title: _mucinous_B106

status: Public on Sep 17 2008

city: Heidelberg

last: Calabro

address: INF 580

institute: DKFZ

description: Gene expression data from human breast cancer tissue B106

hyb_protocol: ch1 and ch2 together are solved in 50 ul 1x DIG-Easy hybridization buffer (Roche Diagnostics, Mannheim, Germany), containing 10x Denhardt's solution and 2 ng/ul Cot1-DNA (Invitrogen); sample was denaturated at 65C for 2min, hybridzation of arrays were performed in Corning chambers 17h at 39C; slides were washed twice in 1xSSC+0.1SDS and once in 0.1xSSC+ 0.1SDS before air pressure drying and scanning.

scan_protocol: Hybridized arrays were scanned with the GenePix 4000B microarray scanner (Axon Instruments, Union City, CA)

data_processing: log2 ratios (Cy5/Cy3)

source_name: human breast cancer tumor tissue

label_protocol: Labelled cRNA were prepared according to the TacKle protocol [Schlingemann et al. Nucleic Acids Res. 2005]

extract_protocol: total RNA was extracted using the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturers' instructions.

treatment_protocol: tumor tissue samples from surgically treated patients were collected intraoperatively, snap-frozen and stored at -80 C. All samples underwent a careful analysis of the histopathology, estimation of tumor and stromal content and subsequent macro-dissection of the tumor regions before enrollment into the microarray experiments.

tag: Alter = 38, Year_of_Diagnosis = 1992, Gender = f, pT = 2, pN = 1BIV, pM = 0, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 1, Diagnosis = mucinous, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 51, OS_Months = 155, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA

source_name: Universal human reference RNA (Stratagene), one round amplified

extract_protocol: 2ug total RNA was amplified one round based on T7 RNA Polymerase (Ambion Message Amplification Kit Reagents, 6h IVT)

tag: common reference sample


title: _IDC_B108

type: RNA

first: Alberto

country: Germany

description: Gene expression data from human breast cancer tissue B108

molecule: total RNA

organism: Homo sapiens

tag: Alter = 51, Year_of_Diagnosis = 1991, Gender = f, pT = 2, pN = 1BIV, pM = X, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 166, OS_Months = 166, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = NA, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: _IDC_B101

description: Gene expression data from human breast cancer tissue B101

tag: Alter = 46, Year_of_Diagnosis = 1989, Gender = f, pT = 1B, pN = 2, pM = 0, Number_of_asported_lymphnodes = 28, Number_of_positive_lyphnodes = 6, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 2, Diagnosis = IDC, Lymphocyte_infiltration = 1, Status = dead, Reason_of_death = tumoral, DFS_Months = 92.42, OS_Months = 121.3, , Epithel_Percentage = 80, Menopausal_status_at_First_Tumor_Diagnosis = premenopausal, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = yes


title: _medullar_B105

description: Gene expression data from human breast cancer tissue B105

tag: Alter = 60, Year_of_Diagnosis = 1992, Gender = f, pT = 1C, pN = 1BIII, pM = 0, Number_of_asported_lymphnodes = 35, Number_of_positive_lyphnodes = 26, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = medullar, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 6.9, OS_Months = 16.62, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_B102

description: Gene expression data from human breast cancer tissue B102

tag: Alter = 39, Year_of_Diagnosis = 1992, Gender = f, pT = 3, pN = 1BI, pM = 0, Number_of_asported_lymphnodes = 18, Number_of_positive_lyphnodes = 1, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 1, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 1, OS_Months = 37, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 2, Neoadjuvant_PCT_with_Anthracyclin = yes, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = yes, Adjuvant_PCT_without_Anthracyclin = no


title: _ILC_B100

description: Gene expression data from human breast cancer tissue B100

tag: Alter = 66, Year_of_Diagnosis = 1991, Gender = f, pT = 1, pN = 1BIV, pM = X, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 1, Diagnosis = ILC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 162, OS_Months = 162, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = NA, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: _IDC_B104

description: Gene expression data from human breast cancer tissue B104

tag: Alter = 77, Year_of_Diagnosis = 1992, Gender = f, pT = 2, pN = 1BI, pM = 0, Number_of_asported_lymphnodes = 20, Number_of_positive_lyphnodes = 3, Level_Estrogen_receptor_IHC = 3, Level_Progesteron_receptor_IHC = 3, Diagnosis = IDC, Lymphocyte_infiltration = 1, Status = lost_for_follow_up, Reason_of_death = NA, DFS_Months = 82.79, OS_Months = 109, , Epithel_Percentage = 80, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_B098

description: Gene expression data from human breast cancer tissue B098

tag: Alter = 53, Year_of_Diagnosis = 1992, Gender = f, pT = 1B, pN = 0, pM = 1, Number_of_asported_lymphnodes = 9, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 1, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 36.7, OS_Months = 52.73, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_B097

description: Gene expression data from human breast cancer tissue B097

tag: Alter = 50, Year_of_Diagnosis = 1990, Gender = f, pT = 1C, pN = 1BI, pM = X, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 1, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 95, OS_Months = 119, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = NA, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: RPTEC_hypoxic_rep2

city: Copenhagen

first: Peter

last: Staller

address: Ole Maaløes Vej 5

department: BRIC

country: Denmark

institute: University of Copenhagen

description: Three independent biological replicates were performed.

hyb_protocol: 10 µg of fragmented cRNA were hybridised (45°C, 16 hours). Hybridization was controled by use of the GeneChip Eukaryotic Hybridization Control Kit (Affymetrix).

scan_protocol: Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4 and scanned in an Affymetrix GeneChip scanner. Chip analysis was performed using the Affymetrix Microarray Suite v5.

data_processing:
The microarray CEL-files were read into the statistical software “R” [1], where all subsequent data analysis was done. Expression index computation was calculated using the RMA algorithm with default settings (i.e. “RMA” background correction, “quantiles” normalisation, “pmonly” Perfect Match correction, and “medianpolish” probe set summary calculation). Gene expression levels in Control and hypoxia-treated samples were compared by standard t-tests, and the p-values were corrected for multiple testing by controlling the False Discovery Rate (FDR). The FDR was set to 5% - meaning that around 5% of the differentially expressed genes/probe sets can be expected to be false positives. Along with basic annotation the data for the differentially expressed genes were collected in an Excel file.
[1]: R Development Core Team (2007). R: A language and environment for
  statistical computing. R Foundation for Statistical Computing,
  Vienna, Austria. ISBN 3-900051-07-0, URL http://www.R-project.org.

label: Biotin

source_name: renal proximal tubule epithelial cells, hypoxic

label_protocol:
10 µg of total RNA was reverse transcribed using the SuperScript Choice system for cDNA synthesis (Invitrogen) according to the protocol recommended by Affymetrix. Theoligonucleotide used for priming was 5'-ggccagtgaattgtaatacgactcactatagggaggcgg-(t)24-3' (Genset Oligo). Double-stranded cDNA was cleaned by phenol:chloroform extraction and the
aqueous phase removed by centrifugation through Phase-lock Gel (Eppendorf). In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics). The cRNA was cleaned using RNAeasy clean-up columns (Qiagen). The cRNA was fragmented by heating in 40 mM Tris-acetate pH 8.1, 100mM KOAc, 30 mM MgOAc.

growth_protocol: Human renal proximal tubule epithelial cells were maintained in REGM with supplements and growth factors (REGM BulletKit CC-3190; Lonza) according to the provider’s instructions. Seeding density for subculturing was 2500 cells per square cm. The cells were maintained at 37°C in a humidified atmosphere of 5% CO2 and 95% air.

extract_protocol: Total RNA was prepared using TRIZOL reagent (Invitrogen) and purified on RNeasy Miniprepcolumns (Qiagen) according to the manufacturers' recommendations.

