label2

value: T13 Ext1

value: Liver

value: AST:394 (group1) Suzuki score :3


title: 00031294_532 normalized

source_name: T2 Label1

tag: Labeling_reference:T2 Label1

value: T2 Ext1

value: AST:858 (group1) Suzuki score :0


title: 00031260_635 normalized

source_name: Control2 Label3

tag: Labeling_reference:Control2 Label3

value: Control2 Ext1


title: 00031244_635 normalized

source_name: T2 Label2

tag: Labeling_reference:T2 Label2

tag: Origin


title: 00031236_532 normalized

source_name: T9 Label1

tag: Labeling_reference:T9 Label1

value: T9 Ext1

tag: Disease

value: AST:2271 (group2) Suzuki score :4


title: 00031293_532 normalized

source_name: T19 Label1

tag: Labeling_reference:T19 Label1

value: T19 Ext1

value: post transplantation biopsy

value: AST:435 (group1) Suzuki score :2


title: 00031151_532 normalized

source_name: Control7 Label1

tag: Labeling_reference:Control7 Label1

value: Control7 Ext1


title: 00031236_635 normalized

source_name: T8 Label2

tag: Labeling_reference:T8 Label2

value: T8 Ext1

value: AST:574 (group1) Suzuki score :3


title: 00031235_635 normalized

source_name: T16 Label2

tag: Labeling_reference:T16 Label2

value: T16 Ext1

value: AST:659 (group1) Suzuki score:4


title: 00031151_635 normalized

source_name: T4 Label2

tag: Labeling_reference:T4 Label2

value: T4 Ext1

value: AST:515 (group1) Suzuki score :1


title: 00031234_635 normalized

source_name: Control1 Label1

tag: Labeling_reference:Control1 Label1

value: Control1 Ext1

value: Liver


title: 00031293_635 normalized

source_name: Control5 Label2

tag: Labeling_reference:Control5 Label2

value: Control5 Ext1


title: 00031235_532 normalized

source_name: Control2 Label2

tag: Labeling_reference:Control2 Label2


title: 00031234_532 normalized

source_name: T17 Label1

tag: Labeling_reference:T17 Label1

value: T17 Label1

value: AST:1290 (group1) Suzuki score :4


title: H28 ME_RNA (8115)

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/27391.gif
Cell Line: H28

source_name: Common reference, CRH

tag: Common reference, CRH

source_name: H28 ME_RNA

tag: H28 ME_RNA


title: 00031150_635 normalized

source_name: T10 Label2

tag: Labeling_reference:T10 Label2

value: T10 Ext1

tag: Tissue

value: AST:336 (group1) Suzuki score :5


title: 00031150_532 normalized

source_name: T5 Label1

tag: Labeling_reference:T5 Label1

value: T5 Ext1

value: AST:999 (group1) Suzuki score :2


title: 00031104_532 normalized

source_name: T10 Label1

tag: Labeling_reference:T10 Label1

tag: Origin

value: post transplantation biopsy


title: 00031259_635 normalized

source_name: T11 Label2

tag: Labeling_reference:T11 Label2

value: T11 Ext1

tag: Disease

value: AST:1676 (group2) Suzuki score :7


title: L156

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65919.gif
Cell Line: L156
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

source_name: Normal human female genomic DNA

tag: Normal human female genomic DNA


title: L187

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65916.gif
Cell Line: L187
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: HCC4006

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66352.gif
Cell Line: HCC4006
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

source_name: Normal human male genomic DNA

tag: Normal human male genomic DNA


title: HCC2279

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66359.gif
Cell Line: HCC2279
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: HCC2450

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38018.gif
Cell Line: HCC23450
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

source_name: Normal male genomic DNA

tag: Normal male genomic DNA


title: L147

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65912.gif
Cell Line: L147
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H441

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66357.gif
Cell Line: H441
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L237

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65911.gif
Cell Line: L237
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: CaLu-1

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66349.gif
Cell Line: CaLu-1
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

source_name: CaLu-1; NSCLC (GD154s1)

tag: CaLu-1; NSCLC (GD154s1)


title: L201

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-05/68225.gif
Cell Line: L201
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L180

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65918.gif
Cell Line: L180
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: HCC827

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38014.gif
Cell Line: HCC827
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

source_name: Normal female genomic DNA

tag: Normal female genomic DNA


title: L165

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65904.gif
Cell Line: L165
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H3122

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-10/64871.gif
Cell Line: H3122
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: HCC1195

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38017.gif
Cell Line: HCC1195
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: HCC2429

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66355.gif
Cell Line: HCC2429
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

source_name: HCC2429; NSCLC (GD3s1)

tag: HCC2429; NSCLC (GD3s1)


title: H1650

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66348.gif
Cell Line: H1650
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L213

