title: Liver tissue, Porcine, D_11586

value: male, Tissue:porcine liver tissue, Breed:Norwegian Duroc, High androstenone, biomat-id:11586


title: Liver tissue, Porcine, D_475

status: Public on Aug 18 2008

type: RNA

city: Tjele

first: Jakob

last: Hedegaard

address: PO-box 50

department: Department of Genetics and Biotechnology

country: Denmark

institute: Aarhus University, Faculty of Agricultural Sciences

description: High and low androstenone liver tissue samples were prepared from Duroc  boars slaughtered at approximately 100kg

hyb_protocol: The individual samples were combined with a reference sample and hybridized to porcine cDNA microarrays in a Discovery XT hybridization station (Ventana Discovery Systems,Tucson, AZ, USA). Discovery labels were printed and attached to the slides before placing the slides in the machine. The slides were then pre-hybridized at 42 ºC/32 min using 2.5 mL of a solution made of equal volumes of ChipSpread A (20 mg/mL BSA, 4x SSC, 0.5 mg/mL sodium azide) and ChipSpread B (formamide; 2 mg/mL SDS) followed by treatment with the Chip Map reagents (Chip Prep-1, -2 and - 3). The dried combined samples were resuspended in 200 µL Chiphybe80, heated at 90°C for 3 minutes, cooled to room temperature, centrifuged and carefully mixed by pipetting before loading. The slides were hybridizes at 48 ºC for 6 hours. Following hybridization, remaining oil was wiped of the backside of slides using a clean-room napkin and the slides were placed in a slide-holder from the High Throughput Wash Station (Telechem, cat.no. HTW) placed in a mTub filled with RiboWash. The slide-holder was transferred to a HTW filled with RiboWash and washed twice for 2 min with magnetic stirring at 700 rpm. The slide-holder was dipped in 2x SSC filled in a mTub, transferred to a HTW filled with 2x SSC and washed twice for 2 min with magnetic stirring at 700 rpm. The slides were then dipped 10 times in 0.1x SSC filled in a mTub and transferred to a mBox slide holder placed in a mTub filled with Elga H2O. Arrays were then dried by centrifugation (at 300 x g for 4 min placed in a mBox).

scan_protocol: Scanner: ScanArray Express HT system (Perkin Elmer), 5 µm resolution, 100 % laser power and PMT adjusted individually for each channel. Image analysis software: GenePix Pro 6 software (version 6.0.1.26, Molecular Devices Corp., CA, USA), FeatureType=Irregular Filled, BackgroundSubtraction=LocalFeature.

data_processing: Statistical analyses were carried out in R version 2.3.1 using the software package Linear Models for Microarray Analysis (Limma version 2.7.2) which is part of the Bioconductor packages. Log-transformed ratios of mean foreground intensities (not background corrected) were printtip loess normalised. The duplicate correlation function in Limma was used to consider the duplicate printing of each feature. For assessing differential expression, Limma uses linear models in combination with an empirical Bayes method to moderate the standard errors of the estimated log-fold changes. The nominal p-values were corrected for multiple testing by false discovery rates (FDR) using Benjamini and Hochberg approach. The top 1 % of the genes was considered for further analyses. The features of the arrays were mapped to a LocusLink identifier and an annotation package was built using the Bioconductor package AnnBuilder (version 1.9.14). Tests for significantly overrepresentation of GO terms (p < 0.01 and more than 10 significant genes) were conducted using the GOHyperG function of the Bioconductor package GOstats (version 1.6.0).

molecule: total RNA

organism: Sus scrofa

source_name: Liver tissue, Norwegian Duroc, Low androstenone

label_protocol: 15 µg total RNA was labelled by using the Superscript Indirect cDNA Labeling System (Invitrogen) in combination with ARES cDNA labeling kits (Molecular Probes/Invitrogen) following the enclosed protocols. Spike-in RNA from the Lucidea Universal ScoreCard (Amersham Biosciences) was added to the cDNA reactions. Green spike-in RNA was added to the samples labeled with Alexa-647 and red spike-in RNA was added to the reference labeled with Alexa-555. The amino-modified and the fluorescently labelled cDNA was purified using NucleoSpin 96 Extract II PCR Clean-up kits (Macherey-Nagel, Düren, Germany).

extract_protocol: Total-RNA extractions with DNase treatment using RNeasy Midi Kit from Qiagen

tag: Gender

value: male, Tissue:porcine liver tissue, Breed:Norwegian Duroc, Low androstenone, biomat-id:475

source_name: Porcine reference liver

tag: Breed

value: Danish Landrace x Hampshire, Tissue:liver


title: SB10C_Control_1

city: Berlin

first: Andreas

last: Klein

address: Charitéplatz 1

department: Institute of Biochemistry

country: Germany

institute: Charité (CCO)

description: PC/AA/C1/SB10C cells under standard culture conditions.

hyb_protocol: Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A 2.0 Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.

scan_protocol: Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 3000.

data_processing: The raw experimental microarray data were normalized with the GeneChip operating software (GCOS, Affymetrix). Further analyses were performed with the software “CorrXpression”.

label: Biotin

organism: Homo sapiens

source_name: Colon cancer cell line, no inhibitor

label_protocol: cRNA was amplified from 5 µg of total RNA using the standard Affymetrix procedure.

extract_protocol: RNAzol extraction of total RNA was performed according to the manufacturer's instructions (PeQLab, Biotechnology) and treated with RNase-free DNase (DNA-free, Ambion, USA).

treatment_protocol: SB10C cells were seeded at 1x10e6 per four mls of medium and cultured in a 20% FBS standard growth medium with of 0.2U/ml insulin (conditioned medium) for three days. Then, cells were incubated in the presence or absence of each of the inhibitors at a concentration of 0.5mM, in either standard growth or conditioned medium and seeded after 4 days.

tag: Human colon cancer cell line

tag: O-glycan inhibitor

tag: Control


title: Liver tissue, Porcine, D_22929

value: male, Tissue:porcine liver tissue, Breed:Norwegian Duroc, Low androstenone, biomat-id:22929


title: Liver tissue, Porcine, D_32810

source_name: Liver tissue, Norwegian Duroc, High androstenone

value: male, Tissue:porcine liver tissue, Breed:Norwegian Duroc, High androstenone, biomat-id:32810


title: HA-AGO7 Co-IP Fraction Small RNA

status: Public on Aug 16 2008

city: Saint Louis

first: James

middle: C

last: Carrington

state: MO

address: 975 North Warson Road

country: USA

institute: Donald Danforth Plant Science Center

description: HA-AGO7 Co-IP Fraction Small RNA

hyb_protocol: not applicable

scan_protocol: not applicable

data_processing: Small RNA sequences were parsed from Illumina sequencing data files through identification of adaptor boundaries. Only sequences that mapped to the Arabidopsis thaliana Col-0 genome were included in the analysis.

label: not applicable

organism: Arabidopsis thaliana

source_name: Inflorescence tissue: flower stages 1-12

label_protocol: not applicable

growth_protocol: Transgenic plants were grown on MS medium containing hygromycin (50 ug/ml) for 7 days, transferred to soil, and maintained in a standard greenhouse with 16 hr light/8 hr dark supplemental light cycle.

extract_protocol: Inflorescence tissue (flower stages 1-12) from zip-1 AGO7:HA-AGO7- or Col-0 AGO2:HA-AGO2-transformed plants was ground in lysis buffer. Cell debris was removed by centrifugation for 10 min at 12,000 g and the supernatant was partitioned into input and immunoprecipitation fractions. RNA was isolated immediately from the input fraction by phenol/chloroform extraction, followed by ethanol precipitation. HA-AGO7 and HA-AGO2 were immunoprecipitated using HA antibody and Protein A agarose beads. Beads were treated with proteinase K. RNA was isolated from the supernatant. Small RNA were fractionated on denaturing 17% polyacrylamide gels. Amplicons for sequencing were prepared by 5’ and 3’ adaptor ligations followed by RT-PCR. Sequencing-by-synthesis was done using an Illumina 1G Genome Analyzer.

tag: Col-0 ecotype, zip-1 allele, transformed with AGO7:HA-AGO7


title: HA-AGO7 Input Fraction Small RNA

description: HA-AGO7 Input Fraction Small RNA


title: BreastStroma_Normal_C246_replicate1

status: Public on Aug 15 2008

city: Montreal

first: Greg

last: Finak

state: QC

address: 3775 University

department: Mcgill Center For Bioinformatics

country: Canada

institute: McGill University

description: No additional description

hyb_protocol: Whole Human Genome 44K arrays (Agilent Technologies, product G4112A) were used for all experiments. RNA samples (500 ng) were subjected to fragmentation followed by 18 h hybridization, washing, and scanning (Agilent Technologies, model G2505B) according to the manufacturer’s protocol (manual ID #G4140-90030). Samples were hybridized against Universal Human Reference RNA (Stratagene, ID #740000, La Jolla, California, USA). Duplicate hybridizations were performed for all samples using reverse-dye labeling.

scan_protocol: Microarray data were feature extracted using Feature Extraction Software (v. 9.5.3) from Agilent with the default parameters.

data_processing:
Outlier features on arrays were flagged by the software. Arrays were required to have an average raw signal intensity of 800 in each channel, and a signal to noise ratio above 16 per channel. MvA plots were examined for signs of hybridization or labeling problems. Replicate arrays were required to have a concordance above 0.90. This level was established empirically using sets of known good replicate arrays in our database.
Data preprocessing and normalization were automated using the BIAS system. Raw feature intensities were background corrected using the RMA background correction algorithm. Resulting expression estimates were converted to log2-ratios. Within array normalization was performed using spatial and intensity-dependent loess. Median absolute deviation scale normalization was used to normalize between arrays.

source_name: Morphologically normal stroma derived from breast cancer patient

label_protocol: 2 to 4 ng of total RNA was subjected to two rounds of T7 linear amplification using Ambion Amino Allyl MessageAmp kit (Ambion, Austin, Texas, USA) and labeled with Cy3 and Cy5 dyes according to the manufacturer’s procedure. Prior to microarray hybridizations, amplified products were quantified using a spectrophotometer (Nanodrop, Wilmington, Delaware, USA) and subjected to BioAnalyzer to assay for quality (Agilent Technologies, Santa Clara, California, USA).

extract_protocol: Tissue specimens were microdissected into epithelium and stroma using a PixCell IIe LCM system (Arcturus). All microdissections were performed within three hours following tissue staining. Total RNA was extracted from each population of microdissected cells using a GITC (guanidinium isothiocyanate) extraction protocol. Briefly, LCM caps were incubated for 5 minutes (room temperature) in 200 μl GITC extraction buffer (4 M GITC, 25 mM sodium citrate pH 7.0, 0.1 M β-mercaptoethanol, 0.5% N-lauroylsarcosine) supplemented with 1.6 μl β-mercaptoethanol. Subsequently, 20 μl of 2 M NaOAc, pH 4.0, 220 μl of water-saturated phenol and 60 μl of chloroform-isoamyl alcohol (23:1) were added to the extraction buffer. Following 15 minutes incubation on ice and centrifugation (12,000 rpm, 15 minutes) the aqueous phase was removed and RNA was precipitated with 2 μl glycogen (GenHunter, Nashville, Tennessee, USA) and 200 μl isopropanol. Samples were placed at -80°C for 30 minutes and centrifuged at 4°C (12,000 rpm) for 30 minutes to pellet RNA. Pellets were washed with 70% ethanol, air dried and subjected to DNAseI treatment (Roche, Basel, Switzerland). DNAseI treatment was performed in the presence of an RNase inhibitor (Invitrogen, Carlsbad, California, USA). Subsequently, samples were re-extracted as described above and re-suspended in 10 μl of diethylpyrocarbonate-treated water. RNA was quantified using a RiboGreen assay (Molecular Probes, Carlsbad, California, USA).

