title: RET1839B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Cryptogenic where age 56 yrs, when sample taken.

source_name: RET1839B, liver-transplant-AB-chip

value: 56 yrs, when sample taken.

value: Cryptogenic


title: INF090.txt~STAPH

status: Public on Aug 11 2008

type: RNA

city: Dallas

first: Damien

last: Chaussabel

state: TX

address: 3434 Live Oak

country: USA

institute: Baylor Institute for Immunology Research

description: A male subject diagnosed with Septic arthiritis/bacteremia where age 8 mths, when sample taken.

scan_protocol: GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 System.

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: INF090, STAPH

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol.

extract_protocol: RNeasy mini

tag: Age

value: 8 mths, when sample taken.

tag: Gender

value: M

tag: Ethnicity

value: Not Hispanic or Latino

tag: Race

value: Black or African American

tag: Illness

value: Septic arthiritis/bacteremia

tag: Pathogen

value: S. aureus, MSSA


title: RET1805B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Laennec's Cirrhosis and Postnecrotic Cirrhosis Type C where age 42 yrs, when sample taken.

source_name: RET1805B, liver-transplant-AB-chip

extract_protocol: RNeasy Mini

value: 42 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: (Race Not Reported)


title: INF118.txt~Ecoli

description: A male subject diagnosed with Urinary Tract Infection where age 1.5 mths, when sample taken.

source_name: INF118, Ecoli

value: 1.5 mths, when sample taken.

value: White

value: Urinary Tract Infection


title: INF089.txt~STAPH

description: A female subject diagnosed with Abscess where age 4 mths, when sample taken.

source_name: INF089, STAPH

value: 4 mths, when sample taken.

value: F

value: Abscess

value: S. aureus, MRSA


title: RET1974B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 54 yrs, when sample taken.

source_name: RET1974B, liver-transplant-AB-chip

value: 54 yrs, when sample taken.

value: Hepatitis C


title: RET1710B.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Cyrptogenic where age 50 yrs, when sample taken.

source_name: RET1710B, liver-transplant-AB-chip

value: 50 yrs, when sample taken.

value: Cyrptogenic


title: RET1714B.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Nonalcoholic Steatohepatitis where age 63 yrs, when sample taken.

source_name: RET1714B, liver-transplant-AB-chip

value: 63 yrs, when sample taken.

value: Nonalcoholic Steatohepatitis


title: RET1706B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Laennec's Cirrhosis where age 57 yrs, when sample taken.

source_name: RET1706B, liver-transplant-AB-chip

value: 57 yrs, when sample taken.

value: M

value: Laennec's Cirrhosis


title: RET1684B.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Mx. Carcinoid where age 65 yrs, when sample taken.

source_name: RET1684B, liver-transplant-AB-chip

value: 65 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: (Race Not Reported)

value: Mx. Carcinoid


title: INF074.txt~Ecoli

description: A female subject diagnosed with Urinary Tract Infection/bacteremia where age 4 mths, when sample taken.

source_name: INF074, Ecoli

value: 4 mths, when sample taken.

value: Hispanic or Latino

value: Urinary Tract Infection/bacteremia

value: E. coli


title: INF084.txt~STAPH

description: A female subject diagnosed with Abscess where age 18 yrs, when sample taken.

source_name: INF084, STAPH

value: 18 yrs, when sample taken.

value: F

value: Not Hispanic or Latino

value: Black or African American

value: Abscess

value: S. aureus, MSSA


title: RET1702B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 48 yrs, when sample taken.

source_name: RET1702B, liver-transplant-AB-chip

value: 48 yrs, when sample taken.

value: Hepatitis C


title: RET1413B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Laennec's Cirrhosis where age 52 yrs, when sample taken.

source_name: RET1413B, liver-transplant-AB-chip

value: 52 yrs, when sample taken.

value: M

value: Laennec's Cirrhosis


title: INF057.txt~Ecoli

description: A female subject whose illness is not reported where age 3 mths, when sample taken.

source_name: INF057, Ecoli

value: 3 mths, when sample taken.

value: (Illness not reported).


title: INF086.txt~Ecoli

description: A male subject whose illness is not reported where age 3 mths, when sample taken.

source_name: INF086, Ecoli

value: (Ethnicity Not Reported)

value: (Race Not Reported)


title: RET1355B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Cryptogenic where age 61 yrs, when sample taken.

source_name: RET1355B, liver-transplant-AB-chip

value: 61 yrs, when sample taken.

value: Cryptogenic


title: INF082.txt~Ecoli

description: A male subject whose illness is not reported where age 2 mths, when sample taken.

source_name: INF082, Ecoli

value: 2 mths, when sample taken.


title: RET1348B.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Fulminant Hepatic Failure where age 64 yrs, when sample taken.

source_name: RET1348B, liver-transplant-AB-chip

value: 64 yrs, when sample taken.

value: F

value: Fulminant Hepatic Failure


title: IDDM 1A.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 9 yrs, when sample taken.

source_name: IDDM 1A, typeI

value: 9 yrs, when sample taken.

value: Not Hispanic or Latino

value: White

value: Type 1 Diabetes


title: RET1689B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 43 yrs, when sample taken.

source_name: RET1689B, liver-transplant-AB-chip

value: 43 yrs, when sample taken.

value: Hepatitis C


title: RET1701B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 45 yrs, when sample taken.

source_name: RET1701B, liver-transplant-AB-chip

value: 45 yrs, when sample taken.

value: M


title: INF069.txt~STAPH

description: A male subject diagnosed with Lung abscess where age 9 mths, when sample taken.

source_name: INF069, STAPH

value: 9 mths, when sample taken.

value: Hispanic or Latino

value: Lung abscess

value: S. aureus, MSSA


title: RET1700B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 53 yrs, when sample taken.

source_name: RET1700B, liver-transplant-AB-chip

value: 53 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: (Race Not Reported)


title: RET1686B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis B where age 59 yrs, when sample taken.

source_name: RET1686B, liver-transplant-AB-chip

value: 59 yrs, when sample taken.

value: Hepatitis B


title: INF067.txt~STAPH

description: A female subject diagnosed with Osteomyelitis/bacteremia where age 7 yrs, when sample taken.

source_name: INF067, STAPH

value: 7 yrs, when sample taken.

value: F

value: Osteomyelitis/bacteremia

value: S. aureus, MRSA


title: RET1673B.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Hepatitis B where age 60 yrs, when sample taken.

source_name: RET1673B, liver-transplant-AB-chip

value: 60 yrs, when sample taken.


title: INF070.txt~STAPH

description: A female subject diagnosed with Abscess where age 15 mths, when sample taken.

source_name: INF070, STAPH

value: 15 mths, when sample taken.

value: Not Hispanic or Latino

value: White

value: Abscess


title: INF062.txt~STAPH

description: A male subject diagnosed with Osteomyelitis where age 2 yrs, when sample taken.

source_name: INF062, STAPH

value: 2 yrs, when sample taken.

value: M

value: Osteomyelitis


title: RET1329B.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Laennec's Cirrhosis where age 51 yrs, when sample taken.

source_name: RET1329B, liver-transplant-AB-chip

value: 51 yrs, when sample taken.

value: Laennec's Cirrhosis


title: IDDM 20 A.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 12 yrs, when sample taken.

source_name: IDDM 20 A, typeI

value: 12 yrs, when sample taken.

value: Type 1 Diabetes


title: IDDM 14 A.txt~typeI

description: A male subject diagnosed with Type 1 Diabetes where age 10 yrs, when sample taken.

source_name: IDDM 14 A, typeI

value: 10 yrs, when sample taken.


title: IDDM 11 A.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 14 yrs, when sample taken.

source_name: IDDM 11 A, typeI

value: 14 yrs, when sample taken.


title: RET1364B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 42 yrs, when sample taken.

source_name: RET1364B, liver-transplant-AB-chip

value: 42 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: (Race Not Reported)

value: Hepatitis C


title: RET1340B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Laennec's Cirrhosis where age 50 yrs, when sample taken.

source_name: RET1340B, liver-transplant-AB-chip

value: 50 yrs, when sample taken.


title: IDDM 18 A.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 13 yrs, when sample taken.

source_name: IDDM 18 A, typeI

value: 13 yrs, when sample taken.

value: F

value: Not Hispanic or Latino


title: H-TR.txt

description: A subject of unknown gender who is healthy where age 13 yrs, when sample taken.

source_name: H-TR

value: U

value: Healthy


title: RET1308B.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Primary Biliary Cirrhosis where age 66 yrs, when sample taken.

source_name: RET1308B, liver-transplant-AB-chip

value: 66 yrs, when sample taken.

value: Primary Biliary Cirrhosis


title: IDDM 17 A.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 5 yrs, when sample taken.

source_name: IDDM 17 A, typeI

value: 5 yrs, when sample taken.

value: Hispanic or Latino


title: INF066.txt~STAPH

description: A female subject diagnosed with Pneumonia where age 3 mths, when sample taken.

source_name: INF066, STAPH

value: 3 mths, when sample taken.

value: Black or African American

value: Pneumonia

value: S. aureus, MRSA


title: RET1340FrozB.txt~liver-transplant-AB-chip

source_name: RET1340FrozB, liver-transplant-AB-chip

value: M

value: (Ethnicity Not Reported)

value: Laennec's Cirrhosis


title: RET1325B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 50 yrs, when sample taken.

source_name: RET1325B, liver-transplant-AB-chip

value: 50 yrs, when sample taken.

value: (Race Not Reported)

value: Hepatitis C


title: RET1323FrozB.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 45 yrs, when sample taken.

source_name: RET1323FrozB, liver-transplant-AB-chip

value: 45 yrs, when sample taken.


title: IDDM 15 A.txt~typeI

source_name: IDDM 15 A, typeI

value: 13 yrs, when sample taken.

value: F

value: Not Hispanic or Latino

value: White

value: Type 1 Diabetes


title: IDDM 19 A.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 3 yrs, when sample taken.

source_name: IDDM 19 A, typeI

value: 3 yrs, when sample taken.


title: H-BW.txt

description: A subject of unknown gender who is healthy where age not reported.

source_name: H-BW

value: (Age not reported)

value: U

value: Healthy


title: IDDM 16 A.txt~typeI

description: A male subject diagnosed with Type 1 Diabetes where age 17 yrs, when sample taken.

source_name: IDDM 16 A, typeI

value: 17 yrs, when sample taken.

value: Hispanic or Latino


title: RET1323B.txt~liver-transplant-AB-chip

source_name: RET1323B, liver-transplant-AB-chip

value: M

value: (Ethnicity Not Reported)


title: PBMCs__H45_092702B_rep6

description: A female subject who is healthy where age 12 yrs, when sample taken.

source_name: PBMCs from healthy patient.

value: 12 yrs, when sample taken.

value: Black or African American


title: RET1322B.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Hepatitis C where age 32 yrs, when sample taken.