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-05/68226.gif
Cell Line: L213
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: HCC1833

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38013.gif
Cell Line: HCC1833
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L137

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65907.gif
Cell Line: L137
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: HCC2935

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66350.gif
Cell Line: HCC2935
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

source_name: HCC2935; NSCLC (GD202s1)

tag: HCC2935; NSCLC (GD202s1)


title: L181

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65906.gif
Cell Line: L181
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L306

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65917.gif
Cell Line: L306
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: HCC1359

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38012.gif
Cell Line: HCC1359
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L218

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65905.gif
Cell Line: L218
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H1666

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-10/64655.gif
Cell Line: H1666
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H3255

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66354.gif
Cell Line: H3255
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L68

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65938.gif
Cell Line: L68
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: CaLu-6

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-10/64868.gif
Cell Line: CaLu-5
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

source_name: CaLu-6; NSCLC (GD159s1)

tag: CaLu-6; NSCLC (GD159s1)


title: H1781

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-10/64870.gif
Cell Line: H1781
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: HCC1171

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35825.gif
Cell Line: HCC1171
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: HCC78

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35821.gif
Cell Line: HCC78
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L50

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65934.gif
Cell Line: L50
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L204

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65909.gif
Cell Line: L204
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L299

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65931.gif
Cell Line: L299
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L234

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65930.gif
Cell Line: L234
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: HCC95

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35823.gif
Cell Line: HCC95
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H1299

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38000.gif
Cell Line: H1299
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H2126

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35824.gif
Cell Line: H2126
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: HCC461

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38004.gif
Cell Line: HCC461
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L191

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65921.gif
Cell Line: L191
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H1155

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38008.gif
Cell Line: H1155
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L157

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66448.gif
Cell Line: L157
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L319

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65924.gif
Cell Line: L319
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H2882

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35820.gif
Cell Line: H2882
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L69

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65929.gif
Cell Line: L69
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L265

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66446.gif
Cell Line: L265
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L313

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65922.gif
Cell Line: L313
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L143

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65928.gif
Cell Line: L143
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L54

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65926.gif
Cell Line: L54
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L132

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65927.gif
Cell Line: L132
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L219

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66447.gif
Cell Line: L219
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L320

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65925.gif
Cell Line: L320
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: HCC193

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35819.gif
Cell Line: HCC193
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H358

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38006.gif
Cell Line: H358
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: A549

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66362.gif
Cell Line: A549
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L178

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65923.gif
Cell Line: L178
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H1975

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66360.gif
Cell Line: H1975
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H2087

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35817.gif
Cell Line: H2087
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H2073

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35815.gif
Cell Line: H2073
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H23

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66366.gif
Cell Line: H23
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H1792

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66361.gif
Cell Line: H1792
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L226

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2005-12/65920.gif
Cell Line: L226
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: LC-NA1

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56163.gif
Cell Line: LC-NA1
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

source_name: LC-NA1; LC-NA1; SQ

tag: LC-NA1; LC-NA1; SQ


title: L323

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-05/68246.gif
Cell Line: L323
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L161

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-05/68247.gif
Cell Line: L161
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H1437

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66365.gif
Cell Line: H1437
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H2009

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35816.gif
Cell Line: H2009
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L246

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-05/68240.gif
Cell Line: L246
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L42

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-05/68237.gif
Cell Line: L42
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L80

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-05/68241.gif
Cell Line: L80
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H2122

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35818.gif
Cell Line: H2122
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L198

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-05/68243.gif
Cell Line: L198
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L238

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-05/68245.gif
Cell Line: L238
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L167

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-05/68242.gif
Cell Line: L167
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L173

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-05/68244.gif
Cell Line: L173
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L56

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-05/68239.gif
Cell Line: L56
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: HCC366

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37990.gif
Cell Line: HCC366
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L209

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56437.gif
Cell Line: L209
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L185

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-05/68236.gif
Cell Line: L185
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H157

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37995.gif
Cell Line: H157
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L285

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-05/68234.gif
Cell Line: L285
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L220

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-05/68235.gif
Cell Line: L220
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L214

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56436.gif
Cell Line: L214
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: HCC44

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38021.gif
Cell Line: HCC44
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H2347

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37988.gif
Cell Line: H2347
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L333

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56435.gif
Cell Line: L333
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L55

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56854.gif
Cell Line: L55
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H1395

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37986.gif
Cell Line: H1395
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: HCC515

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37991.gif
Cell Line: HCC515
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L217

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56434.gif
Cell Line: L217
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L195

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56351.gif
Cell Line: L195
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L170

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56853.gif
Cell Line: L170
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L316

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/38351.gif
Cell Line: L316
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

source_name: male normal lung DNA

tag: male normal lung DNA


title: L140

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56433.gif
Cell Line: L140
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L41

