title: CVB3_S-0.5h

description:
Human cervical carcinoma cells (HeLa cells; American-Type Culture
Collection) were cultured in a 10 cm tissue culture plate. Cells were serum starved overnight and infected with phosphate buffered saline for 45 min under serum-free conditions. Following infection, virus was removed and fresh media containing 10% fetal bovine serum was added for the remainder of the infectious process. At 30 minutes following infection, cells were scraped into 1ml ice cold PBS and spun at 1000 rpm for 10 minutes. Supernatant was removed and cells lysates were flash frozen in liquid nitrogen. Subsequently, RNA was isolated, processed and hybridized to Affymetrix U95A arrays.


title: CVB3_V-1h

status: Public on Oct 09 2003

type: RNA

city: Vancouver

first: Bruce

middle: Maxwell

last: McManus

state: BC

address: 1081 Burrard Street

department: UBC James Hogg Research Centre

country: Canada

institute: PROOF Centre of Excellence

description:
Human cervical carcinoma cells (HeLa cells; American-Type Culture
Collection) were cultured in a 10 cm tissue culture plate. Cells were serum starved overnight and infected with coxsackievirus B3 (multiplicity of infection=10) for 45 min under serum-free conditions. Following infection, virus was removed and fresh media containing 10% fetal bovine serum was added for the remainder of the infectious process. At 1 hour following infection, cells were scraped into 1ml ice cold PBS and spun at 1000 rpm for 10 minutes. Supernatant was removed and cells lysates were flash frozen in liquid nitrogen. Subsequently, RNA was isolated, processed and hybridized to Affymetrix U95A arrays.

molecule: total RNA

organism: Homo sapiens

source_name: HeLa cell lysate infected with CVB3


title: CVB3_V-3h-1

status: Public on Oct 04 2003

description: Human cervical carcinoma cells (HeLa cells; American-Type Culture Collection) were cultured in a 10 cm tissue culture plate. Cells were exposed to DMSO overnight and infected with coxsackievirus B3 (multiplicity of infection=10) for 45 min under serum-free conditions. Following infection, virus was removed and fresh media containing 10% fetal bovine serum was added for the remainder of the infectious process. At 3 hours following infection, cells were scraped into 1ml ice cold PBS and spun at 1000 rpm for 10 minutes. Supernatant was removed and cells lysates were flash frozen in liquid nitrogen. Subsequently, RNA was isolated, processed, and hybridized to Affymetrix U95A arrays.


title: CVB3_V-3h-4


title: CVB3_V-0.5h

description:
Human cervical carcinoma cells (HeLa cells; American-Type Culture
Collection) were cultured in a 10 cm tissue culture plate. Cells were serum starved overnight and infected with coxsackievirus B3 (multiplicity of infection=10) for 45 min under serum-free conditions. Following infection, virus was removed and fresh media containing 10% fetal bovine serum was added for the remainder of the infectious process. At 30 minutes following infection, cells were scraped into 1ml ice cold PBS and spun at 1000 rpm for 10 minutes. Supernatant was removed and cells lysates were flash frozen in liquid nitrogen. Subsequently, RNA was isolated, processed and hybridized to Affymetrix U95A arrays.


title: CVB3_VU-9h-2

description: Human cervical carcinoma cells (HeLa cells; American-Type Culture Collection) were cultured in a 10 cm tissue culture plate. Cells were exposed to DMSO + U0126(10μM) overnight and infected with coxsackievirus B3 (multiplicity of infection=10) for 45 min under serum-free conditions. Following infection, virus was removed and fresh media containing 10% fetal bovine serum was added for the remainder of the infectious process. At 9 hours following infection, cells were scraped into 1ml ice cold PBS and spun at 1000 rpm for 10 minutes. Supernatant was removed and cells lysates were flash frozen in liquid nitrogen. Subsequently, RNA was isolated, processed, and hybridized to Affymetrix U95A arrays.


title: Control_U95A

status: Public on Oct 08 2003

city: Toronto

first: Harjit

middle: Kaur

last: Dadi

state: Ontario

address: 555 University Avenue,

department: Infection, Immunity, Injury & Repair Research

institute: Hospital for Sick Children

description: Gene expression data from thymocytes of a 6 month old infant.