tag: GRADE

value: II

tag: Node Status

value: Negative

tag: ER

value: Positive

tag: PR

tag: Age

tag: Last Follow-Up

value: Alive Without Disease

source_name: Reference

label_protocol: RNA was subjected to one round of T7 linear amplification using Ambion Amino Allyl MessageAmp kit (Ambion, Austin, Texas, USA) and labeled with Cy3 and Cy5 dyes according to the manufacturer’s procedure. Prior to microarray hybridizations, amplified products were quantified using a spectrophotometer (Nanodrop, Wilmington, Delaware, USA) and subjected to BioAnalyzer to assay for quality (Agilent Technologies, Santa Clara, California, USA).

extract_protocol: No special procedures were required to extract this material


title: BreastStroma_Normal_C278_replicate2

description: No additional description

value: III

tag: Universal Human Reference RNA (Stratagene, ID #740000, La Jolla, California, USA)


title: BreastStroma_Normal_C113_replicate1

description: No additional description


title: BreastStroma_Normal_C246_replicate2

description: No additional description


title: BreastStroma_Normal_C278_replicate1

description: No additional description


title: BreastStroma_Normal_C215_replicate1

description: No additional description


title: BreastStroma_Normal_C065_replicate2

description: No additional description

source_name: Morphologically normal stroma from breast cancer patient


title: hyb 076b

city: Sutton

first: Ian

last: Giddings

state: Surrey

address: 15 Cotswold Road

department: Section of Molecular Carcinogenesis

country: United Kingdom

institute: Institute of Cancer Research

description: amersham hyb buffer, 42C , 3 O/N

hyb_protocol: Corresponding control and treated samples labelled with different fluorophores were combined in a 50 ul hybridisation mix (19 ul Microarray Hybridisation Solution purchased from GE Healthcare and 50% deionised formamide) and heated at 70°C for 2 min and then at 37°C for 10 min. Sample was pipetted onto a microarray slide and covered with a glass cover slip. A 150ul aliquot of 6 X SSPE was pipetted underneath the slide to prevent dehydration. The hybridisation chamber was sealed and incubated at 42°C for 72 h. Type 7* slides were washed three times in 4 X SSPE, 10 mM EDTA pH 8.0 as above, followed by a 10 s wash in 50% deionised formamide, 6 X SSPE, before a brief rinse in HPLC grade water and drying with nitrogen gas.

scan_protocol: Scanner: Axon4000B-1. Voltage:500,360. Resolution (micrometers):10.

data_processing: A Lowess curve was fit to the log-intensity versus log-ratio plot. 20.0% of the data was used to calculate the Lowess fit at each point. This curve was used to adjust the control value for each measurement. If the control channel was lower than 10 then 10 was used instead.  Each gene was divided by the median of its measurements in all samples. If the median of the raw values was below 10 then each measurement for that gene was divided by 10 if the numerator was above 10, otherwise the measurement was thrown out.

source_name: 076b(oesophageal tumour)

label_protocol: Total RNA (5 ug) was reversed transcribed into cDNA and fluorescently labelled with Cy3 or Cy5 mono-reactive dyes (GE, UK) using the Cyscribe Indirect cDNA Labelling Kit protocol (GE, UK) according to the manufacturer's instructions. After labelling, repetitive sequences within the cDNA samples were blocked with 16 ug Human Cot-1 DNA (Invitrogen, UK) to prevent non-specific sequences binding to the cDNA probes.

extract_protocol: Total RNA was isolated and purified from the Trizol fraction with the RNeasy Mini Kit (Qiagen Westburg bv., Leusden, The Netherlands).

value: tumor

tag: LastFollowUp

tag: Dead(1) or Alive(0)

value: Bad

source_name: universal reference RNA (Stratagene Human Universal Reference total RNA)

extract_protocol: Universal Human total RNA Supplied By Stratagene    Centrifuge @ 12000g for 20min at 4C, Pipette out supernatant, add 200ul of 70% Ethanol, vortex and centrifuge @ 12000g for 20min. Pipette out supernatant and leave to air dry for 30 min. Add 200ul of RNAse free water.

tag: tissue type

value: normal


title: BreastStroma_Normal_C065_replicate1

description: No additional description

source_name: morphologically normal stroma derived from breast cancer patient


title: BreastStroma_Normal_C161_replicate1

description: No additional description


title: BreastStroma_Normal_C215_replicate2

description: No additional description


title: hyb 078b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage:540,390. Resolution (micrometers):10.

source_name: 078b(oesophageal tumour)

value: Good


title: hyb 075b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage:50,375. Resolution (micrometers):10.

source_name: 075b(oesophageal tumour)


title: Liver tissue, Porcine, L_3017

description: High and low androstenone liver tissue samples were prepared from Landrace  boars slaughtered at approximately 100kg

source_name: Liver tissue, Norwegian Landrace, High androstenone

value: male, Tissue:porcine liver tissue, Breed:Norwegian Landrace, High androstenone, biomat-id:3017


title: BreastStroma_Normal_C161_replicate2

description: No additional description


title: Liver tissue, Porcine, L_14953

source_name: Liver tissue, Norwegian Landrace, Low androstenone

value: male, Tissue:porcine liver tissue, Breed:Norwegian Landrace, Low androstenone, biomat-id:14953


title: hyb 072b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage:520,370. Resolution (micrometers):10.

source_name: 072b(oesophageal tumour)


title: hyb 097b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage:475,375. Resolution (micrometers):10.

source_name: 097b(oesophageal tumour)


title: hyb 117b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 450,350. Resolution (micrometers): 10.

source_name: 117b(oesophageal tumour)


title: hyb 070b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 530,375. Resolution (micrometers): 10.

source_name: 070b(oesophageal tumour)


title: hyb 131b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 480,400. Resolution (micrometers): 10.

source_name: 131b(oesophageal tumour)


title: hyb 068b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 490,420. Resolution (micrometers): 10.

source_name: 068b(oesophageal tumour)


title: hyb 027b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 40. 310. Resolution (micrometers): 10.

source_name: 027b(oesophageal tumour)


title: hyb 025b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 450, 320. Resolution (micrometers): 10.

source_name: 025b(oesophageal tumour)


title: hyb 084b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 550, 350. Resolution (micrometers): 10.

source_name: 084b(oesophageal tumour)


title: hyb 038c

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 500, 350. Resolution (micrometers): 10.

source_name: 038c(oesophageal tumour)


title: hyb 099b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 475, 375. Resolution (micrometers): 10.

source_name: 099b(oesophageal tumour)


title: hyb 031b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 490, 390. Resolution (micrometers): 10.

source_name: 031b(oesophageal tumour)

source_name: universal reference RNA (Stratagene Human Universal Reference total RNA)


title: hyb 024b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 410, 310. Resolution (micrometers): 10.

source_name: 024b(oesophageal tumour)


title: hyb 083b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 410, 330. Resolution (micrometers): 10.

source_name: 083b(oesophageal tumour)


title: hyb 023b

description: amersham hyb buffer, 42C , 3 O/N

source_name: 023b(oesophageal tumour)


title: hyb 022b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 500, 420. Resolution (micrometers): 10.

source_name: 022b(oesophageal tumour)


title: hyb 026b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000A.

source_name: 026b(oesophageal tumour)


title: BreastStroma_Normal_C113_replicate2

description: No additional description

scan_protocol: Microarray data were feature extracted using Feature Extraction Software (v. 9.5.3) from Agilent with the default parameters.

source_name: Morphologically normal stroma derived from breast cancer patient

source_name: Reference


title: hyb 101b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 500, 425. Resolution (micrometers): 10.

source_name: 101b(oesophageal tumour)


title: hyb 079b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 550, 320. Resolution (micrometers): 10.

source_name: 079b(oesophageal tumour)


title: hyb 047b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 500, 375. Resolution (micrometers): 10.

source_name: 047b(oesophageal tumour)


title: hyb 055b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 560, 340. Resolution (micrometers): 10.

source_name: 055b(oesophageal tumour)


title: hyb 040b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 500, 400. Resolution (micrometers): 10.

source_name: 040b(oesophageal tumour)


title: HA-AGO2 Co-IP Fraction Small RNA

description: HA-AGO2 Co-IP Fraction Small RNA

scan_protocol: not applicable

source_name: Inflorescence tissue: flower stages 1-12

tag: Col-0 ecotype transformed with AGO2:HA-AGO2


title: hyb 069b

description: amersham hyb buffer, 42C , 3 O/N

source_name: 069b(oesophageal tumour)


title: hyb 039b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 500,370. Resolution (micrometers): 10.

source_name: 039b(oesophageal tumour)


title: Breast Cancer Met-22

city: SAINT-CLOUD

first: clairac

last: geraldine

address: 35 rue Daily

department: Oncogenetique

country: France

institute: Centre Rene Huguenin

hyb_protocol: Standard Affymetrix procedures

scan_protocol: Standard Affymetrix procedures

data_processing: Expression values were obtained using RMA method of Bioconductor.

label: biotin

source_name: Breast Cancer Met-22

label_protocol: Label protocol was carried out according to the Eukaryotic Target Preparation protocol in the Affymetrix technical manual (701021 Rev. 5) for Genechip Expression analysis (Affymetrix).

extract_protocol: Isolation of RNA was performed using the Trizol method (Invitrogen) and was purified using RNeasy spin columns (Qiagen) according to the manufacturers' protocols.

tag: Breast cancer distant metastasis

tag: Non-lung tissue


title: HA-AGO2 Input Fraction Small RNA

description: HA-AGO2 Input Fraction Small RNA


title: hyb 085b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 520, 400. Resolution (micrometers): 10.

source_name: 085b(oesophageal tumour)

source_name: universal reference RNA (Stratagene Human Universal Reference total RNA)


title: Breast Cancer Met-21

source_name: Breast Cancer Met-21


title: Wnt3a 4 hrs, rep 4

city: Rotterdam

first: Derk

last: ten Berge

address: Wytemaweg 80

department: Cell Biology

country: Netherlands

institute: ErasmusMC

description:
CH1:_probe_amount_on_dye_basis_(pmol): 30
CH2: probe_amount_on_dye_basis_(pmol): 30
Wnt3a 4 hrs, rep 4

hyb_protocol: Labeled probes, 20-40 pmol on dye basis as indicated, were hybridized to slides in 3.4x SSC and 0.3% SDS at 65C for 14-18 hrs. Hybridized slides were washed at room temperature in 2xSSC+0.03% SDS, 2xSSC, 1xSSC, and 0.2xSSC, 2 minutes each wash, and then dried by centrifugation at 600 rpm for 2 min.

scan_protocol: Slides were scanned using a GenePix 4000a Microarray scanner (Axon Instruments, Union City, CA).

data_processing: Features were extracted from the scans using GenePix Pro 4.0.1.18. The data were normalized using regression correlation.

molecule: polyA RNA

organism: Mus musculus

source_name: E11.5 limb bud cells, 4 hr Wnt3a treated

label_protocol: 2 µg of polyA RNA were annealed with 4 µg of anchored oligo-dT primer in a total volume of 15 µl for 10 min at 65C, then reverse transcribed for 1 hr at 42C in presence of 400 U Superscript II (Gibco BRL) and 0.5 mM dATP, dCTP, dGTP and 0.2 mM dTTP, and 0.1 mM Cy3- or Cy5-dTTP (Amersham).