source_name: RET1322B, liver-transplant-AB-chip

value: 32 yrs, when sample taken.

value: (Race Not Reported)

value: Hepatitis C


title: PBMCs__H46_111302B_rep6

description: A female subject who is healthy where age 5 yrs, when sample taken.

value: 5 yrs, when sample taken.

value: F


title: H-SC.txt

description: A subject of unknown gender who is healthy where age 9 yrs, when sample taken.

source_name: H-SC

value: 9 yrs, when sample taken.

value: Not Hispanic or Latino


title: H-JM.txt

description: A subject of unknown gender who is healthy where age 12 yrs, when sample taken.

source_name: H-JM


title: H 37.txt

description: A female subject who is healthy where age 9 yrs, when sample taken.

value: White


title: RET1292B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 47 yrs, when sample taken.

source_name: RET1292B, liver-transplant-AB-chip

value: 47 yrs, when sample taken.


title: RET0655B.txt~liver-transplant-AB-chip

description: A subject of unknown gender whose illness is not reported where age not reported.

source_name: RET0655B, liver-transplant-AB-chip

value: (Age not reported)

value: U

value: (Illness not reported).


title: PBMCs__H27_112202B_rep6

description: A female subject who is healthy where age 6 yrs, when sample taken.

value: 6 yrs, when sample taken.

value: Healthy


title: PBMCs__H37_Healthy_U133B_rep6

description: A female subject who is healthy where age 8 yrs, when sample taken.

value: 8 yrs, when sample taken.


title: PBMCs__H36_082802B_rep6

description: A female subject who is healthy where age 7 yrs, when sample taken.

value: 7 yrs, when sample taken.


title: RET1297B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 48 yrs, when sample taken.

source_name: RET1297B, liver-transplant-AB-chip

value: 48 yrs, when sample taken.

value: M

value: (Ethnicity Not Reported)


title: H-JC.txt

description: A subject of unknown gender who is healthy where age 7 yrs, when sample taken.

source_name: H-JC

value: (Race Not Reported)


title: PBMCs__H28_Healthy_U133B_rep6

description: A female subject who is healthy where age 11 yrs, when sample taken.

value: 11 yrs, when sample taken.

value: Hispanic or Latino


title: Mel 62 PreInj U133B.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1b where age 46 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 62 PreInj U133B, melanoma-AB-chip

value: 46 yrs, when sample taken.

value: Melanoma M1b


title: H 45.txt

value: 12 yrs, when sample taken.

value: F

value: Not Hispanic or Latino

value: Black or African American


title: Mel 61 PreInj U133B.txt~melanoma-AB-chip

description:
A female subject diagnosed with Melanoma M1a where age 54 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 61 PreInj U133B, melanoma-AB-chip

value: 54 yrs, when sample taken.

value: Melanoma M1a


title: H 30.txt

description: A female subject who is healthy where age 10 yrs, when sample taken.

value: 10 yrs, when sample taken.

value: Healthy


title: PBMCs__H30_081402B_rep6


title: Mel 64 PreInj U133B.txt~melanoma-AB-chip

description:
A female subject diagnosed with Melanoma M1b where age 53 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 64 PreInj U133B, melanoma-AB-chip

value: 53 yrs, when sample taken.


title: H 46.txt

value: 5 yrs, when sample taken.

value: White


title: Mel 65 PreInj U133B.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1b where age 62 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 65 PreInj U133B, melanoma-AB-chip

value: 62 yrs, when sample taken.

value: M

value: (Ethnicity Not Reported)


title: Mel 60 PreInj U133B.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1c where age 41 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 60 PreInj U133B, melanoma-AB-chip

value: 41 yrs, when sample taken.

value: (Race Not Reported)

value: Melanoma M1c


title: 003-187-007_ACC-065.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1c and pulmonary and liver lesions where age 49 yrs, when sample taken.

CEL file not available for this chip (corrupted)

value: 49 yrs, when sample taken.


title: Lupus_041002A.txt~Lynda SLE\A-chips

description: A female subject diagnosed with SLE where age 10 yrs, when sample taken.

source_name: CB_041002A, Lynda SLE\A-chips

value: F

value: SLE


title: H 27.txt

value: 6 yrs, when sample taken.

value: Not Hispanic or Latino


title: 003-187-007_ACC-065F.txt~melanoma-AB-chip

value: Melanoma M1c and pulmonary and liver lesions


title: Mel 63 PreInj U133B.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1b where age 75 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 63 PreInj U133B, melanoma-AB-chip

value: 75 yrs, when sample taken.

value: Melanoma M1b


title: Lupus_111601A.txt~Lynda SLE\A-chips

description: A male subject diagnosed with SLE where age 16 yrs, when sample taken.

source_name: BM_111601A, Lynda SLE\A-chips

value: 16 yrs, when sample taken.

value: Black or African American


title: 003-187-005_ACC-015F.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1b where age 66 yrs, when sample taken.

CEL file not available for this chip (corrupted)

value: 66 yrs, when sample taken.

value: White


title: 003-187-005_ACC-015.txt~melanoma-AB-chip

value: M


title: Mel 58 PreInj U133B.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1c where age 67 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 58 PreInj U133B, melanoma-AB-chip

value: 67 yrs, when sample taken.

value: (Ethnicity Not Reported)


title: Mel 59 PreInj U133B.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1c where age 61 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 59 PreInj U133B, melanoma-AB-chip

value: 61 yrs, when sample taken.

value: (Race Not Reported)


title: 003-187-003_ACC-037.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1b where age 73 yrs, when sample taken.

CEL file not available for this chip (corrupted)

value: 73 yrs, when sample taken.


title: MEL 52 PRE U133B.txt~melanoma-AB-chip

description: A male subject diagnosed with Melanoma M1c where age 42 yrs, when sample taken.

source_name: MEL 52 PRE U133B, melanoma-AB-chip

value: 42 yrs, when sample taken.

value: Melanoma M1c


title: 003-187-003_ACC-037F.txt~melanoma-AB-chip


title: MEL 49 PRE U133B.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1b where age 71 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: MEL 49 PRE U133B, melanoma-AB-chip

value: 71 yrs, when sample taken.


title: MEL 47 PRE U133B.txt~melanoma-AB-chip

description:
A female subject diagnosed with Melanoma M1c where age 35 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: MEL 47 PRE U133B, melanoma-AB-chip

value: 35 yrs, when sample taken.

value: F


title: MEL 48 PRE U133 B.txt~melanoma-AB-chip

description: A male subject diagnosed with Melanoma M1b where age 68 yrs, when sample taken.

source_name: MEL 48 PRE U133 B, melanoma-AB-chip

value: 68 yrs, when sample taken.


title: INF043.txt~STAPH

description: A male subject diagnosed with Hip abscess/bacteremia where age 7 yrs, when sample taken.

source_name: INF043, STAPH

value: 7 yrs, when sample taken.

value: Not Hispanic or Latino

value: Hip abscess/bacteremia

value: S. aureus, MRSA


title: MEL 54 PRE U133B.txt~melanoma-AB-chip

description: A male subject diagnosed with Melanoma M1b where age 50 yrs, when sample taken.

source_name: MEL 54 PRE U133B, melanoma-AB-chip

value: 50 yrs, when sample taken.

value: Melanoma M1b


title: MEL 50 PRE U133B.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1c where age 52 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: MEL 50 PRE U133B, melanoma-AB-chip

value: 52 yrs, when sample taken.

value: M


title: INF031.txt~Ecoli

description: A female subject diagnosed with Urinary Tract Infection where age 3 mths, when sample taken.

source_name: INF031, Ecoli

value: 3 mths, when sample taken.

value: Hispanic or Latino

value: Urinary Tract Infection

value: E. coli


title: INF030.txt~STAPH

description: A male subject diagnosed with Bacteremia where age 15 yrs, when sample taken.

source_name: INF030, STAPH

value: 15 yrs, when sample taken.

value: Black or African American

value: Bacteremia


title: INF040.txt~STAPH

description: A male subject diagnosed with Osteomyelitis/bacteremia where age 12 yrs, when sample taken.

source_name: INF040, STAPH

value: 12 yrs, when sample taken.

value: White

value: Osteomyelitis/bacteremia

value: S. aureus, MSSA


title: Mel 57 PreInj U133B.txt~melanoma-AB-chip

description:
A female subject diagnosed with Melanoma M1b where age 36 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 57 PreInj U133B, melanoma-AB-chip

value: 36 yrs, when sample taken.

value: F

value: (Ethnicity Not Reported)

value: (Race Not Reported)


title: Mel 56 PreInj U133B.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1c where age 71 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 56 PreInj U133B, melanoma-AB-chip

value: 71 yrs, when sample taken.

value: Melanoma M1c


title: INF048.txt~Ecoli

description: A male subject diagnosed with UTI where age 2 mths, when sample taken.

source_name: INF048, Ecoli

value: 2 mths, when sample taken.

value: M

value: UTI


title: INF034.txt~Ecoli

description: A female subject diagnosed with Urinary Tract Infection where age 16 yrs, when sample taken.

source_name: INF034, Ecoli

value: 16 yrs, when sample taken.

value: Not Hispanic or Latino

value: Urinary Tract Infection

value: E. coli


title: MEL 51 PRE U133B.txt~melanoma-AB-chip

description: A male subject diagnosed with Melanoma M1c where age 56 yrs, when sample taken.

source_name: MEL 51 PRE U133B, melanoma-AB-chip

value: 56 yrs, when sample taken.


title: INF013.txt~Ecoli

description: A female subject diagnosed with Urinary Tract Infection where age 5 mths, when sample taken.

source_name: INF013, Ecoli

value: 5 mths, when sample taken.

value: White


title: INF024.txt~STAPH

description: A male subject diagnosed with Osteomyelitis where age 3 yrs, when sample taken.

source_name: INF024, STAPH

value: 3 yrs, when sample taken.

value: Black or African American

value: Osteomyelitis

value: S. aureus, MRSA


title: IDDM 9 A.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 17 yrs, when sample taken.

source_name: IDDM 9 A, typeI

value: 17 yrs, when sample taken.

value: F

value: Type 1 Diabetes


title: INF005.txt~STAPH

description: A male subject diagnosed with Osteomyelitis where age 10 yrs, when sample taken.

source_name: INF005, STAPH

value: 10 yrs, when sample taken.

value: Hispanic or Latino

value: (Race Not Reported)

value: S. aureus, MSSA


title: INF012.txt~Ecoli

description: A male subject diagnosed with Bacteremia where age 5 mths, when sample taken.

source_name: INF012, Ecoli

value: M

value: Not Hispanic or Latino

value: Bacteremia


title: MEL 45 PRE U133B.txt~melanoma-AB-chip

description:
A female subject diagnosed with Melanoma M1a where age 53 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: MEL 45 PRE U133B, melanoma-AB-chip

value: 53 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: Melanoma M1a


title: MEL 43 PRE U133B.txt~melanoma-AB-chip

description: A male subject diagnosed with Melanoma M1a where age 60 yrs, when sample taken.