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38306.gif
Cell Line: L41
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L183

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38307.gif
Cell Line: L183
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L46

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56349.gif
Cell Line: L46
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H1819

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38020.gif
Cell Line: H1819
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: H2887

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37989.gif
Cell Line: H2887
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L203

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56855.gif
Cell Line: L203
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L210

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38339.gif
Cell Line: L210
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: LC-NA3

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56347.gif
Cell Line: LC-NA3
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

source_name: LC-NA3; LC-NA3; SQ

tag: LC-NA3; LC-NA3; SQ


title: L235

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/38546.gif
Cell Line: L235
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L49

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56267.gif
Cell Line: L49
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: 8032B-RBNC_0month

city: San Francisco

first: Scot

middle: M

last: Federman

address: 499 Illinois St

department: Biochemistry

institute: UCSF

description: 2006-10-11-StratRefvs8032B-RBNC-0-P17-225

hyb_protocol: Labeled cDNA was hybridized to a microarray slide at 63° C for 12-16 h.

scan_protocol: Slides were then washed and immediately scanned with Axon Imager 4000b (Axon Instruments, Foster City, Ca), using GenePixPro3 software.

data_processing: printTipLoess normalized, background subtracted VALUE data obtained from log2 of processed Red signal/processed Green signal. Experimental bias (hybridization batch) was removed by fitting linear models & taking residuals. Statistical packages marray and limma in the R environment was used.

source_name: human prostate collected at 0 months

label_protocol: One microgram of total target RNA from randomized samples, side by side with 1 µg of universal human reference RNA (Stratagene #740000), was linearly amplified through two rounds of modified in vitro transcription. Randomized amplified RNAs were converted to aminoallyl-modified cDNA and coupled to N-hydroxysuccinimidyl esters of Cy3 or Cy5 (Amersham Biosciences, Piscataway, NJ),

extract_protocol: A #10 scalpel blade was used to scrape tissue from the pathologic area of interest. Tissue was homogenized [Polytron 1200C, Brinkmann, Westbury, NY, at setting 4 for 30 sec] with 600µl of RNA lysis buffer plus 1% 2-mercaptoethanol, and RNA was isolated using RNEasy columns (Qiagen, Valencia, Ca).

treatment_protocol: Patients were prescribed a 3-month comprehensive lifestyle modification program in two stages. The first stage was a three day intensive residential retreat designed to immerse patients in the program and to discuss strategies and expectations for integrating the recommended changes into their daily routines. The second stage involved incorporation of the diet and lifestyle modifications into their daily lives. The lifestyle modifications included a low-fat (10% of calories from fat), whole foods, plant-based diet, stress management practices 60 minutes/day (gentle yoga-based stretching, breathing, meditation, imagery and progressive relaxation), moderate aerobic exercise (walking 30 minutes/day for 6 days/week), and a 1 hour group support session/week. To enhance adherence to the intervention, patients met once a week for four hours to participate in a 1 hour group support session, practice the stress management techniques, listen to lectures on prostate cancer and lifestyle changes, and eat a group meal prepared in accordance with intervention guidelines. The diet was supplemented with soy (1 daily serving of tofu plus 58 gm of a fortified soy protein powdered beverage), fish oil (3 gm daily), vitamin E (100 IU daily), selenium (200 mcg daily) and vitamin C (2 gm daily). The diet was predominantly fruits, vegetables, whole grains (complex carbohydrates), legumes and soy products, low in refined carbohydrates and with approximately 10% of calories from fat. In earlier studies, patients were able to adhere to this diet for 1-5 years. Participants were provided with all of their food (lunch and dinner entrées, supply of organic fruits and vegetables, breakfast and snack items). A registered dietitian, exercise physiologist, and stress management instructor were available for education and counseling. A nurse case manager contacted patients by telephone once a week. All therapeutic decisions, including whether to undergo conventional treatment during the study course, were deferred to the personal physician of each patient.

tag: Biopsy Location:RBN

tag: Biopsy Time:0-Month

source_name: Stratagene Reference RNA

tag: Sample:Stratagene Reference Pooled RNA


title: L257

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2006-05/68238.gif
Cell Line: L257
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L172

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/38344.gif
Cell Line: L172
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: 8032B-LMN_3month

description: 2006-11-20-StratRefvs8032B-LMN-3-P17-142

source_name: human prostate collected at 3 months

tag: Biopsy Location:LMN

tag: Biopsy Time:3-Month


title: HCC15

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-12/57853.gif
Cell Line: HCC15
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

source_name: HCC15; SQ

tag: HCC15; SQ


title: L193

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56164.gif
Cell Line: L193
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L52