growth_protocol: E11.5 mouse whole limb bud cells were plated in 6-wells plates at 12x10^6 cells/well in DMEM/10% fetal calf serum and cultured for 4 hrs.

extract_protocol: PolyA+ RNA was isolated using Qiagen RNeasy and Oligotex kits following manufacturer protocols. Cells were lysed in the plate and lysates homogenized using 23G needles.

treatment_protocol: The culture medium was replaced by medium containing purified Wnt3a protein (200 ng/ml) or an equivalent amount of vehicle (pbs, 1% chaps, 0.5 M NaCl, 400 mg/ml BSA; 2 microliter/ml), and the cells cultured another 2 or 4 hrs, as indicated.

tag: Mouse strain CD1, embryonic stage E11.5

source_name: 3/4 total brain polyA RNA, 1/4 E12.5 total embryo polyA RNA

tag: Brains from 4 weeks old CD1 mice; CD1 embryos.


title: Breast Cancer Met-23

source_name: Breast Cancer Met-23


title: hyb 089b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 535, 420. Resolution (micrometers): 10.

source_name: 089b(oesophageal tumour)


title: Wnt3a 4 hrs, rep 3

description:
CH1:_probe_amount_on_dye_basis_(pmol): 30
CH2: probe_amount_on_dye_basis_(pmol): 30
Wnt3a 4 hrs, rep 3


title: Breast Cancer Met-16

source_name: Breast Cancer Met-16


title: Breast Cancer Met-18

source_name: Breast Cancer Met-18


title: hyb 086b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 530, 390. Resolution (micrometers): 10.

source_name: 086b(oesophageal tumour)


title: Breast Cancer Met-20

source_name: Breast Cancer Met-20


title: Wnt3a 4 hrs, rep 2

description:
CH1:_probe_amount_on_dye_basis_(pmol): 25
CH2: probe_amount_on_dye_basis_(pmol): 25
Wnt3a 4 hrs, rep 2


title: Breast Cancer Met-15

source_name: Breast Cancer Met-15

tag: Lung tissue


title: hyb 077b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 525, 500. Resolution (micrometers): 10.

source_name: 077b(oesophageal tumour)


title: hyb 081b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 570, 400. Resolution (micrometers): 10.

source_name: 081b(oesophageal tumour)


title: Breast Cancer Met-17

source_name: Breast Cancer Met-17


title: hyb 045b

description: amersham hyb buffer, 42C , 3 O/N

hyb_protocol: Hybridization and washing were performed according to the Agilent manual.

scan_protocol: Scanner: Axon4000B-1. Voltage: 640, 390. Resolution (micrometers): 10.

source_name: 045b(oesophageal tumour)


title: Breast Cancer Met-13

source_name: Breast Cancer Met-13


title: Vehicle 4 hrs, rep 3

description:
CH1:_probe_amount_on_dye_basis_(pmol): 30
CH2: probe_amount_on_dye_basis_(pmol): 30
Vehicle 4 hrs, rep 3

source_name: E11.5 limb bud cells, 4 hr vehicle treated


title: Breast Cancer Met-12

source_name: Breast Cancer Met-12


title: Wnt3a 4 hrs, rep 1

description:
CH1:_probe_amount_on_dye_basis_(pmol): 25
CH2: probe_amount_on_dye_basis_(pmol): 25
Wnt3a 4 hrs, rep 1


title: Vehicle 4 hrs, rep 2

description:
CH1:_probe_amount_on_dye_basis_(pmol): 25
CH2: probe_amount_on_dye_basis_(pmol): 25
Vehicle 4 hrs, rep 2


title: Breast Cancer Met-14

source_name: Breast Cancer Met-14


title: Breast Cancer Met-11

source_name: Breast Cancer Met-11


title: Wnt3a 2 hrs, rep 4

description:
CH1:_probe_amount_on_dye_basis_(pmol): 40
CH2: probe_amount_on_dye_basis_(pmol): 40
Wnt3a 2 hrs, rep 4

source_name: E11.5 limb bud cells, 2 hr Wnt3a treated

source_name: 3/4 total brain polyA RNA, 1/4 E12.5 total embryo polyA RNA


title: Vehicle 4 hrs, rep 1

description:
CH1:_probe_amount_on_dye_basis_(pmol): 25
CH2: probe_amount_on_dye_basis_(pmol): 25
Vehicle 4 hrs, rep 1


title: Breast Cancer Met-9

source_name: Breast Cancer Met-9


title: Wnt3a 2 hrs, rep 2

description:
CH1:_probe_amount_on_dye_basis_(pmol): 40
CH2: probe_amount_on_dye_basis_(pmol): 40
Wnt3a 2 hrs, rep 2


title: Breast Cancer Met-10

source_name: Breast Cancer Met-10


title: Breast Cancer Met-7

source_name: Breast Cancer Met-7


title: Vehicle 2 hrs, rep 5

description:
CH1:_probe_amount_on_dye_basis_(pmol): 40
CH2: probe_amount_on_dye_basis_(pmol): 40
Vehicle 2 hrs, rep 5

source_name: E11.5 limb bud cells, 2 hr vehicle treated


title: Breast Cancer Met-5

source_name: Breast Cancer Met-5


title: Breast Cancer Met-8

source_name: Breast Cancer Met-8


title: Breast Cancer Met-6

source_name: Breast Cancer Met-6


title: Vehicle 2 hrs, rep 2

description:
CH1:_probe_amount_on_dye_basis_(pmol): 40
CH2: probe_amount_on_dye_basis_(pmol): 40
Vehicle 2 hrs, rep 2


title: Vehicle 2 hrs, rep 3

description:
CH1:_probe_amount_on_dye_basis_(pmol): 40
CH2: probe_amount_on_dye_basis_(pmol): 40
Vehicle 2 hrs, rep 3


title: Breast Cancer Met-3

source_name: Breast Cancer Met-3

tag: Non-Lung tissue


title: Breast Cancer Met-4

source_name: Breast Cancer Met-4


title: Breast Cancer Met-1

source_name: Breast Cancer Met-1


title: Vehicle 2 hrs, rep 1

description:
CH1:_probe_amount_on_dye_basis_(pmol): 24
CH2: probe_amount_on_dye_basis_(pmol): 27
Vehicle 2 hrs, rep 1


title: 144-2SPL | NoDox

status: Public on Aug 12 2008

first: Lars

last: Bullinger

address: Augustenburger Platz 1

department: Hematology, Oncology and Tumorimmunology

institute: Charité

description: Biological replicate: NoDox

hyb_protocol: co-hybridization of lymphoma cell lines and common reference was performed for 14 hrs onto the miRNA microarrays and washed according to the manufacturer’s protocol (Ambion)

scan_protocol: Microarrays were imaged using an Axon GenePix 4000B laser scanner (Axon Instruments). Fluorescence ratios were extracted (tumor/common reference) after subtracting the background using the GenePix Pro 6.0 software (Axon Instruments)

data_processing: fluorescent ratios were log2 transformed, normalized and filtered in analogy to previous reports for mRNA expression microarrays (Bullinger et al. N Engl J Med 2004)

source_name: murine lymphoma cell line, 144-2SPL, NoDox

label_protocol: end-labeling strategy (mirVana miRNA Labeling Kit, Ambion)

growth_protocol: cell lines were cultured in RPMI medium 1640 with 10% FCS, 1% Penicillin/Streptomycin, 1% L-Glutamin, 1% non-essential amino acids, and 0.1% b-Mercaptoethanol

extract_protocol: total RNA was isolated using the mirVana miRNA Isolation Kit (Ambion) followed by isolating size-fractionated small RNA using the flashPAGE Fractionator System (Ambion)

treatment_protocol: NoDox

tag: murine lymphoma cell line | 144-2SPL

tag: 18 hours

tag: Tissue

value: lymphocytes

tag: Strain

value: NMRI mice

source_name: pool of RNA derived from differentiated wild type mouse tissues

treatment_protocol: 18 hours Doxycycline (Dox) treatment (1µg/ml)

value: NMRI


title: 144-2SPL | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 144-2SPL, Dox

treatment_protocol: Dox


title: hyb 087b

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 580, 385. Resolution (micrometers): 10.

source_name: 087b(oesophageal tumour)

source_name: universal reference RNA (Stratagene Human Universal Reference total RNA)


title: 259-2SPL | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 259-2SPL, NoDox

tag: murine lymphoma cell line | 259-2SPL


title: 114-2TH | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 114-2TH, NoDox

tag: murine lymphoma cell line | 114-2TH


title: 259-2SPL | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 259-2SPL, Dox


title: Wnt3a 2 hrs, rep 1

description:
CH1:_probe_amount_on_dye_basis_(pmol): 20
CH2: probe_amount_on_dye_basis_(pmol): 27
Wnt3a 2 hrs, rep 1

source_name: E11.5 limb bud cells, 2 hr Wnt3a treated

source_name: 3/4 total brain polyA RNA, 1/4 E12.5 total embryo polyA RNA


title: 141-2TH | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 141-2TH, NoDox

tag: murine lymphoma cell line | 141-2TH


title: 134-2SPL | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 134-2SPL, Dox

tag: murine lymphoma cell line | 134-2SPL


title: 134-2SPL | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 134-2SPL, NoDox


title: 141-2TH | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 141-2TH, Dox


title: 121-2ILN | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 121-2ILN, NoDox

tag: murine lymphoma cell line | 121-2ILN


title: 238-2TH | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 238-2TH, NoDox

tag: murine lymphoma cell line | 238-2TH


title: 121-2ILN | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 121-2ILN, Dox


title: 238-2TH | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 238-2TH, Dox


title: 4347-6TH | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 4347-6TH, NoDox

tag: murine lymphoma cell line | 4347-6TH

source_name: pool of RNA derived from differentiated wild type mouse tissues


title: 5532-2SPL | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 5532-2SPL, Dox

tag: murine lymphoma cell line | 5532-2SPL


title: 5532-2SPL | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 5532-2SPL, NoDox


title: 114-2TH | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 114-2TH, Dox


title: Wnt3a 2 hrs, rep 3

description:
CH1:_probe_amount_on_dye_basis_(pmol): 40
CH2: probe_amount_on_dye_basis_(pmol): 40
Wnt3a 2 hrs, rep 3


title: 5522-2SPL | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 5522-2SPL, NoDox

tag: murine lymphoma cell line | 5522-2SPL


title: Vehicle 4 hrs, rep 4

description:
CH1:_probe_amount_on_dye_basis_(pmol): 30
CH2: probe_amount_on_dye_basis_(pmol): 30
Vehicle 4 hrs, rep 4

source_name: E11.5 limb bud cells, 4 hr vehicle treated

tag: Mouse strain CD1, embryonic stage E11.5


title: Breast Cancer Met-19

source_name: Breast Cancer Met-19

tag: Breast cancer distant metastasis

tag: Non-lung tissue


title: 377-2TH | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 377-2TH, NoDox

tag: murine lymphoma cell line | 377-2TH


title: 377-2TH | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 377-2TH, Dox


title: 669-2SPL#1 | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 669-2SPL#1, Dox

tag: murine lymphoma cell line | 669-2SPL#1


title: 669-2SPL#1 | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 669-2SPL#1, NoDox