treatment_protocol:
Passage 4 renal proximal tubule epithelial cells were cultured for 24h in a humidified
atmosphere of 5% CO2, 94% nitrogen and 1% oxygen.

tag: Organism Part

value: kidney

tag: Gender

value: female Age:55

tag: Disease state

value: normal tissue


title: RPTEC_normoxic_rep3

data_processing:
The microarray CEL-files (Affymetrix HGU133A platform) were read into the statistical software “R” [1], where all subsequent data analysis was done. Expression index computation was calculated using the RMA algorithm with default settings (i.e. “RMA” background correction, “quantiles” normalisation, “pmonly” Perfect Match correction, and “medianpolish” probe set summary calculation). Gene expression levels in Control and hypoxia-treated samples were compared by standard t-tests, and the p-values were corrected for multiple testing by controlling the False Discovery Rate (FDR). The FDR was set to 5% - meaning that around 5% of the differentially expressed genes/probe sets can be expected to be false positives. Along with basic annotation the data for the differentially expressed genes were collected in an Excel file.
[1]: R Development Core Team (2007). R: A language and environment for
  statistical computing. R Foundation for Statistical Computing,
  Vienna, Austria. ISBN 3-900051-07-0, URL http://www.R-project.org.

source_name: renal proximal tubule epithelial cells, normoxic

treatment_protocol:
Passage 4 renal proximal tubule epithelial cells were cultured for 24h in a humidified
atmosphere of 5% CO2 and 95% air.

value: kidney Gender:female Age:55 Disease state:normal tissue


title: _IDC_B086

description: Gene expression data from human breast cancer tissue B086

tag: Alter = 61, Year_of_Diagnosis = 1992, Gender = f, pT = 1B, pN = 0, pM = 0, Number_of_asported_lymphnodes = 21, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 2, Diagnosis = IDC, Lymphocyte_infiltration = 0, Status = lost_for_follow_up, Reason_of_death = NA, DFS_Months = 131.68, OS_Months = 153, , Epithel_Percentage = 80, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_B094

description: Gene expression data from human breast cancer tissue B094

tag: Alter = 65, Year_of_Diagnosis = 1992, Gender = f, pT = X, pN = 0, pM = 0, Number_of_asported_lymphnodes = X, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = NA, Level_Progesteron_receptor_IHC = NA, Diagnosis = IDC, Lymphocyte_infiltration = 0, Status = lost_for_follow_up, Reason_of_death = NA, DFS_Months = 27.24, OS_Months = 35.78, , Epithel_Percentage = 80, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = no, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC-mixed_B085

description: Gene expression data from human breast cancer tissue B085

tag: Alter = 73, Year_of_Diagnosis = 1992, Gender = f, pT = 4D, pN = 1BII, pM = 0, Number_of_asported_lymphnodes = 10, Number_of_positive_lyphnodes = 9, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC-mixed, Lymphocyte_infiltration = 1, Status = dead, Reason_of_death = tumoral, DFS_Months = 18, OS_Months = 28.19, , Epithel_Percentage = 80, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 3+, Neoadjuvant_PCT_with_Anthracyclin = yes, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = yes, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC-mixed_B093

description: Gene expression data from human breast cancer tissue B093

tag: Alter = 62, Year_of_Diagnosis = 1995, Gender = f, pT = 3, pN = 1BIII, pM = 0, Number_of_asported_lymphnodes = 16, Number_of_positive_lyphnodes = 15, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC-mixed, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 18.83, OS_Months = 56.97, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: RPTEC_hypoxic_rep3


title: RPTEC_hypoxic_rep1


title: _IDC_B092

description: Gene expression data from human breast cancer tissue B092

tag: Alter = 67, Year_of_Diagnosis = 1992, Gender = f, pT = 1C, pN = 0, pM = 0, Number_of_asported_lymphnodes = 24, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 3, Level_Progesteron_receptor_IHC = 3, Diagnosis = IDC, Lymphocyte_infiltration = 0, Status = lost_for_follow_up, Reason_of_death = NA, DFS_Months = 157, OS_Months = 157, , Epithel_Percentage = 70, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = no, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_B089

description: Gene expression data from human breast cancer tissue B089

tag: Alter = 67, Year_of_Diagnosis = 1990, Gender = f, pT = 2, pN = 1BII, pM = 0, Number_of_asported_lymphnodes = 9, Number_of_positive_lyphnodes = 4, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = 0, Status = dead, Reason_of_death = tumoral, DFS_Months = 37.82, OS_Months = 61.96, , Epithel_Percentage = 80, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no

tag: common reference sample


title: _IDC-mixed_B084

description: Gene expression data from human breast cancer tissue B084

tag: Alter = 47, Year_of_Diagnosis = 1991, Gender = f, pT = 1C, pN = 0, pM = 0, Number_of_asported_lymphnodes = 8, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC-mixed, Lymphocyte_infiltration = 1, Status = dead, Reason_of_death = tumoral, DFS_Months = 34.27, OS_Months = 92.16, , Epithel_Percentage = 70, Menopausal_status_at_First_Tumor_Diagnosis = premenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = yes, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = yes, Adjuvant_PCT_without_Anthracyclin = no


title: RPTEC_normoxic_rep2


title: Respiratory specimen (positive for adenovirus)

city: San Francisco

first: Joe

last: DeRisi

state: CA

department: Biochemistry and Biophysics

country: USA

institute: University of California, San Francisco

description: extracted total nucleic acid from throat swabs collected from individuals with influenza-like illness

hyb_protocol: standard hybridization in 65 C degree chamber overnight

scan_protocol: spotted arrays scanned using GenePix 4000B scanner

data_processing: Median feature intensity minus median background intensity

organism: Viruses

label_protocol: standard Cy3 fluorescent labelling using aminoallyl dNTPs

extract_protocol: total nucleic acid extraction using the MasterPure Complete DNA and RNA Purification Kit (Epicenter, Madison, WI)

tag: Adenovirus


title: RPTEC_normoxic_rep1

label_protocol: 10 µg of total RNA was reverse transcribed using the SuperScript Choice system for cDNA synthesis (Invitrogen) according to the protocol recommended by Affymetrix. The oligonucleotide used for priming was 5'-ggccagtgaattgtaatacgactcactatagggaggcgg-(t)24-3' (Genset Oligo). Double-stranded cDNA was cleaned by phenol:chloroform extraction and the aqueous phase removed by centrifugation through Phase-lock Gel (Eppendorf). In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics). The cRNA was cleaned using RNAeasy clean-up columns (Qiagen). The cRNA was fragmented by heating in 40 mM Tris-acetate pH 8.1, 100 mM KOAc, 30 mM MgOAc.

extract_protocol: Total RNA was prepared using TRIZOL reagent (Invitrogen) and purified on RNeasy Miniprep columns (Qiagen) according to the manufacturers' recommendations.

treatment_protocol: Passage 4 renal proximal tubule epithelial cells were cultured for 24h in a humidified atmosphere of 5% CO2 and 95% air.