source_name: Total RNA from Normal thymocytes


title: CVB3_S-0h

description:
Human cervical carcinoma cells (HeLa cells; American-Type Culture
Collection) were cultured in a 10 cm tissue culture plate. Cells were serum starved overnight and infected with phosphate buffered saline for 45 min under serum-free conditions. Following infection, virus was removed and fresh media containing 10% fetal bovine serum was added for the remainder of the infectious process. At 0 hours following infection, cells were scraped into 1ml ice cold PBS and spun at 1000 rpm for 10 minutes. Supernatant was removed and cells lysates were flash frozen in liquid nitrogen. Subsequently, RNA was isolated, processed and hybridized to Affymetrix U95A arrays.

source_name: HeLa cell lysate


title: CVB3_V-0.5h-3

description: Human cervical carcinoma cells (HeLa cells; American-Type Culture Collection) were cultured in a 10 cm tissue culture plate. Cells were exposed to DMSO overnight and infected with coxsackievirus B3 (multiplicity of infection=10) for 45 min under serum-free conditions. Following infection, virus was removed and fresh media containing 10% fetal bovine serum was added for the remainder of the infectious process. At 30 minutes following infection, cells were scraped into 1ml ice cold PBS and spun at 1000 rpm for 10 minutes. Supernatant was removed and cells lysates were flash frozen in liquid nitrogen. Subsequently, RNA was isolated, processed, and hybridized to Affymetrix U95A arrays.


title: CVB3_V-3h-3


title: CVB3_V-9h-3

description: Human cervical carcinoma cells (HeLa cells; American-Type Culture Collection) were cultured in a 10 cm tissue culture plate. Cells were exposed to DMSO overnight and infected with coxsackievirus B3 (multiplicity of infection=10) for 45 min under serum-free conditions. Following infection, virus was removed and fresh media containing 10% fetal bovine serum was added for the remainder of the infectious process. At 9 hours following infection, cells were scraped into 1ml ice cold PBS and spun at 1000 rpm for 10 minutes. Supernatant was removed and cells lysates were flash frozen in liquid nitrogen. Subsequently, RNA was isolated, processed, and hybridized to Affymetrix U95A arrays.


title: Patient 1_U95A

description: Gene expression data from thymocytes of a SCID patient.

source_name: Total RNA from a SCID patient.


title: CVB3_V-0.5h-1


title: CVB3_S-9h-4

description: Human cervical carcinoma cells (HeLa cells; American-Type Culture Collection) were cultured in a 10 cm tissue culture plate. Cells were exposed to DMSO overnight and infected with phosphate buffered saline for 45 min under serum-free conditions. Following infection, virus was removed and fresh media containing 10% fetal bovine serum was added for the remainder of the infectious process. At 9 hours following infection, cells were scraped into 1ml ice cold PBS and spun at 1000 rpm for 10 minutes. Supernatant was removed and cells lysates were flash frozen in liquid nitrogen. Subsequently, RNA was isolated, processed, and hybridized to Affymetrix U95A arrays.


title: CVB3_VU-9h-3


title: CVB3_S-9h-3


title: CVB3_V-9h-4


title: CVB3_S-0.5h-4

description: Human cervical carcinoma cells (HeLa cells; American-Type Culture Collection) were cultured in a 10 cm tissue culture plate. Cells were exposed to DMSO overnight and infected with phosphate buffered saline for 45 min under serum-free conditions. Following infection, virus was removed and fresh media containing 10% fetal bovine serum was added for the remainder of the infectious process. At 30 minutes following infection, cells were scraped into 1ml ice cold PBS and spun at 1000 rpm for 10 minutes. Supernatant was removed and cells lysates were flash frozen in liquid nitrogen. Subsequently, RNA was isolated, processed, and hybridized to Affymetrix U95A arrays.