tag: 18 hours


title: 4502-8TH | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 4502-8TH, NoDox

tag: murine lymphoma cell line | 4502-8TH

tag: Tissue


title: 675-2TH#2 | Dox

description: Technical replicate: 13242881

source_name: murine lymphoma cell line, 675-2TH#2, Dox

tag: murine lymphoma cell line | 675-2TH#2

tag: Strain


title: 675-2TH#1 | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 675-2TH#1, Dox

tag: murine lymphoma cell line | 675-2TH#1


title: 1749-2SPL | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 1749-2SPL, NoDox

tag: murine lymphoma cell line | 1749-2SPL


title: 1749-2SPL | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 1749-2SPL, Dox


title: 675-2TH#1 | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 675-2TH#1, NoDox


title: 4502-8TH | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 4502-8TH, Dox

source_name: pool of RNA derived from differentiated wild type mouse tissues


title: 5522-2SPL | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 5522-2SPL, Dox


title: 675-2TH#2 | NoDox

description: Technical replicate: 13242882

source_name: murine lymphoma cell line, 675-2TH#2, NoDox


title: 4347-6TH | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 4347-6TH, Dox


title: 1415-2TH | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 1415-2TH, Dox

tag: murine lymphoma cell line | 1415-2TH


title: 5534-2SPL | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 5534-2SPL, NoDox

tag: murine lymphoma cell line | 5534-2SPL


title: 5534-2SPL | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 5534-2SPL, Dox


title: 7755-4TH | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 7755-4TH, NoDox

tag: murine lymphoma cell line | 7755-4TH


title: 7755-4TH | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 7755-4TH, Dox


title: 5524-2TH | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 5524-2TH, Dox

tag: murine lymphoma cell line | 5524-2TH


title: 4491-8TH | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 4491-8TH, NoDox

tag: murine lymphoma cell line | 4491-8TH


title: 4702-8TH | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 4702-8TH, Dox

tag: murine lymphoma cell line | 4702-8TH


title: 4491-8TH | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 4491-8TH, Dox


title: 1415-2TH | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 1415-2TH, NoDox


title: 4702-8TH | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 4702-8TH, NoDox


title: 5542-2TH | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 5542-2TH, NoDox

tag: murine lymphoma cell line | 5542-2TH


title: 5542-2TH | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 5542-2TH, Dox


title: 5527-2SPL#1 | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 5527-2SPL#1, NoDox

tag: murine lymphoma cell line | 5527-2SPL#1

source_name: pool of RNA derived from differentiated wild type mouse tissues


title: 5681-3SPL | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 5681-3SPL, Dox

tag: murine lymphoma cell line | 5681-3SPL


title: 5527-2SPL#1 | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 5527-2SPL#1, Dox


title: 7561MLB25LN | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 7561MLB25LN, NoDox

tag: murine lymphoma cell line | 7561MLB25LN


title: Vehicle 2 hrs, rep 4

description:
CH1:_probe_amount_on_dye_basis_(pmol): 40
CH2: probe_amount_on_dye_basis_(pmol): 40
Vehicle 2 hrs, rep 4

source_name: E11.5 limb bud cells, 2 hr vehicle treated

tag: Mouse strain CD1, embryonic stage E11.5

source_name: 3/4 total brain polyA RNA, 1/4 E12.5 total embryo polyA RNA

tag: Brains from 4 weeks old CD1 mice; CD1 embryos.


title: 5674-3TH | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 5674-3TH, Dox

tag: murine lymphoma cell line | 5674-3TH

tag: 18 hours

tag: Tissue


title: 5674-3TH | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 5674-3TH, NoDox

tag: Strain


title: hyb 042b (6K)

description: amersham hyb buffer, 42C , 3 O/N

scan_protocol: Scanner: Axon4000B-1. Voltage: 560, 400. Resolution (micrometers): 10.

source_name: 042b(oesophageal tumour)

tag: LastFollowUp

tag: Dead(1) or Alive(0)

source_name: universal reference RNA (Stratagene Human Universal Reference total RNA)

tag: tissue type


title: Breast Cancer Met-2

source_name: Breast Cancer Met-2

tag: Breast cancer distant metastasis

tag: Non-lung tissue


title: 5524-2TH | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 5524-2TH, NoDox

tag: murine lymphoma cell line | 5524-2TH


title: 5681-3SPL | NoDox

description: Biological replicate: NoDox

source_name: murine lymphoma cell line, 5681-3SPL, NoDox


title: 1805DB

city: Gothenburg

first: Karolina

last: Partheen

address: Blå Stråket 2

department: department of Oncology

country: Sweden

institute: University of Gothenburg

description: Comparison of ovarian tumors of 5 year survivors to deceased patients

hyb_protocol: The probes were purified using ChipShot™ labelling cleanup system (Promega). The hybridizations were carried out using Pronto! Micro Array reagent systems (Corning Inc.). For each sample, labelled tumour cDNA and reference cDNA were co-precipitated and hybridised to the oligoarray slide.  After hybridization, slides were washed sequential.

scan_protocol: Scanned on an Agilent G2565AA scanner. Images were quantified using Genepix 6.0.0.74 (Axon Instruments).

data_processing: Intensities were calculated by mean spot - median background. Flagged spots were removed as well as spots with intensities below 20 in both channels. Intensities below 20 in one channel were set to 20 to compensate for extreme quotients. Loess normalization was used

source_name: serous ovarian adenocarcinoma

label_protocol: Probes labelled with Cy3 were synthesized from 5 µg of the total tumour RNA and reference labelled with Cy5 were synthesized from 5 µg of commercial reference RNA by reverse transcription.

extract_protocol: Homogenization with Trizol followed by total RNA extraction with Rneasy mini kit following manufacturer's instructions (Qiagen).

tag: fresh frozen tumour

tag: deceased

tag: stage IIIab

tag: macroscopic residual tumor

tag: age at diagnosis 82

tag: post surgical chemo therapy farmorubicine, carboplatin and cyclophosphamide

source_name: Universal Human Reference RNA purchased from Stratagene

tag: Reference


title: 7561MLB25LN | Dox

description: Biological replicate: Dox

source_name: murine lymphoma cell line, 7561MLB25LN, Dox

tag: murine lymphoma cell line | 7561MLB25LN


title: 1658DC

tag: stage IIIc

tag: age at diagnosis 70


title: 1760LB

tag: 5 year survivor

tag: age at diagnosis 40


title: 1574LC0

tag: no macroscopic residual tumor

tag: age at diagnosis 35


title: 1567DB

tag: age at diagnosis 68


title: zebrafish_48hpf_control_replicate4

city: San Francisco

first: Jason

middle: E.

last: Fish

state: CA

address: 1650 Owens Street

department: Gladstone Institute of Cardiovascular Disease

institute: J. David Gladstone Institute

description: zebrafish endothelial cells FACS-isolated from flk1:GFP, control

hyb_protocol: According to manufacturer's (Affymetrix) recommendations

data_processing: Raw intensities from CEL files were analyzed using Affymetrix Power Tool (APT, version 1.8.5) to generate robust multi-array average intensity in log2 scale for each probe set. The perfect match intensities for each probe set were corrected for background and quantile-normalized using a robust fit of linear models.

organism: Danio rerio

label_protocol: Amplified with NuGen WT-Ovation Pico amplication kit, labeled with the WT-Ovation cDNA Biotin Module V2

extract_protocol: Trizol RNA extraction

treatment_protocol: RNA isolated from 48 hpf fish

tag: zebrafish endothelial cell RNA


title: 1538DC

tag: age at diagnosis 62


title: zebrafish_48hpf_miR-126 MO-2_replicate3

description: zebrafish endothelial cells FACS-isolated from flk1:GFP, miR-126 MO#2

scan_protocol: According to manufacturer's (Affymetrix) recommendations

treatment_protocol: zebrafish embryos at the one cell stage were injected with miR-126 antisense morpholino (4 ng, Gene Tools), RNA isolated from 48 hpf fish


title: 1487DB

tag: fresh frozen tumour

tag: age at diagnosis 47


title: 1568DC

tag: deceased

tag: age at diagnosis 51


title: zebrafish_48hpf_miR-126 MO-1_replicate3

description: zebrafish endothelial cells FACS-isolated from flk1:GFP, miR-126 MO#1


title: zebrafish_48hpf_miR-126 MO-2_replicate4

source_name: zebrafish endothelial cells FACS-isolated from flk1:GFP, miR-126 MO#2


title: zebrafish_48hpf_miR-126 MO-1_replicate4

source_name: zebrafish endothelial cells FACS-isolated from flk1:GFP, miR-126 MO#1


title: 1426LB

tag: stage IIIab

tag: macroscopic residual tumor

tag: age at diagnosis 54


title: zebrafish_48hpf_control_replicate2

source_name: zebrafish endothelial cells FACS-isolated from flk1:GFP, control


title: 1242LC0

tag: post surgical chemo therapy farmorubicine, carboplatin and cyclophosphamide

tag: Reference


title: 1274LC

tag: stage IIIc

tag: age at diagnosis 65


title: zebrafish_48hpf_miR-126 MO-1_replicate2


title: zebrafish_48hpf_miR-126 MO-2_replicate1

treatment_protocol: zebrafish embryos were injected at the one cell stage with miR-126 antisense morpholino (4 ng, Gene-Tools), RNA isolated from 48 hpf fish


title: 1528DC

tag: age at diagnosis 50


title: zebrafish_48hpf_miR-126 MO-1_replicate1

treatment_protocol: zebrafish embryos were injected at the one-cell stae with miR-126 antisense morpholino (4 ng, Gene-Tools), RNA isolated from 48 hpf fish


title: 1180DB

tag: age at diagnosis 43


title: zebrafish_48hpf_miR-126 MO-2_replicate2


title: 1178LB0

tag: 5 year survivor

tag: no macroscopic residual tumor

tag: age at diagnosis 60


title: 1186DB0


title: 1035LA0

tag: age at diagnosis 36


title: 1177DB

tag: fresh frozen tumour

tag: age at diagnosis 55


title: 988LC0

tag: age at diagnosis 52


title: 1059LB0

tag: age at diagnosis 84


title: 918DB0

tag: deceased

tag: stage IIIab

tag: age at diagnosis 70


title: 1047LB

tag: macroscopic residual tumor

tag: age at diagnosis 44

tag: post surgical chemo therapy farmorubicine, carboplatin and cyclophosphamide


title: zebrafish_48hpf_control_replicate3

tag: zebrafish endothelial cell RNA


title: zebrafish_48hpf_control_replicate1

treatment_protocol: Uninjected control, 48 hpf

tag: Zebrafish endothelial RNA


title: 755LC

tag: stage IIIc

tag: age at diagnosis 77

tag: Reference


title: 789DC

tag: age at diagnosis 63


title: 742LC0

tag: 5 year survivor

tag: no macroscopic residual tumor

tag: age at diagnosis 49


title: 719DC

tag: fresh frozen tumour


title: 559DC

tag: age at diagnosis 75


title: 626DC

tag: deceased

tag: age at diagnosis 54


title: 541DC

tag: age at diagnosis 64


title: 662DC

tag: macroscopic residual tumor

tag: age at diagnosis 65


title: 452DC

tag: age at diagnosis 69

tag: post surgical chemo therapy farmorubicine, carboplatin and cyclophosphamide


title: 759DC

tag: age at diagnosis 52


title: 480DC0

tag: stage IIIc

tag: age at diagnosis 73


title: 462DB

tag: stage IIIab

tag: age at diagnosis 59

tag: Reference


title: 454LC

tag: 5 year survivor

tag: age at diagnosis 43


title: 436DC

tag: fresh frozen tumour

tag: age at diagnosis 56


title: 405LB

tag: age at diagnosis 50


title: 563LA

tag: age at diagnosis 62


title: 505DB

tag: deceased

tag: age at diagnosis 74


title: 272DC

tag: macroscopic residual tumor

tag: age at diagnosis 54


title: 193DC

tag: post surgical chemo therapy farmorubicine, carboplatin and cyclophosphamide


title: HUVEC_miR-126 antisense morpholino 72h_replicate3

description: Human umbilical vein endothelial cell, miR-126 antisense morpholino, 72h

hyb_protocol: Performed according to the manufacturer's (Affymetrix) recommendations

data_processing: Raw intensities from the CEL files were analyzed using Affymetrix Power Tool (APT, version 1.8.5) to generate robust multi-array average intensity in log2 scale for each probe set. The perfect match intensities for each probe set were corrected for background and quantile-normalized using a robust fit of linear models.