source_name: MEL 43 PRE U133B, melanoma-AB-chip

value: 60 yrs, when sample taken.


title: MEL 36 PRE U133B.txt~melanoma-AB-chip

description:
A female subject diagnosed with Melanoma M1b where age 69 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: MEL 36 PRE U133B, melanoma-AB-chip

value: 69 yrs, when sample taken.

value: Melanoma M1b


title: MEL 34 PRE U133B.txt~melanoma-AB-chip

description: A female subject diagnosed with Melanoma M1b where age 28 yrs, when sample taken.

source_name: MEL 34 PRE U133B, melanoma-AB-chip

value: 28 yrs, when sample taken.


title: MEL 35 PRE U133B.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1a where age 29 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: MEL 35 PRE U133B, melanoma-AB-chip

value: 29 yrs, when sample taken.


title: IDDM 5 A.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 9 yrs, when sample taken.

source_name: IDDM 5 A, typeI

value: 9 yrs, when sample taken.

value: F

value: White


title: MEL 40 PRE U133B.txt~melanoma-AB-chip

description:
A female subject diagnosed with Melanoma M1c where age 43 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: MEL 40 PRE U133B, melanoma-AB-chip

value: 43 yrs, when sample taken.

value: Melanoma M1c


title: MEL 46 PRE U133B.txt~melanoma-AB-chip

description:
A female subject diagnosed with Melanoma M1c where age 47 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: MEL 46 PRE U133B, melanoma-AB-chip

value: 47 yrs, when sample taken.

value: (Race Not Reported)


title: IDDM 4 A.txt~typeI

description: A male subject diagnosed with Type 1 Diabetes where age 9 yrs, when sample taken.

source_name: IDDM 4 A, typeI

value: M

value: Not Hispanic or Latino

value: Selected More than One Race

value: Type 1 Diabetes


title: MEL 32 PRE U133B.txt~melanoma-AB-chip

description: A male subject diagnosed with Melanoma M1b where age 56 yrs, when sample taken.

source_name: MEL 32 PRE U133B, melanoma-AB-chip

value: 56 yrs, when sample taken.

value: (Ethnicity Not Reported)


title: IDDM 7 A.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 13 yrs, when sample taken.

source_name: IDDM 7 A, typeI

value: 13 yrs, when sample taken.


title: Mel 28 PRE U133B.txt~melanoma-AB-chip

description:
A subject of unknown gender diagnosed with Melanoma where age not reported.

CEL file not available for this chip (corrupted)

source_name: Mel 28 PRE U133B, melanoma-AB-chip

value: (Age not reported)

value: U

value: Melanoma


title: Mel 29 PRE U133B.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1c where age 41 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 29 PRE U133B, melanoma-AB-chip

value: 41 yrs, when sample taken.


title: IDDM 6 A.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 8 yrs, when sample taken.

source_name: IDDM 6 A, typeI

value: 8 yrs, when sample taken.

value: F


title: IDDM 8 A.txt~typeI

description: A male subject diagnosed with Type 1 Diabetes where age 12 yrs, when sample taken.

source_name: IDDM 8 A, typeI

value: 12 yrs, when sample taken.

value: White


title: IDDM 23 A.txt~typeI

description: A male subject diagnosed with Type 1 Diabetes where age 6 yrs, when sample taken.

source_name: IDDM 23 A, typeI

value: 6 yrs, when sample taken.


title: Mel 30 PRE U133B.txt~melanoma-AB-chip

description:
A female subject diagnosed with Melanoma M1c where age 58 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 30 PRE U133B, melanoma-AB-chip

value: 58 yrs, when sample taken.

value: (Race Not Reported)

value: Melanoma M1c


title: IDDM 24 A.txt~typeI

description: A male subject diagnosed with Type 1 Diabetes where age 2 yrs, when sample taken.

source_name: IDDM 24 A, typeI

value: 2 yrs, when sample taken.

value: M

value: Not Hispanic or Latino

value: Black or African American


title: MEL 27 PRE U133B.txt~melanoma-AB-chip

description:
A female subject diagnosed with Melanoma M1a where age 54 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: MEL 27 PRE U133B, melanoma-AB-chip

value: 54 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: Melanoma M1a


title: MEL 44 PRE U133B.txt~melanoma-AB-chip

description:
A female subject diagnosed with Melanoma M1c where age 68 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: MEL 44 PRE U133B, melanoma-AB-chip

value: 68 yrs, when sample taken.


title: IDDM 25 A.txt~typeI

description: A male subject diagnosed with Type 1 Diabetes where age 15 yrs, when sample taken.

source_name: IDDM 25 A, typeI

value: 15 yrs, when sample taken.

value: Type 1 Diabetes


title: IDDM 22 A.txt~typeI

source_name: IDDM 22 A, typeI

value: 9 yrs, when sample taken.

value: F


title: SLE99_06_0305

description: A female subject diagnosed with SLE where age 14 yrs, when sample taken.  Sample used in Longitudinal study.

value: 14 yrs, when sample taken

value: Hispanic or Latino

value: SLE


title: MEL 26 PRE U133B.txt~melanoma-AB-chip

description:
A female subject diagnosed with Melanoma M1c where age 52 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: MEL 26 PRE U133B, melanoma-AB-chip

value: 52 yrs, when sample taken.

value: (Race Not Reported)


title: Mel 24 PRE U133B.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1c where age 53 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 24 PRE U133B, melanoma-AB-chip

value: 53 yrs, when sample taken.

value: Melanoma M1c


title: SLE99_06_0105


title: IDDM 3 A.txt~typeI

source_name: IDDM 3 A, typeI

value: M

value: Not Hispanic or Latino

value: Selected More than One Race


title: SLE99_030304A

description: A female subject diagnosed with SLE where age 14 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE99_030304A, Lynda SLE\A-chips

value: 14 yrs, when sample taken.


title: MEL 23 PRE U133B.txt~melanoma-AB-chip

description:
A female subject diagnosed with Melanoma M1a where age 61 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: MEL 23 PRE U133B, melanoma-AB-chip

value: 61 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: Melanoma M1a


title: SLE98_012903A

description: A female subject diagnosed with SLE where age 14 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE98_012903A, Lynda SLE\A-chips


title: INF315B.txt~STAPH

description: A female subject diagnosed with Cellulitis where age 3 yrs, when sample taken.

source_name: INF315B, STAPH

value: 3 yrs, when sample taken.

value: Cellulitis


title: INF179b.txt~STAPH

description: A male subject diagnosed with Endocarditis/bacteremia where age 12 yrs, when sample taken.

source_name: INF179b, STAPH

value: 12 yrs, when sample taken.

value: White

value: Endocarditis/bacteremia


title: INF161B.txt~Ecoli

description: A male subject diagnosed with Urinary Tract Infection where age 5 mths, when sample taken.

source_name: INF161B, Ecoli

value: 5 mths, when sample taken.

value: Hispanic or Latino

value: Urinary Tract Infection


title: SLE96_021804A

description: A female subject diagnosed with SLE where age 16 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE96_021804A, Lynda SLE\A-chips

value: 16 yrs, when sample taken.

value: F

value: (Race Not Reported)

value: SLE


title: SLE91_10_1104

description: A female subject diagnosed with SLE where age 12 yrs, when sample taken.  Sample used in Longitudinal study.

value: 12 yrs, when sample taken

value: Not Hispanic or Latino

value: Asian


title: INF156B.txt~Ecoli

description: A male subject diagnosed with Urinary Tract Infection where age 3 mths, when sample taken.

source_name: INF156B, Ecoli

value: 3 mths, when sample taken.

value: M


title: SLE91_16_0204_new

description: A female subject diagnosed with SLE where age 11 yrs, when sample taken.  Sample used in Longitudinal study.

value: 11 yrs, when sample taken


title: INF206B.txt~STAPH

description: A female subject diagnosed with Abscess where age 1 yr, when sample taken.

source_name: INF206B, STAPH

value: 1 yr, when sample taken.

value: Abscess


title: SLE91_021604A

description: A female subject diagnosed with SLE where age 11 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE91_021604A, Lynda SLE\A-chips

value: 11 yrs, when sample taken.


title: INF152B.txt~Ecoli

description: A male subject diagnosed with Meningitis where age 2.5 mths, when sample taken.

source_name: INF152B, Ecoli

value: 2.5 mths, when sample taken.

value: Black or African American

value: Meningitis


title: SLE94_060403A

description: A female subject diagnosed with SLE where age 16 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE94_060403A, Lynda SLE\A-chips


title: INF154B.txt~Ecoli

source_name: INF154B, Ecoli

value: Hispanic or Latino

value: Urinary Tract Infection


title: INF151B.txt~Ecoli

description: A male subject diagnosed with Urinary Tract Infection where age 1.5 mths, when sample taken.

source_name: INF151B, Ecoli

value: 1.5 mths, when sample taken.


title: SLE88_18_0702

description: A female subject diagnosed with SLE where age 13 yrs, when sample taken.  Sample used in Tx SLE - U scores.

value: 13 yrs, when sample taken

value: F

value: White


title: INF168B.txt~Ecoli

description: A female subject diagnosed with Urinary Tract Infection where age 3 mths, when sample taken.

source_name: INF168B, Ecoli

value: Not Hispanic or Latino


title: SLE90_112002A

source_name: SLE90_112002A, Lynda SLE\A-chips

value: (Race Not Reported)

value: SLE


title: SLE87_110602A

description: A female subject diagnosed with SLE where age 11 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE87_110602A, Lynda SLE\A-chips


title: INF171b.txt~Ecoli

source_name: INF171b, Ecoli

value: 3 mths, when sample taken.


title: SLE85_110602A

source_name: SLE85_110602A, Lynda SLE\A-chips

value: 16 yrs, when sample taken.


title: SLE80_04_1104

value: 12 yrs, when sample taken


title: INF150B.txt~STAPH

description: A female subject diagnosed with Osteomyelitis where age 9 yrs, when sample taken.

source_name: INF150B, STAPH

value: 9 yrs, when sample taken.

value: Osteomyelitis


title: SLE91_02_0105

value: Asian


title: INF148B.txt~Ecoli

description: A female subject whose illness is not reported where age 8 yrs, when sample taken.

source_name: INF148B, Ecoli

value: 8 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: (Illness not reported).


title: SLE82_032604A

description: A female subject diagnosed with SLE where age 17 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE82_032604A, Lynda SLE\A-chips

value: 17 yrs, when sample taken.

value: Black or African American


title: SLE80_04_0405

description: A female subject diagnosed with SLE where age 13 yrs, when sample taken.  Sample used in Longitudinal study.