title: CVB3_S-0.5h-2


title: CVB3_S-3h-2

description: Human cervical carcinoma cells (HeLa cells; American-Type Culture Collection) were cultured in a 10 cm tissue culture plate. Cells were exposed to DMSO overnight and infected with phosphate buffered saline for 45 min under serum-free conditions. Following infection, virus was removed and fresh media containing 10% fetal bovine serum was added for the remainder of the infectious process. At 3 hours following infection, cells were scraped into 1ml ice cold PBS and spun at 1000 rpm for 10 minutes. Supernatant was removed and cells lysates were flash frozen in liquid nitrogen. Subsequently, RNA was isolated, processed, and hybridized to Affymetrix U95A arrays.


title: CVB3_S-3h-4


title: CVB3_V-0.5h-2


title: CVB3_V-9h-2

status: Public on Oct 01 2003

description: Human cervical carcinoma cells (HeLa cells; American-Type Culture Collection) were cultured in a 10 cm tissue culture plate.  Cells were exposed to DMSO overnight and infected with coxsackievirus B3 (multiplicity of infection=10) for 45 min under serum-free conditions.  Following infection, virus was removed and fresh media containing 10% fetal bovine serum was added for the remainder of the infectious process.  At 9 hours following infection, cells were scraped into 1ml ice cold PBS and spun at 1000 rpm for 10 minutes.  Supernatant was removed and cells lysates were flash frozen in liquid nitrogen.  Subsequently, RNA was isolated, processed and hybridized to Affymetrix U95A arrays.


title: CVB3-S-0h-2

description: Human cervical carcinoma cells (HeLa cells; American-Type Culture Collection) were cultured in a 10 cm tissue culture plate. Cells were exposed to DMSO overnight and infected with phosphate buffered saline for 45 min under serum-free conditions. Following infection, virus was removed and fresh media containing 10% fetal bovine serum was added for the remainder of the infectious process. At 0 hours following infection, cells were scraped into 1ml ice cold PBS and spun at 1000 rpm for 10 minutes. Supernatant was removed and cells lysates were flash frozen in liquid nitrogen. Subsequently, RNA was isolated, processed, and hybridized to Affymetrix U95A arrays.


title: CVB3_S-0h-4


title: CVB3_S-9h-2


title: CVB3_S-0h-3


title: r3

status: Public on Aug 28 2003

city: Boston

first: Richard

middle: E.

last: Pratt

state: MA

address: 75 Francis Street

department: Medicine

country: USA

institute: Brigham and Women's Hospital

description:
aortic biopsy stiff
Keywords = pulse wave velocity, arterial stiffness

source_name: aortic biopsy


title: CVB3_S-3h-3


title: B44

status: Public on Sep 17 2003

city: Columbus

first: Herbert

last: Auer

state: OH

address: 420 West 12th Ave

institute: Human Cancer Genetics

description:
RNA sample (degradation factor 44) degraded after purification, RNA was isolated directly after PBMC isolation. In parallel, whole cell extracts from the same cells were prepared as a source for endogenous RNases by freezing cells which had been diluted 1:1 in distilled water with 5 % (v/v) glycerol. After thawing, cell debris was spun down in a tabletop centrifuge and supernatants were used as cell extracts. 30 ug of purified RNA were incubated with 100 ng of these cell extracts in a volume of 100 ul for 10 minutes at room temperature in the presence of 50 mM Tris.HCl pH 8.3, 75 mM KCl, 3 mM MgCl2 and 10 mM DTT. After this incubation, RNA was again purified by Trizol.  Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.
Keywords = Homo sapiens, RNA degradation, microarray

source_name: Peripheral blood mononuclear cells isolated from the blood of four healthy donor using Ficoll.