label_protocol: Ambion MessageAmp II-biotin enhanced kit (manufacturer's recommendations)

growth_protocol: Unstimulated

extract_protocol: Trizol extraction

treatment_protocol: Electroporated with miR-126 antisense morpholino (Gene-Tools, 15nmol), 72h

tag: Human umbilical vein endothelial cell RNA


title: HUVEC_control morpholino 72h_replicate3

description: Human umbilical vein endothelial cell, control morpholino, 72h

scan_protocol: Performed according to the manufacturer's (Affymetrix) recommendations

treatment_protocol: Electroporated with control morpholino (Gene-Tools, 15nmol), 72h


title: HUVEC_miR-126 antisense morpholino 72h_replicate2

source_name: Human umbilical vein endothelial cell, miR-126 antisense morpholino, 72h


title: 211DC

tag: stage IIIc

tag: age at diagnosis 70


title: 202DC


title: HUVEC_miR-126 antisense morpholino 72h_replicate1


title: 164DC

tag: age at diagnosis 73


title: HUVEC_control morpholino 72h_replicate2

source_name: Human umbilical vein endothelial cell, control morpholino, 72h


title: 123DC


title: 134LC

tag: age at diagnosis 60


title: 83LC

tag: age at diagnosis 58

tag: Reference


title: 46LB0

tag: 5 year survivor

tag: stage IIIab

tag: no macroscopic residual tumor

tag: age at diagnosis 43


title: HUVEC_control morpholino 72h_replicate1


title: 99LC0

tag: fresh frozen tumour

tag: age at diagnosis 72


title: 47DC

tag: deceased

tag: age at diagnosis 56


title: 198DC

tag: macroscopic residual tumor

tag: age at diagnosis 67


title: 76DC

tag: age at diagnosis 76

tag: post surgical chemo therapy farmorubicine, carboplatin and cyclophosphamide


title: 45LA0


title: sys69A 022404.txt~Florence - SYS

status: Public on Aug 11 2008

city: Dallas

first: Damien

last: Chaussabel

state: TX

address: 3434 Live Oak

institute: Baylor Institute for Immunology Research

description: A male subject diagnosed with JIA Systemic Onset where age 16 yrs, when sample taken.

scan_protocol: GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 System.

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.

source_name: sys69A 022404, Florence - SYS

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol.

extract_protocol: RNeasy Mini

tag: Age

value: 16 yrs, when sample taken.

tag: Gender

value: M

tag: Ethnicity

value: Not Hispanic or Latino

tag: Race

value: Black or African American

tag: Illness

value: JIA Systemic Onset


title: sys79A 101604.txt~Florence - SYS

description:
A female subject diagnosed with SLE where age 1 yr, when sample taken.

CEL file not available for this chip (corrupted)

source_name: sys79A 101604, Florence - SYS

value: 1 yr, when sample taken.

value: F

value: (Ethnicity Not Reported)

value: Asian

value: SLE


title: sys81A.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 6 yrs, when sample taken.

source_name: sys81A, Florence - SYS

value: 6 yrs, when sample taken.


title: 26DC

tag: stage IIIc

tag: age at diagnosis 41

tag: Reference


title: Control LXIDN transduced CD34++ cells

city: Modena

first: CLAUDIA

last: GEMELLI

state: Modena

address: Via Campi 287

department: Biomedical Science

country: Italy

institute: University of Modena and Reggio Emilia

description: Synthesis of biotinylated cRNA targets, arrays hybridization (Mouse430_2 GeneChip, Affymetrix, Santa Clara,CA), staining and scanning were performed using Affymetrix standard protocols starting from 100 ng of total RNA.

hyb_protocol: Affymetrix Human HG-U133A GeneChip arrays hybridization and staining was performed using Affymetrix standard protocols (Affymetrix, Santa Clara,CA).The fragmented cRNA was then hybridized to an identical lot of Affymetrix Human HG-U133A GeneChip arrays for 16 hours. GeneChips were washed and stained using the instrument’s standard Eukaryotic GE WS2v4 protocol, using antibody-mediated signal amplification.

scan_protocol: GeneChip were finally scanned using the Affymetrix GeneChip scanner 3000, enabled for High-Resolution Scanning.

data_processing: Scaling to TGT value=90. The GeneChip-Operating-Software (GCOS) absolute analysis algorithm was used to determine the mRNA expression levels (Signal), while the GCOS comparison analysis algorithm was used in order to compare gene expression levels between two samples.

source_name: CB CD34+ progenitors cells

label_protocol: RNA pools (100 ng) of LXIDN transduced CD34+ cells, obtained from three independent experiments, were converted in labelled cRNA according with the “Two cycle” protocol advised by Affymetrix. cRNA has been used to hybridise Affymetrix HG-U133A GeneChip arrays

growth_protocol: Human CD34+ hematopoietic stem / progenitor cells were purified from umbilical cord blood (CB) samples and maintained in liquid culture for two weeks. During the initial 5 days of culture, necessary for retroviral transduction, these cells were seeded at a 5-10 x 10^4 / ml density in IMDM (Euroclone) containing 10% Human Serum (HS) (Biowhittaker) and early acting human hematopoietic cytokines: 50 ng/ml Stem Cell Factor (SCF) and Flt3-ligand (Flt3-l), 20 ng/ml Thrombopoietin (TPO), 10 ng/ml Interleukin-6 (IL-6) and Interleukin-3 (IL-3) (R&D Systems, Minneapolis, MN). The subsequent phase of culture was accomplished in similar conditions without TPO and in the presence of 20 % FBS.

extract_protocol: Total RNA was extracted from the various analyzed cell populations by means of the Qiagen total RNA purification kits as recommended by the manufacturer (Qiagen, Valencia, CA). RNA integrity and concentration was then verified by the Bio-Analyzer technique

treatment_protocol: CD34+ hematopoietic progenitors, pre-activated for 48 hours in liquid culture, were transduced by two cycles of infection (12 h each) with viral supernatant on retronectin-coated plates (10 ug / cm2). NGFR purification of transduced cells was performed after a 48 hours post-transduction incubation using a purified mouse anti - human p75 - NGFR monoclonal antibody (MoAb) and tiny FACS-compatible magnetic nanoparticles in a column-free magnetic system [EasySepTM “Do-It-Your Self” Selection Kit (Stem cells Technologies; Vancouver, BC, Canada)] following the manufacturer guidelines.

tag: CD34+ hematopoietic progenitors purified from cord blood (CB).

tag: Human CD34+ cells were purified from umbilical cord blood samples, collected after normal deliveries, according to the institutional guidelines for discarded material. Mononuclear cells were isolated by Ficoll-Hypaque (Lymphoprep; Nycomed Pharma, Oslo, Norway) gradient separation, washed twice with PBS, and then CD34+ cells separated using magnetic cell sorting procedure (EasySep Human CD34+ positive selection kit, StemCell Techonologies Inc.; Vancouver, Canada). CD34+ cell purity assessed by flow cytometry were always >95%.


title: sys78A 101304.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 5 yrs, when sample taken.

source_name: sys78A 101304, Florence - SYS

value: 5 yrs, when sample taken.

value: White


title: sys68A 111004.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 6 yrs, when sample taken.

source_name: sys68A 111004, Florence - SYS

value: Hispanic or Latino

value: (Race Not Reported)


title: sys49A 062002.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 11 yrs, when sample taken.

source_name: sys49A 062002, Florence - SYS

value: 11 yrs, when sample taken.


title: sys70A 052102.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 4 yrs, when sample taken.

source_name: sys70A 052102, Florence - SYS

value: 4 yrs, when sample taken.


title: sys62A 033104.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 9 yrs, when sample taken.

source_name: sys62A 033104, Florence - SYS

value: 9 yrs, when sample taken.


title: sys51A 022003.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 2 yrs, when sample taken.

source_name: sys51A 022003, Florence - SYS

value: 2 yrs, when sample taken.


title: sys68A 011304.txt~Florence - SYS

source_name: sys68A 011304, Florence - SYS


title: sys47A 121003.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 10 yrs, when sample taken.

source_name: sys47A 121003, Florence - SYS

value: 10 yrs, when sample taken.

value: M


title: sys53A 050603.txt~Florence - SYS

source_name: sys53A 050603, Florence - SYS

value: Not Hispanic or Latino

value: JIA Systemic Onset


title: sys52A 050403.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 14 yrs, when sample taken.

source_name: sys52A 050403, Florence - SYS

value: 14 yrs, when sample taken.

value: F


title: sys47A 033104.txt~Florence - SYS

source_name: sys47A 033104, Florence - SYS


title: sys51A 012704.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 3 yrs, when sample taken.

source_name: sys51A 012704, Florence - SYS

value: 3 yrs, when sample taken.


title: sys37A 110502.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 8 yrs, when sample taken.

source_name: sys37A 110502, Florence - SYS

value: 8 yrs, when sample taken.


title: 489DC

description: Comparison of ovarian tumors of 5 year survivors to deceased patients

source_name: serous ovarian adenocarcinoma

tag: fresh frozen tumour

tag: age at diagnosis 64

source_name: Universal Human Reference RNA purchased from Stratagene


title: sys39A 111202.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 5 yrs, when sample taken.

source_name: sys39A 111202, Florence - SYS


title: sys44A 112102.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 13 yrs, when sample taken.

source_name: sys44A 112102, Florence - SYS

value: 13 yrs, when sample taken.

value: Black or African American


title: sys56A 021804.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 4 yrs, when sample taken.

source_name: sys56A 021804, Florence - SYS


title: sys74A 110304.txt~Florence - SYS

source_name: sys74A 110304, Florence - SYS


title: sys40A 060202.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 13 yrs, when sample taken.

source_name: sys40A 060202, Florence - SYS

value: White


title: sys35A 091902.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 12 yrs, when sample taken.

source_name: sys35A 091902, Florence - SYS

value: 12 yrs, when sample taken.


title: sys29A 081302.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 15 yrs, when sample taken.

source_name: sys29A 081302, Florence - SYS

value: 15 yrs, when sample taken.


title: LHoxA10IDN transduced CD34+ cells

description: Synthesis of biotinylated cRNA targets, arrays hybridization staining and scanning were performed using Affymetrix standard protocols starting from 100 ng of total RNA.