value: 13 yrs, when sample taken


title: INF149B.txt~Ecoli

description: A male subject diagnosed with Urinary Tract Infection where age 2 mths, when sample taken.

source_name: INF149B, Ecoli

value: 2 mths, when sample taken.

value: M

value: Urinary Tract Infection

value: E. coli


title: INF133B.txt~Ecoli

description: A male subject whose illness is not reported where age 2 mths, when sample taken.

source_name: INF133B, Ecoli

value: (Race Not Reported)


title: INF120B.txt~Ecoli

source_name: INF120B, Ecoli

value: Hispanic or Latino


title: SLE79_102402A

description: A female subject diagnosed with SLE where age 10 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE79_102402A, Lynda SLE\A-chips

value: 10 yrs, when sample taken.

value: F

value: SLE


title: INF139B.txt~Ecoli

description: A male subject diagnosed with Urinary Tract Infection where age 1 mth, when sample taken.

source_name: INF139B, Ecoli

value: 1 mth, when sample taken.


title: INF090B.txt~STAPH

description: A male subject diagnosed with Septic arthiritis/bacteremia where age 8 mths, when sample taken.

source_name: INF090B, STAPH

value: 8 mths, when sample taken.

value: Not Hispanic or Latino

value: Septic arthiritis/bacteremia


title: INF089B.txt~STAPH

description: A female subject diagnosed with Abscess where age 4 mths, when sample taken.

source_name: INF089B, STAPH

value: 4 mths, when sample taken.

value: Abscess


title: INF088B.txt~STAPH

description: A male subject diagnosed with Osteomyelitis/bacteremia where age 11 mths, when sample taken.

source_name: INF088B, STAPH

value: 11 mths, when sample taken.

value: Osteomyelitis/bacteremia


title: SLE78_02_1104

description: A female subject diagnosed with SLE where age 8 yrs, when sample taken.  Sample used in Longitudinal study.

value: 8 yrs, when sample taken


title: INF086B.txt~Ecoli

description: A male subject whose illness is not reported where age 3 mths, when sample taken.

source_name: INF086B, Ecoli

value: 3 mths, when sample taken.

value: M

value: (Ethnicity Not Reported)

value: (Illness not reported).


title: SLE78_021304A

description: A female subject diagnosed with SLE where age 8 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE78_021304A, Lynda SLE\A-chips

value: 8 yrs, when sample taken.

value: Hispanic or Latino

value: (Race Not Reported)


title: SLE83_02_1102

description: A female subject diagnosed with SLE where age 9 yrs, when sample taken.  Sample used in Tx SLE - U scores.

value: 9 yrs, when sample taken

value: F

value: Black or African American

value: SLE


title: SLE78_06_0904


title: INF118B.txt~Ecoli

source_name: INF118B, Ecoli

value: 2 mths, when sample taken.

value: Not Hispanic or Latino

value: White

value: Urinary Tract Infection

value: E. coli


title: SLE78_00_0305

description: A female subject diagnosed with SLE where age 9 yrs, when sample taken.  Sample used in Longitudinal study.


title: SLE76_060203A

description: A female subject diagnosed with SLE where age 15 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE76_060203A, Lynda SLE\A-chips

value: 15 yrs, when sample taken.


title: INF084B.txt~STAPH

description: A female subject diagnosed with Abscess where age 18 yrs, when sample taken.

source_name: INF084B, STAPH

value: 18 yrs, when sample taken.

value: Abscess


title: SLE75_060203A

description: A female subject diagnosed with SLE where age 17 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE75_060203A, Lynda SLE\A-chips

value: 17 yrs, when sample taken.


title: SLE78_02_1004

value: 8 yrs, when sample taken


title: INF082B.txt~Ecoli

source_name: INF082B, Ecoli

value: M

value: (Ethnicity Not Reported)

value: (Illness not reported).


title: SLE66_091602A

description: A female subject diagnosed with SLE where age 17 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE66_091602A, Lynda SLE\A-chips

value: 17 yrs, when sample taken

value: Hispanic or Latino

value: (Race Not Reported)


title: INF069B.txt~STAPH

description: A male subject diagnosed with Lung abscess where age 9 mths, when sample taken.

source_name: INF069B, STAPH

value: 9 mths, when sample taken.

value: Lung abscess


title: SLE67_042803A

description: A female subject diagnosed with SLE where age 16 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE67_042803A, Lynda SLE\A-chips

value: 16 yrs, when sample taken.

value: F

value: Not Hispanic or Latino

value: SLE


title: SLE65_08_1201

description: A female subject diagnosed with SLE where age 10 yrs, when sample taken.  Sample used in Tx SLE - U scores.

value: 10 yrs, when sample taken


title: INF067B.txt~STAPH

description: A female subject diagnosed with Osteomyelitis/bacteremia where age 7 yrs, when sample taken.

source_name: INF067B, STAPH

value: 7 yrs, when sample taken.

value: White

value: Osteomyelitis/bacteremia


title: SLE74_031004A

source_name: SLE74_031004A, Lynda SLE\A-chips

value: 17 yrs, when sample taken.

value: Black or African American


title: SLE62_030504A

description: A female subject diagnosed with SLE where age 16 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE62_030504A, Lynda SLE\A-chips


title: INF070B.txt~STAPH

description: A female subject diagnosed with Abscess where age 15 mths, when sample taken.

source_name: INF070B, STAPH

value: 15 mths, when sample taken.

value: Abscess


title: INF074B.txt~Ecoli

description: A female subject diagnosed with Urinary Tract Infection/bacteremia where age 4 mths, when sample taken.

source_name: INF074B, Ecoli

value: 4 mths, when sample taken.

value: Urinary Tract Infection/bacteremia


title: INF066B.txt~STAPH

description: A female subject diagnosed with Pneumonia where age 3 mths, when sample taken.

source_name: INF066B, STAPH

value: 3 mths, when sample taken.

value: Pneumonia


title: SLE60_021604A

description: A female subject diagnosed with SLE where age 12 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE60_021604A, Lynda SLE\A-chips

value: 12 yrs, when sample taken.

value: Hispanic or Latino

value: (Race Not Reported)


title: INF062B.txt~STAPH

description: A male subject diagnosed with Osteomyelitis where age 2 yrs, when sample taken.

source_name: INF062B, STAPH

value: 2 yrs, when sample taken.

value: M

value: Not Hispanic or Latino

value: Osteomyelitis


title: INF057B.txt~Ecoli

description: A female subject whose illness is not reported where age 3 mths, when sample taken.

source_name: INF057B, Ecoli

value: F

value: (Illness not reported).


title: SLE56_20_1002

value: 17 yrs, when sample taken

value: SLE


title: SLE61_10_1101

value: 16 yrs, when sample taken

value: Black or African American


title: IDDM 1B.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 9 yrs, when sample taken.

source_name: IDDM 1B, typeI

value: 9 yrs, when sample taken.

value: White

value: Type 1 Diabetes


title: IDDM 19 B.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 3 yrs, when sample taken.

source_name: IDDM 19 B, typeI

value: 3 yrs, when sample taken.


title: IDDM 17 B.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 5 yrs, when sample taken.

source_name: IDDM 17 B, typeI

value: 5 yrs, when sample taken.


title: IDDM 18 B.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 13 yrs, when sample taken.

source_name: IDDM 18 B, typeI

value: 13 yrs, when sample taken.


title: IDDM 15 B.txt~typeI

source_name: IDDM 15 B, typeI


title: IDDM 16 B.txt~typeI

description: A male subject diagnosed with Type 1 Diabetes where age 18 yrs, when sample taken.

source_name: IDDM 16 B, typeI

value: 18 yrs, when sample taken.

value: Hispanic or Latino

value: (Race Not Reported)


title: SLE57_072402A

description: A male subject diagnosed with SLE where age 12 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE57_072402A, Lynda SLE\A-chips

value: 12 yrs, when sample taken.

value: M

value: Not Hispanic or Latino


title: SLE52_071702A

source_name: SLE52_071702A, Lynda SLE\A-chips

value: 16 yrs, when sample taken.

value: F


title: SLE50_010803A

description: A female subject diagnosed with SLE where age 15 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE50_010803A, Lynda SLE\A-chips

value: 15 yrs, when sample taken.

value: SLE


title: SLE53_042803A

description: A female subject diagnosed with SLE where age 17 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE53_042803A, Lynda SLE\AB-chips

value: 17 yrs, when sample taken.


title: 003-187-007_ACC-065F_U133B.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1c and pulmonary and liver lesions where age 49 yrs, when sample taken.

CEL file not available for this chip (corrupted)

value: 49 yrs, when sample taken.


title: SLE55_04_1104

description: A female subject diagnosed with SLE where age 13 yrs, when sample taken.  Sample used in Longitudinal study.

value: 13 yrs, when sample taken

value: Black or African American


title: SLE48_110602A

description: A female subject diagnosed with SLE where age 14 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE48_110602A, Lynda SLE\A-chips

value: 14 yrs, when sample taken.

value: White


title: 003-187-007_ACC-065_U133B.txt~melanoma-AB-chip

value: Melanoma M1c and pulmonary and liver lesions


title: SLE55_04_0804


title: SLE45_090902A

description: A female subject diagnosed with SLE where age 9 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE45_090902A, Lynda SLE\A-chips

value: 9 yrs, when sample taken.


title: SLE51_071702A

description: A female subject diagnosed with SLE where age 13 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE51_071702A, Lynda SLE\A-chips

value: 13 yrs, when sample taken.

value: Hispanic or Latino


title: SLE43_012302A

description: A female subject diagnosed with SLE where age 15 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE43_012302A, Lynda SLE\A-chips

value: (Race Not Reported)


title: 003-187-005_ACC-015F_U133B.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1b where age 66 yrs, when sample taken.

CEL file not available for this chip (corrupted)

value: 66 yrs, when sample taken.

value: M

value: Melanoma M1b


title: 003-187-003_ACC-037F_U133B.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1b where age 73 yrs, when sample taken.