value: female

tag: Age


title: _mucinous_B082

description: Gene expression data from human breast cancer tissue B082

tag: Alter = 77, Year_of_Diagnosis = 1991, Gender = f, pT = 1C, pN = 0, pM = X, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = NA, Level_Progesteron_receptor_IHC = NA, Diagnosis = mucinous, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = NA, OS_Months = NA, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = NA, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: _IDC_B081

description: Gene expression data from human breast cancer tissue B081

tag: Alter = 53, Year_of_Diagnosis = 1993, Gender = f, pT = 3, pN = 2, pM = 0, Number_of_asported_lymphnodes = 11, Number_of_positive_lyphnodes = 3, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 2, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 42.28, OS_Months = 56.54, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_B078

description: Gene expression data from human breast cancer tissue B078

tag: Alter = 47, Year_of_Diagnosis = 1991, Gender = f, pT = 2, pN = 1BI, pM = 0, Number_of_asported_lymphnodes = 7, Number_of_positive_lyphnodes = 3, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = lost_for_follow_up, Reason_of_death = NA, DFS_Months = 36.4, OS_Months = 154, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = premenopausal, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_B080

description: Gene expression data from human breast cancer tissue B080

tag: Alter = 41, Year_of_Diagnosis = 1990, Gender = f, pT = 3, pN = 0, pM = 0, Number_of_asported_lymphnodes = 15, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = 1, Status = dead, Reason_of_death = tumoral, DFS_Months = 5.42, OS_Months = 13.21, , Epithel_Percentage = 80, Menopausal_status_at_First_Tumor_Diagnosis = premenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Respiratory specimen (positive for cardiovirus UC1)

source_name: extracted total nucleic acid from throat swabs collected from individuals with influenza-like illness

tag: cardiovirus UC1


title: Blood (UC152_B)

status: Public on Sep 18 2008

type: genomic

city: Lund

first: Johan

last: Staaf

address: Medicon Village

country: Sweden

institute: SCIBLU - Swegene Centre for Integrative Biology at Lund University

description: Genomic DNA extracted from blood was genotyped using Infinium HumanCNV370-Duov1 Genotyping BeadChips (Illumina).

hyb_protocol: RA1 resuspended DNA was loaded onto BeadChips arrays. After overnight incubation at 48¡C, single-base extension and allele-specific staining was performed on a Teflow chamber rack system (Tecan, Maennedorf, Switzerland).

scan_protocol: After allele-specific staining BeadChip arrays were coated with XC4/ethanol , dried for 1 hour and scanned on a BeadArray Reader (Illumina).

data_processing: Image data was analyzed using Beadstudio 3.1.3 with GT module 3.2.33 (Illumina).

label: C-Bio and A-DNP

molecule: genomic DNA

source_name: Blood

label_protocol: Genotyping was performed using Illumina Infinium HumanCNV370 Genotyping BeadChips according to the manufacturerÕs protocol (Illumina Inc., San Diego, CA, www.illumina.com). 750ng of genomic DNA was whole-genome amplified in an overnight reaction at 37¡C using amplification master mix (WG-AMM) and primer/neutralization mix (WG-MP1). After incubation the amplified DNA was fragmented with fragmentation mix (WG-FRG), precipitated with isopropanol and precipitation mix (PA1) and resuspended in hybridization buffer (RA1).

extract_protocol: Extraction of genomic DNA was performed using DNeasy kit (Qiagen) according to the manufacturer's instructions.

tag: Gender

value: Male


title: Respiratory specimen (positive for human metapneumovirus)

extract_protocol: describe extraction protocol heretotal nucleic acid extraction using the MasterPure Complete DNA and RNA Purification Kit (Epicenter, Madison, WI)

tag: HMPV


title: Stool specimen (positive for cardiovirus UC2)

description: RNA randomly amplified using modified (2006, CC) RdABC protocol.

extract_protocol: total nucleic acid extraction using the Invitrogen 96Well Viral DNA/RNA Extraction Kit

tag: cardiovirus UC2


title: _IDC_B076

description: Gene expression data from human breast cancer tissue B076

tag: Alter = 71, Year_of_Diagnosis = 1992, Gender = f, pT = 1C, pN = 1BI, pM = 0, Number_of_asported_lymphnodes = 17, Number_of_positive_lyphnodes = 2, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = 3, Status = lebt, Reason_of_death = NA, DFS_Months = 173, OS_Months = 297, , Epithel_Percentage = 100, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = brusterhaltend_(Quadrantenresektion), Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Stool specimen (positive for cardiovirus UC3)

source_name: RNA randomly amplified using modified (2006, CC) RdABC protocol.

tag: cardiovirus UC3


title: Stool specimen (positive for cardiovirus UC7)

tag: cardiovirus UC7


title: Stool specimen (positive for cardiovirus UC5)

tag: cardiovirus UC5


title: _IDC_B073

description: Gene expression data from human breast cancer tissue B073

tag: Alter = 72, Year_of_Diagnosis = 1995, Gender = f, pT = 1C, pN = 0, pM = 0, Number_of_asported_lymphnodes = 13, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 7.52, OS_Months = 10.71, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Blood (UC288_B)


title: _IDC_B071

description: Gene expression data from human breast cancer tissue B071

tag: Alter = 86, Year_of_Diagnosis = 1990, Gender = f, pT = 4B, pN = 1BIII, pM = X, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 1, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 10, OS_Months = 10, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = NA, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA

tag: common reference sample


title: Blood (UC395_B)


title: Breast carcinoma cell line HCC1395 diluted with HCC1395BL (CRL2324_45pc)

description: Genomic DNA extracted from breast carcinoma cell line was genotyped using Infinium HumanCNV370-Duov1 Genotyping BeadChips (Illumina).

source_name: breast carcinoma cell line HCC1395 (ATCC cat.no CRL-2324D) diluted with HCC1395BL.

extract_protocol: Extraction of genomic DNA from fresh frozen tissue was performed using proteinase K and repeated phenol-chloroform extraction.

tag: Dilution percentage is 45% tumor (CRL2324) genomic DNA. 95% confidence interval for dilution is 38-51%.


title: Stool specimen (positive for cardiovirus UC6)

tag: cardiovirus UC6


title: _IDC_B075

description: Gene expression data from human breast cancer tissue B075

tag: Alter = 66, Year_of_Diagnosis = 1993, Gender = f, pT = 1C, pN = 0, pM = 0, Number_of_asported_lymphnodes = 10, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = 2, Status = dead, Reason_of_death = tumoral, DFS_Months = 0.5, OS_Months = 20, , Epithel_Percentage = 40, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = no, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Stool specimen (positive for cardiovirus UC4)

tag: cardiovirus UC4


title: Urothelial carcinoma (UC288_R)

description: Genomic DNA extracted from urothelial tumors was genotyped using Infinium HumanCNV370-Duov1 Genotyping BeadChips (Illumina).

source_name: Urothelial carcinoma


title: Urothelial carcinoma (UC395_I_M2)


title: _IDC_B069

description: Gene expression data from human breast cancer tissue B069

tag: Alter = 70, Year_of_Diagnosis = 1995, Gender = f, pT = 1C, pN = 1BIII, pM = 0, Number_of_asported_lymphnodes = 12, Number_of_positive_lyphnodes = 2, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 2, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 7.29, OS_Months = 111.61, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Breast carcinoma cell line HCC1395 diluted with HCC1395BL (CRL2324_21pc)

tag: Dilution percentage is 21% tumor (CRL2324) genomic DNA. 95% confidence interval for dilution is 17-26%.


title: _ILC_B068

description: Gene expression data from human breast cancer tissue B068

tag: Alter = 61, Year_of_Diagnosis = 1991, Gender = f, pT = 2, pN = 1BIV, pM = 0, Number_of_asported_lymphnodes = 19, Number_of_positive_lyphnodes = 13, Level_Estrogen_receptor_IHC = 3, Level_Progesteron_receptor_IHC = 2, Diagnosis = ILC, Lymphocyte_infiltration = 1, Status = dead, Reason_of_death = tumoral, DFS_Months = 29.7, OS_Months = 56.97, , Epithel_Percentage = 80, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Breast carcinoma cell line HCC1395 diluted with HCC1395BL (CRL2324_47pc)

tag: Dilution percentage is 47% tumor (CRL2324) genomic DNA. 95% confidence interval for dilution is 40-54%.