source_name: Cord Blood CD34++ hematopoeitic progenitors

label_protocol: RNA pools (100 ng) of LHoxA10IDN transduced CD34+ cells, obtained from three independent experiments, were converted in labelled cRNA according with the “Two cycle” protocol advised by Affymetrix. cRNA has been used to hybridise Affymetrix HG-U133A GeneChip arrays

extract_protocol: Total RNA was extracted from the analyzed cell population by means of the Qiagen total RNA purification kits as recommended by the manufacturer (Qiagen, Valencia, CA). RNA integrity and concentration was then verified by the Bio-Analyzer technique (Applied Biosystem, Foster City, CA, USA).


title: sys27A 111002.txt~Florence - SYS

source_name: sys27A 111002, Florence - SYS


title: sys32A 111402.txt~Florence - SYS

source_name: sys32A 111402, Florence - SYS


title: sys33A 092902.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 17 yrs, when sample taken.

source_name: sys33A 092902, Florence - SYS

value: 17 yrs, when sample taken.

value: Hispanic or Latino

value: (Race Not Reported)


title: sys25A 092404.txt~Florence - SYS

source_name: sys25A 092404, Florence - SYS


title: sys24A 072302.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 5 yrs, when sample taken.

source_name: sys24A 072302, Florence - SYS

value: 5 yrs, when sample taken.


title: sys20A 071802.txt~Florence - SYS

source_name: sys20A 071802, Florence - SYS

value: 9 yrs, when sample taken.


title: sys28A 081302.txt~Florence - SYS

source_name: sys28A 081302, Florence - SYS

value: 2 yrs, when sample taken.


title: sys22A 052802.txt~Florence - SYS

source_name: sys22A 052802, Florence - SYS

value: Not Hispanic or Latino


title: sys21A 111704.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 6 yrs, when sample taken.

source_name: sys21A 111704, Florence - SYS

value: 6 yrs, when sample taken.

value: JIA Systemic Onset


title: sys31A 090802.txt~Florence - SYS

source_name: sys31A 090802, Florence - SYS

value: F


title: sys16A 070202.txt~Florence - SYS

source_name: sys16A 070202, Florence - SYS

value: 4 yrs, when sample taken.


title: sys12A 022704.txt~Florence - SYS

source_name: sys12A 022704, Florence - SYS


title: sys12A 062702.txt~Florence - SYS

source_name: sys12A 062702, Florence - SYS


title: sys06A 053002.txt~Florence - SYS

source_name: sys06A 053002, Florence - SYS

value: Asian


title: sys13A 090304.txt~Florence - SYS

source_name: sys13A 090304, Florence - SYS


title: sys01A 080402.txt~Florence - SYS

source_name: sys01A 080402, Florence - SYS


title: sys13A 063002.txt~Florence - SYS

source_name: sys13A 063002, Florence - SYS


title: sys21A 111402.txt~Florence - SYS

source_name: sys21A 111402, Florence - SYS


title: sys23A 072302.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 7 yrs, when sample taken.

source_name: sys23A 072302, Florence - SYS

value: 7 yrs, when sample taken.

value: M


title: sys02A 052802.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 11 yrs, when sample taken.

source_name: sys02A 052802, Florence - SYS

value: 11 yrs, when sample taken.

value: White


title: sys15A 070202.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 2 yrs, when sample taken.

source_name: sys15A 070202, Florence - SYS


title: sys19A 051602.txt~Florence - SYS

source_name: sys19A 051602, Florence - SYS

value: 3 yrs, when sample taken.


title: RET1323Froz.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 45 yrs, when sample taken.

source_name: RET1323Froz, liver-transplant-AB-chip

value: 45 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: Hepatitis C


title: Lupus_preA.txt~Lynda SLE\A-chips

description:
A subject of unknown gender diagnosed with SLE where age not reported.

CEL file not available for this chip (corrupted)

source_name: S_preA, Lynda SLE\A-chips

value: (Age not reported)

value: U

value: (Race Not Reported)

value: SLE


title: RET1340Froz.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Laennec's Cirrhosis where age 50 yrs, when sample taken.

source_name: RET1340Froz, liver-transplant-AB-chip

value: 50 yrs, when sample taken.

value: Laennec's Cirrhosis


title: RET 1847.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Laennec's Cirrhosis where age 53 yrs, when sample taken.

source_name: RET 1847, liver-transplant-AB-chip

value: 53 yrs, when sample taken.


title: RET 1854.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 50 yrs, when sample taken.

source_name: RET 1854, liver-transplant-AB-chip


title: RET 1845.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Primary Biliary Cirrhosis where age 44 yrs, when sample taken.

source_name: RET 1845, liver-transplant-AB-chip

value: 44 yrs, when sample taken.

value: F

value: Primary Biliary Cirrhosis


title: RET 1841.txt~liver-transplant-AB-chip

description: A male subject diagnosed with PSC-UC where age 52 yrs, when sample taken.

source_name: RET 1841, liver-transplant-AB-chip

value: 52 yrs, when sample taken.

value: M

value: PSC-UC


title: RET 1706.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Laennec's Cirrhosis where age 57 yrs, when sample taken.

source_name: RET 1706, liver-transplant-AB-chip

value: 57 yrs, when sample taken.


title: RET 1843.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 48 yrs, when sample taken.

source_name: RET 1843, liver-transplant-AB-chip

value: 48 yrs, when sample taken.


title: RET 1714.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Nonalcoholic Steatohepatitis where age 63 yrs, when sample taken.

source_name: RET 1714, liver-transplant-AB-chip

value: 63 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: Nonalcoholic Steatohepatitis


title: RET 1839.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Cryptogenic where age 56 yrs, when sample taken.

source_name: RET 1839, liver-transplant-AB-chip

value: 56 yrs, when sample taken.

value: Cryptogenic


title: RET 1814.txt~liver-transplant-AB-chip

source_name: RET 1814, liver-transplant-AB-chip

value: 45 yrs, when sample taken.

value: (Race Not Reported)

value: Hepatitis C


title: RET 1771.txt~liver-transplant-AB-chip

description:
A female subject diagnosed with Hepatitis C where age 42 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: RET 1771, liver-transplant-AB-chip

value: 42 yrs, when sample taken.


title: RET 1700.txt~liver-transplant-AB-chip

description:
A male subject diagnosed with Hepatitis C where age 53 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: RET 1700, liver-transplant-AB-chip

value: 53 yrs, when sample taken.


title: RET 1754.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Primary Sclerosing Cholangitis where age 51 yrs, when sample taken.

source_name: RET 1754, liver-transplant-AB-chip

value: 51 yrs, when sample taken.

value: F

value: Primary Sclerosing Cholangitis


title: RET 1701.txt~liver-transplant-AB-chip

source_name: RET 1701, liver-transplant-AB-chip

value: M


title: RET 1710.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Cyrptogenic where age 50 yrs, when sample taken.

source_name: RET 1710, liver-transplant-AB-chip

value: 50 yrs, when sample taken.

value: Cyrptogenic


title: RET 1805.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Laennec's Cirrhosis and Postnecrotic Cirrhosis Type C where age 42 yrs, when sample taken.

source_name: RET 1805, liver-transplant-AB-chip


title: RET 1838.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Autoimmune Hepatitis where age 66 yrs, when sample taken.

source_name: RET 1838, liver-transplant-AB-chip

value: 66 yrs, when sample taken.

value: Autoimmune Hepatitis


title: RET 1689.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 43 yrs, when sample taken.

source_name: RET 1689, liver-transplant-AB-chip

value: 43 yrs, when sample taken.

value: (Ethnicity Not Reported)


title: RET 1974.txt~liver-transplant-AB-chip

description:
A male subject diagnosed with Hepatitis C where age 54 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: RET 1974, liver-transplant-AB-chip

value: 54 yrs, when sample taken.


title: RET 1702.txt~liver-transplant-AB-chip

source_name: RET 1702, liver-transplant-AB-chip

value: 48 yrs, when sample taken.


title: RET 1684.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Mx. Carcinoid where age 65 yrs, when sample taken.

source_name: RET 1684, liver-transplant-AB-chip

value: 65 yrs, when sample taken.

value: Mx. Carcinoid


title: RET 1686.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis B where age 59 yrs, when sample taken.

source_name: RET 1686, liver-transplant-AB-chip

value: 59 yrs, when sample taken.

value: (Race Not Reported)

value: Hepatitis B


title: RET 1673.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Hepatitis B where age 60 yrs, when sample taken.

source_name: RET 1673, liver-transplant-AB-chip

value: 60 yrs, when sample taken.


title: RET 1355.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Cryptogenic where age 61 yrs, when sample taken.

source_name: RET 1355, liver-transplant-AB-chip

value: 61 yrs, when sample taken.

value: Cryptogenic


title: RET 1364.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 42 yrs, when sample taken.

source_name: RET 1364, liver-transplant-AB-chip

value: 42 yrs, when sample taken.

value: M

value: Hepatitis C


title: sys14A 063002.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 13 yrs, when sample taken.

source_name: sys14A 063002, Florence - SYS

value: 13 yrs, when sample taken.

value: Not Hispanic or Latino

value: White

value: JIA Systemic Onset


title: RET 1348.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Fulminant Hepatic Failure where age 64 yrs, when sample taken.

source_name: RET 1348, liver-transplant-AB-chip

value: 64 yrs, when sample taken.

value: F

value: (Ethnicity Not Reported)

value: Fulminant Hepatic Failure


title: RET 1329.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Laennec's Cirrhosis where age 51 yrs, when sample taken.

source_name: RET 1329, liver-transplant-AB-chip

value: 51 yrs, when sample taken.

value: Laennec's Cirrhosis


title: RET 1323.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 45 yrs, when sample taken.

source_name: RET 1323, liver-transplant-AB-chip

value: 45 yrs, when sample taken.

value: (Race Not Reported)


title: sys79B 101604.txt~Florence - SYS

description:
A female subject diagnosed with SLE where age 1 yr, when sample taken.