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56266.gif
Cell Line: L52
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: 8031A-RBNC_3month

description: 2006-10-28-StratRefvs8031A-RBNC-3-P17-015


title: L174

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56265.gif
Cell Line: L174
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: 8031D-RBN_0month

description: 2006-11-16-StratRefvs8031D-RBN-0-P17-163


title: H460

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-12/57852.gif
Cell Line: H460
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L53

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56815.gif
Cell Line: L53
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L60

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38249.gif
Cell Line: L60
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L288

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38175.gif
Cell Line: L288
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L245

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38174.gif
Cell Line: L245
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: L247

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37950.gif
Cell Line: L247
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.


title: HCC461_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/38461.gif
Cell Line: HCC461

source_name: Common reference, CRH

tag: Common reference, CRH


title: BEAS-2B _RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/38463.gif
Cell Line: BEAS-2B


title: 8028B-LMNC_3month

description: 2006-10-20-StratRefvs8028B-LMNC-3-P17-233


title: 8030A-RAN_0month

description: 2006-11-18-StratRefvs8030A-RAN-0-P17-129

tag: Biopsy Location:RAN


title: 8029B-RAN_0month

description: 2006-10-28-StratRefvs8029B-RAN-0-P17-005


title: 8030B-RMN_3month

description: 2006-12-08-StratRefvs8030B-RMN-3-P18-087

tag: Biopsy Location:RMN


title: H1648

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2002-12/35813.gif
Cell Line: H1648
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

tag: Normal male genomic DNA


title: 8027C-LBN_3month

description: 2006-10-13-StratRefvs8027C-LBN-3-P17-238

tag: Biopsy Location:LBN


title: 8028B-LAN_0month

description: 2006-10-20-StratRefvs8028B-LAN-0-P17-054

tag: Biopsy Location:LAN


title: 8027A-LBN_0month

description: 2006-10-18-StratRefvs8027A-LBN-0-P17-057


title: HCC44_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/38462.gif
Cell Line: HCC44


title: 8026B-RAN_3month

description: 2006-10-11-StratRefvs8026B-RAN-3-P17-228


title: 8026B-RAN_0month

description: 2006-10-20-StratRefvs8026B-RAN-0-P17-069


title: HCC1195_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/38477.gif
Cell Line: HCC1195


title: 8024C-LMN_3month

description: 2006-11-29-StratRefvs8024C-LMN-3-P18-051


title: 8024D-RAN_0month

description: 2006-10-18-StratRefvs8024D-RAN-0-P17-060


title: 8023B-RMN_0month

description: 2006-10-20-StratRefvs8023B-RMN-0-P17-084


title: H2052 ME_RNA (8364)

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/38476.gif
Cell Line: H2052


title: SAEC_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/38475.gif
Cell Line: SAEC


title: 8023B-RAN_3month

description: 2006-10-28-StratRefvs8023B-RAN-3-P17-197


title: 8022C-RAN_0Amonth

description: 2006-12-08-StratRefvs8022C-RAN-0A-P18-078


title: 8029B-RAN_3month

description: 2006-10-28-StratRefvs8029B-RAN-3-P17-199


title: HCC2450_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/38478.gif
Cell Line: HCC2450


title: 8021B-LMN_3month

description: 2006-10-18-StratRefvs8021B-LMN-3-P17-061


title: HBEC5-UI_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/38474.gif
Cell Line: HBEC5-UI

source_name: HBEC5-UI (NHBEC) (8368)

tag: HBEC5-UI (NHBEC) (8368)


title: 8019C-LMNC_3Amonth

description: 2006-11-29-StratRefvs8019C-LMNC-3A-P18-050


title: 8022A-RANC_3Amonth

description: 2006-11-29-StratRefvs8022A-RANC-3A-P18-030


title: 8019A-LMN_0Amonth

description: 2006-10-20-StratRefvs8019A-LMN-0A-P17-235


title: H1819_RNA

description:
NHBEC, SAEC and BEAS-2B are Normal lung epithelial cell lines, the others are Lung cancer cell lines
Image: http://smd.stanford.edu/MicroArray/gifs/2003-03/38473.gif
Cell Line: H1819