title: _Neuroendokrines_Karzinom_B064

description: Gene expression data from human breast cancer tissue B064

tag: Alter = 68, Year_of_Diagnosis = 1992, Gender = f, pT = 2, pN = 0, pM = 0, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 3, Level_Progesteron_receptor_IHC = 2, Diagnosis = Neuroendokrines_Karzinom, Lymphocyte_infiltration = 1, Status = alive, Reason_of_death = NA, DFS_Months = 75, OS_Months = 75, , Epithel_Percentage = 90, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: Breast carcinoma cell line HCC1395 diluted with HCC1395BL (CRL2324_10pc)

tag: Dilution percentage is 10% tumor (CRL2324) genomic DNA. 95% confidence interval for dilution is 7-12%.


title: Blood (UC513_B)

tag: Gender


title: Urothelial carcinoma (UC513_M1)


title: Breast carcinoma cell line HCC1395 diluted with HCC1395BL (CRL2324_79pc)

tag: Dilution percentage is 79% tumor (CRL2324) genomic DNA. 95% confidence interval for dilution is 74-83%.


title: Breast carcinoma cell line HCC1395 diluted with HCC1395BL (CRL2324_34pc)

tag: Dilution percentage is 34% tumor (CRL2324) genomic DNA. 95% confidence interval for dilution is 28-40%.


title: _IDC_B063

description: Gene expression data from human breast cancer tissue B063

tag: Alter = 51, Year_of_Diagnosis = 1992, Gender = f, pT = 2, pN = 0, pM = 0, Number_of_asported_lymphnodes = 19, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 3, Diagnosis = IDC, Lymphocyte_infiltration = 0, Status = lost_for_follow_up, Reason_of_death = NA, DFS_Months = 116, OS_Months = 149, , Epithel_Percentage = 90, Menopausal_status_at_First_Tumor_Diagnosis = premenopausal, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_B062

description: Gene expression data from human breast cancer tissue B062

tag: Alter = 65, Year_of_Diagnosis = 1991, Gender = f, pT = 2, pN = 0, pM = X, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 159, OS_Months = 281, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: _IDC_B061

description: Gene expression data from human breast cancer tissue B061

tag: Alter = 43, Year_of_Diagnosis = 2000, Gender = f, pT = 2, pN = 1BI, pM = 0, Number_of_asported_lymphnodes = 25, Number_of_positive_lyphnodes = 2, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = 1, Status = lebt-Nachsorge_Onkologie, Reason_of_death = NA, DFS_Months = 67, OS_Months = 191, , Epithel_Percentage = 70, Menopausal_status_at_First_Tumor_Diagnosis = premenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Breast carcinoma cell line HCC1395 diluted with HCC1395BL (CRL2324_50pc)

tag: Dilution percentage is 50% tumor (CRL2324) genomic DNA. 95% confidence interval for dilution is 43-57%.


title: Breast carcinoma cell line HCC1395 diluted with HCC1395BL (CRL2324_23pc)

tag: Dilution percentage is 23% tumor (CRL2324) genomic DNA. 95% confidence interval for dilution is 18-28%.


title: _IDC_B060

description: Gene expression data from human breast cancer tissue B060

tag: Alter = 59, Year_of_Diagnosis = 1990, Gender = f, pT = 1C, pN = 2, pM = 0, Number_of_asported_lymphnodes = 19, Number_of_positive_lyphnodes = 19, Level_Estrogen_receptor_IHC = 3, Level_Progesteron_receptor_IHC = 1, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 18.56, OS_Months = 33.35, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 2, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no

tag: common reference sample


title: Urothelial carcinoma (UC152_I)


title: _IDC_B065

description: Gene expression data from human breast cancer tissue B065

tag: Alter = 38, Year_of_Diagnosis = 1993, Gender = f, pT = 2, pN = 1BI, pM = 0, Number_of_asported_lymphnodes = 18, Number_of_positive_lyphnodes = 1, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 20.11, OS_Months = 29.96, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = yes


title: Lymphoblastoid cell line HCC1395BL (CRL2325)

description: Genomic DNA extracted from lymphoblastoid cell line was genotyped using Infinium HumanCNV370-Duov1 Genotyping BeadChips (Illumina).

source_name: lymphoblastoid cell line HCC1395BL (ATCC cat.no CRL-2325D)

value: Female. HCC1395BL is a B lymphoblastoid cell line initiated by Epstein-Barr virus transformation of pheripheral blood lymphocytes obtained from the same patient as the breast carcinoma cell line HCC1395. Available from ATCC (www.atcc.org) as CRL-2325D.


title: _IDC_B059

description: Gene expression data from human breast cancer tissue B059

tag: Alter = 66, Year_of_Diagnosis = 1993, Gender = f, pT = 1C, pN = 0, pM = 0, Number_of_asported_lymphnodes = 10, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = 2, Status = dead, Reason_of_death = tumoral, DFS_Months = 0.5, OS_Months = 20, , Epithel_Percentage = 40, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = no, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Breast carcinoma cell line HCC1395 diluted with HCC1395BL (CRL2324_14pc)

tag: Dilution percentage is 14% tumor (CRL2324) genomic DNA. 95% confidence interval for dilution is 10-17%.


title: _ILC_B058

description: Gene expression data from human breast cancer tissue B058

tag: Alter = 60, Year_of_Diagnosis = 1993, Gender = m, pT = 2, pN = 1BI, pM = 0, Number_of_asported_lymphnodes = 13, Number_of_positive_lyphnodes = 1, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 3, Diagnosis = ILC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 54.67, OS_Months = 92.65, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 2, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Breast carcinoma cell line HCC1395 (CRL2324)

source_name: breast carcinoma cell line HCC1395 (ATCC cat.no CRL-2324D)

value: Female. Breast cancer cell line HCC1395 initiated from a a breast tumor classified as TNM stage 1, grade 3, invasive ductal carcinoma with 0 out of 34 lymph node metastasis. Available from ATCC (www.atcc.org) as CRL2324D.


title: _IDC_B055

description: Gene expression data from human breast cancer tissue B055

tag: Alter = 58, Year_of_Diagnosis = 1995, Gender = f, pT = 2, pN = 1BIII, pM = 0, Number_of_asported_lymphnodes = 15, Number_of_positive_lyphnodes = 2, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 1, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 11.89, OS_Months = 45.44, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Breast carcinoma cell line HCC1395 diluted with HCC1395BL (CRL2324_30pc)

tag: Dilution percentage is 30% tumor (CRL2324) genomic DNA. 95% confidence interval for dilution is 24-35%.


title: _IDC_B054

description: Gene expression data from human breast cancer tissue B054

tag: Alter = 36, Year_of_Diagnosis = 1991, Gender = f, pT = 2, pN = 1BI, pM = 0, Number_of_asported_lymphnodes = 10, Number_of_positive_lyphnodes = 2, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = 1, Status = dead, Reason_of_death = tumoral, DFS_Months = 84.8, OS_Months = 121.4, , Epithel_Percentage = 90, Menopausal_status_at_First_Tumor_Diagnosis = premenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 3+, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = yes


title: _IDC_B051

description: Gene expression data from human breast cancer tissue B051

tag: Alter = 75, Year_of_Diagnosis = 1991, Gender = f, pT = 4, pN = X, pM = 0, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 3, Level_Progesteron_receptor_IHC = 3, Diagnosis = IDC, Lymphocyte_infiltration = 0, Status = dead, Reason_of_death = tumoral, DFS_Months = 0.69, OS_Months = 5.88, , Epithel_Percentage = 90, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = MRM_(pall.),_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC-mixed_B053

description: Gene expression data from human breast cancer tissue B053

tag: Alter = 69, Year_of_Diagnosis = 1990, Gender = f, pT = 2, pN = 0, pM = 0, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 1, Diagnosis = IDC-mixed, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 150, OS_Months = 150, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: _IDC_B052

description: Gene expression data from human breast cancer tissue B052

tag: Alter = 25, Year_of_Diagnosis = 1992, Gender = f, pT = 1B, pN = 1BIII, pM = 0, Number_of_asported_lymphnodes = 19, Number_of_positive_lyphnodes = 13, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 2, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 13.67, OS_Months = 31.51, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = yes


title: Rhesus heart 6 (replicate A)

city: Chicago

first: Ran

last: Blekhman

state: IL

institute: University of Chicago

description: Using the multi-species microarray, we compared gene expression levels within and between species in three tissues: Livers, Kidneys (cortex) and Heart muscle.