title: A40

description:
RNA sample (degradation factor 40) degraded after purification, RNA was isolated directly after PBMC isolation. In parallel, whole cell extracts from the same cells were prepared as a source for endogenous RNases by freezing cells which had been diluted 1:1 in distilled water with 5 % (v/v) glycerol. After thawing, cell debris was spun down in a tabletop centrifuge and supernatants were used as cell extracts. 30 ug of purified RNA were incubated with 100 ng of these cell extracts in a volume of 100 ul for 10 minutes at room temperature in the presence of 50 mM Tris.HCl pH 8.3, 75 mM KCl, 3 mM MgCl2 and 10 mM DTT. After this incubation, RNA was again purified by Trizol.  Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.
Keywords = Homo sapiens, RNA degradation, microarray


title: B3

description:
Intact RNA sample (degradation factor 3) processed in parallel without addition of cell extract after purification by Trizol.  Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.  One of two nondegraded RNAs processed and analyzed in paralell with the degraded samples.
Keywords = Homo sapiens, RNA degradation, microarray

source_name: Peripheral blood mononuclear cells isolated from the blood of one healthy donor using Ficoll.


title: B16

description:
RNA sample (degradation factor 16) degraded after purification, RNA was isolated directly after PBMC isolation. In parallel, whole cell extracts from the same cells were prepared as a source for endogenous RNases by freezing cells which had been diluted 1:1 in distilled water with 5 % (v/v) glycerol. After thawing, cell debris was spun down in a tabletop centrifuge and supernatants were used as cell extracts. 30 ug of purified RNA were incubated with 25 ng of these cell extracts in a volume of 100 ul for 10 minutes at room temperature in the presence of 50 mM Tris.HCl pH 8.3, 75 mM KCl, 3 mM MgCl2 and 10 mM DTT. After this incubation, RNA was again purified by Trizol.  Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.
Keywords = Homo sapiens, RNA degradation, microarray


title: B19

description:
RNA sample (degradation factor 19) degraded after purification, RNA was isolated directly after PBMC isolation. In parallel, whole cell extracts from the same cells were prepared as a source for endogenous RNases by freezing cells which had been diluted 1:1 in distilled water with 5 % (v/v) glycerol. After thawing, cell debris was spun down in a tabletop centrifuge and supernatants were used as cell extracts. 30 ug of purified RNA were incubated with 50 ng of these cell extracts in a volume of 100 ul for 10 minutes at room temperature in the presence of 50 mM Tris.HCl pH 8.3, 75 mM KCl, 3 mM MgCl2 and 10 mM DTT. After this incubation, RNA was again purified by Trizol.  Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.
Keywords = Homo sapiens, RNA degradation, microarray


title: A21

description:
RNA sample (degradation factor 21) degraded after purification, RNA was isolated directly after PBMC isolation. In parallel, whole cell extracts from the same cells were prepared as a source for endogenous RNases by freezing cells which had been diluted 1:1 in distilled water with 5 % (v/v) glycerol. After thawing, cell debris was spun down in a tabletop centrifuge and supernatants were used as cell extracts. 30 ug of purified RNA were incubated with 50 ng of these cell extracts in a volume of 100 ul for 10 minutes at room temperature in the presence of 50 mM Tris.HCl pH 8.3, 75 mM KCl, 3 mM MgCl2 and 10 mM DTT. After this incubation, RNA was again purified by Trizol. Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.
Keywords = Homo sapiens, RNA degradation, microarray


title: CVB3_S-0.5h-3


title: A13

description:
RNA sample (degradation factor 13) degraded after purification, RNA was isolated directly after PBMC isolation. In parallel, whole cell extracts from the same cells were prepared as a source for endogenous RNases by freezing cells which had been diluted 1:1 in distilled water with 5 % (v/v) glycerol. After thawing, cell debris was spun down in a tabletop centrifuge and supernatants were used as cell extracts. 30 ug of purified RNA were incubated with 25 ng of these cell extracts in a volume of 100 ul for 10 minutes at room temperature in the presence of 50 mM Tris.HCl pH 8.3, 75 mM KCl, 3 mM MgCl2 and 10 mM DTT. After this incubation, RNA was again purified by Trizol.  Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.
Keywords = Homo sapiens, RNA degradation, microarray


title: s42

description:
aortic biopsy distensible
Keywords = pulse wave velocity, arterial stiffness


title: s1


title: r7


title: s6


title: s8


title: A6

description:
Intact RNA sample (degradation factor 6) processed without addition of cell extract after purification by Trizol.  Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.  One of two nondegraded RNAs processed and analyzed in paralell with the degraded samples.
Keywords = Homo sapiens, RNA degradation, microarray