title: 8020B-RBN_0Bmonth

description: 2006-11-08-StratRefvs8020B-RBN-0B-P17-167


title: 8021C-RAN_0month

description: 2006-10-18-StratRefvs8021C-RAN-0-P17-051


title: 8017D-LMN_3month

description: 2006-10-28-StratRefvs8017D-LMN-3-P17-196


title: 8015B-RAN_0month

description: 2006-10-03-StratRefvs8015B-RAN-0-p17-062


title: 8018A-LBN_3month

description: 2006-10-20-StratRefvs8018A-LBN-3-P17-259


title: 8018D-LBN_0month

description: 2006-10-20-StratRefvs8018D-LBN-0-P17-068


title: 8016B-LAN_3Amonth

description: 2006-11-29-StratRefvs8016B-LAN-3A-P18-055


title: 8016D-RAN_0month

description: 2006-11-20-StratRefvs8016D-RAN-0-P17-140


title: 8017D-LMN_0Bmonth

description: 2006-10-03-StratRefvs8017D-LMN-0B-P17-205


title: 8015B-LMN_3Bmonth

description: 2006-10-13-StratRefvs8015B-LMN-3B-P17-244


title: 8010D-RAN_0month

description: 2006-10-28-StratRefvs8010D-RAN-0-P17-008


title: 8012D-RMN_3month

description: 2006-11-18-StratRefvs8012D-RMN-3-P17-154


title: 8009A-LMN_3month

description: 2006-10-28-StratRefvs8009A-LMN-3-P17-018


title: 8014D-LMN_3month

description: 2006-10-28-StratRefvs8014D-LMN-3-P17-010


title: 8013A-LBN_0month

description: 2006-11-08-StratRefvs8013A-LBN-0-P17-104


title: 8013C-LMN_3Bmonth

description: 2006-10-11-StratRefvs8013C-LMN-3B-P17-226


title: 8012D-RMN_0month

description: 2006-10-13-StratRefvs8012D-RMN-0-P17-033


title: 8010B-RAN_3month

description: 2006-10-20-StratRefvs8010B-RAN-3-P17-254


title: 8020D-LBN_3month

description: 2006-11-08-StratRefvs8020D-LBN-3-P17-149


title: 8007D-LAN_0month

description: 2006-10-28-StratRefvs8007D-LAN-0-P17-014


title: 8008D-LAN_3month

description: 2006-10-28-StratRefvs8008D-LAN-3-P17-017


title: 8014D-LBN_0Bmonth

description: 2006-10-11-StratRefvs8014D-LBN-0B-P17-222


title: 8005B-RBN_0month

description: 2006-10-03-StratRefvs8005B-RBN-0-p17-001


title: 8009A-LMN_0Amonth

description: 2006-10-18-StratRefvs8009A-LMN-0A-P17-052


title: 8006C-RMN_0month

description: 2006-10-28-StratRefvs8006C-RMN-0-P17-007


title: 8008C-RBN_0Bmonth

description: 2006-10-11-StratRefvs8008C-RBN-0B-P17-256


title: 8007D-LBN_3month

description: 2006-11-16-StratRefvs8007D-LBN-3-P17-161


title: 8006D-LAN_3month

description: 2006-10-20-StratRefvs8006D-LAN-3-P17-236


title: 8004A-LAN_3Amonth

description: 2006-10-20-StratRefvs8004A-LAN-3A-P17-066


title: 8002A-RAN_3month

description: 2006-10-03-StratRefvs8002A-RAN-3-P17-258


title: 8005B-RBN_3Bmonth

description: 2006-11-29-StratRefvs8005B-RBN-3B-P18-057


title: 8002A-RAN_0Amonth

description: 2006-11-29-StratRefvs8002A-RAN-0A-P18-056


title: 8004A-LAN_0Amonth

description: 2006-11-18-StratRefvs8004A-LAN-0A-P17-155


title: 8001B-RAN_0month

description: 2006-10-11-StratRefvs8001B-RAN-0-P17-223


title: 8003B-LAN_3Bmonth

description: 2006-10-11-StratRefvs8003B-LAN-3B-P17-229


title: 8003C-RMN_0month

description: 2006-10-28-StratRefvs8003C-RMN-0-P17-006


title: ZM_8d_SG200_3Alu_III

city: Karlsruhe

first: Jörg

middle: Thomas

last: Kämper

address: Hertzstrasse 16, Geb. 06.40

department: Department for Applied Biosciences

country: Germany

institute: Karlsruhe Institute of Technology

description: ZM_8d_Mock_3Alu III

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Maize Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400 (Expression Analysis Technical Manual, 2001, Affymetrix)

scan_protocol: Microarrays were scanned on an Affymetrix GSC3000.

data_processing: Data were analyzed with Microarray Suite version 5.1 (MAS 5.1) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 300.

label: biotin

organism: Zea mays

source_name: leaf tissue

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

growth_protocol: Maize plants of the cultivar Early Golden Bantam were grown in a phytochamber in a 15 h / 9 h light-dark cycle; light period started with a  continuous increase from 0% to 100% light for 1h, and ended 13h later with a continuous decrease from 100% to 0% light for 1 h. Temperature was 28°C and 20°C, relative humidity 40% and 60% during light and dark periods, respectively, with a 1 h ramping for both values. Plantlets were individually sown in pots with potting soil (Fruhstorfer Pikiererde) to avoid shading of the plants.