hyb_protocol: Nimblegen hybridization protocol (www.nimblegen.com)

scan_protocol: Microarrays were scanned using an Axon scanner

data_processing: Raw data was extracted from the images using the NimbleScan software (version 2.4). We performed background correction using the normexp function in limma with an offset of 32, and normalization using an adaptation of the quantile normalization approach.

organism: Macaca mulatta

source_name: heart

label_protocol: Nimblegen RNA labeling protocol (www.nimblegen.com)

extract_protocol: total RNA was extracted using Trizol

tag: Rhesus heart 6 (replicate A)


title: _IDC_B050

description: Gene expression data from human breast cancer tissue B050

tag: Alter = 70, Year_of_Diagnosis = 1992, Gender = f, pT = 2, pN = 2, pM = 0, Number_of_asported_lymphnodes = 23, Number_of_positive_lyphnodes = 9, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = 0, Status = lost_for_follow_up, Reason_of_death = NA, DFS_Months = 145, OS_Months = 145, , Epithel_Percentage = 70, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_B047

description: Gene expression data from human breast cancer tissue B047

tag: Alter = 47, Year_of_Diagnosis = 1991, Gender = f, pT = 2, pN = 1BIII, pM = 0, Number_of_asported_lymphnodes = 16, Number_of_positive_lyphnodes = 2, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 1, Diagnosis = IDC, Lymphocyte_infiltration = 2, Status = lost_for_follow_up, Reason_of_death = NA, DFS_Months = 172, OS_Months = 172, , Epithel_Percentage = 60, Menopausal_status_at_First_Tumor_Diagnosis = premenopausal, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_B046

description: Gene expression data from human breast cancer tissue B046

tag: Alter = 41, Year_of_Diagnosis = 1994, Gender = f, pT = 4, pN = 1BIII, pM = 0, Number_of_asported_lymphnodes = 20, Number_of_positive_lyphnodes = 20, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 32, OS_Months = 11.01, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = no, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_B049

description: Gene expression data from human breast cancer tissue B049

tag: Alter = 51, Year_of_Diagnosis = 1991, Gender = f, pT = 1C, pN = 0, pM = X, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = NA, Level_Progesteron_receptor_IHC = NA, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 16, OS_Months = 16, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = NA, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: _IDC_B044

description: Gene expression data from human breast cancer tissue B044

tag: Alter = 80, Year_of_Diagnosis = 1991, Gender = f, pT = 2, pN = 2, pM = 0, Number_of_asported_lymphnodes = 13, Number_of_positive_lyphnodes = 1, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 2, Diagnosis = IDC, Lymphocyte_infiltration = 1, Status = lost_for_follow_up, Reason_of_death = NA, DFS_Months = 74.87, OS_Months = 74.87, , Epithel_Percentage = 80, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_B043

description: Gene expression data from human breast cancer tissue B043

tag: Alter = 62, Year_of_Diagnosis = 1992, Gender = f, pT = 1A, pN = 0, pM = 0, Number_of_asported_lymphnodes = 6, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 2, Diagnosis = IDC, Lymphocyte_infiltration = 1, Status = lost_for_follow_up, Reason_of_death = NA, DFS_Months = 158, OS_Months = 158, , Epithel_Percentage = 70, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no

tag: common reference sample


title: Rhesus heart 4 (replicate b)

tag: Rhesus heart 4 (replicate b)


title: Rhesus heart 5 (replicate A)

tag: Rhesus heart 5 (replicate A)


title: Rhesus heart 4 (replicate A)

tag: Rhesus heart 4 (replicate A)


title: Rhesus heart 5 (replicate b)

tag: Rhesus heart 5 (replicate b)


title: _IDC_B040

description: Gene expression data from human breast cancer tissue B040

tag: Alter = 51, Year_of_Diagnosis = 1993, Gender = f, pT = 4B, pN = 2, pM = 1, Number_of_asported_lymphnodes = 17, Number_of_positive_lyphnodes = 12, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 3, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 0, OS_Months = 108.62, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = no, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_B041

description: Gene expression data from human breast cancer tissue B041

tag: Alter = 47, Year_of_Diagnosis = 1991, Gender = f, pT = 1C, pN = 0, pM = X, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 1, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 90, OS_Months = 106, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: Rhesus heart 1 (replicate b)

tag: Rhesus heart 1 (replicate b)


title: Rhesus heart 2 (replicate A)

tag: Rhesus heart 2 (replicate A)


title: Chimp heart 5 (replicate A)

organism: Pan troglodytes

tag: Chimp heart 5 (replicate A)


title: _IDC_B037

description: Gene expression data from human breast cancer tissue B037

tag: Alter = 58, Year_of_Diagnosis = 1991, Gender = f, pT = 1C, pN = 1A, pM = 0, Number_of_asported_lymphnodes = 11, Number_of_positive_lyphnodes = 1, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 16.16, OS_Months = 56.74, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = no, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Rhesus heart 3 (replicate b)

tag: Rhesus heart 3 (replicate b)


title: Chimp heart 5 (replicate b)

tag: Chimp heart 5 (replicate b)


title: _IDC_B036

description: Gene expression data from human breast cancer tissue B036

tag: Alter = 39, Year_of_Diagnosis = 1992, Gender = f, pT = 2, pN = 1BII, pM = 0, Number_of_asported_lymphnodes = 29, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = 2, Status = lost_for_follow_up, Reason_of_death = NA, DFS_Months = 18, OS_Months = 122, , Epithel_Percentage = 80, Menopausal_status_at_First_Tumor_Diagnosis = premenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 2+, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Rhesus heart 3 (replicate A)

tag: Rhesus heart 3 (replicate A)


title: Chimp heart 4 (replicate b)

tag: Chimp heart 4 (replicate b)


title: Rhesus heart 6 (replicate b)

tag: Rhesus heart 6 (replicate b)


title: _IDC_B034

description: Gene expression data from human breast cancer tissue B034

tag: Alter = 76, Year_of_Diagnosis = 1991, Gender = f, pT = 3, pN = 0, pM = X, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 8, OS_Months = 8, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = NA, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA

tag: common reference sample


title: _IDC_B045

description: Gene expression data from human breast cancer tissue B045

tag: Alter = 68, Year_of_Diagnosis = 1990, Gender = f, pT = 1C, pN = 0, pM = X, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 3, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = NA, OS_Months = NA, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = NA, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: Chimp heart 3 (replicate b)

tag: Chimp heart 3 (replicate b)


title: _IDC_B048

description: Gene expression data from human breast cancer tissue B048

tag: Alter = 74, Year_of_Diagnosis = 1990, Gender = f, pT = 4, pN = 0, pM = 0, Number_of_asported_lymphnodes = 8, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 38.64, OS_Months = 51.15, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Chimp heart 6 (replicate b)

tag: Chimp heart 6 (replicate b)


title: Chimp heart 4 (replicate A)

tag: Chimp heart 4 (replicate A)