CEL file not available for this chip (corrupted)

value: 73 yrs, when sample taken.

value: Not Hispanic or Latino


title: IDDM 11 B.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 14 yrs, when sample taken.

source_name: IDDM 11 B, typeI

value: F

value: Type 1 Diabetes


title: SLE42_04_1004

description: A male subject diagnosed with SLE where age 16 yrs, when sample taken.  Sample used in Longitudinal study.

value: 16 yrs, when sample taken

value: SLE


title: SLE42_04_0105

description: A male subject diagnosed with SLE where age 17 yrs, when sample taken.  Sample used in Longitudinal study.

value: 17 yrs, when sample taken


title: 003-187-003_ACC-037_U133B.txt~melanoma-AB-chip


title: SLE42_04_0505


title: IDDM 14 B.txt~typeI

description: A male subject diagnosed with Type 1 Diabetes where age 10 yrs, when sample taken.

source_name: IDDM 14 B, typeI

value: 10 yrs, when sample taken.


title: SLE41_111502A

description: A male subject diagnosed with SLE where age 15 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE41_111502A, Lynda SLE\A-chips

value: 15 yrs, when sample taken.


title: INF048B.txt~Ecoli

description: A male subject diagnosed with UTI where age 2 mths, when sample taken.

source_name: INF048B, Ecoli

value: 2 mths, when sample taken.

value: (Ethnicity Not Reported)

value: UTI


title: 003-187-005_ACC-015_U133B.txt~melanoma-AB-chip

value: White


title: INF043B.txt~STAPH

description: A male subject diagnosed with Hip abscess/bacteremia where age 7 yrs, when sample taken.

source_name: INF043B, STAPH

value: 7 yrs, when sample taken.

value: Black or African American

value: Hip abscess/bacteremia


title: SLE41_14_0405

value: M

value: Hispanic or Latino

value: (Race Not Reported)


title: SLE41_10/14_0505


title: INF034B.txt~Ecoli

description: A female subject diagnosed with Urinary Tract Infection where age 16 yrs, when sample taken.

source_name: INF034B, Ecoli

value: 16 yrs, when sample taken.

value: F

value: Not Hispanic or Latino

value: Urinary Tract Infection

value: E. coli


title: INF024B.txt~STAPH

description: A male subject diagnosed with Osteomyelitis where age 3 yrs, when sample taken.

source_name: INF024B, STAPH

value: 3 yrs, when sample taken.

value: Osteomyelitis


title: INF040B.txt~STAPH

description: A male subject diagnosed with Osteomyelitis/bacteremia where age 12 yrs, when sample taken.

source_name: INF040B, STAPH

value: 12 yrs, when sample taken.

value: Osteomyelitis/bacteremia


title: INF013B.txt~Ecoli

description: A female subject diagnosed with Urinary Tract Infection where age 5 mths, when sample taken.

source_name: INF013B, Ecoli

value: 5 mths, when sample taken.


title: SLE36_20_1001

description: A female subject diagnosed with SLE where age 16 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

value: 16 yrs, when sample taken

value: SLE


title: SLE40_12_0402

description: A female subject diagnosed with SLE where age 10 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

value: 10 yrs, when sample taken

value: Black or African American


title: INF030B.txt~STAPH

description: A male subject diagnosed with Bacteremia where age 15 yrs, when sample taken.

source_name: INF030B, STAPH

value: 15 yrs, when sample taken.

value: M

value: Bacteremia


title: IDDM 9 B.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 17 yrs, when sample taken.

source_name: IDDM 9 B, typeI

value: 17 yrs, when sample taken.

value: White

value: Type 1 Diabetes


title: INF005B.txt~STAPH

description: A male subject diagnosed with Osteomyelitis where age 10 yrs, when sample taken.

source_name: INF005B, STAPH

value: 10 yrs, when sample taken.

value: Hispanic or Latino

value: (Race Not Reported)


title: INF031B.txt~Ecoli

description: A female subject diagnosed with Urinary Tract Infection where age 3 mths, when sample taken.

source_name: INF031B, Ecoli

value: 3 mths, when sample taken.

value: F

value: Urinary Tract Infection


title: INF012B.txt~Ecoli

description: A male subject diagnosed with Bacteremia where age 5 mths, when sample taken.

source_name: INF012B, Ecoli

value: 5 mths, when sample taken.

value: Not Hispanic or Latino


title: SLE31_10_0305

description: A female subject diagnosed with SLE where age 10 yrs, when sample taken.  Sample used in Longitudinal study.

value: SLE


title: SLE31_110602A

source_name: SLE31_110602A, Lynda SLE\A-chips

value: 10 yrs, when sample taken


title: SLE34_04_0804

description: A female subject diagnosed with SLE where age 13 yrs, when sample taken.  Sample used in Longitudinal study.

value: 13 yrs, when sample taken


title: SLE31_06_1204

description: A female subject diagnosed with SLE where age 9 yrs, when sample taken.  Sample used in Longitudinal study.

value: 9 yrs, when sample taken


title: SLE35_08_1101

description: A male subject diagnosed with SLE where age 16 yrs, when sample taken.  Sample used in Tx SLE - U scores.

value: 16 yrs, when sample taken

value: M


title: SLE32_06_0505

description: A female subject diagnosed with SLE where age 16 yrs, when sample taken.  Sample used in Longitudinal study.

value: Black or African American


title: SLE34_04_0505

description: A female subject diagnosed with SLE where age 14 yrs, when sample taken.  Sample used in Longitudinal study.

value: 14 yrs, when sample taken


title: IDDM 8 B.txt~typeI

description: A male subject diagnosed with Type 1 Diabetes where age 12 yrs, when sample taken.

source_name: IDDM 8 B, typeI

value: 12 yrs, when sample taken.

value: White

value: Type 1 Diabetes


title: SLE32_04_1204


title: SLE32_061103A

description: A female subject diagnosed with SLE where age 15 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE32_061103A, Lynda SLE\A-chips

value: 15 yrs, when sample taken.


title: IDDM 6 B.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 8 yrs, when sample taken.

source_name: IDDM 6 B, typeI

value: 8 yrs, when sample taken.


title: IDDM 5 b.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 9 yrs, when sample taken.

source_name: IDDM 5 b, typeI

value: 9 yrs, when sample taken.

value: F


title: SLE31_06_0405

value: Hispanic or Latino

value: (Race Not Reported)


title: IDDM 4 B.txt~typeI

description: A male subject diagnosed with Type 1 Diabetes where age 9 yrs, when sample taken.

source_name: IDDM 4 B, typeI

value: Not Hispanic or Latino

value: Selected More than One Race


title: SLE29_06_1204

description: A male subject diagnosed with SLE where age 12 yrs, when sample taken.  Sample used in Longitudinal study.

value: 12 yrs, when sample taken

value: SLE


title: SLE27_14_0202

description: A female subject diagnosed with SLE where age 13 yrs, when sample taken.  Sample used in Tx SLE - U scores.

value: 13 yrs, when sample taken


title: IDDM 23 B.txt~typeI

description: A male subject diagnosed with Type 1 Diabetes where age 6 yrs, when sample taken.

source_name: IDDM 23 B, typeI

value: 6 yrs, when sample taken.

value: M


title: SLE29_06_0704


title: IDDM 25 B.txt~typeI

description: A male subject diagnosed with Type 1 Diabetes where age 15 yrs, when sample taken.

source_name: IDDM 25 B, typeI


title: IDDM 3 B.txt~typeI

source_name: IDDM 3 B, typeI


title: SLE31_06_0105

value: 9 yrs, when sample taken


title: SLE21_12_0302

description: A female subject diagnosed with SLE where age 9 yrs, when sample taken.  Sample used in Un tx SLE - U scores.


title: SLE21_00_0904

description: A female subject diagnosed with SLE where age 11 yrs, when sample taken.  Sample used in Longitudinal study.

value: 11 yrs, when sample taken


title: SLE21_00_1204


title: IDDM 20 B.txt~typeI

description: A female subject diagnosed with Type 1 Diabetes where age 12 yrs, when sample taken.

source_name: IDDM 20 B, typeI

value: 12 yrs, when sample taken.

value: White


title: IDDM 22 B.txt~typeI

source_name: IDDM 22 B, typeI

value: Type 1 Diabetes


title: SLE99_030304B

description: A female subject diagnosed with SLE where age 14 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE99_030304B, Lynda SLE\B-chips

value: 14 yrs, when sample taken.


title: SLE98_012903B

description: A female subject diagnosed with SLE where age 14 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE98_012903B, Lynda SLE\B-chips


title: SLE20_060603A

description: A female subject diagnosed with SLE where age 12 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE20_060603A, Lynda SLE\AB-chips

value: Black or African American


title: SLE19_00_0402

description: A male subject diagnosed with SLE where age 9 yrs, when sample taken.  Sample used in Tx SLE - U scores.


title: SLE96_021804B

description: A female subject diagnosed with SLE where age 16 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE96_021804B, Lynda SLE\B-chips

value: 16 yrs, when sample taken.

value: F


title: SLE19_00_1204

description: A male subject diagnosed with SLE where age 11 yrs, when sample taken.  Sample used in Longitudinal study.


title: IDDM 24 B.txt~typeI

source_name: IDDM 24 B, typeI

value: 9 yrs, when sample taken.


title: SLE19_00_0505

value: Not Hispanic or Latino


title: SLE94_060403B

description: A female subject diagnosed with SLE where age 16 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE94_060403B, Lynda SLE\B-chips


title: SLE85_110602B

source_name: SLE85_110602B, Lynda SLE\B-chips


title: SLE88_18_0702_B


title: SLE17_02_1001

description: A male subject diagnosed with SLE where age 14 yrs, when sample taken.  Sample used in Tx SLE - U scores.

value: 14 yrs, when sample taken

value: Asian


title: SLE136_20_0205

description: A female subject diagnosed with SLE where age 15 yrs, when sample taken.  Sample used in Longitudinal study.

value: 15 yrs, when sample taken

value: SLE


title: SLE135_06_1204

description: A female subject diagnosed with SLE where age 16 yrs, when sample taken.  Sample used in Longitudinal study.

value: 16 yrs, when sample taken

value: Hispanic or Latino

value: (Race Not Reported)


title: SLE83_02_1102_B

description: A female subject diagnosed with SLE where age 9 yrs, when sample taken.  Sample used in Tx SLE - U scores.

value: 9 yrs, when sample taken


title: SLE87_110602B

description: A female subject diagnosed with SLE where age 11 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE87_110602B, Lynda SLE\B-chips

value: 11 yrs, when sample taken.


title: SLE136_16_1004

description: A female subject diagnosed with SLE where age 14 yrs, when sample taken.  Sample used in Longitudinal study.

value: White


title: SLE136_26_0904


title: IDDM 7 B.txt~typeI

description: A male subject diagnosed with Type 1 Diabetes where age 4 yrs, when sample taken.

source_name: IDDM 7 B, typeI

value: 4 yrs, when sample taken.

value: M

value: Type 1 Diabetes


title: SLE90_112202B

description: A female subject diagnosed with SLE where age 11 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE90_112202B, Lynda SLE\B-chips


title: SLE135_06_0205


title: SLE82_032604B

description: A female subject diagnosed with SLE where age 17 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE82_032604B, Lynda SLE\AB-chips

value: 17 yrs, when sample taken.

value: Black or African American


title: SLE149_20_0603

description: A male subject diagnosed with SLE where age 15 yrs, when sample taken.  Sample used in Tx SLE - U scores.

value: Other


title: SLE21_12_0302_new

description: A female subject diagnosed with SLE where age 9 yrs, when sample taken.  Sample used in Longitudinal study.