extract_protocol: For RNA isolation, material from 30 plants was pooled and subsequently ground in liquid nitrogen by mortar and pestle. RNA was extracted from the powder with Trizol (Invitrogen) and purified using the Qiagen RNeasy kit, according to the manufacturer’s instructions, respectively.

treatment_protocol: U. maydis strain SG200 (Nature 444:97-101) was grown in liquid culture overnight to an OD600 of 1.0, harvested by centrifugation, and resuspended in water to an OD600 of 3.0; compatible strains were mixed in equal amounts immediately before infection; 0.2 ml of cell suspension mixes were injected into the leaf whorl of 6–7-day-old corn plants (as described in Mol Microbiology 42:1047-1063). Plants were infected 7 days after sowing 1 h before end of the light period with the exception of the 12 hpi samples were plants were infected during the beginning of the light period.

tag: 3. leaf of maize seedlings 8 days post mock infection, covered with aluminum foil for 6 days. Infection was performed 7 days post sowing. Dissected leaf tissue from 30 plants was pooled. Samples were harvested in the evening.


title: ZM_8d_SG200_3inf_I

description: ZM_8d_SG200 I

tag: 3. leaf of maize seedlings 8 days post Ustilago maydis infection. Infection was performed 7 days post sowing. Dissected leaf tissue from 30 plants was pooled. Samples were harvested in the evening.


title: ZM_8d_SG200_3Alu_II

description: ZM_8d_Mock_3Alu II


title: ZM_8d_Mock_3inf_III

description: ZM_8d_Mock III

tag: 3. leaf of maize seedlings 8 days post mock infection. Infection was performed 7 days post sowing. Dissected leaf tissue from 30 plants was pooled. Samples were harvested in the evening.


title: 8001D-LMN_3month

description: 2006-10-28-StratRefvs8001D-LMN-3-P17-198


title: ZM_8d_SG200_3Alu_I

description: ZM_8d_Mock_3Alu I


title: ZM_4.5d_SG200_3inf_II

description: ZM_4.5d_SG200 II

tag: 3. leaf of maize seedlings 4.5 days post Ustilago maydis infection. Infection was performed 7 days post sowing. Dissected leaf tissue from 30 plants was pooled. Samples were harvested in the morning.


title: ZM_8d_Mock_3inf_I

description: ZM_8d_Mock I


title: ZM_2d_Mock_3inf_III

description: ZM_2d_Mock III

tag: 3. leaf of maize seedlings 2 days post mock infection. Infection was performed 7 days post sowing. Dissected leaf tissue from 30 plants was pooled. Samples were harvested in the evening.


title: ZM_2d_Mock_3inf_I

description: ZM_2d_Mock I


title: ZM_24h_SG200_3inf_I

description: ZM_24h_SG200 I

tag: 3. leaf of maize seedlings 24 hours post Ustilago maydis infection. Infection was performed 7 days post sowing. Dissected leaf tissue from 30 plants was pooled. Samples were harvested in the evening.


title: ZM_8d_SG200_3inf_III

description: ZM_8d_SG200 III


title: ZM_4.5d_Mock_3inf_III

description: ZM_4.5d_Mock III

tag: 3. leaf of maize seedlings 4.5 days post mock infection. Infection was performed 7 days post sowing. Dissected leaf tissue from 30 plants was pooled. Samples were harvested in the morning.


title: ZM_4.5d_Mock_3inf_I

description: ZM_4.5d_Mock I


title: ZM_2d_SG200_3inf_II

description: ZM_2d_SG200 II

tag: 3. leaf of maize seedlings 2 days post Ustilago maydis infection. Infection was performed 7 days post sowing. Dissected leaf tissue from 30 plants was pooled. Samples were harvested in the evening.


title: ZM_4.5d_SG200_3inf_III

description: ZM_4.5d_SG200 III


title: ZM_24h_Mock_3inf_II

description: ZM_24h_Mock II

tag: 3. leaf of maize seedlings 24 hours post mock infection. Infection was performed 7 days post sowing. Dissected leaf tissue from 30 plants was pooled. Samples were harvested in the evening.


title: ZM_8d_Mock_3inf_II

description: ZM_8d_Mock II


title: ZM_4.5d_Mock_3inf_II

description: ZM_4.5d_Mock II


title: ZM_2d_SG200_3inf_I

description: ZM_2d_SG200 I


title: ZM_24h_SG200_3inf_II

description: ZM_24h_SG200 II


title: ZM_2d_Mock_3inf_II

description: ZM_2d_Mock II


title: ZM_24h_SG200_3inf_III

description: ZM_24h_SG200 III


title: ZM_24h_Mock_3inf_III

description: ZM_24h_Mock III


title: ZM_12h_SG200_3inf_I

description: ZM_12h_SG200 I

tag: 3. leaf of maize seedlings 12 hours post Ustilago maydis infection. Infection was performed 7 days post sowing. Dissected leaf tissue from 30 plants was pooled. Samples were harvested in the evening.