title: _IDC_B033

description: Gene expression data from human breast cancer tissue B033

tag: Alter = 53, Year_of_Diagnosis = 1992, Gender = f, pT = 3, pN = 1BIV, pM = 0, Number_of_asported_lymphnodes = 14, Number_of_positive_lyphnodes = 1, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = 2, Status = lost_for_follow_up, Reason_of_death = NA, DFS_Months = 133.88, OS_Months = 133.88, , Epithel_Percentage = 90, Menopausal_status_at_First_Tumor_Diagnosis = premenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = yes


title: Rhesus heart 1 (replicate A)

tag: Rhesus heart 1 (replicate A)


title: Chimp heart 2 (replicate b)

tag: Chimp heart 2 (replicate b)


title: _ILC_B032

description: Gene expression data from human breast cancer tissue B032

tag: Alter = 54, Year_of_Diagnosis = 1991, Gender = f, pT = 1(m), pN = 1BI, pM = 0, Number_of_asported_lymphnodes = 17, Number_of_positive_lyphnodes = 3, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 2, Diagnosis = ILC, Lymphocyte_infiltration = 1, Status = dead, Reason_of_death = tumoral, DFS_Months = 45.14, OS_Months = 152.05, , Epithel_Percentage = 80, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Chimp heart 3 (replicate A)

tag: Chimp heart 3 (replicate A)


title: _IDC_B028

description: Gene expression data from human breast cancer tissue B028

tag: Alter = 70, Year_of_Diagnosis = 1991, Gender = f, pT = 1C, pN = 1BIII, pM = 0, Number_of_asported_lymphnodes = 7, Number_of_positive_lyphnodes = 3, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 2, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 42.61, OS_Months = 48.69, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = 1, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _ILC_B026

description: Gene expression data from human breast cancer tissue B026

tag: Alter = 56, Year_of_Diagnosis = 1991, Gender = f, pT = 2, pN = 1BII, pM = 0, Number_of_asported_lymphnodes = 15, Number_of_positive_lyphnodes = 8, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = ILC, Lymphocyte_infiltration = 0, Status = dead, Reason_of_death = tumoral, DFS_Months = 31.74, OS_Months = 38.87, , Epithel_Percentage = 50, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_B027

description: Gene expression data from human breast cancer tissue B027

tag: Alter = 49, Year_of_Diagnosis = 1995, Gender = f, pT = 2, pN = 0, pM = 0, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = 2, Status = alive, Reason_of_death = NA, DFS_Months = 2, OS_Months = 117, , Epithel_Percentage = 80, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = yes


title: _IDC_B031

description: Gene expression data from human breast cancer tissue B031

tag: Alter = 66, Year_of_Diagnosis = 1991, Gender = f, pT = 2, pN = X, pM = 0, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 78, OS_Months = 122, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: _IDC_B023

description: Gene expression data from human breast cancer tissue B023

tag: Alter = 58, Year_of_Diagnosis = 1992, Gender = f, pT = 1, pN = 0, pM = 0, Number_of_asported_lymphnodes = 15, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = 3, Status = lost_for_follow_up, Reason_of_death = NA, DFS_Months = 122.48, OS_Months = 122.48, , Epithel_Percentage = 30, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Chimp heart 2 (replicate A)

description: Using the multi-species microarray, we compared gene expression levels within and between species in three tissues: Livers, Kidneys (cortex) and Heart muscle.

tag: Chimp heart 2 (replicate A)


title: Chimp heart 1 (replicate b)

tag: Chimp heart 1 (replicate b)


title: _IDC-mixed_B019

description: Gene expression data from human breast cancer tissue B019

tag: Alter = 60, Year_of_Diagnosis = 1992, Gender = f, pT = 2, pN = 0, pM = X, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC-mixed, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 140, OS_Months = 140, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = NA, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA

tag: common reference sample


title: Human heart 5 (replicate A)

tag: Human heart 5 (replicate A)


title: _IDC_B022

description: Gene expression data from human breast cancer tissue B022

tag: Alter = 59, Year_of_Diagnosis = 1993, Gender = f, pT = 2, pN = 1BIII, pM = 0, Number_of_asported_lymphnodes = 17, Number_of_positive_lyphnodes = 8, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 1, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 24.38, OS_Months = 39.13, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = 3, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Human heart 6 (replicate b)

tag: Human heart 6 (replicate b)


title: Chimp heart 6 (replicate A)

tag: Chimp heart 6 (replicate A)


title: _IDC_B017

description: Gene expression data from human breast cancer tissue B017

tag: Alter = 47, Year_of_Diagnosis = 1991, Gender = f, pT = 2, pN = 0, pM = 0, Number_of_asported_lymphnodes = X, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = 2, Status = dead, Reason_of_death = tumoral, DFS_Months = 29.37, OS_Months = 52.7, , Epithel_Percentage = 40, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = no, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Rhesus heart 2 (replicate b)

tag: Rhesus heart 2 (replicate b)


title: _ILC_B016

description: Gene expression data from human breast cancer tissue B016

tag: Alter = 51, Year_of_Diagnosis = 1993, Gender = f, pT = 1C, pN = 0, pM = 0, Number_of_asported_lymphnodes = 36, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 2, Diagnosis = ILC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 40.51, OS_Months = 100.76, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 2, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = no, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = yes


title: _IDC_B015

description: Gene expression data from human breast cancer tissue B015

tag: Alter = 70, Year_of_Diagnosis = 1990, Gender = f, pT = X, pN = X, pM = 0, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 2, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 6, OS_Months = 6, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = NA, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: _IDC_B038

description: Gene expression data from human breast cancer tissue B038

tag: Alter = 54, Year_of_Diagnosis = 1993, Gender = f, pT = 2, pN = 1BIV, pM = 0, Number_of_asported_lymphnodes = 20, Number_of_positive_lyphnodes = 8, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 3, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 15.47, OS_Months = 31.51, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 3, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Human heart 5 (replicate b)

tag: Human heart 5 (replicate b)


title: Chimp heart 1 (replicate A)

tag: Chimp heart 1 (replicate A)


title: _IDC_B013

description: Gene expression data from human breast cancer tissue B013

tag: Alter = 58, Year_of_Diagnosis = 1992, Gender = f, pT = 1C, pN = 1BIV, pM = 0, Number_of_asported_lymphnodes = 35, Number_of_positive_lyphnodes = 7, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = 1, Status = dead, Reason_of_death = tumoral, DFS_Months = 13, OS_Months = 23.43, , Epithel_Percentage = 90, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _ILC_B056

description: Gene expression data from human breast cancer tissue B056

tag: Alter = 69, Year_of_Diagnosis = 1991, Gender = f, pT = 1C, pN = 0, pM = X, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 3, Level_Progesteron_receptor_IHC = 2, Diagnosis = ILC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 156, OS_Months = 156, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = NA, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: Human heart 4 (replicate b)

tag: Human heart 4 (replicate b)


title: _IDC-mixed_B025

description: Gene expression data from human breast cancer tissue B025

tag: Alter = 37, Year_of_Diagnosis = 1993, Gender = f, pT = 1C, pN = 1BII, pM = 0, Number_of_asported_lymphnodes = 15, Number_of_positive_lyphnodes = 14, Level_Estrogen_receptor_IHC = 3, Level_Progesteron_receptor_IHC = 2, Diagnosis = IDC-mixed, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 0.56, OS_Months = 93.21, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = no, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_B024

description: Gene expression data from human breast cancer tissue B024

tag: Alter = 61, Year_of_Diagnosis = 1996, Gender = f, pT = 2, pN = 1BI, pM = 0, Number_of_asported_lymphnodes = 19, Number_of_positive_lyphnodes = 1, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 7.23, OS_Months = 10.25, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = 3, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = yes


title: _IDC_A108

description: Gene expression data from human breast cancer tissue A108

tag: Alter = 62, Year_of_Diagnosis = 1995, Gender = f, pT = 2, pN = 1BIV, pM = 0, Number_of_asported_lymphnodes = 8, Number_of_positive_lyphnodes = 3, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 0.66, OS_Months = 11.27, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = 3, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = no, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no

