title: SAGE_Colon_carcinoma_CL_Hct116_wildtype_p53_Normal_Oxygen

description:
CGAP_Numeric_library_ID: 427
Tagging_enzyme: Mme I
Library_producer: ANITA LAL
Laboratory: RIGGINS LABORATORY AT DUKE UNIVERSITY MEDICAL CENTER

source_name: colon, carcinoma, cell line, extracted short sage

value: colon

value: unknown

value: cell line derived from colorectal carcinoma


title: SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES1

status: Public on Mar 20 2009

type: SAGE

anchor: NlaIII

city: Bethesda

first: Cancer Genome Anatomy Project

last: CGAP

state: MD

department: Cancer Genome Anatomy Project

country: USA

institute: National Cancer Institute

description:
CGAP_Numeric_library_ID: 844
Tagging_enzyme: BsmF I
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC

molecule: total RNA

organism: Homo sapiens

source_name: embryonic stem cell, normal, cell line, short sage, female, h9, wa09, mef

tag: organ/tissue

value: stem cell

tag: tissue preparation

value: cell line

tag: age

value: passage 38

tag: sex

value: female


title: SAGE_Embryonic_stem_cell_HES4_normal_p36_CL_SHE11

description:
CGAP_Numeric_library_ID: 1384
Tagging_enzyme: Mme I
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC

source_name: embryonic stem cell, normal, cell line, extracted short sage, male, hes4, es04, mef

value: male


title: SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES2

description:
CGAP_Numeric_library_ID: 1003
Tagging_enzyme: Mme I
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC

source_name: embryonic stem cell, normal, cell line, h9, wa09, female, extracted short sage


title: SAGE_Embryonic_stem_cell_BG01_normal_p20_CL_SHE19

description:
CGAP_Numeric_library_ID: 1604
Tagging_enzyme: Mme I
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC

source_name: embryonic stem cell, cell line, normal, bg01, male, extracted short sage

value: Passage 20 after derivation


title: SAGE_Colon_normal_B_NC2

description:
CGAP_Numeric_library_ID: 12
Tagging_enzyme: BsmF I
Old_library_name: SAGE_NC2
Library_producer: Lin Zhang
Laboratory: Ken Kinzler and Bert Vogelstein, Johns Hopkins Medical Institute

source_name: epithelium, normal, colon, non-normalized, short SAGE, bulk

value: bulk

tag: cell type

value: normal epithelium

tag: other information

value: Normal colonic epithelium


title: SAGE_Esophagus_Adenocarcinoma_B_CA1D

description:
CGAP_Numeric_library_ID: 2148
Tagging_enzyme: Mme I
Library_producer: Dr. Hector Alvarez
Laboratory: Dr. Gregory Riggins and Dr. Anirban Maitra

source_name: other, bulk, cancer, adenocarcinoma, esophagus, extracted short sage, adult, male

value: other

value: adenocarcinoma


title: SAGE_Embryonic_stem_cell_H14_normal_p22_CL_SHE14

description:
CGAP_Numeric_library_ID: 1334
Tagging_enzyme: Mme I
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC

source_name: embryonic stem cell, normal, cell line, h14, wa14, male, extracted short sage

value: passage 22


title: SAGE_Embryonic_stem_cell_H7_normal_p33_CL_SHE13

description:
CGAP_Numeric_library_ID: 1333
Tagging_enzyme: Mme I
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC

source_name: embryonic stem cell, normal, cell line, h7, wa07, female, extracted short sage

value: passage 33


title: SAGE_Embryonic_stem_cell_HSF6_normal_p50_CL_SHES9

description:
CGAP_Numeric_library_ID: 1332
Tagging_enzyme: Mme I
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC

source_name: embryonic stem cell, normal, cell line, hsf6, uc06, female, extracted short sage

value: passage 50


title: SAGE_Colon_carcinoma_CL_Hct116_p53_knockout_Normal_Oxygen

description:
CGAP_Numeric_library_ID: 426
Tagging_enzyme: Mme I
Library_producer: ANITA LAL
Laboratory: RIGGINS LABORATORY AT DUKE UNIVERSITY MEDICAL CENTER

value: colon


title: SAGE_Embryonic_stem_cell_HES3_normal_p16_CL_SHE10

description:
CGAP_Numeric_library_ID: 1331
Tagging_enzyme: Mme I
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC

source_name: embryonic stem cell, normal, cell line, hes3, es03, female, extracted short sage

value: passage 16


title: SAGE_Embryonic_stem_cell_H1_normal_p54_CL_SHE16

description:
CGAP_Numeric_library_ID: 1388
Tagging_enzyme: Mme I
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC

source_name: embryonic stem cell, normal, cell line, matrigel, extracted short sage, male, h1, wa01


title: SAGE_Colon_adenocarcinoma_CL_SW837

description:
CGAP_Numeric_library_ID: 5
Tagging_enzyme: BsmF I
Old_library_name: SAGE_SW837
Library_producer: Lin Zhang
Laboratory: Ken Kinzler and Bert Vogelstein, Johns Hopkins Medical Institute
References: L. Zhang et al., Science 276, 1268-1272 (1997) [PUBMED=9157888]

source_name: adenocarcinoma, colon, non-normalized, short SAGE, cell line

tag: mutations

value: RER- with mutant p53 (248arg-trp) mutant APC

value: Colon, cancer cell line. Mismatch proficient(RER-) with a mutant p53(248arg -> trp) and a mutant APC.


title: SAGE_Embryonic_stem_cell_H13_normal_p22_CL_SHE15

description:
CGAP_Numeric_library_ID: 1386
Tagging_enzyme: Mme I
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC

source_name: embryonic stem cell, normal, cell line, male, extracted short sage, h13, wa13, mef

value: stem cell

value: cell line


title: SAGE_Colon_carcinoma_CL_Hct116_p53_knockout_Anoxia

description:
CGAP_Numeric_library_ID: 428
Tagging_enzyme: Mme I
Library_producer: ANITA LAL
Laboratory: RIGGINS LABORATORY AT DUKEUNIVERSITY MEDICAL CENTER

value: unknown


title: SAGE_Colon_adenocarcinoma_CL_RKO

description:
CGAP_Numeric_library_ID: 6
Tagging_enzyme: BsmF I
Old_library_name: SAGE_RKO
Library_producer: Lin Zhang
Laboratory: Ken Kinzler and Bert Vogelstein, Johns Hopkins Medical Institute
References: L. Zhang et al., Science 276, 1268-1272 (1997) [PUBMED=9157888]

value: Wild type p53; RER+

value: Colon, cancer cell line.


title: SAGE_Colon_carcinoma_CL_Hct116_wildtype_p53_Anoxia

description:
CGAP_Numeric_library_ID: 425
Tagging_enzyme: Mme I
Library_producer: ANITA LAL
Laboratory: RIGGINS LABORATORY AT DUKE UNIVERSITY MEDICAL CENTER

value: cell line derived from colorectal carcinoma


title: SAGE_Colon_normal_B_NC1

description:
CGAP_Numeric_library_ID: 11
Tagging_enzyme: BsmF I
Old_library_name: SAGE_NC1
Library_producer: Lin Zhang
Laboratory: Ken Kinzler and Bert Vogelstein, Johns Hopkins Medical Institute
References: L. Zhang et al., Science 276, 1268-1272 (1997) [PUBMED=9157888]

value: bulk

value: normal epithelium


title: SAGE_Embryonic_stem_cell_H1_normal_p31_CL_SHE17

description:
CGAP_Numeric_library_ID: 1391
Tagging_enzyme: Mme I
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC

source_name: embryonic stem cell, normal, cell line, male, extracted short sage, h1, wa01, mef

value: male


title: SAGE_Colon_adenocarcinoma_CL_HCT116

description:
CGAP_Numeric_library_ID: 1
Tagging_enzyme: BsmF I
Old_library_name: SAGE_HCT116
Library_producer: Lin Zhang
Laboratory: Ken Kinzler and Bert Vogelstein, Johns Hopkins Medical Institute
References: L. Zhang et al., Science 276, 1268-1272 (1997) [PUBMED=9157888]

source_name: adenocarcinoma, colon, non-normalized, short sage, cell line

value: adenocarcinoma

value: Ras gene codon 13; wild type p53; RER+

value: cell line derived from colorectal carcinoma. ATCC:CCL-247. Mutation in the Ras gene, codon 13. Wild type p53. RER+


title: SAGE_Colon_adenocarcinoma_CL_Caco2

description:
CGAP_Numeric_library_ID: 2
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Caco_2
Library_producer: Lin Zhang
Laboratory: Ken Kinzler and Bert Vogelstein, Johns Hopkins Medical Institute
References: L. Zhang et al., Science 276, 1268-1272 (1997) [PUBMED=9157888]

value: RER- (replication error negitive cell line), has normal mismatch repair

value: Colon, colorectal carcinoma cell line (RER-), ATCC:HTB-37.


title: SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIEK0

description:
CGAP_Numeric_library_ID: 609
Tagging_enzyme: BsmF I
Library_producer: S. Malchenko
Laboratory: B. Soares Laboratory (University of Iowa),  contributed to the National Cancer Institute Genome Anatomy Project

source_name: cartilage, dedifferentiated, chondrosarcoma, metastasis, cell line, adult, female, short sage

value: cartilage

value: 45 years old

value: female

value: Dedifferentiated chondrosarcoma lung metastasis

value: Tissue section of lung right lower lobe, middle posterior metastatic lesion from 45 years old female with metastatic dedifferentiated chondrosarcoma were used to obtain mono-dispersed cells. The cell line was established from the cells after culturing in RPMI-1640 supplemented with 10% FBS and 0.1% gentamicin sulfate (Gemini Bioproducts). The cell line had gone through 4 doublings to yield 2 x 107 cells.  The cell line was routinely screened for mycoplasma sps. Using a PCR-based ELISA detection assay (Roche). Cell manipulations were always performed on 80-90% confluent cultures for consistency.  mRNA was isolated using a direct mRNA extraction kit.


title: SAGE_Colon_adenocarcinoma_B_Tu98

description:
CGAP_Numeric_library_ID: 14
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Tu98
Library_producer: Lin Zhang
Laboratory: Ken Kinzler and Bert Vogelstein, Johns Hopkins Medical Institute

source_name: adenocarcinoma, colon, non-normalized, short SAGE, bulk

value: colon

value: Colon, primary tumor


title: SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGX0

description:
CGAP_Numeric_library_ID: 610
Tagging_enzyme: BsmF I
Library_producer: S. Malchenko
Laboratory: B. Soares Laboratory (University of Iowa),  contributed to the National Cancer Institute Genome Anatomy Project

value: cell line

value: Tissue section of lung left lower lobe, diaphragmatic anterior metastatic lesion from 45 years old female with metastatic dedifferentiated chondrosarcoma were used to obtain mono-dispersed cells. The cell line was established from the cells after culturing in RPMI-1640 supplemented with 10% FBS and 0.1% gentamicin sulfate (Gemini Bioproducts). The cell line had gone through 4 doublings to yield 2 x 107 cells.  The cell line was routinely screened for mycoplasma sps. Using a PCR-based ELISA detection assay (Roche). Cell manipulations were always performed on 80-90% confluent cultures for consistency.  mRNA was isolated using a direct mRNA extraction kit.


title: SAGE_Cartilage_chondrosarcoma_grade_2_CL_UIGE0

description:
CGAP_Numeric_library_ID: 605
Tagging_enzyme: BsmF I
Library_producer: S. Malchenko
Laboratory: B. Soares Laboratory (University of Iowa),  contributed to the National Cancer Institute Genome Anatomy Project

source_name: cartilage, chondrosarcoma, grade ii, cell line, adult, male, short sage

value: 28 years old

value: chondrosarcoma grade 2.

value: Tissue section of nterior medial aspect of the pelvis from 28 years old male with grade 2 recurrent chondrosarcoma was divided, by gross analysis, into a fibrosis-like sample and was used to obtain mono-dispersed cells. The cell line was established from the cells after culturing in growth medium that contains heat inactivated FBS (Life Technologies Gibco) (12%), DMEM, glucose (4.5 gm/l), HEPES buffer (25 mM) solution and gentamicin sulfate (50 â▌g/ml) (Gemini Bioproducts). The cell line had gone through 4 doublings to yield 2 x 107 cells.  The cell line was routinely screened for mycoplasma sps. Using a PCR-based ELISA detection assay (Roche). Cell manipulations were always performed on 80-90% confluent cultures for consistency.  mRNA was isolated using a direct mRNA extraction kit.