value: F


title: SLE91_021604B

source_name: SLE91_021604B, Lynda SLE\B-chips

value: Not Hispanic or Latino


title: SLE78_021304B

description: A female subject diagnosed with SLE where age 8 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE78_021304B, Lynda SLE\B-chips

value: 8 yrs, when sample taken.


title: SLE74_031004B

source_name: SLE74_031004B, Lynda SLE\B-chips


title: SLE79_102402B

description: A female subject diagnosed with SLE where age 10 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE79_102402B, Lynda SLE\B-chips

value: 10 yrs, when sample taken.


title: SLE130_04_1104

value: SLE


title: SLE125_04_0604

description: A female subject diagnosed with SLE where age 12 yrs, when sample taken.  Sample used in Longitudinal study.

value: 12 yrs, when sample taken


title: SLE125_04_1104

value: Hispanic or Latino


title: SLE125_04_0305

description: A female subject diagnosed with SLE where age 13 yrs, when sample taken.  Sample used in Longitudinal study.

value: 13 yrs, when sample taken

value: (Race Not Reported)


title: SLE76_060203B

description: A female subject diagnosed with SLE where age 15 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE76_060203B, Lynda SLE\B-chips

value: 15 yrs, when sample taken.


title: SLE75_060203B

description: A female subject diagnosed with SLE where age 17 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE75_060203B, Lynda SLE\B-chips


title: SLE121_022704A

description: A female subject diagnosed with SLE where age 12 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE121_022704A, Lynda SLE\A-chips

value: 12 yrs, when sample taken.


title: SLE130_04_0305

description: A female subject diagnosed with SLE where age 17 yrs, when sample taken.  Sample used in Longitudinal study.

value: 17 yrs, when sample taken


title: SLE67_042803B

description: A female subject diagnosed with SLE where age 16 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE67_042803B, Lynda SLE\B-chips

value: 16 yrs, when sample taken.

value: White


title: SLE65_08_1201_B

description: A female subject diagnosed with SLE where age 10 yrs, when sample taken.  Sample used in Tx SLE - U scores.

value: 10 yrs, when sample taken


title: SLE66_091602B

source_name: SLE66_091602B, Lynda SLE\B-chips


title: SLE62_030504B

description: A female subject diagnosed with SLE where age 16 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE62_030504B, Lynda SLE\B-chips


title: SLE60_021604B

description: A female subject diagnosed with SLE where age 12 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE60_021604B, Lynda SLE\B-chips


title: SLE61_10_1101_B

value: 16 yrs, when sample taken

value: Black or African American


title: SLE117_103003A

source_name: SLE117_103003A, Lynda SLE\AB-chips

value: 17 yrs, when sample taken.

value: F


title: SLE120_08_0205


title: SLE57_072402B

description: A male subject diagnosed with SLE where age 12 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE57_072402B, Lynda SLE\AB-chips

value: M

value: Not Hispanic or Latino


title: SLE120_04_1104

description: A female subject diagnosed with SLE where age 16 yrs, when sample taken.  Sample used in Longitudinal study.

value: SLE


title: SLE111_12_0904


title: SLE53_042803B

source_name: SLE53_042803B, Lynda SLE\B-chips


title: SLE114A

description: A female subject diagnosed with SLE where age 14 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE114A, Lynda SLE\A-chips

value: 14 yrs, when sample taken.


title: SLE120_08_0605

value: Hispanic or Latino


title: SLE111_08_0804


title: SLE111_070303A

description: A female subject diagnosed with SLE where age 15 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE111_070303A, Lynda SLE\A-chips


title: SLE107_060403A

description: A female subject diagnosed with SLE where age 14 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE107_060403A, Lynda SLE\A-chips


title: SLE56_20_1002_B

description: A female subject diagnosed with SLE where age 17 yrs, when sample taken.  Sample used in Tx SLE - U scores.


title: SLE50_010803B

source_name: SLE50_010803B, Lynda SLE\B-chips


title: SLE106_060203A

source_name: SLE106_060203A, Lynda SLE\A-chips


title: SLE113A

description: A female subject diagnosed with SLE where age 13 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE113A, Lynda SLE\A-chips

value: 13 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: Other


title: SLE48_110602B

source_name: SLE48_110602B, Lynda SLE\B-chips


title: SLE108_061103A

source_name: SLE108_061103A, Lynda SLE\A-chips


title: SLE41_111502B

description: A male subject diagnosed with SLE where age 15 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE41_111502B, Lynda SLE\B-chips

value: 15 yrs, when sample taken.

value: (Race Not Reported)


title: SLE105_16_0503

description: A female subject diagnosed with SLE where age 12 yrs, when sample taken.  Sample used in Longitudinal study, Tx SLE - U scores.

value: 12 yrs, when sample taken


title: SLE45_090902B

description: A female subject diagnosed with SLE where age 9 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE45_090902B, Lynda SLE\B-chips

value: 9 yrs, when sample taken.


title: SLE105_00_1104

description: A female subject diagnosed with SLE where age 14 yrs, when sample taken.  Sample used in Longitudinal study.

value: 14 yrs, when sample taken


title: SLE52_071702B

source_name: SLE52_071702B, Lynda SLE\B-chips

value: 16 yrs, when sample taken.

value: White


title: SLE51_071702B

source_name: SLE51_071702B, Lynda SLE\AB-chips


title: SLE40_12_0402_B

description: A female subject diagnosed with SLE where age 10 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

value: 10 yrs, when sample taken

value: Black or African American


title: SLE43_102302B

description: A female subject diagnosed with SLE where age 15 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE43_102302B, Lynda SLE\B-chips

value: F


title: SLE32_061103B

source_name: SLE32_061103B, Lynda SLE\B-chips

value: Not Hispanic or Latino


title: SLE35_08_1101_B

description: A male subject diagnosed with SLE where age 16 yrs, when sample taken.  Sample used in Tx SLE - U scores.

value: 16 yrs, when sample taken

value: M

value: SLE


title: SLE36_20_1001_B

value: Hispanic or Latino


title: SLE20_060603B

source_name: SLE20_060603B, Lynda SLE\AB-chips

value: 12 yrs, when sample taken.


title: SLE27_14_0202_B

description: A female subject diagnosed with SLE where age 13 yrs, when sample taken.  Sample used in Tx SLE - U scores.

value: 13 yrs, when sample taken


title: SLE21_12_0302_B

description: A female subject diagnosed with SLE where age 9 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

value: 9 yrs, when sample taken


title: SLE31_110602B

source_name: SLE31_110602B, Lynda SLE\B-chips

value: 10 yrs, when sample taken.

value: (Race Not Reported)


title: SLE17_02_1001_B

description: A male subject diagnosed with SLE where age 14 yrs, when sample taken.  Sample used in Tx SLE - U scores.

value: Asian


title: Erythroblast_control_day6_rep1A

city: Bristol

first: Belinda

last: Singleton

address: Southmead Road

country: United Kingdom

institute: Bristol Institute for Transfusion Sciences

description: Erythroid culture derived from CD34+ cells isolated from the buffy coat of a healthy blood donor.

hyb_protocol: Following fragmentation, 15 ug cRNA was hybridised to the Affymetrix HG-U133A chip according to the manufacturer’s protocols. Chips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the Affymetrix Scanner 3000.

data_processing: Single Array Expression Analysis was performed using the Affymetrix GeneChip Operating Software (GCOS) with default settings. A global scaling strategy was used to give a target intensity of 500 for each array.

source_name: Cultured erythroblast, day 6.

label_protocol: Biotinylated cRNA was prepared from 5ug total RNA according to the one-cycle target labelling protocols in the Affymetrix Expression Analysis Technical Manual.

growth_protocol: CD34+ cells were isolated from peripheral blood buffy coats by positive selection with the MiniMACS magnetic bead system according to the manufacturer’s instructions (Miltenyi Biotec, Bisley, UK). Erythroid progenitor cells were obtained by ex vivo culture of CD34+ cells, as described in the paper by Fricke B et al. Br J Hematol. 2005;131:265-277. Cells were harvested during culture for freezing and storage at -70oC in RNALater (Ambion, Huntingdon, UK).

extract_protocol: A minimum of 1.5 x106 erythroid cells were harvested every few days from day 4 to day 14 of culture and frozen in RNALater (Ambion).  Total RNA was isolated using the RNeasy Mini Kit (Qiagen, Crawley, UK), including an on-column DNaseI digestion, according to the manufacturer’s instructions. RNA yield was determined using the RiboGreen RNA Quantitation Kit (Molecular Probes, Invitrogen Ltd, Paisley, UK).

tag: Healthy blood donor. Identifier 12C3d6.


title: Erythroblast_InLu_day6_rep1A

description: Erythroid culture derived from CD34+ cells isolated from the buffy coat of a healthy blood donor with the rare blood group In(Lu) phenotype.

source_name: Cultured erythroblast, In(Lu) phenotype, day 6.

tag: Healthy blood donor with the rare blood group In(Lu) phenotype. Identifier 12In3d6.


title: Erythroblast_InLu_day11_rep2B

source_name: Cultured erythroblast, In(Lu) phenotype, day 11.

tag: Healthy blood donor with the rare blood group In(Lu) phenotype. Identifier 11In4d11.


title: SLE19_00_0402_B

description: A male subject diagnosed with SLE where age 9 yrs, when sample taken.  Sample used in Tx SLE - U scores.


title: SLE100_050703A

source_name: SLE100_050703A, Lynda SLE\A-chips

value: 13 yrs, when sample taken.


title: SLE149_20_0603_B

value: 15 yrs, when sample taken

value: Other


title: Erythroblast_InLu_day11_rep1A

tag: Healthy blood donor with the rare blood group In(Lu) phenotype. Identifier 12In3d11.


title: Erythroblast_control_day4_rep1A

source_name: Cultured erythroblast, day 4.

tag: Healthy blood donor. Identifier 12C3d4.


title: Erythroblast_control_day11_rep1A

source_name: Cultured erythroblast, day 11.

tag: Healthy blood donor. Identifier 12C3d11.


title: SLE117_103003B

description: A female subject diagnosed with SLE where age 17 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE117_103003B, Lynda SLE\B-chips

value: 17 yrs, when sample taken.


title: SLE121_022704B

description: A female subject diagnosed with SLE where age 12 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE121_022704B, Lynda SLE\B-chips


title: Erythroblast_InLu_day6_rep2B

tag: Healthy blood donor with the rare blood group In(Lu) phenotype. Identifier 11In4d6.


title: Erythroblast_InLu_day11_rep2A

tag: Healthy blood donor with the rare blood group In(Lu) phenotype. Identifier 10In4d11.


title: Erythroblast_control_day6_rep2B

tag: Healthy blood donor. Identifier 11C4d6.


title: Erythroblast_InLu_day6_rep2A

tag: Healthy blood donor with the rare blood group In(Lu) phenotype. Identifier 10In4d6.


title: Erythroblast_InLu_day4_rep1A

source_name: Cultured erythroblast, In(Lu) phenotype, day 4.