tag: common reference sample


title: Human heart 3 (replicate b)

tag: Human heart 3 (replicate b)


title: _IDC_A107

description: Gene expression data from human breast cancer tissue A107

tag: Alter = 66, Year_of_Diagnosis = 1991, Gender = f, pT = 4C, pN = 2, pM = 0, Number_of_asported_lymphnodes = 3, Number_of_positive_lyphnodes = 3, Level_Estrogen_receptor_IHC = 3, Level_Progesteron_receptor_IHC = 3, Diagnosis = IDC, Lymphocyte_infiltration = 0, Status = dead, Reason_of_death = tumoral, DFS_Months = 1.02, OS_Months = 18.37, , Epithel_Percentage = 80, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = no, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_B014

description: Gene expression data from human breast cancer tissue B014

tag: Alter = 56, Year_of_Diagnosis = 1991, Gender = f, pT = 2, pN = 0, pM = 0, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 3, Diagnosis = IDC, Lymphocyte_infiltration = 2, Status = NA, Reason_of_death = NA, DFS_Months = NA, OS_Months = NA, , Epithel_Percentage = 60, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = NA, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: Human heart 3 (replicate A)

tag: Human heart 3 (replicate A)


title: Human heart 2 (replicate b)

tag: Human heart 2 (replicate b)


title: Human heart 6 (replicate A)

tag: Human heart 6 (replicate A)


title: Human heart 4 (replicate A)

tag: Human heart 4 (replicate A)


title: _IDC-mixed_A106

description: Gene expression data from human breast cancer tissue A106

tag: Alter = 44, Year_of_Diagnosis = 1991, Gender = f, pT = X, pN = 1BI, pM = X, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 1, Diagnosis = IDC-mixed, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 103, OS_Months = 103, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = NA, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: _IDC_A105

description: Gene expression data from human breast cancer tissue A105

tag: Alter = 69, Year_of_Diagnosis = 1993, Gender = f, pT = 1C, pN = 0, pM = 0, Number_of_asported_lymphnodes = 19, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 3, Level_Progesteron_receptor_IHC = 2, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 5.03, OS_Months = 10.28, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 2, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = no, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Human heart 1 (replicate b)

tag: Human heart 1 (replicate b)


title: Human heart 2 (replicate A)

tag: Human heart 2 (replicate A)


title: _IDC_A103

description: Gene expression data from human breast cancer tissue A103

tag: Alter = 39, Year_of_Diagnosis = 1991, Gender = f, pT = 1C, pN = 1BI, pM = 0, Number_of_asported_lymphnodes = 16, Number_of_positive_lyphnodes = 1, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 2, Diagnosis = IDC, Lymphocyte_infiltration = 0, Status = lost_for_follow_up, Reason_of_death = NA, DFS_Months = 118.57, OS_Months = 167, , Epithel_Percentage = 90, Menopausal_status_at_First_Tumor_Diagnosis = premenopausal, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = yes


title: _IDC_A102

description: Gene expression data from human breast cancer tissue A102

tag: Alter = 45, Year_of_Diagnosis = 1990, Gender = f, pT = 1C, pN = 0, pM = 0, Number_of_asported_lymphnodes = X, Number_of_positive_lyphnodes = X, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 2, Diagnosis = IDC, Lymphocyte_infiltration = 0, Status = lebt_in_onkolg._Obs., Reason_of_death = NA, DFS_Months = 49, OS_Months = 160.16, , Epithel_Percentage = 90, Menopausal_status_at_First_Tumor_Diagnosis = premenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_A104

description: Gene expression data from human breast cancer tissue A104

tag: Alter = 72, Year_of_Diagnosis = 1991, Gender = f, pT = 4, pN = 0, pM = 0, Number_of_asported_lymphnodes = 15, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 2, Diagnosis = IDC, Lymphocyte_infiltration = 0, Status = dead, Reason_of_death = not_tumoral, DFS_Months = 55.72, OS_Months = 55.72, , Epithel_Percentage = 80, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = MRM, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Rhesus kidney 6 (replicate b)

description: Using the multi-species microarray, we compared gene expression levels within and between species in three tissues: Livers, Kidneys (cortex) and Heart muscle.

source_name: kidney

tag: Rhesus kidney 6 (replicate b)


title: Rhesus kidney 5 (replicate b)

tag: Rhesus kidney 5 (replicate b)


title: Human heart 1 (replicate A)

tag: Human heart 1 (replicate A)


title: _ILC_A101

description: Gene expression data from human breast cancer tissue A101

tag: Alter = 73, Year_of_Diagnosis = 1993, Gender = f, pT = 2, pN = 1BII, pM = 0, Number_of_asported_lymphnodes = 13, Number_of_positive_lyphnodes = 12, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 1, Diagnosis = ILC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 5.59, OS_Months = 11.1, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = no, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no

tag: common reference sample


title: _IDC_A099

description: Gene expression data from human breast cancer tissue A099

tag: Alter = 80, Year_of_Diagnosis = 1991, Gender = f, pT = 2, pN = 2, pM = X, Number_of_asported_lymphnodes = 15, Number_of_positive_lyphnodes = 3, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 1, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 28, OS_Months = 87, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = NA, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: Rhesus kidney 5 (replicate a)

tag: Rhesus kidney 5 (replicate a)


title: Rhesus kidney 3 (replicate b)

tag: Rhesus kidney 3 (replicate b)


title: _IDC_A097

description: Gene expression data from human breast cancer tissue A097

tag: Alter = 77, Year_of_Diagnosis = 1990, Gender = f, pT = 4B, pN = 2, pM = 0, Number_of_asported_lymphnodes = 24, Number_of_positive_lyphnodes = 24, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = dead, Reason_of_death = tumoral, DFS_Months = 76.68, OS_Months = 90.55, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Rhesus kidney 4 (replicate b)

tag: Rhesus kidney 4 (replicate b)


title: _IDC_A087

description: Gene expression data from human breast cancer tissue A087

tag: Alter = 76, Year_of_Diagnosis = 1990, Gender = f, pT = 1C, pN = 1BIII, pM = X, Number_of_asported_lymphnodes = 19, Number_of_positive_lyphnodes = 2, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 1, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 113, OS_Months = 113, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = NA, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: _IDC_A093

description: Gene expression data from human breast cancer tissue A093

tag: Alter = 69, Year_of_Diagnosis = 1991, Gender = f, pT = 2, pN = 1BIV, pM = 0, Number_of_asported_lymphnodes = 18, Number_of_positive_lyphnodes = 1, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = 1, Status = dead, Reason_of_death = tumoral, DFS_Months = 7.79, OS_Months = 21.16, , Epithel_Percentage = 80, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _ILC_A094

description: Gene expression data from human breast cancer tissue A094

tag: Alter = 57, Year_of_Diagnosis = 1991, Gender = f, pT = 3, pN = 1BIV, pM = 1, Number_of_asported_lymphnodes = 17, Number_of_positive_lyphnodes = 17, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = ILC, Lymphocyte_infiltration = 1, Status = dead, Reason_of_death = tumoral, DFS_Months = 3.29, OS_Months = 13.04, , Epithel_Percentage = 70, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_A096

description: Gene expression data from human breast cancer tissue A096

tag: Alter = 30, Year_of_Diagnosis = 1991, Gender = f, pT = 2, pN = 1BII, pM = 0, Number_of_asported_lymphnodes = 13, Number_of_positive_lyphnodes = 5, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 2, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = dead, Reason_of_death = tumoral, DFS_Months = 10.41, OS_Months = 74.15, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = premenopausal, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = 1, Neoadjuvant_PCT_with_Anthracyclin = yes, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Rhesus kidney 3 (replicate a)