title: ZM_12h_SG200_3inf_III

description: ZM_12h_Mock III

tag: 3. leaf of maize seedlings 12 hours post mock infection. Infection was performed 7 days post sowing. Dissected leaf tissue from 30 plants was pooled. Samples were harvested in the evening.


title: ZM_12h_Mock_3inf_III

description: ZM_12h_SG200 III


title: ZM_24h_Mock_3inf_I

description: ZM_24h_Mock I


title: ZM_12h_SG200_3inf_II

description: ZM_12h_SG200 II


title: ZM_12h_Mock_3inf_II

description: ZM_12h_Mock II


title: ZM_8d_SG200_3inf_II

description: ZM_8d_SG200 II


title: ZM_12h_Mock_3inf_I

description: ZM_12h_Mock I


title: DPF+ F1 2 Gallus gallus Affymetrix array

city: Beaucouze

first: sandrine

last: balzergue

address: Rue G. Morel

institute: INRA

description: DPF+ and DPF- samples were compared in order to find differentially expressed genes that could explain the difference in fertility occuring between the two divergently selected lines. HG+ and HG- samples were compared in order to find differentially expressed genes that could explain the difference in fertility occuring between a single line.

hyb_protocol: labelled extract quantity: 15ug

scan_protocol: GCOS, Biotin:pmt voltage 570nm,650V,laser power 1

data_processing: The data were normalized with the gcrma algorithm (Irizarry et al., 2003), available in the Bioconductor package (Gentleman and Carey, 2002).

label: Biotin

organism: Gallus gallus

source_name: DPF+ Gallus gallus divergent hen line

label_protocol: labelling Biotin direct, amplification=yes, RNAa 20 ug.

growth_protocol: ovary - light 14 L _ 10 D - 14h and dark during 10h food : ad libitum aliment standard, pondeuse 5S temperature: 20°C

extract_protocol: DPF+ F1 2:9.1ug. F1 oocytes collected 24 hours before ovulation

tag: Gallus gallus  - age:55 week dev. stage (Boyes et al. Plant Cell 2001)

tag: DPF+ has a longer fertile period (number of eggs obtained from a single insemination)


title: DPF+ F1 1 Gallus gallus Affymetrix array

extract_protocol: DPF+ F1 1:10.5ug. F1 oocytes collected 24 hours before ovulation


title: HG- F1 1 Gallus gallus Affymetrix array

source_name: HG- Gallus gallus single hen line

extract_protocol: HG- F1 1:9.9ug. F1 oocytes collected 24 hours before ovulation

tag: HG- High growth with less fertile animals


title: HG+ F1 1 Gallus gallus Affymetrix array

source_name: HG+ Gallus gallus single hen line

extract_protocol: HG+ F1 1:12.4ug. F1 oocytes collected 24 hours before ovulation

tag: HG+ High growth with more fertile animals


title: HG+ F1 2 Gallus gallus Affymetrix array

extract_protocol: HG+ F1 2:10.2ug. F1 oocytes collected 24 hours before ovulation


title: HG- F1 2 Gallus gallus Affymetrix array

extract_protocol: HG- F1 2:8.8ug. F1 oocytes collected 24 hours before ovulation


title: DPF- F1 1 Gallus gallus Affymetrix array

source_name: DPF- Gallus gallus divergent hen line

extract_protocol: DPF- F1 1:10ug. F1 oocytes collected 24 hours before ovulation

tag: DPF- has a shorter fertile period (number of eggs obtained from a single insemination)


title: DPF- F1 2 Gallus gallus Affymetrix array

extract_protocol: DPF- F1 2:13.3ug. F1 oocytes collected 24 hours before ovulation


title: Slide6 array4

status: Public on Feb 29 2008

city: College Station

first: Huaijun

last: Zhou

state: TX

address: Rm 418D Kleberg Center,Texas A&M University

institute: Texas A&M University

description: Four arrays are included in one slide

hyb_protocol: A 825 ng of labeled cRNA with specificity over 8 were used for the hybridization reaction using the in situ hybridization kit plus (Agilent Technologies). A 100 ul hybridization solution was loaded on each of array in Agilent 4x44K microarrays. Arrays were incubated at 65 ℃ for 17h in Agilent’s microarray hybridization chambers. After hybridization, arrays were washed according to the Agilent protocol.

scan_protocol: Slides were scanned at 5-μm resolution using GenePix Personal 4100A (Molecular Devices Corporation, Sunnyvale, CA) and were saved as TIFF images. Auto Photomultiplier tube (PMT) were selected and adjusted to get the ratio of the overall intensities between the two channels (Cy3 and Cy5) was 0.9~1.1. The intensities of the spots on each image were quantified by Genepix pro 6.0 software (Molecular Devices Corporation, Downingtown, PA), and data were saved as .txt files for further analyses.