tag: Healthy blood donor with the rare blood group In(Lu) phenotype. Identifier 12In3d4.


title: Erythroblast_control_day11_rep2B

tag: Healthy blood donor. Identifier 12C4d11.


title: SLE113B

source_name: SLE113B, Lynda SLE\B-chips

tag: Age

tag: Gender

value: (Ethnicity Not Reported)


title: SLE114B

description: A female subject diagnosed with SLE where age 14 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE114B, Lynda SLE\AB-chips

value: 14 yrs, when sample taken.

value: F

tag: Ethnicity

tag: Race

value: Black or African American


title: SLE111_070303B

description: A female subject diagnosed with SLE where age 15 yrs, when sample taken.  Sample used in Un tx SLE - U scores.

source_name: SLE111_070303B, Lynda SLE\B-chips

value: 15 yrs, when sample taken.

tag: Illness


title: Erythroblast_control_day11_rep2A

source_name: Cultured erythroblast, day 11

tag: Healthy blood donor. Identifier 10C4d11.


title: Erythroblast_control_d6_rep2A

tag: Healthy blood donor. Identifier 10C4d6.


title: SLE107_060403B

description: A female subject diagnosed with SLE where age 14 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE107_060403B, Lynda SLE\B-chips

value: Not Hispanic or Latino

value: SLE


title: SLE106_060203B

source_name: SLE106_060203B, Lynda SLE\B-chips


title: SLE105_053003B

description: A female subject diagnosed with SLE where age 12 yrs, when sample taken.  Sample used in Tx SLE - U scores.

source_name: SLE105_053003B, Lynda SLE\B-chips

value: 12 yrs, when sample taken.

value: Hispanic or Latino


title: Erythroblast_InLu_day11_rep1B

tag: Healthy blood donor with the rare blood group In(Lu) phenotype. Identifier 13In3d11.


title: SLE108_061103B

source_name: SLE108_061103B, Lynda SLE\B-chips

value: White


title: Erythroblast_InLu_day4_rep1B

tag: Healthy blood donor with the rare blood group In(Lu) phenotype. Identifier 13In3d4.


title: Erythroblast_InLu_day6_rep1B

tag: Healthy blood donor with the rare blood group In(Lu) phenotype. Identifier 13In3d6.


title: SLE100_050703B

source_name: SLE100_050703B, Lynda SLE\B-chips


title: Follicular lymphoma, diagnostic biopsy: 72167

status: Public on Aug 09 2008

type: genomic

city: Vancouver

first: K-John

last: Cheung

state: BC

address: 600 West 10th Ave

country: Canada

institute: British Columbia Cancer Agency

description: Follicular lymphoma, diagnostic biopsy

hyb_protocol: Probe pre-hybridization Denature the probe at 85ºC for 10 minutes Allow the Cot-1 DNA to anneal to the DNA probe for 1 hour at 45ºC. Hybridization Maintain the probe at 45ºC. (If necessary pulse-spin the tube to pool any condensed probe.) Pipet 43 ul of the probe solution onto a 24 x 60 mm coverslip prewarmed to 45ºC. Gently lower the slide over the coverslip (try to avoid generating bubbles). Place the slide into a hybridisation cassette. Add 10 ul water into the lower groove of the cassette. Close the hybridization cassette ensuring a good seal is made by the gasket. Incubate for 36-40 hours at 45ºC. Washing Prewarm the wash buffer (0.1 xSSC with 0.1% SDS) to 45ºC. Remove the slide from the hybridization cassette. Soak slide in wash buffer until the coverslip slides off (usually 2-5 minutes). Transfer slide immediately into a fresh coplin jar containing wash buffer. Wash the slide in wash buffer for 5 minutes with agitation. Quickly change the wash buffer and repeat the wash step another 2 times. Rinse the slide with 3 changes of 0.1 x SSC at room temperature, leaving the slide in the final 0.1x SSC so it will not dry out. Dry the slide with a filtered air stream, or centrifuge the slide in a clean, dust-free 50 ml Falcon tube at 700 g for 3 minutes. Store the slides in a dark, dust free box until ready to scan. (If the slides are not scanned within 2 hours, vacuum seal the slide box and leave the box at room temperature until scanning will take place.

scan_protocol: Images were scanned using and API Arrayworx e Auto Scanner. Data was processed using the Softworx (API) analysis package. An Applied Precision Arrayworx CCD scanner is used to scan slides at a 9.75 um resolution and at a high signal to noise ratio (SNR). The exposure time for each image wavelength is between 0.2-2 seconds, the standard exposure time is 1.00 sec for Cy3 and 2.00 sec for Cy5.

data_processing: Data was normalized using the application described in Khojasteh et al BMC Bioinformatics 2005;6:274

label: Cyanine 5

molecule: genomic DNA

source_name: Follicular lymphoma, diagnostic biopsy

label_protocol: cy3/cy5 labeling

extract_protocol: Genomic DNA extracted by standard ProtK extraction.

tag: tumor grade

value: Tumor grade 1

tag: Overall survival from diagnosis (year)

tag: Time to transformation from diagnosis (year)

label: Cyanine 3

source_name: Normal genomic

tag: Novagen female Genomic DNA


title: Follicular lymphoma, diagnostic biopsy: HT001

description: Follicular lymphoma, diagnostic biopsy

value: Tumor grade 2

tag: Novagen Male Genomic DNA


title: Follicular lymphoma, diagnostic biopsy: 72165

description: Follicular lymphoma, diagnostic biopsy


title: Erythroblast_control_day6_rep1B

source_name: Cultured erythroblast, day 6

tag: Healthy blood donor. Identifier 13C3d6.


title: Follicular lymphoma, diagnostic biopsy: 72152

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 72127

description: Follicular lymphoma, diagnostic biopsy


title: Erythroblast_control_day11_rep1B

tag: Healthy blood donor. Identifier 13C3d11.


title: Erythroblast_control_day4_rep1B

source_name: Cultured erythroblast, day 4.

tag: Healthy blood donor. Identifier 13C3d4.


title: Follicular lymphoma, diagnostic biopsy: 72163

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 72174

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 72151

description: Follicular lymphoma, diagnostic biopsy

value: Tumor grade 3A


title: Follicular lymphoma, diagnostic biopsy: 68219

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 72153

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 72129

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 68216

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 72132

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 63052

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 55932

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 55530

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 55526

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 55529

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 54520

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 54531

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 54519

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 54518

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 51701

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 51707

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 54025

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 53520

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 51570

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 53485

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 54517

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 51706

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 52420

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 53519

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 54159

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 54024

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 55195

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 51568

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 51564

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 51464

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 51563

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 51703

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 51463

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 51566

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 47960

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 51086

description: Follicular lymphoma, diagnostic biopsy


title: SLE105_00_0205

tag: Age

value: 14 yrs, when sample taken

tag: Gender

value: (Race Not Reported)


title: Follicular lymphoma, diagnostic biopsy: 51085

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 47954

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46989

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46999

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46914

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46984

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46920

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46996

description: Follicular lymphoma, diagnostic biopsy

value: Tumor grade 3


title: Follicular lymphoma, diagnostic biopsy: 46994

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 47562

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46987

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 47517

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46918

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46922

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46998

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46992

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 47951

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46912

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 47598

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46911

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46901

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46902

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46915

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46904

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46910

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46903

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46851

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46909

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46774

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46752

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46826

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46594

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46596

description: Follicular lymphoma, diagnostic biopsy


title: STSL19-LOW-MA-6

city: Chicago

first: David

last: Rosenberg

state: IL

department: Committee on Neurobiology

institute: University of Chicago

description: Chip Lot # 2004891

hyb_protocol: Arrays were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.

data_processing: R 2.7.1 / Bioconductor 2.2.2

organism: Mus musculus

source_name: Murine 4-way pooled NAc tissue

label_protocol: Biotinylated cRNA were prepared using an ENZO BioArray High Yield RNA Transcript Labeling Kit

growth_protocol: STSLs bred for high (HMACT) or low (LMACT) acute MA response

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: One hour following administration of the challenge injection (SAL or 2 mg/kg MA), subjects were sacrificed by decapitation and their brains were rapidly removed.