title: SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGP0

description:
CGAP_Numeric_library_ID: 607
Tagging_enzyme: BsmF I
Library_producer: S. Malchenko
Laboratory: B. Soares Laboratory (University of Iowa),  contributed to the National Cancer Institute Genome Anatomy Project

source_name: cartilage, metastasis, dedifferentiated, chondrosarcoma, cell line, adult, female, short sage

value: Tissue section of lung right upper lobe, apical lateral metastatic lesion from 45 years old female with metastatic dedifferentiated chondrosarcoma were used to obtain mono-dispersed cells. The cell line was established from the cells after culturing in RPMI-1640 supplemented with 10% FBS and 0.1% gentamicin sulfate (Gemini Bioproducts). The cell line had gone through 4 doublings to yield 2 x 107 cells.  The cell line was routinely screened for mycoplasma sps. Using a PCR-based ELISA detection assay (Roche). Cell manipulations were always performed on 80-90% confluent cultures for consistency.  mRNA was isolated using a direct mRNA extraction kit.


title: SAGE_Colon_adenocarcinoma_B_Tu102

description:
CGAP_Numeric_library_ID: 13
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Tu102
Library_producer: Lin Zhang
Laboratory: Ken Kinzler and Bert Vogelstein, Johns Hopkins Medical Institute

value: bulk

value: adenocarcinoma


title: SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGD0

description:
CGAP_Numeric_library_ID: 608
Tagging_enzyme: BsmF I
Library_producer: S. Malchenko
Laboratory: B. Soares Laboratory (University of Iowa),  contributed to the National Cancer Institute Genome Anatomy Project

value: Tissue section of lung right lower lobe, middle diaphragmatic metastatic lesion from 45 years old female with metastatic dedifferentiated chondrosarcoma were used to obtain mono-dispersed cells. The cell line was established from the cells after culturing in RPMI-1640 supplemented with 10% FBS and 0.1% gentamicin sulfate (Gemini Bioproducts). The cell line had gone through 4 doublings to yield 2 x 107 cells.  The cell line was routinely screened for mycoplasma sps. Using a PCR-based ELISA detection assay (Roche). Cell manipulations were always performed on 80-90% confluent cultures for consistency.  mRNA was isolated using a direct mRNA extraction kit.


title: SAGE_Breast_normal_stroma_B_IDC8

description:
CGAP_Numeric_library_ID: 1963
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, MD,PhD, Dana-Farber Cancer Institute

source_name: breast, stroma, normal, bulk, extracted short sage, adult, female

value: mammary gland


title: SAGE_Cartilage_chondrosarcoma_grade_2_CL_UIFU0

description:
CGAP_Numeric_library_ID: 603
Tagging_enzyme: BsmF I
Library_producer: S. Malchenko
Laboratory: B. Soares Laboratory (University of Iowa),  contributed to the National Cancer Institute Genome Anatomy Project

source_name: cartilage,  cell line, chondrosarcoma, grade ii, male, adult, short sage

value: cartilage

value: male

value: Tissue section of nterior medial aspect of the pelvis from 28 years old male with grade 2 recurrent chondrosarcoma was divided, by gross analysis, into a cartilage-like sample and was used to obtain mono-dispersed cells. The cell line was established from the cells after culturing in growth medium that contains heat inactivated FBS (Life Technologies Gibco) (12%), DMEM, glucose (4.5 gm/l), HEPES buffer (25 mM) solution and gentamicin sulfate (50 â▌g/ml) (Gemini Bioproducts). The cell line had gone through 4 doublings to yield 2 x 107 cells.  The cell line was routinely screened for mycoplasma sps. Using a PCR-based ELISA detection assay (Roche). Cell manipulations were always performed on 80-90% confluent cultures for consistency.  mRNA was isolated using a direct mRNA extraction kit.


title: SAGE_Breast_normal_myoepithelium_CD10+_AP_N5

description:
CGAP_Numeric_library_ID: 2388
Tagging_enzyme: Mme I
Library_producer: Noga Qimron MSc/ MIn Hu PhD, DFCI
Laboratory: Polyak Lab, DFCI

source_name: human, breast/mammary gland, antibody purified, normal, normal breast tissue reduction, cd10+ mammary myoepithelial cells, adult, extracted short sage

value: antibody purified

value: female

value: Normal breast tissue reduction

value: cells purified using CD10 antibody, these cells are CD10+ mammary myoepithelial cells


title: SAGE_Cartilage_chondrosarcoma_grade_3_CL_UIIA0

description:
CGAP_Numeric_library_ID: 1368
Tagging_enzyme: BsmF I
Library_producer: S. Malchenko
Laboratory: B. Soares laboratory (University of Iowa) contributed to the National Cancer Institute Genome Anatomy Project

source_name: cartilage, chondrosarcoma, grade iii, cell line, adult, male, short sage

value: cell line


title: SAGE_Breast_normal_organoid_B

description:
CGAP_Numeric_library_ID: 182
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute

source_name: mammary gland, bulk, normal, non-normalized, short SAGE

value: normal breast organoid

value: Normal breast organoids from reduction mammoplasty.


title: SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIFK0

description:
CGAP_Numeric_library_ID: 606
Tagging_enzyme: BsmF I
Library_producer: S. Malchenko
Laboratory: B. Soares Laboratory (University of Iowa),  contributed to the National Cancer Institute Genome Anatomy Project

value: 45 years old

value: Dedifferentiated chondrosarcoma lung metastasis

value: Tissue section of lung right middle lobe, upper anterior   metastatic lesion from 45 years old female with metastatic dedifferentiated chondrosarcoma were used to obtain mono-dispersed cells. The cell line was established from the cells after culturing in RPMI-1640 supplemented with 10% FBS and 0.1% gentamicin sulfate (Gemini Bioproducts). The cell line had gone through 4 doublings to yield 2 x 107 cells.  The cell line was routinely screened for mycoplasma sps. Using a PCR-based ELISA detection assay (Roche). Cell manipulations were always performed on 80-90% confluent cultures for consistency.  mRNA was isolated using a direct mRNA extraction kit.


title: SAGE_Breast_normal_myoepithelium_CD10+_AP_IDC7

description:
CGAP_Numeric_library_ID: 420
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, M.D., Ph.D.
Laboratory: Polyak lab, Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]

source_name: breast, normal, myoepithelium, antibody purified, extracted short sage, adult, female

value: normal breast tissue from a breast cancer patient (corresponding to IDC7)

value: CD10 positive purified myoepithelial cells. Short tags extracted from long. Library name in Cancer Cell, 2004, 6(1):17-32 "N-MYO-I7 myoepithelial cells"


title: SAGE_Breast_normal_FS_NER

description:
CGAP_Numeric_library_ID: 669
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak, MD,PhD
Laboratory: Polyak laboratory Dana-Farber Cancer Institute
References: Seth et al. Cancer Res. 64:4540-4544. 2002 [PUBMED=12183401]

source_name: breast, normal, epithelium, flow-sorted, short SAGE, female, adult

value: flow-sorted

value: estrogen responsive cells purified from normal mammary epithelium


title: SAGE_Breast_normal_myoepithelium_CD10+_AP_N15

description:
CGAP_Numeric_library_ID: 2396
Tagging_enzyme: Mme I
Library_producer: Noga Qimron MSc/ MIn Hu PhD, DFCI
Laboratory: Polyak Lab, DFCI

source_name: human, breast/mammary gland, antibody purified, normal, normal breast tissue reduction, cd10+ mammary myoepithelial cells, female, adult, extracted short sage

value: mammary gland


title: SAGE_Cartilage_chondrosarcoma_grade_1_CL_UIIC0

description:
CGAP_Numeric_library_ID: 1369
Tagging_enzyme: BsmF I
Library_producer: S. Malchenko
Laboratory: B. Soares laboratory (University of Iowa) contributed to the National Cancer Institute Genome Anatomy Project

source_name: cartilage, chondrosarcoma, grade i, cell line, adult, male, short sage

value: cartilage

value: male


title: SAGE_Breast_phyllodes_tumor_fibroblasts_AP_070202

description:
CGAP_Numeric_library_ID: 1168
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, MD,PhD
Laboratory: Polyak laboratory Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]

source_name: breast, neoplasia, high grade, poorly differentiated, bulk, extracted short sage, adult, female

value: bulk

value: recurrent phyllodes tumor, malignant, high grade, poorly differentiated

value: Library name in Cancer Cell, 2004, 6(1):17-32 "PHY"


title: SAGE_Breast_normal_stroma_AP_1

description:
CGAP_Numeric_library_ID: 183
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute

source_name: mammary gland, stroma, normal, antibody purified, non-normalized, short sage

value: antibody purified

value: female

value: normal breast stroma

value: Normal breast tissue from reduction mammoplasty. Library name in Cancer Cell, 2004, 6(1):17-32 "N-STR-1-fibroblasts"


title: SAGE_Breast_normal_myoepithelium_CD10+_AP_N1

description:
CGAP_Numeric_library_ID: 131
Tagging_enzyme: BsmF I
Old_library_name: SAGE_breast_myoepithelial
Library_producer: Dale Porter, Ph.D.
Laboratory: Polyak lab, Dana-Farber Cancer Institute

source_name: mammary gland, myoepithelium, normal, antibody purified, non-normalized, short sage

value: breast myoepithelium

value: normal mammary myoepithelial cells from breast reduction tissue of a 27 year old female. Antibody purified with CD10 to obtain myoepithelial cells. Library name in Cancer Cell, 2004, 6(1):17-32 "N-MYOEP-1 myoepithelial cells"


title: SAGE_Cartilage_chondrosarcoma_grade_2_B_UIGA0

description:
CGAP_Numeric_library_ID: 604
Tagging_enzyme: BsmF I
Library_producer: S. Malchenko
Laboratory: B. Soares Laboratory (University of Iowa),  contributed to the National Cancer Institute Genome Anatomy Project

source_name: cartilage, chondrosarcoma, grade ii, adult, male, bulk, short sage

value: 35 years old

value: chondrosarcoma grade 2.

value: Tissue section of left pelvis from 35 years old male with grade 2 recurrent chondrosarcoma was used for mRNA isolation.  mRNA was isolated using a direct mRNA extraction kit.


title: SAGE_Breast_normal_epithelium_MUC1+_AP_N5

description:
CGAP_Numeric_library_ID: 2386
Tagging_enzyme: Mme I
Library_producer: Noga Qimron MSc/ MIn Hu PhD, DFCI
Laboratory: Polyak Lab, DFCI

source_name: human, breast/mammary gland, antibody purified, normal, normal breast tissue reduction, muc1+ mammary epithelial cells, female, adult, extracted short sage

value: cells purified using MUC1 antibody, these cells are MUC1+ mammary epithelial cells


title: SAGE_Breast_normal_epithelium_CD24+_AP_N15

description:
CGAP_Numeric_library_ID: 2390
Tagging_enzyme: BsmF I
Library_producer: Noga Qimron MSc/ MIn Hu PhD, DFCI
Laboratory: Polyak Lab, DFCI

source_name: human, breast/mammary gland, antibody purified, normal, normal breast tissue reduction, cd24+ mammary epithelial cells, female, adult, extracted short sage

value: Normal breast tissue reduction

value: cells purified using CD24 antibody, these cells are CD24+ mammary epithelial cells


title: SAGE_Breast_normal_epithelium_CD44+_AP_N2

description:
CGAP_Numeric_library_ID: 2180
Tagging_enzyme: Mme I
Library_producer: Michail Shipitsin, PhD, DFCI
Laboratory: Polyak Lab, DFCI
References: Shipitsin et al. Cancer Cell 2007 11: 259-273. [PUBMED=17349583]

source_name: human, breast/mammary gland, antibody purified, normal, normal breast tissue reduction, adult, female, extracted short sage

value: mammary gland

value: cells purified using CD44 antibody, these cells are CD44+ mammary epithelial stem cells


title: SAGE_Breast_normal_myoepithelium_CL_HME50

description:
CGAP_Numeric_library_ID: 2348
Tagging_enzyme: Mme I
Library_producer: Min Hu, PhD
Laboratory: Polyak Lab, Dana-Farber Cancer Institute, Boston, MA

source_name: human, breast/mammary gland, cell line, normal, spontenously immortalized mammary myoepithelial cell line from li-fraumeni patient, female, li-fraumeni patient (heterozygous tp53 mutation), short extracted sage

value: cell line

value: spontenously immortalized mammary myoepithelial cell line from Li-Fraumeni patient

value: Li-Fraumeni patient (heterozygous TP53 mutation)


title: SAGE_Breast_metastatic_carcinoma_B_LN1

description:
CGAP_Numeric_library_ID: 84
Tagging_enzyme: BsmF I
Old_library_name: SAGE_95-260
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute
References: D. A. Porter et al., Cancer Res 61, 5697-702 (2001) [PUBMED=11479200]

source_name: metastasis, mammary gland, carcinoma, breast, non-normalized, short sage, bulk

value: bulk

value: metastasis from breast tumor

value: Metastatic tumor (lymph node metastasis from breast primary tumor). Age at discovery of primary tumor:56.5 years, 10 postive lymph nodes, Primary tumor is 3 cm, histo grade = 3, nuclear grade = 3, ER-, PR-.