CEL file not available for this chip (corrupted)

source_name: sys79B 101604, Florence - SYS

value: 1 yr, when sample taken.

value: Asian

value: SLE


title: sys81B.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 6 yrs, when sample taken.

source_name: sys81B, Florence - SYS

value: 6 yrs, when sample taken.

value: M

value: Black or African American


title: RET 1413.txt~liver-transplant-AB-chip

description:
A male subject diagnosed with Laennec's Cirrhosis where age 52 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: RET 1413, liver-transplant-AB-chip

value: 52 yrs, when sample taken.


title: RET 1308.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Primary Biliary Cirrhosis where age 66 yrs, when sample taken.

source_name: RET 1308, liver-transplant-AB-chip

value: 66 yrs, when sample taken.

value: Primary Biliary Cirrhosis


title: sys70B 052102.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 4 yrs, when sample taken.

source_name: sys70B 052102, Florence - SYS

value: 4 yrs, when sample taken.

value: Not Hispanic or Latino

value: JIA Systemic Onset


title: RET 1297.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 48 yrs, when sample taken.

source_name: RET 1297, liver-transplant-AB-chip

value: 48 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: Hepatitis C


title: sys68B 111004.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 6 yrs, when sample taken.

source_name: sys68B 111004, Florence - SYS

value: F

value: Hispanic or Latino


title: RET 1292.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 47 yrs, when sample taken.

source_name: RET 1292, liver-transplant-AB-chip

value: 47 yrs, when sample taken.

value: (Race Not Reported)


title: sys69B 022404.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 16 yrs, when sample taken.

source_name: sys69B 022404, Florence - SYS

value: 16 yrs, when sample taken.


title: Lupus_110701A.txt~Lynda SLE\A-chips

description: A male subject diagnosed with SLE where age 16 yrs, when sample taken.

source_name: RA_110701A, Lynda SLE\A-chips

value: Other

value: SLE


title: Lupus_110102A.txt~Lynda SLE\A-chips

description: A female subject diagnosed with SLE where age 9 yrs, when sample taken.

source_name: MJ_110102A, Lynda SLE\A-chips

value: 9 yrs, when sample taken.

value: Black or African American


title: RET 0655.txt~liver-transplant-AB-chip

description: A subject of unknown gender whose illness is not reported where age not reported.

source_name: RET 0655, liver-transplant-AB-chip

value: (Age not reported)

value: U

value: (Illness not reported).


title: RET 1325.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 50 yrs, when sample taken.

source_name: RET 1325, liver-transplant-AB-chip

value: 50 yrs, when sample taken.

value: M


title: Lupus_041502A.txt~Lynda SLE\A-chips

description: A male subject diagnosed with SLE where age 9 yrs, when sample taken.

source_name: OS_041502A, Lynda SLE\A-chips

value: Not Hispanic or Latino


title: Mel 65 PreInj U133A.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1b where age 62 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 65 PreInj U133A, melanoma-AB-chip

value: 62 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: Melanoma M1b


title: sys78B 101304.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 5 yrs, when sample taken.

source_name: sys78B 101304, Florence - SYS

value: 5 yrs, when sample taken.

value: White

value: JIA Systemic Onset


title: RET 1340.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Laennec's Cirrhosis where age 50 yrs, when sample taken.

source_name: RET 1340, liver-transplant-AB-chip

value: (Race Not Reported)

value: Laennec's Cirrhosis


title: sys53B 050603.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 9 yrs, when sample taken.

source_name: sys53B 050603, Florence - SYS

value: F


title: sys68B 011304.txt~Florence - SYS

source_name: sys68B 011304, Florence - SYS

value: 6 yrs, when sample taken.

value: Hispanic or Latino


title: RET 1322.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Hepatitis C where age 32 yrs, when sample taken.

source_name: RET 1322, liver-transplant-AB-chip

value: 32 yrs, when sample taken.

value: Hepatitis C


title: Mel 59 PreInj U133A.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1c where age 61 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 59 PreInj U133A, melanoma-AB-chip

value: 61 yrs, when sample taken.

value: Melanoma M1c


title: sys56B 021804.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 4 yrs, when sample taken.

source_name: sys56B 021804, Florence - SYS

value: 4 yrs, when sample taken.


title: Mel 63 PreInj U133A.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1b where age 75 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 63 PreInj U133A, melanoma-AB-chip

value: 75 yrs, when sample taken.

value: M


title: sys74B 110304.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 10 yrs, when sample taken.

source_name: sys74B 110304, Florence - SYS

value: 10 yrs, when sample taken.


title: Mel 62 PreInj U133A.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1b where age 46 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 62 PreInj U133A, melanoma-AB-chip

value: 46 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: Melanoma M1b


title: Mel 58 PreInj U133A.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1c where age 67 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 58 PreInj U133A, melanoma-AB-chip

value: 67 yrs, when sample taken.


title: sys62B 033104.txt~Florence - SYS

source_name: sys62B 033104, Florence - SYS

value: 9 yrs, when sample taken.

value: (Race Not Reported)

value: JIA Systemic Onset


title: sys49B 062002.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 11 yrs, when sample taken.

source_name: sys49B 062002, Florence - SYS

value: 11 yrs, when sample taken.

value: F

value: Not Hispanic or Latino

value: White


title: sys47B 121003.txt~Florence - SYS

source_name: sys47B 121003, Florence - SYS

value: Hispanic or Latino


title: sys51B 022003.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 2 yrs, when sample taken.

source_name: sys51B 022003, Florence - SYS

value: 2 yrs, when sample taken.


title: Mel 56 PreInj U133A.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1c where age 71 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 56 PreInj U133A, melanoma-AB-chip

value: 71 yrs, when sample taken.

value: Melanoma M1c


title: Mel 64 PreInj U133A.txt~melanoma-AB-chip

description:
A female subject diagnosed with Melanoma M1b where age 53 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 64 PreInj U133A, melanoma-AB-chip

value: 53 yrs, when sample taken.


title: sys44B 112102.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 13 yrs, when sample taken.

source_name: sys44B 112102, Florence - SYS

value: 13 yrs, when sample taken.

value: Black or African American


title: sys47B 033104.txt~Florence - SYS

source_name: sys47B 033104, Florence - SYS

value: 10 yrs, when sample taken.

value: M


title: sys52B 050403.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 14 yrs, when sample taken.

source_name: sys52B 050403, Florence - SYS

value: 14 yrs, when sample taken.


title: Mel 60 PreInj U133A.txt~melanoma-AB-chip

description:
A male subject diagnosed with Melanoma M1c where age 41 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 60 PreInj U133A, melanoma-AB-chip

value: 41 yrs, when sample taken.

value: (Ethnicity Not Reported)


title: sys42B 111402.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 11 yrs, when sample taken.

source_name: sys42B 111402, Florence - SYS

value: JIA Systemic Onset


title: sys51B 012704.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 3 yrs, when sample taken.

source_name: sys51B 012704, Florence - SYS

value: 3 yrs, when sample taken.


title: Mel 57 PreInj U133A.txt~melanoma-AB-chip

description:
A female subject diagnosed with Melanoma M1b where age 36 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 57 PreInj U133A, melanoma-AB-chip

value: 36 yrs, when sample taken.

value: F

value: (Race Not Reported)

value: Melanoma M1b


title: Mel 61 PreInj U133A.txt~melanoma-AB-chip

description:
A female subject diagnosed with Melanoma M1a where age 54 yrs, when sample taken.

CEL file not available for this chip (corrupted)

source_name: Mel 61 PreInj U133A, melanoma-AB-chip

value: 54 yrs, when sample taken.

value: Melanoma M1a


title: MEL 54 PRE U133A.txt~melanoma-AB-chip

description: A male subject diagnosed with Melanoma M1b where age 50 yrs, when sample taken.

source_name: MEL 54 PRE U133A, melanoma-AB-chip

value: 50 yrs, when sample taken.


title: sys39B 111202.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 5 yrs, when sample taken.

source_name: sys39B 111202, Florence - SYS

value: 5 yrs, when sample taken.

value: Hispanic or Latino


title: sys40B 060202.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 13 yrs, when sample taken.

source_name: sys40B 060202, Florence - SYS

value: 13 yrs, when sample taken.

value: Not Hispanic or Latino

value: White


title: MEL 51 PRE U133A.txt~melanoma-AB-chip

description: A male subject diagnosed with Melanoma M1c where age 56 yrs, when sample taken.

source_name: MEL 51 PRE U133A, melanoma-AB-chip

value: 56 yrs, when sample taken.

value: M

value: Melanoma M1c


title: MEL 52 PRE U133A.txt~melanoma-AB-chip

description: A male subject diagnosed with Melanoma M1c where age 42 yrs, when sample taken.

source_name: MEL 52 PRE U133A, melanoma-AB-chip

value: 42 yrs, when sample taken.

value: (Ethnicity Not Reported)


title: MEL 50 PRE U133A.txt~melanoma-AB-chip

description: A male subject diagnosed with Melanoma M1c where age 52 yrs, when sample taken.

source_name: MEL 50 PRE U133A, melanoma-AB-chip

value: 52 yrs, when sample taken.


title: MEL 49 PRE  U133A.txt~melanoma-AB-chip

description: A male subject diagnosed with Melanoma M1b where age 71 yrs, when sample taken.

source_name: MEL 49 PRE  U133A, melanoma-AB-chip

value: 71 yrs, when sample taken.


title: sys35B 091902.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 12 yrs, when sample taken.

source_name: sys35B 091902, Florence - SYS

value: 12 yrs, when sample taken.

value: F

value: JIA Systemic Onset


title: MEL 48 PRE  U133A.txt~melanoma-AB-chip

description: A male subject diagnosed with Melanoma M1b where age 68 yrs, when sample taken.

source_name: MEL 48 PRE  U133A, melanoma-AB-chip

value: 68 yrs, when sample taken.

value: (Race Not Reported)

value: Melanoma M1b


title: sys37B 110502.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 8 yrs, when sample taken.

source_name: sys37B 110502, Florence - SYS

value: 8 yrs, when sample taken.


title: MEL 47 PRE U133A.txt~melanoma-AB-chip

description: A female subject diagnosed with Melanoma M1c where age 35 yrs, when sample taken.

source_name: MEL 47 PRE U133A, melanoma-AB-chip

value: 35 yrs, when sample taken.


title: sys32B 111402.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 9 yrs, when sample taken.

source_name: sys32B 111402, Florence - SYS

value: 9 yrs, when sample taken.

value: Not Hispanic or Latino


title: sys33B 092902.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 17 yrs, when sample taken.

source_name: sys33B 092902, Florence - SYS

value: 17 yrs, when sample taken.

value: Hispanic or Latino


title: sys29B 081302.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 15 yrs, when sample taken.

source_name: sys29B 081302, Florence - SYS

value: 15 yrs, when sample taken.

value: Black or African American


title: MEL 46 PRE  U133A.txt~melanoma-AB-chip

description: A female subject diagnosed with Melanoma M1c where age 47 yrs, when sample taken.

source_name: MEL 46 PRE  U133A, melanoma-AB-chip

value: 47 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: Melanoma M1c


title: sys31B 090802.txt~Florence - SYS

source_name: sys31B 090802, Florence - SYS

value: 5 yrs, when sample taken.

value: White


title: sys27B 111002.txt~Florence - SYS

source_name: sys27B 111002, Florence - SYS

value: M

value: JIA Systemic Onset


title: MEL 44 PRE U133A.txt~melanoma-AB-chip

description: A female subject diagnosed with Melanoma M1c where age 68 yrs, when sample taken.

source_name: MEL 44 PRE U133A, melanoma-AB-chip

value: 68 yrs, when sample taken.

value: F

value: (Race Not Reported)


title: sys28B 081302.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 2 yrs, when sample taken.

source_name: sys28B 081302, Florence - SYS

value: 2 yrs, when sample taken.


title: sys24B 072302.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 5 yrs, when sample taken.

source_name: sys24B 072302, Florence - SYS


title: sys25B 092404.txt~Florence - SYS

source_name: sys25B 092404, Florence - SYS


title: MEL 36 PRE U133A.txt~melanoma-AB-chip

description: A female subject diagnosed with Melanoma M1b where age 69 yrs, when sample taken.

source_name: MEL 36 PRE U133A, melanoma-AB-chip

value: 69 yrs, when sample taken.

value: Melanoma M1b


title: MEL 32 PREU133A.txt~melanoma-AB-chip

description: A male subject diagnosed with Melanoma M1b where age 56 yrs, when sample taken.

source_name: MEL 32 PREU133A, melanoma-AB-chip

value: 56 yrs, when sample taken.


title: sys23B 072302.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 7 yrs, when sample taken.

source_name: sys23B 072302, Florence - SYS

value: 7 yrs, when sample taken.

value: Not Hispanic or Latino


title: sys21B 111704.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 6 yrs, when sample taken.

source_name: sys21B 111704, Florence - SYS

value: 6 yrs, when sample taken.

value: Black or African American


title: MEL 43 PRE U133A.txt~melanoma-AB-chip

description: A male subject diagnosed with Melanoma M1a where age 60 yrs, when sample taken.