tag: Rhesus kidney 3 (replicate a)


title: Rhesus kidney 4 (replicate a)

tag: Rhesus kidney 4 (replicate a)


title: Rhesus kidney 2 (replicate b)

tag: Rhesus kidney 2 (replicate b)


title: Rhesus kidney 2 (replicate a)

tag: Rhesus kidney 2 (replicate a)


title: Chimp kidney 6 (replicate a)

tag: Chimp kidney 6 (replicate a)


title: _IDC_A085

description: Gene expression data from human breast cancer tissue A085

tag: Alter = 63, Year_of_Diagnosis = 1993, Gender = f, pT = 1C, pN = 0, pM = 0, Number_of_asported_lymphnodes = 11, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 3, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 60.71, OS_Months = 113.74, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = no, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _mucinous_A082

description: Gene expression data from human breast cancer tissue A082

tag: Alter = 79, Year_of_Diagnosis = 1991, Gender = f, pT = 1C, pN = 1BII, pM = X, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 3, Level_Progesteron_receptor_IHC = 1, Diagnosis = mucinous, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = NA, OS_Months = NA, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: _IDC_A084

description: Gene expression data from human breast cancer tissue A084

tag: Alter = 63, Year_of_Diagnosis = 1991, Gender = f, pT = 4, pN = 0, pM = 1, Number_of_asported_lymphnodes = 8, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 0, OS_Months = 17.35, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = no, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no

tag: common reference sample


title: _IDC_A080

description: Gene expression data from human breast cancer tissue A080

tag: Alter = 38, Year_of_Diagnosis = 1992, Gender = f, pT = 1C, pN = 0, pM = 0, Number_of_asported_lymphnodes = 16, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = 2, Status = lost_for_follow_up, Reason_of_death = NA, DFS_Months = 127.18, OS_Months = 127.18, , Epithel_Percentage = 60, Menopausal_status_at_First_Tumor_Diagnosis = premenopausal, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _ILC_A078

description: Gene expression data from human breast cancer tissue A078

tag: Alter = 54, Year_of_Diagnosis = 1996, Gender = f, pT = X, pN = 2, pM = 0, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 2, Level_Progesteron_receptor_IHC = 2, Diagnosis = ILC, Lymphocyte_infiltration = 0, Status = dead, Reason_of_death = NA, DFS_Months = 10, OS_Months = 44, , Epithel_Percentage = 90, Menopausal_status_at_First_Tumor_Diagnosis = premenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = yes, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Chimp kidney 4 (replicate b)

tag: Chimp kidney 4 (replicate b)


title: Rhesus kidney 1 (replicate b)

tag: Rhesus kidney 1 (replicate b)


title: _IDC_A083

description: Gene expression data from human breast cancer tissue A083

tag: Alter = 64, Year_of_Diagnosis = 1992, Gender = f, pT = 4A, pN = 2, pM = 0, Number_of_asported_lymphnodes = 14, Number_of_positive_lyphnodes = 14, Level_Estrogen_receptor_IHC = 1, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 6.7, OS_Months = 20.21, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_A079

description: Gene expression data from human breast cancer tissue A079

tag: Alter = 51, Year_of_Diagnosis = 1991, Gender = f, pT = 2, pN = 1BIII, pM = 0, Number_of_asported_lymphnodes = 20, Number_of_positive_lyphnodes = 6, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 63.31, OS_Months = 76.52, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = 0, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_A075

description: Gene expression data from human breast cancer tissue A075

tag: Alter = 44, Year_of_Diagnosis = 1991, Gender = f, pT = 3, pN = 1BIV, pM = 1, Number_of_asported_lymphnodes = 32, Number_of_positive_lyphnodes = 11, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 36, OS_Months = 186, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = NA, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: _IDC_A074

description: Gene expression data from human breast cancer tissue A074

tag: Alter = 34, Year_of_Diagnosis = 1991, Gender = f, pT = 2, pN = 0, pM = X, Number_of_asported_lymphnodes = NA, Number_of_positive_lyphnodes = NA, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = NA, DFS_Months = 17, OS_Months = 17, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = NA, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = NA, Neoadjuvant_PCT_without_Anthracyclin = NA, Postoperative_Radiation = NA, Postop_adjuvant_Hormontherapy = NA, Adjuvant_PCT_with_Anthracyclin = NA, Adjuvant_PCT_without_Anthracyclin = NA


title: Chimp kidney 4 (replicate a)

description: Using the multi-species microarray, we compared gene expression levels within and between species in three tissues: Livers, Kidneys (cortex) and Heart muscle.

tag: Chimp kidney 4 (replicate a)


title: Rhesus kidney 6 (replicate a)

tag: Rhesus kidney 6 (replicate a)


title: _IDC_A070

description: Gene expression data from human breast cancer tissue A070

tag: Alter = 67, Year_of_Diagnosis = 1991, Gender = f, pT = 2, pN = 1BI, pM = 0, Number_of_asported_lymphnodes = 17, Number_of_positive_lyphnodes = 2, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = 2, Status = lost_for_follow_up, Reason_of_death = NA, DFS_Months = 126, OS_Months = 126, , Epithel_Percentage = 40, Menopausal_status_at_First_Tumor_Diagnosis = postmenopausal, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC_A069

description: Gene expression data from human breast cancer tissue A069

tag: Alter = 70, Year_of_Diagnosis = 1992, Gender = f, pT = 2, pN = 1BIV, pM = 0, Number_of_asported_lymphnodes = 14, Number_of_positive_lyphnodes = 2, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 0, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 17.28, OS_Months = 21.29, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = 3, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Chimp kidney 6 (replicate b)

tag: Chimp kidney 6 (replicate b)


title: Chimp kidney 5 (replicate a)

tag: Chimp kidney 5 (replicate a)


title: _IDC_A068

description: Gene expression data from human breast cancer tissue A068

tag: Alter = 53, Year_of_Diagnosis = 1993, Gender = f, pT = 1C, pN = 1BII, pM = 0, Number_of_asported_lymphnodes = 20, Number_of_positive_lyphnodes = 13, Level_Estrogen_receptor_IHC = 3, Level_Progesteron_receptor_IHC = 1, Diagnosis = IDC, Lymphocyte_infiltration = NA, Status = NA, Reason_of_death = tumoral, DFS_Months = 12.25, OS_Months = 41.1, , Epithel_Percentage = NA, Menopausal_status_at_First_Tumor_Diagnosis = NA, Surgical_method = MRM,_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = yes, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: _IDC-mixed_A067

description: Gene expression data from human breast cancer tissue A067

tag: Alter = 49, Year_of_Diagnosis = 1991, Gender = f, pT = 1C, pN = 0, pM = 0, Number_of_asported_lymphnodes = 16, Number_of_positive_lyphnodes = 0, Level_Estrogen_receptor_IHC = 0, Level_Progesteron_receptor_IHC = 3, Diagnosis = IDC-mixed, Lymphocyte_infiltration = 1, Status = lost_for_follow_up, Reason_of_death = NA, DFS_Months = 133.09, OS_Months = 133.09, , Epithel_Percentage = 80, Menopausal_status_at_First_Tumor_Diagnosis = premenopausal, Surgical_method = brusterhaltend_(Quadrantenresektion),_axill._Lymphadenektomie, Her2neu_DAKO = NA, Neoadjuvant_PCT_with_Anthracyclin = no, Neoadjuvant_PCT_without_Anthracyclin = no, Postoperative_Radiation = yes, Postop_adjuvant_Hormontherapy = no, Adjuvant_PCT_with_Anthracyclin = no, Adjuvant_PCT_without_Anthracyclin = no


title: Chimp kidney 3 (replicate a)

tag: Chimp kidney 3 (replicate a)