title: SAGE_Breast_normal_epithelium_CD24+_AP_N2

description:
CGAP_Numeric_library_ID: 2178
Tagging_enzyme: Mme I
Library_producer: Michail Shipitsin, PhD, DFCI
Laboratory: Polyak Lab, DFCI
References: Shipitsin et al. Cancer Cell 2007 11: 259-273. [PUBMED=17349583]

value: antibody purified

value: female

value: cells purified using CD24 antibody, these cells are CD24+ differentiated luminal epithelial cells


title: SAGE_Breast_carcinoma_MD_DCIS

description:
CGAP_Numeric_library_ID: 32
Tagging_enzyme: BsmF I
Old_library_name: SAGE_DCIS
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute
References: I. E. Krop et al., Proc Natl Acad Sci U S A 98, 9796-9801 (2001) [PUBMED=11481438]|D. A. Porter et al., Cancer Res 61, 5697-702 (2001) [PUBMED=11479200]

source_name: mammary gland, epithelium, ductal, in situ, carcinoma, microscope dissected, non-normalized, short SAGE

value: microscope dissected

value: ductal carcinoma in situ

value: Breast, macroscopically dissected (>90% pure)  high grade, comedo DCIS (ductal carcinoma in situ) of the breast obtained from a 67 year old female patient undergoing partial mastectomy. The tumor cells are estrogen and progesteron receptor positive


title: SAGE_Breast_normal_epithelium_MUC1+_AP_N15

description:
CGAP_Numeric_library_ID: 2394
Tagging_enzyme: Mme I
Library_producer: Noga Qimron MSc/ MIn Hu PhD, DFCI
Laboratory: Polyak Lab, DFCI

value: normal breast tissue reduction

value: cells purified using MUC1 antibody, these cells are MUC1+ mammary epithelial cells


title: SAGE_Breast_normal_epithelium_CD44+_AP_N5

description:
CGAP_Numeric_library_ID: 2392
Tagging_enzyme: Mme I
Library_producer: Noga Qimron MSc/ MIn Hu PhD, DFCI
Laboratory: Polyak Lab, DFCI

source_name: human, breast/mammary gland, antibody purified, normal, normal breast tissue reduction, cd44+ mammary epithelial cells, female, adult, extracted short sage

value: Normal breast tissue reduction


title: SAGE_Breast_normal_epithelium_BEREP4+_AP_N2

description:
CGAP_Numeric_library_ID: 47
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Br_N
Library_producer: Kornelia Polyak, M.D., Ph.D.
Laboratory: Polyak lab, Dana-Farber Cancer Institute

source_name: mammary gland, epithelium, ductal, normal, antibody purified, non-normalized, short sage

value: mammary gland

value: unknown

value: normal

value: Breast, normal luminal mammary epithelium, BerEp4 purified cells. Library name in Cancer Cell, 2004, 6(1):17-32 "n-EPI-2 epithelial cells"


title: SAGE_Breast_metastatic_carcinoma_B_LN2

description:
CGAP_Numeric_library_ID: 85
Tagging_enzyme: BsmF I
Old_library_name: SAGE_95-348
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute
References: D. A. Porter et al., Cancer Res 61, 5697-702 (2001) [PUBMED=11479200]

source_name: metastasis, mammary gland, carcinoma, non-normalized, short sage, bulk

value: carcinoma

value: Metastatic tumor (lymph node metastasis from breast primary tumor). Age at discovery of primary tumor:52.8 years, 16 postive lymph nodes.  Primary tumor is 3.2 cm, histo grade = 3, nuclear grade = 3, ER+, PR+.


title: SAGE_Breast_fibroadenoma_MD

description:
CGAP_Numeric_library_ID: 1167
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, MD,PhD
Laboratory: Polyak laboratory Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]

source_name: breast, benign neoplasia, microscope dissected, juvenile, female, extracted short sage

value: juvenile fibroadenoma

value: Library name in Cancer Cell, 2004, 6(1):17-32 "FA"


title: SAGE_Breast_normal_epithelium_CD24+_AP_N5

description:
CGAP_Numeric_library_ID: 2384
Tagging_enzyme: Mme I
Library_producer: Noga Qimron MSc/ MIn Hu PhD, DFCI
Laboratory: Polyak Lab, DFCI

value: antibody purified

value: cells purified using CD24 antibody, these cells are CD24+ mammary epithelial cells


title: SAGE_Breast_carcinoma_MD_LCIS

description:
CGAP_Numeric_library_ID: 1166
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, MD,PhD
Laboratory: Polyak laboratory Dana-Farber Cancer Institute

source_name: breast, carcinoma, microscope dissected, adult, female, extracted short sage

value: female

value: extensive LCIS


title: SAGE_Breast_normal_epithelium_BEREP4+_AP_N1

description:
CGAP_Numeric_library_ID: 31
Tagging_enzyme: BsmF I
Old_library_name: SAGE_mammary_epithelium
Library_producer: Kornelia Polyak, M.D., Ph.D.
Laboratory: Polyak lab, Dana-Farber Cancer Institute
References: D. A. Porter et al., Cancer Res 61, 5697-702 (2001) [PUBMED=11479200]|I. E. Krop et al., Proc Natl Acad Sci U S A 98, 9796-9801 (2001) [PUBMED=11481438]

value: normal epithelium

value: Normal human luminal mammary epithelial cells purified with Epithelial Enrich (BER-EP4 antibody conjugated to magnetic beads) tissue obtained from a 43 year old female patient undergoing reduction mammoplasty. Library name in Cancer Cell, 2004, 6(1):17-32 "N-EPI-1 epithelial cells"


title: SAGE_Breast_carcinoma_epithelium_X_MUC1+_AP

description:
CGAP_Numeric_library_ID: 2346
Tagging_enzyme: Mme I
Library_producer: Min Hu, PhD
Laboratory: Polyak Lab, Dana-Farber Cancer Institute, Boston, MA

source_name: human, breast/mammary gland, antibody purified, cancer, muc1 bead purified cells from mcf10dcis xenografts, female, 8q gain, cdkn1a and lrp1b homozygous deletions, extracted short sage

value: MUC1 bead purified cells from MCF10DCIS xenografts

value: 8q gain, CDKN1A and LRP1B homozygous deletions


title: SAGE_Breast_carcinoma_epithelium_PROCR+_AP_IDC29

description:
CGAP_Numeric_library_ID: 2164
Tagging_enzyme: Mme I
Library_producer: Michail Shipitsin, PhD, DFCI
Laboratory: Polyak lab, DFCI
References: Shipitsin et al. Cancer Cell 2007 11: 259-273. [PUBMED=17349583]

source_name: human, breast/mammary gland, antibody purified, cancer, invasive ductal carcinoma er+,pr+,her2-, female, adult, extracted short sage

value: invasive ductal carcinoma ER+,PR+,HER2-

value: cells purified using PROCR antibody, these cells are CD44+ breast "cancer stem" cells


title: SAGE_Breast_carcinoma_metastasis_B_2

description:
CGAP_Numeric_library_ID: 179
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak, M.D., Ph.D.
Laboratory: Polyak lab, Dana-Farber Cancer Institute

source_name: mammary gland, metastasis, bulk, carcinoma, non-normalized, short SAGE

value: mammary gland

value: bulk

value: breast carcinoma metastasis to lung

value: Grade III, ERpos, PRlow, Her2neg

value: Lung metastasis of a breast cancer.


title: SAGE_Breast_normal_B_gestational hyperplasia1

description:
CGAP_Numeric_library_ID: 132
Tagging_enzyme: BsmF I
Old_library_name: SAGE_breast_hyperplasia
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute

source_name: mammary gland, normal, pregnant, bulk, non-normalized, short sage

value: breast hyperplasia

value: normal mammary epithelium (gestational hyperplasia) from a 31 year old breast cancer patient (20 weeks pregnant).


title: SAGE_Breast_carcinoma_epithelium_CD44+_AP_ASC3

description:
CGAP_Numeric_library_ID: 2170
Tagging_enzyme: Mme I
Library_producer: Andrea Richardson, MD,PhD, BWH
Laboratory: Polyak Lab, DFCI
References: Shipitsin et al. Cancer Cell 2007 11: 259-273. [PUBMED=17349583]

source_name: human, breast/mammary gland, antibody purified, cancer, ascites, mixed lobular/ductal carcinoma, her2-, recurrence of er+ tumor, female, extracted short sage

value: antibody purified

value: unknown

value: Ascites, mixed lobular/ductal carcinoma, HER2-, recurrence of ER+ tumor

value: cells purified using CD44 antibody, these cells are CD44+ breast "cancer stem" cells


title: SAGE_Breast_carcinoma_epithelium_PROCR+_AP_IDC28

description:
CGAP_Numeric_library_ID: 2167
Tagging_enzyme: Mme I
Library_producer: Michail Shipitsin, PhD, DFCI
Laboratory: Polyak Lab, DFCI
References: Shipitsin et al. Cancer Cell 2007 11: 259-273. [PUBMED=17349583]

value: female

value: Invasive ductal carcinoma, high-grade, ER+,PR+,HER2-


title: SAGE_Breast_carcinoma_epithelium_CD24+_AP_IDC26

description:
CGAP_Numeric_library_ID: 2176
Tagging_enzyme: Mme I
Library_producer: Michail Shipitsin, DFCI
Laboratory: Polyak Lab, DFCI
References: Shipitsin et al. Cancer Cell 2007 11: 259-273. [PUBMED=17349583]

source_name: human, breast/mammary gland, antibody purified, cancer, invasive ductal carcinoma, er+,pr+,her2-, adult, female, extracted short sage

value: Invasive ductal carcinoma, ER+,PR+,HER2-

value: cells purified using CD24 antibody, these cells are CD24+ more differentiated breast cancer cells


title: SAGE_Breast_carcinoma_myoepithelium_X_ITGB6+_AP

description:
CGAP_Numeric_library_ID: 2344
Tagging_enzyme: Mme I
Library_producer: Min Hu, PhD
Laboratory: Polyak Lab, Dana-Farber Cancer Institute, Boston, MA

source_name: human, breast/mammary gland, antibody purified, cancer, itgb6 bead purified cells from mcf10dcis xenografts, female, 8q gain, cdkn1a and lrp1b homozygous deletions, extracted short sage

value: ITGB6 bead purified cells from MCF10DCIS xenografts

value: 8q gain, CDKN1A and LRP1B homozygous deletions


title: SAGE_Breast_carcinoma_epithelium_CD24+_AP_PE2

description:
CGAP_Numeric_library_ID: 2174
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, MD,PhD, DFCI
Laboratory: Polyak Lab, DFCI
References: Shipitsin et al. Cancer Cell 2007 11: 259-273. [PUBMED=17349583]

source_name: human, breast/mammary gland, antibody purified, cancer, pleural effusion, her2-, recurrence of er+ tumor, female, extracted short sage

value: mammary gland

value: Pleural effusion, HER2-, recurrence of ER+ tumor


title: SAGE_Breast_carcinoma_epithelium_CD44+_AP_PE2

description:
CGAP_Numeric_library_ID: 2172
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, MD,PhD, DFCI
Laboratory: Polyak Lab, DFCI
References: Shipitsin et al. Cancer Cell 2007 11: 259-273. [PUBMED=17349583]


title: SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS6

description:
CGAP_Numeric_library_ID: 153
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute

source_name: mammary gland, epithelium, ductal, carcinoma, antibody purified, non-normalized, short sage, female

value: breast  carcinoma epithelium

value: Extensive high-grade comedo DCIS (~8-10 cm). Purified using BerEP4 beads (Dynal).Library name in Cancer Cell, 2004, 6(1):17-32 "D-EPI-6 epithelial cells"


title: SAGE_Breast_carcinoma_CL_MCF7estradiol_3h

description:
CGAP_Numeric_library_ID: 78
Tagging_enzyme: BsmF I
Old_library_name: SAGE_SciencePark_MCF7_estradiol_3h
Laboratory: Marcelo Aldaz, M.D. Anderson Cancer Center

source_name: mammary gland, cell line, carcinoma

value: cell line

value: carcinoma


title: SAGE_Breast_carcinoma_epithelium_BerEP4+_AP_IDC9

description:
CGAP_Numeric_library_ID: 1163
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, MD,PhD
Laboratory: Polyak laboratory Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]

source_name: breast, carcinoma, antibody purified, epithelium, extracted short sage, female, adult

value: Grade I, ER+, PR+, Her2- invasive ductal carcinoma

value: BerEP4 purified epithelial cells from invasive breast cancer. Library name in Cancer Cell, 2004, 6(1):17-32 "I-EPI-9 epithelial cells"


title: SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS-3

description:
CGAP_Numeric_library_ID: 187
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute

source_name: mammary gland, epithelium, ductal, in situ, carcinoma, antibody purified, non-normalized, short sage

value: antibody purified

value: Breast, ductal carcinoma in situ, high-grade, comedo, Ber-EP4 purified cells. Library name in Cancer Cell, 2004, 6(1):17-32 "D-EPI-3 epithelial cells"


title: SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS-2

description:
CGAP_Numeric_library_ID: 46
Tagging_enzyme: BsmF I
Old_library_name: SAGE_DCIS_2
Library_producer: Kornelia Polyak, M.D., Ph.D.
Laboratory: Polyak lab, Dana-Farber Cancer Institute
References: D. A. Porter et al., Cancer Res 61, 5697-702 (2001) [PUBMED=11479200]|I. E. Krop et al., Proc Natl Acad Sci U S A 98, 9796-9801 (2001) [PUBMED=11481438]

value: unknown

value: Breast, DCIS, BerEp4 purified cells. Library name in Cancer Cell, 2004, 6(1):17-32 "D-EPI-2 epithelial cells"


title: SAGE_Breast_carcinoma_CL_MCF7control_0h

description:
CGAP_Numeric_library_ID: 77
Tagging_enzyme: BsmF I
Old_library_name: SAGE_SciencePark_MCF7_Control_0h
Laboratory: Marcelo Aldaz, M.D. Anderson Cancer Center

source_name: mammary gland, carcinoma, cell line, non-normalized, short SAGE, SAGE

value: female

value: Estrogen receptor positive MCF7 cells were grown in conditions devoid of estrogen for 48h (i.e. IMEM media supplemented with 10% Charcoal Stripped Serum). This SAGE library represents the 0h time point (i.e. baseline, untreated cells) of an estrogen exposure time course experiment.