tag: Mean age in days

value: 114.75, Selected Line:LMACT, MA dose:2.0 mg/kg


title: STSL19-LOW-MA-5

description: Chip Lot # 2004891

value: 72.75, Selected Line:LMACT, MA dose:2.0 mg/kg


title: Follicular lymphoma, diagnostic biopsy: 46597

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46756

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46754

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46760

description: Follicular lymphoma, diagnostic biopsy


title: STSL19-LOW-MA-3

description: Chip Lot # 2004891

value: 60, Selected Line:LMACT, MA dose:2.0 mg/kg


title: STSL19-LOW-MA-4

description: Chip Lot # 4003266

value: 68.75, Selected Line:LMACT, MA dose:2.0 mg/kg


title: Follicular lymphoma, diagnostic biopsy: 46591

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46570

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46569

description: Follicular lymphoma, diagnostic biopsy


title: STSL19-LOW-SAL-5

description: Chip Lot # 2004891

value: 71, Selected Line:LMACT, MA dose:0.0 mg/kg


title: Follicular lymphoma, diagnostic biopsy: 46588

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46573

description: Follicular lymphoma, diagnostic biopsy


title: STSL19-LOW-MA-2

description: Chip Lot # 2004118

value: 68.25, Selected Line:LMACT, MA dose:2.0 mg/kg


title: STSL19-LOW-SAL-6

description: Chip Lot # 2004891

value: 127.5, Selected Line:LMACT, MA dose:0.0 mg/kg


title: STSL19-LOW-SAL-4

description: Chip Lot # 2003266

value: 66.5, Selected Line:LMACT, MA dose:0.0 mg/kg


title: Follicular lymphoma, diagnostic biopsy: 46595

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46593

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46558

description: Follicular lymphoma, diagnostic biopsy


title: STSL19-LOW-SAL-3

description: Chip Lot # 2004891

value: 63.75, Selected Line:LMACT, MA dose:0.0 mg/kg


title: Follicular lymphoma, diagnostic biopsy: 46571

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46397

description: Follicular lymphoma, diagnostic biopsy


title: STSL19-LOW-SAL-2

description: Chip Lot # 2004118

value: 67.75, Selected Line:LMACT, MA dose:0.0 mg/kg


title: STSL19-HIGH-MA-4

description: Chip Lot # 2004118

value: 77.25, Selected Line:HMACT, MA dose:2.0 mg/kg


title: STSL19-HIGH-MA-6

description: Chip Lot # 2004891

value: 86, Selected Line:HMACT, MA dose:2.0 mg/kg


title: STSL19-HIGH-MA-5

description: Chip Lot # 2003266

value: 88, Selected Line:HMACT, MA dose:2.0 mg/kg


title: STSL19-LOW-SAL-1

description: Chip Lot # 2004891

value: 61.5, Selected Line:LMACT, MA dose:0.0 mg/kg


title: Follicular lymphoma, diagnostic biopsy: 46390

description: Follicular lymphoma, diagnostic biopsy

value: Tumor grade 1


title: Follicular lymphoma, diagnostic biopsy: 46379

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46389

description: Follicular lymphoma, diagnostic biopsy

value: Tumor grade 2


title: Follicular lymphoma, diagnostic biopsy: 46553

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46555

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46381

description: Follicular lymphoma, diagnostic biopsy


title: STSL19-HIGH-MA-3

description: Chip Lot # 2004891

value: 149.75, Selected Line:HMACT, MA dose:2.0 mg/kg


title: STSL19-HIGH-SAL-4

description: Chip Lot # 2004118

value: 77.25, Selected Line:HMACT, MA dose:0.0 mg/kg


title: STSL19-HIGH-SAL-5

description: Chip Lot # 2003266

value: 82.5, Selected Line:HMACT, MA dose:0.0 mg/kg


title: STSL19-HIGH-MA-1

description: Chip Lot # 2004891

value: 150, Selected Line:HMACT, MA dose:2.0 mg/kg


title: STSL19-HIGH-MA-2

description: Chip Lot # 2004891

value: 141.5, Selected Line:HMACT, MA dose:2.0 mg/kg


title: Follicular lymphoma, diagnostic biopsy: 46249

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46377

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46246

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46243

description: Follicular lymphoma, diagnostic biopsy

value: Tumor grade 3A


title: STSL19-HIGH-SAL-6

description: Chip Lot # 2004891

value: 78, Selected Line:HMACT, MA dose:0.0 mg/kg


title: STSL19-HIGH-SAL-2

description: Chip Lot # 2004891

value: 141.5, Selected Line:HMACT, MA dose:0.0 mg/kg


title: STSL19-HIGH-SAL-3

description: Chip Lot # 2004891

value: 154, Selected Line:HMACT, MA dose:0.0 mg/kg


title: Follicular lymphoma, diagnostic biopsy: 46242

description: Follicular lymphoma, diagnostic biopsy


title: Cryptolepine treated yeast compared to control H

status: Public on Aug 08 2008

city: Barcelona

first: Benjamin

last: Pina

address: Jordi Girona, 18

country: Spain

institute: IDAEA-CSIC

hyb_protocol: Microarray prehybridization was performed in 5x SSC (SSC: 150 mM NaCl, 15mM Na-citrate, pH 7.0), 0.1% SDS, 1%BSA at 42ºC for 45 min. Labeled cDNA was dried in a vacuum trap and used as probe after resuspension in 110 μl of hybridization solution (50% Formamide, 5xSSC, 0.1% SDS, 100 μg/ml salmon sperm DNA. Hybridization and washing were performed in a Lucidea Slide Pro System (GE Healthcare, Uppsala, Sweden).

scan_protocol: Arrays were scanned with a GenePix 4000B fluorescence scanner and analyzed by Genepix 5.0 Pro software (Axon Instruments, MDS Analytical Technologies, Toronto, Canada). Data was filtered according to spot quality. Only the spots whose intensity was twice background signal and, at least 75% of pixels had intensities above background plus two standard deviations were selected for further calculations.

organism: Saccharomyces cerevisiae

source_name: Control-D

label_protocol: Fifteen μg of total RNA, isolated as described above, were used for cDNA synthesis and labeling with Cy3-dUTP and Cy5-dUTP fluorescent nucleotides, following indirect labeling protocol (CyScribe post-labelling kit, GE-Healthcare, New York, NY, USA). Labeling efficiency was evaluated by measuring Cy3 or Cy5 absorbance spectrophotometrically.

growth_protocol: Complete YPD medium (10g/L yeast extract, 20 g/L peptone and 20 g/L dextrose) at 30ºC for 15 h with shaking at 250 rpm in the dark.

extract_protocol: Total RNA was extracted with the RiboPure Yeast kit (Ambion, Austin, TX, USA). Total RNA was quantified by spectrophotometry using a NanoDrop ND-1000 (NanoDrop Technologies, Wilmintong DE, USA), and its integrity checked on agarose gels. The resulting total RNA was then treated with DNase I (F. Hoffmann-La Roche, Basel Switzerland) to remove any genomic DNA.

tag: Yeast strain BY4741 erg6D (MATa, his3D1, leu2D0, met15D0, ura3D0,erg6::KanMX4),

source_name: Cryptolepine treated (17 microM)-D

treatment_protocol: Complete YPD medium (10g/L yeast extract, 20 g/L peptone and 20 g/L dextrose) plus 17 micromolar cryptolepine at 30ºC for 15 h with shaking at 250 rpm in the dark.


title: Follicular lymphoma, diagnostic biopsy: 46230

description: Follicular lymphoma, diagnostic biopsy


title: Follicular lymphoma, diagnostic biopsy: 46248

description: Follicular lymphoma, diagnostic biopsy


title: Cryptolepine treated yeast compared to control C

description: Data was filtered according to spot quality. Only the spots whose intensity was twice background signal and, at least 75% of pixels had intensities above background plus two standard deviations were selected for further calculations.

source_name: Control-C

source_name: Cryptolepine treated (17 microM)-C


title: Cryptolepine treated yeast compared to control A

description: Using of the budding yeast Saccharomyces cerevisiae to identify genes that may confer sensitivity in vivo to the antimalarial and cytotoxic agent cryptolepine.

hyb_protocol: . Labeled cDNA was dried in a vacuum trap and used as probe after resuspension in 110 µl of hybridization solution (50% formamide, 5xSSC, 0.1% SDS, 100 µg/ml salmon sperm DNA. Hybridization and washing were performed in a Lucidea Slide Pro System (GE Healthcare, Uppsala, Sweden).

scan_protocol: Arrays were scanned with a GenePix 4000B fluorescence scanner and analyzed by Genepix 5.0 Pro software (Axon Instruments, MDS Analytical Technologies, Toronto, Canada). Only spots whose intensity was 1.5 times background signal were selected for further calculations.

data_processing: Dual logarithmic values of the ratios of fluorescence rates corresponding to treated and untreated cells were used for subsequent analysis.

source_name: Untreated-A

label_protocol: Fifteen µg of total RNA, isolated as described above, were used for cDNA synthesis and labeling with Cy3-dUTP and Cy5-dUTP fluorescent nucleotides, following indirect labeling protocol (CyScribe post-labeling kit, GE-Healthcare, New York, NY, USA). Labeling efficiency was evaluated by spectrophotometric measurement of Cy3 or Cy5 absorbance.

extract_protocol: Cultures were centrifuged for 5 min at 3000 rpm, washed with 5 ml MilliQ water and subsequently centrifuged (repeated twice). Total RNA was extracted with the RiboPure Yeast kit (Ambion, Austin, TX, USA). Total RNA was quantified by spectrophotometry using a NanoDrop ND-1000 (NanoDrop Technologies, Wilmintong DE, USA), and its integrity checked on agarose gels. The resulting total RNA was then treated with DNase I (F. Hoffmann-La Roche, Basel Switzerland) to remove any genomic DNA.

tag: Yeast  strain BY4741∆erg6 (MATa, his3D1, leu2D0, met15D0, ura3D0,erg6::KanMX4)

source_name: Cryptolepine treated (7.5 microM)-A

treatment_protocol: Complete YPD medium (10g/L yeast extract, 20 g/L peptone and 20 g/L dextrose) plus 7.5 microM cryptolepine at 30ºC for 15 h with shaking at 250 rpm in the dark.


title: Cryptolepine treated yeast compared to control G

data_processing: Data was filtered according to spot quality. Only the spots whose intensity was twice background signal and, at least 75% of pixels had intensities above background plus two standard deviations were selected for further calculations.


title: Cryptolepine treated yeast compared to control D


title: Cryptolepine treated yeast compared to control F

source_name: Control-B

source_name: Cryptolepine treated (7.5 microM)-B

treatment_protocol: Complete YPD medium (10g/L yeast extract, 20 g/L peptone and 20 g/L dextrose) plus 7.5 micromolar cryptolepine at 30ºC for 15 h with shaking at 250 rpm in the dark.


title: Cryptolepine treated yeast compared to control B

tag: Yeast strain BY4741Derg6 (MATa, his3D1, leu2D0, met15D0, ura3D0, erg6::KanMX4)

treatment_protocol: Complete YPD medium (10g/L yeast extract, 20 g/L peptone and 20 g/L dextrose) plus 7.5 micormolar cryptolepine at 30ºC for 15 h with shaking at 250 rpm in the dark.


title: STSL19-HIGH-SAL-1

description: Chip Lot # 2004891

value: 150, Selected Line:HMACT, MA dose:0.0 mg/kg


title: Cryptolepine treated yeast compared to control E

source_name: Control-A


title: F.candida_Cadmium_Day7_04

city: Amsterdam

last: Nota

state: Noord Holland

address: Plesmanlaan 125

department: Research Facilities

country: Netherlands

institute: Sanquin

description: No additional information available.

hyb_protocol: Agilent Gene Expression Hybridization Kit (Agilent Technologies) was used for hybridization, which was done at 65°C for 17 hours rotating at 4 rpm in an incubator. After hybridization the arrays were washed using Gene Expression Wash Buffer Kit (Agilent Technologies).

scan_protocol: The arrays were scanned on an Agilent DNA microarray scanner (Agilent Technologies), and fluorescence intensities were measured with Feature Extraction (9.1.3.1) Software (Agilent Technologies).

data_processing: Pre-processing and normalization was done using the limma (2.9.1) package in the R (2.4.0) software environment (http://www.R-project.org/), which consisted of Edward’s background correction (set off = 30) and global loess normalization. For each channel the median background intensity was substracted from the mean signal (foreground) intensity.

organism: Folsomia candida

source_name: F.candida, Cadmium, 7 days

label_protocol: 500 ng input was used for amplification and labeling with the Agilent Low-Input Fluorescent Linear Amplification Kit (Agilent Technologies), according to the manufacturer’s guidelines with slightest modification that the transcription (labeling) reactions were done in half amounts of volume. Labeled/amplified cRNA was purified using RNeasy (Qiagen).

extract_protocol: Total RNA was extracted from all animals (~30) per jar, using SV Total RNA isolation System (Promega).

tag: Pool of approximately thirty animals of F.candida ('Berlin' Strain), age 30 days old, exposed for 7 days in a jar containing LUFA 2.2 soil spiked with cadmium (57.9 ug/g (DW)).

source_name: F.candida, Reference, 7 days

tag: Pool of approximately thirty animals of F.candida ('Berlin' Strain), age 30 days old, exposed for 7 days in a jar containing control (reference) LUFA 2.2 soil (non-spiked).


title: F.candida_Cadmium_Day7_03

description: No additional information available.