data_processing: The signal intensity of each gene was globally normalized using LOWESS by R program

source_name: Ileum

label_protocol: A 500 ng of aliquot of total RNA was reverse transcribed into cDNA using the Low RNA Input Fluorescent Linear Amplification Kit (Agilent Technologies). The synthesized cDNA was transcribed into cRNA labeled with one of two cyanine-labeled nucleotides (Perkin Elmer, Wellesley, MA). Labeled cRNA was purified with RNeasy Mini columns (Qiagen, Valecia, CA). The quality of each cRNA sample was verified by total yield and specificity measured with ND-100 spectrophotometer (NanoDrop Technologies).

tag: Broiler

tag: Male

tag: Two weeks

source_name: Spleen


title: Slide6 array3

description: Four arrays are included in one slide

extract_protocol: 825 ng of labeled cRNA with specificity over 8 were used for the hybridization reaction using the in situ hybridization kit plus (Agilent Technologies). A 100 ul hybridization solution was loaded on each of array in Agilent 4x44K microarrays. Arrays were incubated at 65 ℃ for 17h in Agilent’s microarray hybridization chambers. After hybridization, arrays were washed according to the Agilent protocol.

source_name: Cecal tonsil


title: Slide6 array1

description: Four arrays are included in one slide

source_name: Liver


title: Slide6 array2

description: Four arrays are included in one slide


title: Slide5 array3

description: Four arrays are included in one slide


title: Slide5 array4

description: Four arrays are included in one slide


title: ZM_2d_SG200_3inf_III

description: ZM_2d_SG200 III


title: ZM_4.5d_SG200_3inf_I

description: ZM_4.5d_SG200 I


title: BEAS-2B

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38003.gif
Cell Line: BEAS-2B
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

source_name: Normal female genomic DNA

tag: Normal female genomic DNA

source_name: BEAS-2B; immortalized (8381s1)

tag: BEAS-2B; immortalized (8381s1)


title: Slide4 array2

description: Four arrays are included in one slide

extract_protocol: Tissues were homogenized by tissue miser (Fisher Scientific, Houston, TX). Total RNA was isolated from each tissue using Trizol extraction method as described by the manufacturer (Invitrogen, Carlsbad, USA).


title: Slide5 array2

description: Four arrays are included in one slide


title: HBEC5-UI

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/37999.gif
Cell Line: HBEC5-UI
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

source_name: HBEC5-UI; non-immortal (8383s2)

tag: HBEC5-UI; non-immortal (8383s2)


title: SAEC

description:
Simple annotation: aCGH, Lung Cancer
Image: http://smd.stanford.edu/MicroArray/gifs/2003-02/38001.gif
Cell Line: SAEC
The sample labeled normal is a "Normal male vs.female DNA" comparison; the samples: SAEC, HBEC3-UI, HBEC5-UI, HBEC2-KT, HBEC3-KT, HBEC4-KT, HBEC5-KT, HBEC2-E, BEAS-2B are Normal lung epithelial cell lines; samples starting with L are all Lung tumor samples and all the rest are Lung cancer cell lines.

source_name: SAEC; non-immortal (8382s2)

tag: SAEC; non-immortal (8382s2)


title: Slide4 array4

description: Four arrays are included in one slide

label_protocol: Tissues were homogenized by tissue miser (Fisher Scientific, Houston, TX). Total RNA was isolated from each tissue using Trizol extraction method as described by the manufacturer (Invitrogen, Carlsbad, USA).


title: Slide3 array4

description: Four arrays are included in one slide


title: Slide4 array3

description: Four arrays are included in one slide


title: Slide2 array1

description: Four arrays are included in one slide

data_processing: The signal intensity of each gene was globally normalized using LOWESS by R program (Yang et al, 2002).


title: Slide4 array1

description: Four arrays are included in one slide


title: Slide2 array2

description: Four arrays are included in one slide


title: Slide1 array4

description: Four arrays are included in one slide


title: Slide5 array1

description: Four arrays are included in one slide


title: Slide1 array2

description: Four arrays are included in one slide

source_name: cecal tonsil


title: Slide1 array1

description: Four arrays are included in one slide

source_name: spleen

source_name: liver


title: Slide3 array1

description: Four arrays are included in one slide


title: Slide3 array3

description: Four arrays are included in one slide


title: Slide2 array3

description: Four arrays are included in one slide


title: Slide3 array2

description: Four arrays are included in one slide


title: Slide2 array4

description: Four arrays are included in one slide


title: Slide1 array3

description: Four arrays are included in one slide