title: SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS7

description:
CGAP_Numeric_library_ID: 157
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute

source_name: mammary gland, epithelium, carcinoma, antibody purified, non-normalized, short sage, female, adult

value: Invasive breast tumor(~2cm), extensive high-grade comedo DCIS (~4 cm), positive lymph nodes. Purified using BerEP4 beads (Dynal). Library name in Cancer Cell, 2004, 6(1):17-32 "D-EPI-7 epithelial cells"


title: SAGE_Breast_carcinoma_CL_MDA435H48

description:
CGAP_Numeric_library_ID: 672
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak, MD,PhD
Laboratory: Polyak laboratory Dana-Farber Cancer Institute
References: Krop et al. unpublished

source_name: breast, carcinoma, cell line, short SAGE, female, adult

value: ER negative breast cancer cell line

value: cells were collected 48 hours after expression of HIN-1


title: SAGE_Breast_carcinoma_epithelium_CD24+_AP_IDC28

description:
CGAP_Numeric_library_ID: 2168
Tagging_enzyme: Mme I
Library_producer: Michail Shipitsin, PhD, DFCI
Laboratory: Polyak Lab, DFCI
References: Shipitsin et al. Cancer Cell 2007 11: 259-273. [PUBMED=17349583]

source_name: human, breast/mammary gland, antibody purified, cancer, invasive ductal carcinoma, high-grade, er+,pr+,her2-, female, adult, extracted short sage

value: mammary gland

value: Invasive ductal carcinoma, high-grade, ER+,PR+,HER2-

value: cells purified using CD24 antibody, these cells are CD24+ more differentiated breast cancer cells


title: SAGE_Breast_carcinoma_CL_MDA435C

description:
CGAP_Numeric_library_ID: 670
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak, MD,PhD
Laboratory: Polyak laboratory Dana-Farber Cancer Institute
References: Krop et al. unpublished

value: ER neagtive breast cancer cell line


title: SAGE_Breast_carcinoma_epithelium_BerEP4+_AP_IDC8

description:
CGAP_Numeric_library_ID: 1165
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, MD,PhD
Laboratory: Polyak laboratory Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]

source_name: breast, carcinoma, epithelium, antibody purified, extracted short sage, female, adult

value: Grade II, ER+, PR+, Her2- tumor

value: BerEP4 purified epithelial cells from invasive breast cancer. Library name in Cancer Cell, 2004, 6(1):17-32 "I-EPI-8 epithelial cells"


title: SAGE_Breast_carcinoma_CL_MCF7estradiol_10H

description:
CGAP_Numeric_library_ID: 79
Tagging_enzyme: BsmF I
Old_library_name: SAGE_SciencePark_MCF7_estradiol_10h
Laboratory: Marcelo Aldaz, M.D. Anderson Cancer Center

source_name: mammary gland, carcinoma, cell line, non-normalized, short sage

value: cell line

value: carcinoma


title: SAGE_Breast_carcinoma_epithelium_BerEP4+AP_IDC7

description:
CGAP_Numeric_library_ID: 418
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, M.D., Ph.D.
Laboratory: Polyak lab, Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]

source_name: breast, epithelium, antibody purified, carcinoma, extracted short sage, adult, female

value: antibody purified

value: invasive breast cancer, ER+, PR+, Her-, grade II

value: BerEP4 purified epithelial cells


title: SAGE_Breast_carcinoma_B_IDC-4

description:
CGAP_Numeric_library_ID: 174
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute

source_name: mammary gland, ductal, invasive, high grade, carcinoma, non-normalized, short SAGE, bulk

value: bulk

value: breast carcinoma

value: Breast, invasive ductal carcinoma, high-grade, ERneg, erbB2neg., lymph node neg., p53pos.


title: SAGE_Breast_carcinoma_B_IDC-3

description:
CGAP_Numeric_library_ID: 173
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute

source_name: mammary gland, ductal, invasive, in situ, low grade, carcinoma, non-normalized, short SAGE, bulk

value: female

value: breast invasive ductal carcinoma

value: Invasive ductal carcinoma with some in situ component, low-grade, ER-positive, erbB22-negative, lymph node-negative, p53-negative.


title: SAGE_Breast_carcinoma_B_DCIS-5

description:
CGAP_Numeric_library_ID: 172
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute

source_name: mammary gland, epithelium, ductal, in situ, carcinoma, non-normalized, short SAGE, bulk

value: mammary gland

value: Ductal carcinoma in situ, high-grade, comedo from 32 yo woman.


title: SAGE_Breast_carcinoma_B_IDC-5

description:
CGAP_Numeric_library_ID: 175
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute

source_name: mammary gland, ductal, invasive, low grade, carcinoma, non-normalized, short SAGE, bulk

value: Breast, invasive ductal carcinoma, low-grade, ERpos, erbB2neg., lymph node neg., p53neg.


title: SAGE_Brain_oligodendroglioma_B_1001

description:
CGAP_Numeric_library_ID: 152
Tagging_enzyme: BsmF I
Library_producer: Saroj P. Mathupala, Ph.D.
Laboratory: Andrew E. Sloan, Department of Neurological Surgery, Wayne State University School of Medicine

source_name: cortex, oligodendroglioma, well differentiated, non-normalized, short SAGE, bulk

value: brain

value: oligodendroglioma

value: Tumor grade 2/4


title: SAGE_Breast_carcinoma_B_CT15_IDC

description:
CGAP_Numeric_library_ID: 423
Tagging_enzyme: Mme I
Library_producer: Anna Merlos-Suarez
Laboratory: Polyak

source_name: breast, carcinoma, ductal, invasive, bulk, extracted short sage, female, adult

value: 71 yrs

value: primary grade III. ductal invasive breast carcinoma

value: Short tags are extracted from the long SAGE data


title: SAGE_Breast_carcinoma_B_DCIS-4

description:
CGAP_Numeric_library_ID: 171
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute

source_name: mammary gland, epithelium, ductal, in situ, carcinoma, bulk, non-normalized, short SAGE

value: carcinoma

value: Ductal carcinoma in situ, high-grade, comedo.


title: SAGE_Brain_oligodendroglioma_B_H988

description:
CGAP_Numeric_library_ID: 43
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke-H988
Library_producer: Deric Olschner
Laboratory: Gregory Riggins, Duke University Medical Center

value: bulk

value: well-differentiated oligodendroglioma, frontal lobe, cortex

value: Brain, well differentiated oligodendroglioma


title: SAGE_Brain_normal_substantia_nigra_B_1

description:
CGAP_Numeric_library_ID: 421
Tagging_enzyme: Mme I
Library_producer: Deric Olschner
Laboratory: Riggins?Lab at Duke University Medical Center

source_name: brain, substantia nigra, normal, bulk, extracted short SAGE

value: unknown


title: SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC8

description:
CGAP_Numeric_library_ID: 1164
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, MD,PhD
Laboratory: Polyak laboratory Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]

source_name: mammary gland, myofibroblast, tumor associated, female, adult, extracted short sage, antibody purified

value: antibody purified

value: female

value: Grade II, ER+, PR+, Her2- tumor

value: CD10+ purified myofibroblasts from invasive breast cancer. Library name in Cancer Cell, 2004, 6(1):17-32 "I-MYOFIB-8 myofibroblasts"


title: SAGE_Breast_carcinoma_B_BWHT18_DCIS

description:
CGAP_Numeric_library_ID: 431
Tagging_enzyme: Mme I
Library_producer: Anna Merlos-Suarez
Laboratory: Polyak

source_name: breast, bulk, carcinoma, in situ, ductal, extracted short sage, adult, female

value: mammary gland

value: 44 yrs

value: primary ductal in situ breast carcinoma, intermediate grade

value: 1. Short SAGE tags are extracted from Long SAGE data.    2. Estrogen and progesteron receptor positive, erbB2 negative, 0/25 lymph nodes (no lymph node metastasis)


title: SAGE_Brain_normal_thalamus_B_1

description:
CGAP_Numeric_library_ID: 53
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_thalamus
Library_producer: I-Mei Siu
Laboratory: Gregory Riggins, Duke University Medical Center
References: Sui I-M, Lal A, and Riggins GJ: A Database for Normal Gene Expression in the Human Brain. Gene Expression Patterns 1:33-38 (2001)

source_name: normal, bulk, thalamus, non-normalized, short sage

value: brain

value: normal thalamus


title: SAGE_Breast_carcinoma_associated_stroma_B_IDC7

description:
CGAP_Numeric_library_ID: 419
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, M.D., Ph.D.
Laboratory: Polyak lab, Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]

source_name: breast, stroma, tumor associated, bulk, extracted short sage, adult, female

value: invasive breast cancer ER+, PR+, Her2-, grade II


title: SAGE_Breast_carcinoma_B_95-347

description:
CGAP_Numeric_library_ID: 82
Tagging_enzyme: BsmF I
Old_library_name: SAGE_95-347
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute
References: D. A. Porter et al., Cancer Res 61, 5697-702 (2001) [PUBMED=11479200]

source_name: mammary gland, ductal, carcinoma, non-normalized, short SAGE, bulk

value: carcinoma

value: ER+, PR+

value: Invasive ductal carcinoma - primary tumor.  Age at discovery 52.8 years, 16 postive lymph nodes, 3.2 cm primary tumor, histo grade = 3, nuclear grade = 3, ER+, PR+.


title: SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC7

description:
CGAP_Numeric_library_ID: 416
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, M.D., Ph.D.
Laboratory: Polyak lab, Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]

source_name: mammary gland, myofibroblast, antibody purified, tumor associated, adult, female, extracted short sage

value: ER+, PR+, HER2-, grade II


title: SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC9

description:
CGAP_Numeric_library_ID: 1169
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, MD,PhD
Laboratory: Polyak laboratory Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]

source_name: breast, myofibroblast, tumor associated, antibody purified, adult, female, extracted short sage

value: Grade I, ER+, PR+, Her2- invasive ductal

value: CD10+ purified myofibroblasts from invasive breast cancer  Library name in Cancer Cell, 2004, 6(1):17-32 "I-MYOFIB-9-myofibroblasts"


title: SAGE_Brain_normal_peds_cortex_B_H1571

description:
CGAP_Numeric_library_ID: 133
Tagging_enzyme: BsmF I
Old_library_name: SAGE_normal_pediatric_cortex_H1571
Library_producer: Deric Olschner
Laboratory: Gregory Riggins, Duke University Medical Center

source_name: brain, cortex, normal, non-normalized, short SAGE, bulk

value: bulk

value: male

value: normal pediatric cortex

value: Normal frontal cortex, bulk tissue, from 15 month male seizure patient (partial lobectomy).