source_name: MEL 43 PRE U133A, melanoma-AB-chip

value: 60 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: Melanoma M1a


title: MEL 30 PRE U133A.txt~melanoma-AB-chip

description: A female subject diagnosed with Melanoma M1c where age 58 yrs, when sample taken.

source_name: MEL 30 PRE U133A, melanoma-AB-chip

value: 58 yrs, when sample taken.

value: Melanoma M1c


title: MEL 40 PRE U133A.txt~melanoma-AB-chip

description: A female subject diagnosed with Melanoma M1c where age 43 yrs, when sample taken.

source_name: MEL 40 PRE U133A, melanoma-AB-chip

value: 43 yrs, when sample taken.


title: MEL 34 PRE U133A.txt~melanoma-AB-chip

description: A female subject diagnosed with Melanoma M1b where age 28 yrs, when sample taken.

source_name: MEL 34 PRE U133A, melanoma-AB-chip

value: 28 yrs, when sample taken.


title: sys22B 052802.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 5 yrs, when sample taken.

source_name: sys22B 052802, Florence - SYS

value: 5 yrs, when sample taken.

value: F

value: White

value: JIA Systemic Onset


title: MEL 45 PRE U133A.txt~melanoma-AB-chip

description: A female subject diagnosed with Melanoma M1a where age 53 yrs, when sample taken.

source_name: MEL 45 PRE U133A, melanoma-AB-chip

value: 53 yrs, when sample taken.

value: (Race Not Reported)


title: MEL 35 PRE U133A.txt~melanoma-AB-chip

description: A male subject diagnosed with Melanoma M1a where age 29 yrs, when sample taken.

source_name: MEL 35 PRE U133A, melanoma-AB-chip

value: 29 yrs, when sample taken.

value: M


title: sys21B 111402.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 4 yrs, when sample taken.

source_name: sys21B 111402, Florence - SYS

value: 4 yrs, when sample taken.

value: Not Hispanic or Latino


title: MEL 28 PRE U133A.txt~melanoma-AB-chip

description:
A subject of unknown gender diagnosed with Melanoma where age not reported.

CEL file not available for this chip (corrupted)

source_name: MEL 28 PRE U133A, melanoma-AB-chip

value: (Age not reported)

value: U

value: Melanoma


title: sys20B 071802.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 9 yrs, when sample taken.

source_name: sys20B 071802, Florence - SYS

value: 9 yrs, when sample taken.


title: sys13B 090304.txt~Florence - SYS

source_name: sys13B 090304, Florence - SYS

value: Black or African American


title: sys16B 070202.txt~Florence - SYS

source_name: sys16B 070202, Florence - SYS

value: Hispanic or Latino


title: MEL 26 PRE U133A.txt~melanoma-AB-chip

description: A female subject diagnosed with Melanoma M1c where age 52 yrs, when sample taken.

source_name: MEL 26 PRE U133A, melanoma-AB-chip

value: 52 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: Melanoma M1c


title: sys14B 063002.txt~Florence - SYS

description: A male subject diagnosed with JIA Systemic Onset where age 13 yrs, when sample taken.

source_name: sys14B 063002, Florence - SYS

value: 13 yrs, when sample taken.

value: White


title: MEL 24 PREU133A.txt~melanoma-AB-chip

description: A male subject diagnosed with Melanoma M1c where age 53 yrs, when sample taken.

source_name: MEL 24 PREU133A, melanoma-AB-chip

value: 53 yrs, when sample taken.


title: MEL 29 PRE U133A.txt~melanoma-AB-chip

description: A male subject diagnosed with Melanoma M1c where age 41 yrs, when sample taken.

source_name: MEL 29 PRE U133A, melanoma-AB-chip

value: 41 yrs, when sample taken.

value: (Race Not Reported)


title: MEL 23 PRE U133A.txt~melanoma-AB-chip

description: A female subject diagnosed with Melanoma M1a where age 61 yrs, when sample taken.

source_name: MEL 23 PRE U133A, melanoma-AB-chip

value: 61 yrs, when sample taken.

value: F

value: Melanoma M1a


title: sys15B 070202.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 2 yrs, when sample taken.

source_name: sys15B 070202, Florence - SYS

value: 2 yrs, when sample taken.

value: JIA Systemic Onset


title: INF315.txt~STAPH

description: A female subject diagnosed with Cellulitis where age 3 yrs, when sample taken.

source_name: INF315, STAPH

extract_protocol: RNeasy mini

value: 3 yrs, when sample taken.

value: Cellulitis

tag: Pathogen

value: S. aureus, MRSA


title: sys13B 063002.txt~Florence - SYS

source_name: sys13B 063002, Florence - SYS

value: 4 yrs, when sample taken.

value: Not Hispanic or Latino

value: Black or African American


title: INF168.txt~Ecoli

description: A female subject diagnosed with Urinary Tract Infection where age 3 mths, when sample taken.

source_name: INF168, Ecoli

value: 3 mths, when sample taken.

value: Urinary Tract Infection


title: INF179.txt~STAPH

description: A male subject diagnosed with Endocarditis/bacteremia where age 12 yrs, when sample taken.

source_name: INF179, STAPH

value: 12 yrs, when sample taken.

value: M

value: White

value: Endocarditis/bacteremia


title: sys12B 062702.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 6 yrs, when sample taken.

source_name: sys12B 062702, Florence - SYS

value: 6 yrs, when sample taken.


title: MEL 27 PREU133A.txt~melanoma-AB-chip

description: A female subject diagnosed with Melanoma M1a where age 54 yrs, when sample taken.

source_name: MEL 27 PREU133A, melanoma-AB-chip

value: 54 yrs, when sample taken.

value: F

value: (Ethnicity Not Reported)

value: (Race Not Reported)


title: INF161.txt~Ecoli

description: A male subject diagnosed with Urinary Tract Infection where age 1.7 mths, when sample taken.

source_name: INF161, Ecoli

value: 1.7 mths, when sample taken.

value: Hispanic or Latino


title: INF206.txt~STAPH

description: A female subject diagnosed with Abscess where age 1 yr, when sample taken.

source_name: INF206, STAPH

value: 1 yr, when sample taken.

value: Abscess

value: S. aureus, MSSA


title: sys12B 022704.txt~Florence - SYS

source_name: sys12B 022704, Florence - SYS

value: Not Hispanic or Latino

value: JIA Systemic Onset


title: sys19B 051602.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 3 yrs, when sample taken.

source_name: sys19B 051602, Florence - SYS

value: 3 yrs, when sample taken.


title: INF171.txt~Ecoli

source_name: INF171, Ecoli

value: 3 mths, when sample taken.

value: Urinary Tract Infection


title: sys02B 052802.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 11 yrs, when sample taken.

source_name: sys02B 052802, Florence - SYS

value: 11 yrs, when sample taken.

value: White


title: INF154.txt~Ecoli

description: A male subject diagnosed with Urinary Tract Infection where age 2 mths, when sample taken.

source_name: INF154, Ecoli

value: 2 mths, when sample taken.

value: M


title: sys01B 080402.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 17 yrs, when sample taken.

source_name: sys01B 080402, Florence - SYS

value: 17 yrs, when sample taken.

value: F


title: sys06B 053002.txt~Florence - SYS

description: A female subject diagnosed with JIA Systemic Onset where age 5 yrs, when sample taken.

source_name: sys06B 053002, Florence - SYS

value: 5 yrs, when sample taken.

value: Asian


title: INF156.txt~Ecoli

description: A male subject diagnosed with Urinary Tract Infection where age 3 mths, when sample taken.

source_name: INF156, Ecoli

value: Hispanic or Latino

value: (Race Not Reported)


title: RET1854B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 50 yrs, when sample taken.

source_name: RET1854B, liver-transplant-AB-chip

value: 50 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: Hepatitis C


title: RET1847B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Laennec's Cirrhosis where age 53 yrs, when sample taken.

source_name: RET1847B, liver-transplant-AB-chip

value: 53 yrs, when sample taken.

value: Laennec's Cirrhosis


title: INF150.txt~STAPH

description: A female subject diagnosed with Osteomyelitis where age 9 yrs, when sample taken.

source_name: INF150, STAPH

value: 9 yrs, when sample taken.

value: Not Hispanic or Latino

value: Black or African American

value: Osteomyelitis


title: RET1814B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with Hepatitis C where age 45 yrs, when sample taken.

source_name: RET1814B, liver-transplant-AB-chip

value: 45 yrs, when sample taken.


title: INF152.txt~Ecoli

description: A male subject diagnosed with Meningitis where age 2.5 mths, when sample taken.

source_name: INF152, Ecoli

value: 2.5 mths, when sample taken.

value: M

value: Meningitis


title: RET1845B.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Primary Biliary Cirrhosis where age 44 yrs, when sample taken.

source_name: RET1845B, liver-transplant-AB-chip

value: 44 yrs, when sample taken.

value: F

value: Primary Biliary Cirrhosis


title: RET1841B.txt~liver-transplant-AB-chip

description: A male subject diagnosed with PSC-UC where age 52 yrs, when sample taken.

source_name: RET1841B, liver-transplant-AB-chip

value: 52 yrs, when sample taken.

value: (Race Not Reported)

value: PSC-UC


title: INF151.txt~Ecoli

description: A male subject diagnosed with Urinary Tract Infection where age 1.5 mths, when sample taken.

source_name: INF151, Ecoli

value: 1.5 mths, when sample taken.

value: Hispanic or Latino

value: Urinary Tract Infection


title: INF139.txt~Ecoli

description: A male subject diagnosed with Urinary Tract Infection where age 1 mth, when sample taken.

source_name: INF139, Ecoli

value: 1 mth, when sample taken.

value: E. coli


title: INF120.txt~Ecoli

source_name: INF120, Ecoli


title: INF088.txt~STAPH

description: A male subject diagnosed with Osteomyelitis/bacteremia where age 11 mths, when sample taken.

source_name: INF088, STAPH

value: 11 mths, when sample taken.

value: Osteomyelitis/bacteremia

value: S. aureus, MRSA


title: RET1754B.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Primary Sclerosing Cholangitis where age 51 yrs, when sample taken.

source_name: RET1754B, liver-transplant-AB-chip

value: 51 yrs, when sample taken.

value: (Ethnicity Not Reported)

value: Primary Sclerosing Cholangitis


title: RET1771B.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Hepatitis C where age 42 yrs, when sample taken.

source_name: RET1771B, liver-transplant-AB-chip

value: 42 yrs, when sample taken.

value: Hepatitis C


title: RET1838B.txt~liver-transplant-AB-chip

description: A female subject diagnosed with Autoimmune Hepatitis where age 66 yrs, when sample taken.

source_name: RET1838B, liver-transplant-AB-chip

value: 66 yrs, when sample taken.

value: F

value: Autoimmune Hepatitis


title: INF149.txt~Ecoli

description: A male subject diagnosed with Urinary Tract Infection where age 2 mths, when sample taken.

source_name: INF149, Ecoli

value: 2 mths, when sample taken.

value: M

value: Not Hispanic or Latino

value: Black or African American


title: INF133.txt~Ecoli

description: A male subject whose illness is not reported where age 2 mths, when sample taken.

source_name: INF133, Ecoli

value: (Race Not Reported)

value: (Illness not reported).


title: INF148.txt~Ecoli

description: A female subject whose illness is not reported where age 8 yrs, when sample taken.

source_name: INF148, Ecoli

value: 8 yrs, when sample taken.