title: SAGE_Breast_carcinoma_B_95-259

description:
CGAP_Numeric_library_ID: 83
Tagging_enzyme: BsmF I
Old_library_name: SAGE_95-259
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute
References: D. A. Porter et al., Cancer Res 61, 5697-702 (2001) [PUBMED=11479200]

value: mammary gland

value: female

value: ER-, PR-

value: Invasive ductal carcinoma - primary tumor.  Age at discovery 56.5 years, 10 postive lymph nodes, 3 cm primary tumor, histo grade = 3, nuclear grade = 3, ER-, PR-.


title: SAGE_Breast_carcinoma_associated_myoepithelium_CD10+_AP_DCIS6

description:
CGAP_Numeric_library_ID: 156
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute

source_name: mammary gland, myoepithelium, tumor associated, antibody purified, non-normalized, short sage, female

value: antibody purified

value: breast  carcinoma myoepithelium

value: Extensive high-grade comedo DCIS (~8-10cm). Purified using anti-CD10 antibody and magnetic beads (Dynal). Library name in Cancer Cell, 2004, 6(1):17-32 "D-MYOEP-6 myoepithelial cells"


title: SAGE_Breast_carcinoma_associated_stroma_B_DCIS6

description:
CGAP_Numeric_library_ID: 424
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, M.D., Ph.D.
Laboratory: Polyak lab, Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]

source_name: breast, stroma, tumor associated,  bulk. extracted short sage, adult, female

value: ductal carcinoma in situ, extensive, gradeIII, Her2+


title: SAGE_Breast_carcinoma_associated_myoepithelium_CD10+_AP_DCIS7

description:
CGAP_Numeric_library_ID: 158
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute

source_name: mammary gland, myoepithelium, tumor associated, antibody purified, non-normalized, short sage, adult, female

value: Invasive breast tumor (~2cm), extensive high-grade comedo DCIS (~4 cm), positive lymph nodes. Purified using anti-CD10 antibody and magnetic beads (Dynal). Library name in Cancer Cell, 2004, 6(1):17-32 "D-MYOEP-7 myoepithelial cells"


title: SAGE_Brain_normal_cortex_B_BB542

description:
CGAP_Numeric_library_ID: 8
Tagging_enzyme: BsmF I
Old_library_name: SAGE_BB542_whitematter
Library_producer: Anita Lal
Laboratory: Gregory Riggins, Duke University Medical Center
References: A. Lal et al., Cancer Res 59, 5403-7 (1999) [PUBMED=10554005]

source_name: cortex, normal, non-normalized, short SAGE, bulk

value: brain

value: normal whitematter, cerebral cortex

value: Brain, normal, greater than 95% white matter. Post-mortem delay of 3:15. 82 year old male.


title: SAGE_Brain_normal_cortex_B_pool6

description:
CGAP_Numeric_library_ID: 10
Tagging_enzyme: BsmF I
Old_library_name: SAGE_normal_pool(6th)
Library_producer: Anita Lal
Laboratory: Gregory Riggins, Duke University Medical Center
References: A. Lal et al., Cancer Res 59, 5403-7 (1999) [PUBMED=10554005]

value: normal, cerebral cortex

value: Brain, normal, pooled. TB-1017 derived from a 51 yo male and TB-1060 derived from a 17 yo male.


title: SAGE_Brain_normal_cerebellum_B_1

description:
CGAP_Numeric_library_ID: 34
Tagging_enzyme: BsmF I
Old_library_name: SAGE_normal_cerebellum
Library_producer: I-Mei Siu
Laboratory: Gregory Riggins, Duke University Medical Center
References: Sui I-M, Lal A, and Riggins GJ: A Database for Normal Gene Expression in the Human Brain. Gene Expression Patterns 1:33-38 (2001)

source_name: normal, cerebellum, bulk, non-normalized, short sage

value: cerebellum

value: bulk

value: normal cerebellum


title: SAGE_Brain_normal_cerebellum_B_BB542

description:
CGAP_Numeric_library_ID: 55
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_BB542_normal_cerebellum
Library_producer: I-Mei Siu
Laboratory: Gregory Riggins, Duke University Medical Center
References: Sui I-M, Lal A, and Riggins GJ: A Database for Normal Gene Expression in the Human Brain. Gene Expression Patterns 1:33-38 (2001)

value: unknown


title: SAGE_Brain_meningioma_grade_III_B_SF2366

description:
CGAP_Numeric_library_ID: 524
Tagging_enzyme: BsmF I
Library_producer: Anita Lal
Laboratory: Meningioma Research Laboratory, UCSF

source_name: brain, meningioma, grade iii, malignant, bulk, short sage

value: Malignant Meningioma


title: SAGE_Brain_normal_leptomeninges_B_AL2

description:
CGAP_Numeric_library_ID: 523
Tagging_enzyme: BsmF I
Library_producer: Anita Lal
Laboratory: Meningioma Research Laboratory, UCSF

source_name: brain, leptomeninges, normal, bulk, short sage

value: arachnoid cells, blood vessels, macrophages

value: autopsy leptomeninges


title: SAGE_Brain_meningioma_grade_I_B_SF4465

description:
CGAP_Numeric_library_ID: 525
Tagging_enzyme: BsmF I
Library_producer: Anita Lal
Laboratory: Meningioma Research Laboratory, UCSF

source_name: brain, meningioma, grade i, benign hyperplasia, bulk, short sage

value: benign meningioma of the meningothelial subtype


title: SAGE_Brain_Medulloblastoma_CL_UW228-V2

description:
CGAP_Numeric_library_ID: 2084
Tagging_enzyme: Mme I
Library_producer: Jennifer B. Edwards
Laboratory: Dr. Gregory Riggins

source_name: brain, cell line, medulloblastoma, cancer, extracted sage, female

value: cell line

value: female

value: Medulloblastoma


title: SAGE_Brain_medulloblastoma_CL_mhh-1

description:
CGAP_Numeric_library_ID: 18
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_mhh-1
Library_producer: I-Mei Siu
Laboratory: Gregory Riggins, Duke University Medical Center
References: T. Pietsch et al., Cancer Res 54, 3278-87 (1994) [PUBMED=8205550]

source_name: medulloblastoma, cerebellum, non-normalized, short sage, cell line

value: medulloblastoma, cerebellum

value: has pten mutation, negative on screens for 17p loss, negative for c-myc or n-myc amplification

value: Brain, cell line mhh-1


title: SAGE_Brain_meningioma_grade_II_B_SF2176

description:
CGAP_Numeric_library_ID: 528
Tagging_enzyme: BsmF I
Library_producer: Anita Lal
Laboratory: Meningioma Research Laboratory, UCSF

source_name: brain, meningioma, grade ii, malignant, bulk, short sage

value: brain

value: atypical meningioma


title: SAGE_Brain_medulloblastoma_CL_4-HCR

description:
CGAP_Numeric_library_ID: 303
Tagging_enzyme: BsmF I
Library_producer: KATHY BOON, PHD
Laboratory: RIGGINS LABORATORY DUKE
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]

source_name: cerebellum, medulloblastoma, cell line, short sage

value: medulloblastoma cell line


title: SAGE_Brain_meningioma_grade_I_B_SF4271

description:
CGAP_Numeric_library_ID: 526
Tagging_enzyme: BsmF I
Library_producer: Anita Lal
Laboratory: Meningioma Research Laboratory, UCSF


title: SAGE_Brain_Medulloblastoma_CL_UW228-N

description:
CGAP_Numeric_library_ID: 2124
Tagging_enzyme: Mme I
Library_producer: Jennifer B. Edwards
Laboratory: Dr. Gregory Riggins

source_name: brain, cell line, medulloblastoma, cancer, female, extracted short sage


title: SAGE_Brain_medulloblastoma_CL_H341

description:
CGAP_Numeric_library_ID: 19
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_H341
Library_producer: I-Mei Siu
Laboratory: Gregory Riggins, Duke University Medical Center
References: A. Lal et al., Cancer Res 59, 5403-7 (1999) [PUBMED=10554005]

source_name: cerebellum, medulloblastoma, cell line, non-normalized, short sage

value: cerebellum

value: c-myc oncogene genomic amplification

value: Brain, c-myc positive medulloblastoma cell line H341


title: SAGE_Brain_medulloblastoma_CL_D283

description:
CGAP_Numeric_library_ID: 243
Tagging_enzyme: BsmF I
Library_producer: Kathy Boon, PhD.
Laboratory: Riggins Laboratory Duke
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]

value: unknown


title: SAGE_Brain_Medulloblastoma_CL_425Otx2siRNA

description:
CGAP_Numeric_library_ID: 2130
Tagging_enzyme: Mme I
Library_producer: Jennifer B. Edwards, MS
Laboratory: Dr. Gregory Riggins

source_name: brain, cell line, medulloblastoma, cancer, male, extracted short sage

value: male

value: Medulloblatoma cell line treated with Otx2 siRNA.


title: SAGE_Brain_meningioma_grade_II_B_SF3622

description:
CGAP_Numeric_library_ID: 527
Tagging_enzyme: BsmF I
Library_producer: Anita Lal
Laboratory: Meningioma Research Laboratory, UCSF

value: bulk


title: SAGE_Brain_Medulloblastoma_CL_425C2

description:
CGAP_Numeric_library_ID: 2086
Tagging_enzyme: Mme I
Library_producer: Jennifer B. Edwards
Laboratory: Dr. Gregory Riggins

source_name: brain, cell line, medulloblastoma, cancer, extracted sage, male

value: Medulloblastoma Cell Line


title: SAGE_Breast_carcinoma_CL_MDA435H24

description:
CGAP_Numeric_library_ID: 671
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak, MD,PhD
Laboratory: Polyak laboratory Dana-Farber Cancer Institute
References: Krop et al. unpublished

source_name: breast, carcinoma, cell line, short SAGE, female, adult

value: mammary gland

value: cell line

value: ER negative breast cancer cell line

value: cells were collected 24 hours after expression of HIN-1


title: SAGE_Brain_medulloblastoma_B_H275

description:
CGAP_Numeric_library_ID: 397
Tagging_enzyme: BsmF I
Library_producer: KATHY BOON, PHD
Laboratory: RIGGINS LABORATORY DUKE
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]

source_name: cerebellum, medulloblastoma, bulk, short sage, adult, female

value: female

value: medulloblastoma


title: SAGE_Brain_medulloblastoma_B_H306

description:
CGAP_Numeric_library_ID: 383
Tagging_enzyme: BsmF I
Library_producer: KATHY BOON, PHD
Laboratory: RIGGINS LABORATORY at DUKE
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]

source_name: cerebellum, medulloblastoma, bulk, short sage, female, juvenile

value: 12 yrs


title: SAGE_Brain_medulloblastoma_B_H972

description:
CGAP_Numeric_library_ID: 263
Tagging_enzyme: BsmF I
Library_producer: KATHY BOON, PHD
Laboratory: Laboratory of Gregory Riggins, M.D., Ph.D.
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]

source_name: cerebellum, medulloblastoma, bulk, short sage, male, juvenile

value: medulloblastoma,


title: SAGE_Brain_medulloblastoma_B_H876

description:
CGAP_Numeric_library_ID: 415
Tagging_enzyme: BsmF I
Library_producer: KATHY BOON, PHD
Laboratory: RIGGINS LABORATORY DUKE
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]

value: 10 yrs

value: large cell medulloblastoma


title: SAGE_Brain_medulloblastoma_B_H484

description:
CGAP_Numeric_library_ID: 407
Tagging_enzyme: BsmF I
Library_producer: KATHY BOON, PHD
Laboratory: RIGGINS LABORATORY DUKE
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]

value: cerebellum

value: 5 yrs

value: anaplastic medulloblastoma


title: SAGE_Brain_medulloblastoma_B_98-04-P117

description:
CGAP_Numeric_library_ID: 411
Tagging_enzyme: BsmF I
Library_producer: KATHY BOON, PHD. & JENNIFER B. EDWARDS, MS
Laboratory: RIGGINS LABORATORY DUKE
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]

value: male


title: SAGE_Brain_medulloblastoma_B_H1413

description:
CGAP_Numeric_library_ID: 401
Tagging_enzyme: BsmF I
Library_producer: KATHY BOON, PHD
Laboratory: RIGGINS LABORATORY DUKE
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]

value: 3.1 yrs


title: SAGE_Brain_medulloblastoma_B_98-13-P301

description:
CGAP_Numeric_library_ID: 410
Tagging_enzyme: BsmF I
Library_producer: JENNIFER B. EDWARDS, MS
Laboratory: RIGGINS LABORATORY DUKE
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]

source_name: cerebellum, medulloblastoma, bulk, metastasis, short sage, male, juvenile

value: bulk


title: SAGE_Brain_medulloblastoma_B_98-04-P494

description:
CGAP_Numeric_library_ID: 125
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_98-04-P494
Library_producer: Jennifer B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]

source_name: medulloblastoma, cerebellum, bulk, non-normalized, short sage

value: medulloblastoma, cerebellum


title: SAGE_Brain_medulloblastoma_B_DL5

description:
CGAP_Numeric_library_ID: 399
Tagging_enzyme: BsmF I
Library_producer: KATHY BOON, PHD
Laboratory: RIGGINS LABORATORY DUKE
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]

value: desmoplastic medulloblastoma


title: SAGE_Brain_medulloblastoma_B_98-05-P608

description:
CGAP_Numeric_library_ID: 124
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_98-05-P608
Library_producer: Kathy Boon
Laboratory: Gregory Riggins, Duke University Medical Center
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]


title: SAGE_Brain_medulloblastoma_B_H1322

description:
CGAP_Numeric_library_ID: 412
Tagging_enzyme: BsmF I
Library_producer: KATHY BOON, PHD
Laboratory: RIGGINS LABORATORY DUKE
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]

source_name: cerebellum, medulloblastoma, metastasis, bulk, short sage, male, juvenile

value: 2.1 yrs


title: SAGE_Brain_medulloblastoma_B_98-05-P040

description:
CGAP_Numeric_library_ID: 413
Tagging_enzyme: BsmF I
Library_producer: KATHY BOON, PHD
Laboratory: RIGGINS LABORATORY DUKE
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]


title: SAGE_Brain_medulloblastoma_B_97-05-P312

description:
CGAP_Numeric_library_ID: 408
Tagging_enzyme: BsmF I
Library_producer: JENNIFER B. EDWARDS, MS
Laboratory: RIGGINS LABORATORY DUKE
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]

value: 7 yrs


title: SAGE_Brain_medulloblastoma_B_C609

description:
CGAP_Numeric_library_ID: 414
Tagging_enzyme: BsmF I
Library_producer: KATHY BOON, PHD. & JENNIFER B. EDWARDS, MS
Laboratory: RIGGINS LABORATORY DUKE
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]

value: 6 yrs


title: SAGE_Brain_medulloblastoma_B_DL7

description:
CGAP_Numeric_library_ID: 400
Tagging_enzyme: BsmF I
Library_producer: JENNIFER B. EDWARDS, MS
Laboratory: RIGGINS LABORATORY DUKE
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]


title: SAGE_Brain_medulloblastoma_B_1273

description:
CGAP_Numeric_library_ID: 51
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_1273
Library_producer: I-Mei Siu
Laboratory: Gregory Riggins, Duke University Medical Center

source_name: medulloblastoma, cerebellum, bulk, non-normalized, short SAGE

value: medulloblastoma grade IV


title: SAGE_Brain_medulloblastoma_B_96-04-P019

description:
CGAP_Numeric_library_ID: 123
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_96-04-P019
Library_producer: Jennifer B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center


title: Normal, No cancer, Sample Normal Colon Control, Chip R38430

type: RNA

city: San Diego

first: Jack

last: Yu

state: CA

address: 3210 Merryfield Row

institute: Veridex, LLC

description: colon tissue

hyb_protocol: standard Ambion procedures

scan_protocol: standard Agilent 2505B confocol laser scanner

data_processing: Codelink Expression Analysis software, quantile normalization

source_name: colon

label_protocol: Approximately 5 µg of total RNA was processed to produce Cy3 -labeled cRNA targets.

extract_protocol: Total RNA was extracted from cell samples using the Trizol Kit.

tag: DNA CHIP2 ID

tag: Image File

tag: Sample ID

value: Normal Colon Control

tag: Sample stage

value: Normal

tag: Cancer

value: No


title: SAGE_Brain_glioblastoma_CS_TA2

description:
CGAP_Numeric_library_ID: 565
Tagging_enzyme: BsmF I
Library_producer: Tracy-Ann Read
Laboratory: Gregory Riggins, Duke University Medical Center
References: I. E. Krop et al., Proc Natl Acad Sci U S A 98, 9796-9801 (2001) [PUBMED=11481438]

source_name: brain, glioblastoma multiforme, short term culture, adult, male, short sage

value: brain

value: short term culture

value: GBM


title: Duke A, Cancer, Sample 1YRNPABK, Chip R38429

description: colon tissue

value: Duke A

value: Yes


title: Normal, No cancer, Sample 7NUSVNTN, Chip R38428

description: colon tissue


title: SAGE_Brain_glioblastoma_control_CL_H247

description:
CGAP_Numeric_library_ID: 41
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_H247_normal
Library_producer: Anita Lal
Laboratory: Gregory Riggins, Duke University Medical Center
References: A. Lal et al., J Natl Cancer Inst 93, 1337-43 (2001) [PUBMED=11535709]

source_name: brain, glioblastoma multiforme, cell line, non-normalized, short SAGE

value: cell line

value: glioblastoma, cerebral cortex

value: negative for genomic amplification of EFGR, c-myc, n-myc and gli-1


title: Normal, No cancer, Sample AR9A7NL4, Chip R38427

description: colon tissue


title: SAGE_Brain_medulloblastoma_B_98-09-P558

description:
CGAP_Numeric_library_ID: 386
Tagging_enzyme: BsmF I
Library_producer: JENNIFER B. EDWARDS, MS
Laboratory: RIGGINS LABORATORY DUKE
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]

value: cerebellum

value: bulk

value: 9 yrs

value: female

value: medulloblastoma with neuroblastic differentiation


title: SAGE_Brain_glioblastoma_hypoxia_CL_H247

description:
CGAP_Numeric_library_ID: 42
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_H247_Hypoxia
Library_producer: Anita Lal
Laboratory: Gregory Riggins, Duke University Medical Center
References: A. Lal et al., J Natl Cancer Inst 93, 1337-43 (2001) [PUBMED=11535709]


title: SAGE_Brain_medulloblastoma_B_97-05-P015

description:
CGAP_Numeric_library_ID: 126
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_97-05-P015
Library_producer: Kathy Boon
Laboratory: Gregory Riggins, Duke University Medical Center
References: K.  Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene  22, 7687-94 (2003) [PUBMED=14576832]

source_name: medulloblastoma, cerebellum, bulk, non-normalized, short sage, male, juvenile

value: male

value: medulloblastoma, cerebellum


title: SAGE_Brain_glioblastoma_CL_H392

description:
CGAP_Numeric_library_ID: 3
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_H392
Library_producer: Anita Lal
Laboratory: Gregory Riggins, Duke University Medical Center
References: A. Lal et al., Cancer Res 59, 5403-7 (1999) [PUBMED=10554005]

source_name: brain, glioblastoma multiforme, non-normalized, short SAGE, cell line

value: No 17p loss or p53 mutations detected, Rasheed et al Can. Res. 54 p1324


title: SAGE_Brain_glioblastoma_CL_H54+EGFRvIII

description:
CGAP_Numeric_library_ID: 68
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_H54_EGFRvIII
Library_producer: Anita Lal
Laboratory: Gregory Riggins, Duke University Medical Center

value: glioblatastoma infected with  mutant EGFR, cerebral cortex

value: Brain, glioblastoma multiforme cell line, H54, that has been stably transfected with epidermal growth factor receptor vIII mutant


title: SAGE_Brain_glioblastoma_CL_4d

description:
CGAP_Numeric_library_ID: 1650
Tagging_enzyme: Mme I
Laboratory: Riggins lab
References: A. Lal et al., Cancer Res 59, 5403-7 (1999) [PUBMED=10554005]

source_name: brain, glioblastoma multiforme, cell line, extacted short sage

value: brain

value: unknown


title: SAGE_Brain_glioblastoma_CL_stem_cells

description:
CGAP_Numeric_library_ID: 1649
Tagging_enzyme: Mme I
Laboratory: Riggins lab
References: A. Lal et al., Cancer Res 59, 5403-7 (1999) [PUBMED=10554005]


title: Duke B, Cancer, Sample EIBU9AM5, Chip R38426

description: colon tissue

value: Duke B


title: SAGE_Brain_glioblastoma_B_R70

description:
CGAP_Numeric_library_ID: 359
Tagging_enzyme: BsmF I
Library_producer: Jennfier B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

source_name: brain, glioblastoma multiforme, bulk, short sage, adult, female

value: 53 yrs

value: Glioblastoma


title: SAGE_Brain_glioblastoma_CL_H54+LacZ

description:
CGAP_Numeric_library_ID: 67
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_H54_lacZ
Library_producer: Anita Lal
Laboratory: Gregory Riggins, Duke University Medical Center

value: cell line

value: glioblatastoma infected with LacZ control, cerebral cortex

value: Brain, glioblastoma multiforme cell line, H54, that has been stably transfected with the b-galactosidase gene


title: Duke A, Cancer, Sample C110, Chip R38425

description: colon tissue

value: Duke A

value: Yes


title: SAGE_Brain_glioblastoma_CL_28d

description:
CGAP_Numeric_library_ID: 1648
Tagging_enzyme: Mme I
Laboratory: Riggins lab
References: A. Lal et al., Cancer Res 59, 5403-7 (1999) [PUBMED=10554005]

source_name: brain, cell line, glioblastoma multiforme, extracted short sage


title: SAGE_Brain_glioblastoma_B_pooled

description:
CGAP_Numeric_library_ID: 7
Tagging_enzyme: BsmF I
Old_library_name: SAGE_pooled_GBM
Library_producer: Anita Lal
Laboratory: Gregory Riggins, Duke University Medical Center
References: A. Lal et al., Cancer Res 59, 5403-7 (1999) [PUBMED=10554005]

source_name: brain, glioblastoma multiforme, non-normalized, short SAGE, bulk

value: bulk

value: glioblastoma,  cerebral cortex

value: 5 pooled Duke glioblastoma multiforme primary tumors.


title: SAGE_Brain_glioblastoma_B_R20

description:
CGAP_Numeric_library_ID: 357
Tagging_enzyme: BsmF I
Library_producer: Maarten Leerkes
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

value: 67 yrs

value: female


title: SAGE_Brain_glioblastoma_B_R336

description:
CGAP_Numeric_library_ID: 358
Tagging_enzyme: BsmF I
Library_producer: Jennfier B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

source_name: brain, glioblastoma multiforme, bulk, short sage, adult, male

value: 65 yrs

value: male


title: Duke B, Cancer, Sample IHDNLAKU, Chip R38424

description: colon tissue

value: IHDNLAKU


title: SAGE_Brain_glioblastoma_B_H833

description:
CGAP_Numeric_library_ID: 356
Tagging_enzyme: BsmF I
Library_producer: Jennfier B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

value: brain

value: 78 yrs


title: Duke B, Cancer, Sample QLKH5A5O, Chip R38422

description: colon tissue

value: Duke B


title: SAGE_Brain_glioblastoma_B_H1425C

description:
CGAP_Numeric_library_ID: 352
Tagging_enzyme: BsmF I
Library_producer: Jennfier B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

value: 53 yrs

value: Glioblastoma


title: Duke B, Cancer, Sample S6TRKAX6, Chip R38423

description: colon tissue


title: FFPE-Duke C, Cancer, Sample NLKEIAE3, Chip R38421

description: colon tissue

value: FFPE-Duke C


title: SAGE_Brain_glioblastoma_B_H1371

description:
CGAP_Numeric_library_ID: 355
Tagging_enzyme: BsmF I
Library_producer: Jennfier B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

value: 80 yrs


title: FFPE-Duke C, Cancer, Sample BLUW6AJB, Chip R38418

description: colon tissue


title: Duke C, Cancer, Sample NLKEIAE3, Chip R38420

description: colon tissue

value: Duke C


title: FFPE-Duke B, Cancer, Sample ZYKTYATN, Chip R38419

description: colon tissue

value: ZYKTYATN

value: FFPE-Duke B

value: Yes


title: SAGE_Brain_glioblastoma_B_GBM1062

description:
CGAP_Numeric_library_ID: 86
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Ped_GBM1062
Library_producer: Christopher Turner
Laboratory: Gregory Riggins, Duke University Medical Center

source_name: brain, glioblastoma multiforme, bulk, non-normalized, short SAGE

value: bulk

value: 4 mo

value: pediatric glioblastoma, cerebral cortex

value: Lt. parietal occipital infantile CNS tumor consistent with glioblastoma multiforme


title: SAGE_Brain_glioblastoma_B_H1110

description:
CGAP_Numeric_library_ID: 4
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_GBM_H1110
Library_producer: Anita Lal
Laboratory: Gregory Riggins, Duke University Medical Center
References: A. Lal et al., Cancer Res 59, 5403-7 (1999) [PUBMED=10554005]

value: male

value: glioblastoma, Lt. Temporal, cerebral cortex


title: SAGE_Brain_glioblastoma_B_H1353

description:
CGAP_Numeric_library_ID: 354
Tagging_enzyme: BsmF I
Library_producer: Janete Cerutti/Kathy Boon
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

value: brain

value: 52 yrs

value: female


title: FFPE-Duke B, Cancer, Sample KSH3JALQ, Chip R38417

description: colon tissue


title: Duke C, Cancer, Sample ZERO1AZP, Chip R38416

description: colon tissue


title: SAGE_Brain_fetal_normal_B_S1

description:
CGAP_Numeric_library_ID: 430
Tagging_enzyme: Mme I
Library_producer: Brad St. Croix
Laboratory: Molecular Genetics Lab at Johns Hopkins Oncology Center

source_name: brain, normal, bulk, fetus, extracted short SAGE

value: Spontaneously aborted male/female Caucasian fetuses, ages 20-33 weeks

value: unknown

value: Short tags are extracted from Long SAGE data


title: SAGE_Brain_ependymoma_B_R628

description:
CGAP_Numeric_library_ID: 151
Tagging_enzyme: BsmF I
Library_producer: Brian E. Fee
Laboratory: Gregory Riggins, Duke University Medical Center
References: K. Boon et al., Proc Natl Acad Sci U S A 99, 11287-92 (2002) [PUBMED=12119410]

source_name: brain, non-normalized, bulk, ependymoma, short SAGE

value: ependymoma

value: Grade II


title: Normal, No cancer, Sample 8Q9TRNVU, Chip R38415

description: colon tissue

value: Normal

value: No


title: SAGE_Brain_ependymoma_B_R455

description:
CGAP_Numeric_library_ID: 149
Tagging_enzyme: BsmF I
Library_producer: Brian E. Fee
Laboratory: Gregory Riggins, Duke University Medical Center
References: K. Boon et al., Proc Natl Acad Sci U S A 99, 11287-92 (2002) [PUBMED=12119410]


title: SAGE_Brain_ependymoma_B_R582

description:
CGAP_Numeric_library_ID: 150
Tagging_enzyme: BsmF I
Library_producer: Brian E. Fee
Laboratory: Gregory Riggins, Duke University Medical Center
References: K. Boon et al., Proc Natl Acad Sci U S A 99, 11287-92 (2002) [PUBMED=12119410]


title: Duke C, Cancer, Sample BLUW6AJB, Chip R38411

description: colon tissue

value: Duke C

value: Yes


title: Duke B, Cancer, Sample ZYKTYATN, Chip R38413

description: colon tissue

value: ZYKTYATN

value: Duke B


title: SAGE_Brain_ependymoma_B_R512

description:
CGAP_Numeric_library_ID: 388
Tagging_enzyme: BsmF I
Library_producer: BRIAN E. FEE
Laboratory: RIGGINS LAB AT DUKE UNIVERSITY MEDICAL CENTER

source_name: brain, ependymoma, bulk, short SAGE, female

value: bulk

value: 7 yrs


title: Duke C, Cancer, Sample VYAEKAJF, Chip R38414

description: colon tissue

value: VYAEKAJF


title: Duke C, Cancer, Sample AJOJHAGP, Chip R38412

description: colon tissue

value: AJOJHAGP


title: SAGE_Brain_ependymoma_B_R353

description:
CGAP_Numeric_library_ID: 148
Tagging_enzyme: BsmF I
Library_producer: Brian E. Fee
Laboratory: Gregory Riggins, Duke University Medical Center
References: K. Boon et al., Proc Natl Acad Sci U S A 99, 11287-92 (2002) [PUBMED=12119410]

value: brain


title: SAGE_Brain_ependymoma_B_R1023

description:
CGAP_Numeric_library_ID: 147
Tagging_enzyme: BsmF I
Library_producer: Brian E. Fee
Laboratory: Gregory Riggins, Duke University Medical Center
References: K. Boon et al., Proc Natl Acad Sci U S A 99, 11287-92 (2002) [PUBMED=12119410]

value: female


title: Duke C, Cancer, Sample MILO4AF8, Chip R38409

description: colon tissue


title: SAGE_Brain_ependymoma_B_R510

description:
CGAP_Numeric_library_ID: 406
Tagging_enzyme: BsmF I
Library_producer: BRIAN E. FEE
Laboratory: RIGGINS LAB AT DUKE UNIVERSITY MEDICAL CENTER

value: 1.7 yrs

value: Suboccipital Craniectomy


title: Duke B, Cancer, Sample KSH3JALQ, Chip R38410

description: colon tissue


title: Duke C, Cancer, Sample POELPAF3, Chip R38408

description: colon tissue


title: Duke D, Cancer, Sample ZWM3AKE, Chip R38407

description: colon tissue

value: Duke D


title: SAGE_Brain_ependymoma_B_H580

description:
CGAP_Numeric_library_ID: 267
Tagging_enzyme: BsmF I
Library_producer: BRIAN E. FEE, PH.D
Laboratory: RIGGINS LAB AT DUKE UNIVERSITY MEDICAL CENTER

source_name: brain, bulk, ependymoma, adult, male, short SAGE

value: 29 yrs

value: male

value: ependymoma

value: primary brain tumor in right foramen of lushka


title: Duke C, Cancer, Sample O3PJWAU4, Chip R38406

description: colon tissue

value: Duke C


title: Duke B, Cancer, Sample C115, Chip R38405

description: colon tissue

value: Yes


title: SAGE_Brain_ependymoma_B_239

description:
CGAP_Numeric_library_ID: 140
Tagging_enzyme: BsmF I
Old_library_name: SAGE_ependymoma239
Library_producer: Brian E. Fee
Laboratory: Gregory Riggins, Duke University Medical Center

source_name: brain, ependymoma, short SAGE, non-normalized, bulk

value: primary ependymoma in 34 yo female


title: SAGE_Brain_ependymoblastoma_B_819

description:
CGAP_Numeric_library_ID: 138
Tagging_enzyme: BsmF I
Old_library_name: SAGE_ependymoblastoma_819
Library_producer: Brian E. Fee
Laboratory: Gregory Riggins, Duke University Medical Center

source_name: brain, ependymoblastoma, short SAGE, non-normalized, bulk

value: 9 months

value: Malignant embryonal tumor consistent with ependymoblastoma, in patient who subsequently had recurrent ependymal tumors


title: SAGE_Brain_ependymoma_B_1150

description:
CGAP_Numeric_library_ID: 137
Tagging_enzyme: BsmF I
Old_library_name: SAGE_glioma_1150
Library_producer: Brian E. Fee
Laboratory: Gregory Riggins, Duke University Medical Center

value: bulk

value: 4 years

value: recurrent glioma from patient with previous ependymoblastoma in same fronto-parietal region


title: SAGE_Brain_ependymoma_B_1394

description:
CGAP_Numeric_library_ID: 139
Tagging_enzyme: BsmF I
Old_library_name: SAGE_ependymoma_1394
Library_producer: Brian E. Fee
Laboratory: Gregory Riggins, Duke University Medical Center

value: brain

value: 6.3 years

value: recurrent Neuroectodermal tumor w/epend diff. tumor, from 6.3 year old female with history of ependymoma


title: SAGE_Brain_astrocytoma_grade_III_B_R140

description:
CGAP_Numeric_library_ID: 384
Tagging_enzyme: BsmF I
Library_producer: Jennifer B. Edwards, MS.
Laboratory: Riggins Lab, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

source_name: brain, astrocytoma grade iii, bulk, short sage, male, adult

value: 71 yrs

value: Anaplastic astrocytoma grade III


title: Duke B, Cancer, Sample LAQA6A8Q, Chip R38404

description: colon tissue

source_name: colon

value: Duke B


title: SAGE_Brain_astrocytoma_grade_III_B_R927

description:
CGAP_Numeric_library_ID: 351
Tagging_enzyme: BsmF I
Library_producer: Jennfier B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

source_name: brain, astrocytoma grade iii, bulk, short sage, adult, female

value: 32 yrs

value: female

value: anaplastic gradeIII, primary, brain


title: Duke C, Cancer, Sample 8Q9TRAEE, Chip R38403

description: colon tissue

value: Duke C


title: Duke C, Cancer, Sample 7NUSVAH3, Chip R38402

description: colon tissue

value: Yes


title: SAGE_Brain_astrocytoma_grade_III_B_H1020

description:
CGAP_Numeric_library_ID: 54
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_H1020
Library_producer: Deric Olschner
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

source_name: brain, anaplastic, bulk, non-normalized, short sage, astrocytoma grade iii

value: unknown

value: astrocytoma, right parietal occipital lobe, cerebral cortex


title: Duke B, Cancer, Sample 5CYDKA5B, Chip R38400

description: colon tissue


title: Duke B, Cancer, Sample ARA7PAQE, Chip R38399

description: colon tissue


title: Duke B, Cancer, Sample C118, Chip R38401

description: colon tissue


title: SAGE_Brain_astrocytoma_grade_III_B_H970

description:
CGAP_Numeric_library_ID: 283
Tagging_enzyme: BsmF I
Library_producer: JENNIFER B. EDWARDS, M.S
Laboratory: RIGGINS LAB AT DUKE
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

source_name: brain, astrocytoma grade iii, bulk, adult, male, short sage

value: 51 yr

value: male

value: anaplastic astrocytoma grade III,


title: Duke A, Cancer, Sample C113, Chip R38397

description: colon tissue

value: Duke A


title: Duke B, Cancer, Sample N8KVIA3S, Chip R38398

description: colon tissue


title: Normal, No cancer, Sample Normal Colon Control, Chip R38396

description: colon tissue

value: Normal Colon Control

value: Normal

value: No


title: SAGE_Brain_astrocytoma_grade_III_B_828

description:
CGAP_Numeric_library_ID: 349
Tagging_enzyme: BsmF I
Library_producer: Jennfier B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

value: brain

value: bulk

value: 35 yrs

value: anaplastic astrocytoma


title: SAGE_Brain_astrocytoma_grade_III_B_584

description:
CGAP_Numeric_library_ID: 344
Tagging_enzyme: BsmF I
Library_producer: Jennfier B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

source_name: brain, astrocytoma grade iii, bulk, short sage, female, adult

value: 38 yrs

value: female


title: Duke B, Cancer, Sample IHDNLAKU, Chip R38393

description: colon tissue

value: IHDNLAKU

value: Duke B


title: SAGE_Brain_astrocytoma_grade_III_B_H272

description:
CGAP_Numeric_library_ID: 563
Tagging_enzyme: BsmF I
Library_producer: Jennifer B. Edwards, M.S.
Laboratory: Riggins Lab at Duke.
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

source_name: astrocytoma grade iii, brain, bulk, adult, female, short sage

value: 43 yrs old

value: Anaplastic GradeIII Astrocytoma


title: Duke B, Cancer, Sample QLKH5A5O, Chip R38395

description: colon tissue

value: Yes


title: Duke B, Cancer, Sample S6TRKAX6, Chip R38394

description: colon tissue


title: SAGE_Brain_astrocytoma_grade_III_B_343

description:
CGAP_Numeric_library_ID: 343
Tagging_enzyme: BsmF I
Library_producer: Jennifer B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

source_name: brain, bulk, astrocytoma grade iii, short sage, adult, female

value: 30 yrs


title: Duke B, Cancer, Sample EIBU9AM5, Chip R38391

description: colon tissue


title: SAGE_Brain_astrocytoma_grade_II_B_H530

description:
CGAP_Numeric_library_ID: 348
Tagging_enzyme: BsmF I
Library_producer: Jennfier B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

source_name: brain, astrocytoma grade ii, bulk, short sage, adult, female

value: 66 yrs

value: astrocytoma grade II


title: SAGE_Brain_astrocytoma_grade_II_B_H563

description:
CGAP_Numeric_library_ID: 146
Tagging_enzyme: BsmF I
Library_producer: Jennifer B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

source_name: brain, non-normalized, bulk, astrocytoma grade ii, short sage


title: SAGE_Brain_astrocytoma_grade_III_B_407

description:
CGAP_Numeric_library_ID: 361
Tagging_enzyme: BsmF I
Library_producer: Jennfier B. Edwards
Laboratory: RIGGINS LAB Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

source_name: bulk, brain, astrocytoma grade iii, short sage, male, pediatric

value: 13 yrs

value: male


title: Duke A, Cancer, Sample C110, Chip R38392

description: colon tissue

value: Duke A


title: Duke C, Cancer, Sample ELMC6A62, Chip R38388

description: colon tissue

value: Duke C


title: SAGE_Brain_astrocytoma_grade_III_B_H1055

description:
CGAP_Numeric_library_ID: 350
Tagging_enzyme: BsmF I
Library_producer: Jennfier B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

source_name: brain, astrocytoma grade iii, bulk, short sage, adult, male

value: brain

value: bulk

value: anaplastic gradeIII, primary, brain


title: SAGE_Brain_astrocytoma_grade_III_B_439

description:
CGAP_Numeric_library_ID: 385
Tagging_enzyme: BsmF I
Library_producer: Jennifer B. Edwards, M.S
Laboratory: Riggins Lab at Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

value: 65 yrs

value: Anaplastic Astrocytoma Grade III


title: SAGE_Brain_astrocytoma_grade_II_B_H359

description:
CGAP_Numeric_library_ID: 144
Tagging_enzyme: BsmF I
Library_producer: Jennifer B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]


title: SAGE_Brain_astrocytoma_grade_II_B_H388

description:
CGAP_Numeric_library_ID: 145
Tagging_enzyme: BsmF I
Library_producer: Jennifer B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]


title: Normal, No cancer, Sample 7NUSVNTN, Chip R38389

description: colon tissue

value: Normal

value: No


title: SAGE_Brain_astrocytoma_grade_II_B_H516

description:
CGAP_Numeric_library_ID: 347
Tagging_enzyme: BsmF I
Library_producer: Jennfier B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

source_name: brain, astrocytoma grade ii, bulk, short sage, male, adult

value: 53 yrs

value: female


title: SAGE_Brain_astrocytoma_grade_II_B_H501

description:
CGAP_Numeric_library_ID: 346
Tagging_enzyme: BsmF I
Library_producer: Jennfier B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

source_name: brain, astrocytoma, grade ii, bulk, short sage, female

value: 10 yrs


title: SAGE_Brain_astrocytoma_grade_II_B_H518

description:
CGAP_Numeric_library_ID: 564
Tagging_enzyme: BsmF I
Library_producer: Jennifer B. Edwards, M.S.
Laboratory: Riggins Lab at Duke
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

source_name: brain, bulk, astrocytoma grade ii, male, pediatric, short sage

value: 5 yrs

value: Anaplastic GradeII Astrocytoma


title: Duke C, Cancer, Sample BDGFCAKA, Chip R38387

description: colon tissue

value: BDGFCAKA

value: Yes


title: SAGE_Brain_astrocytoma_grade_II_B_H127

description:
CGAP_Numeric_library_ID: 345
Tagging_enzyme: BsmF I
Library_producer: Jennfier B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]

value: 35 yrs

value: male

value: astrocytoma grade II


title: Normal, No cancer, Sample AR9A7NL4, Chip R38390

description: colon tissue


title: Duke C, Cancer, Sample DFVJAACX, Chip R38385

description: colon tissue

value: DFVJAACX

value: Duke C


title: Duke C, Cancer, Sample 9VMYRAAB, Chip R38386

description: colon tissue


title: SAGE_Brain_astrocytoma_grade_I_B_H1043

description:
CGAP_Numeric_library_ID: 50
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_H1043
Library_producer: Deric Olschner
Laboratory: Gregory Riggins, Duke University Medical Center

source_name: brain, pilocytic, bulk, non-normalized, short sage, astrocytoma grade i

value: brain

value: bulk

value: pilocytic astrocyoma, cerebellum

value: grade one(1) pilocytic astrocytoma


title: SAGE_Brain_astrocyte_normal_CL_NHA5

description:
CGAP_Numeric_library_ID: 9
Tagging_enzyme: BsmF I
Old_library_name: SAGE_NHA(5th)
Library_producer: Anita Lal
Laboratory: Gregory Riggins, Duke University Medical Center
References: A. Lal et al., Cancer Res 59, 5403-7 (1999) [PUBMED=10554005]

source_name: cortex, normal, astrocyte, non-normalized, short SAGE, cell line, fetus

value: cell line

value: fetal

value: normal fetal astrocyte, GFAP positive, cerebral cortex

value: Normal human astrocyte cells selected from the whole brain of a 22.5 wks old donor grown in the supplied media and harvested at passage 5. Cat# CC-2565, Lot 17657.


title: Duke C, Cancer, Sample HQIU5AYO, Chip R38382

description: colon tissue


title: Duke C, Cancer, Sample NN29GABN, Chip R38384

description: colon tissue


title: Duke C, Cancer, Sample HIKQCAAS, Chip R38383

description: colon tissue

value: HIKQCAAS


title: SAGE_Bone_marrow_normal_B_D01

description:
CGAP_Numeric_library_ID: 404
Tagging_enzyme: BsmF I
Library_producer: Deric Olschner
Laboratory: Gregory Riggins, Duke University Medical Center

source_name: bone marrow, normal, bulk, short SAGE

value: bone marrow

value: unknown


title: Duke C, Cancer, Sample B8TMKAN5, Chip R38381

description: colon tissue

source_name: colon

value: Yes


title: Duke B, Cancer, Sample B7AYIA8V, Chip R38379

description: colon tissue

value: Duke B


title: Duke B, Cancer, Sample KKFKYAIU, Chip R38378

description: colon tissue

value: KKFKYAIU


title: Duke B, Cancer, Sample FNJUHAU3, Chip R38380

description: colon tissue


title: Duke B, Cancer, Sample 9S9RNA14, Chip R38375

description: colon tissue


title: Duke B, Cancer, Sample ACGL2AN4, Chip R38376

description: colon tissue


title: SAGE_Bone_marrow_AML_FS_CD34+CD38+

description:
CGAP_Numeric_library_ID: 1503
Tagging_enzyme: Mme I
Library_producer: Jennifer Edwards
Laboratory: Gregory Riggins, Johns Hopkins Department of Neurosurgery

source_name: bone marrow, acute myelogenous leukemia, flow-sorted, extracted short sage

value: flow-sorted

value: Acute myelogenous leukemia


title: SAGE_Bone_marrow_normal_AP_CD34+/CD38+/lin+

description:
CGAP_Numeric_library_ID: 443
Tagging_enzyme: BsmF I
Library_producer: Robert Georgantas
Laboratory: Curt I Civin Laboratory at Johns Hopkins Medical Institute.
References: R.W. Georgantas et al., Cancer Research 64, 4434-41 (2004) [PUBMED=15231652]

source_name: bone marrow, normal, antibody purified, short sage

value: antibody purified

value: normal bone marrow


title: SAGE_Bone_Marrow_AML_FS_CD34+CD38+

description:
CGAP_Numeric_library_ID: 1904
Tagging_enzyme: Mme I
Library_producer: Jennifer B. Edwards
Laboratory: Dr. Gregory Riggins

source_name: bone marrow, aml, non-normalized, extracted long sage, flow sorted

value: Stem Proginitor Cells, CD34+, CD38+


title: Duke B, Cancer, Sample TUUKWA2Q, Chip R38377

description: colon tissue


title: SAGE_Bone_marrow_normal_AP_CD34+/CD38-/lin-

description:
CGAP_Numeric_library_ID: 409
Tagging_enzyme: BsmF I
Library_producer: Robert Georgantas
Laboratory: Curt I Civin Laboratory at Johns Hopkins Medical Institute
References: R.W. Georgantas et al., Cancer Research 64, 4434-41 (2004) [PUBMED=15231652]


title: mLSAGE_Vascular_endothelium_normal_spleen_associated_AP_NSEC1

description:
Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 2189
Library_producer: Brad St. Croix
Laboratory: Brad St. Croix, National Cancer Institute, Tumor Angiogenesis Section
References: Seaman S et al.  Cancer Cell. 2007 Jun;11(6):539-54 [PUBMED=17560335]

organism: Mus musculus

source_name: vascular, normal, endothelium, antibody purified, long sage, adult

value: vascular


title: mLSAGE_Vascular_endothelium_normal_muscle_associated_AP_NMEC1

description:
Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 2194
Library_producer: Brad St. Croix
Laboratory: Brad St. Croix, National Cancer Institute, Tumor Angiogenesis Section
References: Seaman S et al.  Cancer Cell. 2007 Jun;11(6):539-54 [PUBMED=17560335]


title: mLSAGE_Vascular_endothelium_SW620_tumor_associated_AP_SW620TEC

description:
Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 2229
Library_producer: Brad St. Croix
Laboratory: Brad St. Croix, National Cancer Institute, Tumor Angiogenesis Section
References: Seaman S et al.  Cancer Cell. 2007 Jun;11(6):539-54 [PUBMED=17560335]

source_name: vascular, tumor associated, endothelium, antibody purified, long sage, adult


title: mLSAGE_Vascular_endothelium_normal_lung_associated_AP_NLgEC1

description:
Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 2192
Library_producer: Brad St. Croix
Laboratory: Brad St. Croix, National Cancer Institute, Tumor Angiogenesis Section
References: Seaman S et al.  Cancer Cell. 2007 Jun;11(6):539-54 [PUBMED=17560335]


title: Duke C, Cancer, Sample FQFE7A5W, Chip R38372

description: colon tissue

value: Duke C


title: mLSAGE_Vascular_endothelium_normal_liver_associated_AP_NLiEC1

description:
Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 2196
Library_producer: Brad St. Croix, National Cancer Institute, Tumor Angiogenesis Section
Laboratory: Seaman S et al.  Cancer Cell. 2007 Jun;11(6):539-54 [PUBMED=17560335]


title: Normal, Cancer, Sample ELMC6NHB, Chip R38373

description: colon tissue

value: Normal


title: Duke A, Cancer, Sample C109, Chip R38374

description: colon tissue

value: Duke A


title: FFPE-Duke C, Cancer, Sample FQFE7A5W, Chip R38371

description: colon tissue

value: FFPE-Duke C


title: Duke D, Cancer, Sample IJNQZAQZ, Chip R38370

description: colon tissue

value: IJNQZAQZ

value: Duke D


title: FFPE-Duke D, Cancer, Sample IJNQZAQZ, Chip R38369

description: colon tissue

value: FFPE-Duke D


title: mLSAGE_Vascular_endothelium_normal_brain_associated_AP_NBEC1

description:
Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 2185
Library_producer: Brad St. Croix
Laboratory: Brad St. Croix, National Cancer Institute, Tumor Angiogenesis Section
References: Seaman S et al.  Cancer Cell. 2007 Jun;11(6):539-54 [PUBMED=17560335]

value: unknown


title: FFPE-Duke B, Cancer, Sample KDSZBANI, Chip R38365

description: colon tissue

value: KDSZBANI

value: FFPE-Duke B

value: Yes


title: Duke B, Cancer, Sample KDSZBANI, Chip R38366

description: colon tissue

value: Duke B


title: FFPE-Duke C, Cancer, Sample ZIPBBA2E, Chip R38367

description: colon tissue


title: Duke C, Cancer, Sample ZIPBBA2E, Chip R38368

description: colon tissue


title: mLSAGE_Vascular_endothelium_normal_kidney_associated_AP_NKEC1

description:
Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 2187
Library_producer: Brad St. Croix
Laboratory: Brad St. Croix, National Cancer Institute, Tumor Angiogenesis Section
References: Seaman S et al.  Cancer Cell. 2007 Jun;11(6):539-54 [PUBMED=17560335]


title: mLSAGE_Vascular_endothelium_normal_heart_associated_AP_NHEC1

description:
Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 2183
Library_producer: Brad St. Croix
Laboratory: Brad St. Croix, National Cancer Institute, Tumor Angiogenesis Section
References: Seaman S et al.  Cancer Cell. 2007 Jun;11(6):539-54 [PUBMED=17560335]


title: mLSAGE_Vascular_endothelium_LLC_tumor_associated_AP_LLCTEC

description:
Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 2227
Library_producer: Brad St. Croix
Laboratory: Brad St. Croix, National Cancer Institute, Tumor Angiogenesis Section
References: Seaman S et al.  Cancer Cell. 2007 Jun;11(6):539-54 [PUBMED=17560335]


title: mLSAGE_Vascular_endothelium_EMT6_tumor_associated_AP_EMT6TEC

description:
Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 2223
Library_producer: Brad St. Croix
Laboratory: Brad St. Croix, National Cancer Institute, Tumor Angiogenesis Section
References: Seaman S et al.  Cancer Cell. 2007 Jun;11(6):539-54 [PUBMED=17560335]


title: mLSAGE_Urogenital_sinus_normal_TS18_MMD_SM065

description:
Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 1185
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC

source_name: embryonic tissue, male urogenital sinus epithelium, microscope dissected, normal, male, long sage, ts24, late gestation embryo

value: embryonic tissue

value: microscope dissected

value: male

value: urogenital sinus epithelium


title: mLSAGE_Vascular_endothelium_KM12SM_tumor_associated_AP_KM12TEC

description:
Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 2225
Library_producer: Brad St. Croix, National Cancer Institute, Tumor Angiogenesis Section
Laboratory: Seaman S et al.  Cancer Cell. 2007 Jun;11(6):539-54 [PUBMED=17560335]

value: vascular

value: antibody purified


title: mLSAGE_Pancreas_normal_TS21_MMD_SM225

description:
Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 2065
Library_producer: Gene Expresion Lab, GSC
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC

source_name: pancreas, normal, mocroscope dissected, e13.5, ts21, long sage

value: pancreas

value: other

value: normal

value: NGN3 GFP+