title: m3

description:
aortic biopsy medium
Keywords = pulse wave velocity, arterial stiffness


title: low dose 24h, replicate 1

status: Public on Aug 09 2003

city: Helsinki

first: Massimiliano

last: Gentile

state: Finland

address: Haartmaninkatu 8

department: Biomedicum Bioinformatics Unit

country: Finland

institute: Biomedicum Helsinki

description: ATCC number CRL-1502

source_name: WS1 human skin fibroblasts


title: low dose 6h, replicate 1

description: ATCC number CRL-1502


title: low dose 12h, replicate 1

description: ATCC number CRL-1502


title: low dose 12h, replicate 2

description: ATCC number CRL-1502


title: high dose 24h, replicate 2

description: ATCC number CRL-1502

source_name: Ws1 human skin fibroblasts


title: m2


title: low dose 18h, replicate 2

description: ATCC number CRL-1502


title: high dose 18h, replicate 1

description: ATCC number CRL-1502


title: R3


title: high dose 18h, replicate 2

description: ATCC number CRL-1502


title: high dose 24h, replicate 1

description: ATCC number CRL-1502


title: low dose 6h, replicate 2

description: ATCC number CRL-1502


title: r8


title: high dose 6h, replicate 2

description: ATCC number CRL-1502

source_name: WS! human skin fibroblasts


title: high dose 12h, replicate 1

description: ATCC number CRL-1502


title: low dose 24h, replicate 2

description: ATCC number CRL-1502


title: high dose 12h, replicate 2

description: ATCC number CRL-1502


title: high dose 6h, replicate 1

description: ATCC number CRL-1502


title: control 24h, replicate 2

description: ATCC number CRL-1502


title: control 6h, replicate 2

description:
Mortal human skin fibroblast cell line

ATCC number CRL-1502


title: control 24h, replicate 1

description: ATCC number CRL-1502


title: control 6h, replicate 1

description:
Mortal human skin fibroblasts

ATCC number CRL-1502


title: pCep4 - Noco9hrs - 1

status: Public on Aug 04 2003

city: Phoenix

first: Winnie

last: Liang

state: AZ

address: 445 N. Fifth Street

institute: Translational Genomics

description: HeLa CD4+ cells were transfected with a parental vector pCep4 plasmid and selected with hygromycin. Cells were treated with nocodazole and collected @9 hours.

source_name: HeLa CD4+ cells


title: pCep4 - Noco9hrs - 2


title: pCep4 - Hu6hrs - 1

description: HeLa CD4+ cells were transfected with a parental vector pCep4 plasmid and selected with hygromycin. Cells were treated with hydroxyurea and collected @6 hours.


title: pCep4 - Noco6hrs - 2

description: HeLa CD4+ cells were transfected with a parental vector pCep4 plasmid and selected with hygromycin. Cells were treated with nocodazole and collected @6 hours.


title: pCep4 - Noco0hr - 2

description: HeLa CD4+ cells were transfected with a parental vector pCep4 plasmid and selected with hygromycin. Cells were treated with nocodazole and collected @0 hours.


title: pCep4 - Noco6hrs - 1


title: pCep4 - Hu9hrs - 2

description: HeLa CD4+ cells were transfected with a parental vector pCep4 plasmid and selected with hygromycin. Cells were treated with hydroxyurea and collected @9 hours.


title: pCep4 - unsynchronized - 2

description: HeLa CD4+ cells were transfected with a parental vector pCep4 plasmid and selected with hygromycin.


title: pCep4 - Hu0hr - 1

description: HeLa CD4+ cells were transfected with a parental vector pCep4 plasmid and selected with hygromycin.  Cells were treated with hydroxyurea and collected @0 hours.


title: pCep4 - Hu3hrs - 1

description: HeLa CD4+ cells were transfected with a parental vector pCep4 plasmid and selected with hygromycin. Cells were treated with hydroxyurea and collected @3 hours.


title: pCep4 - Hu3hrs - 2


title: pCep4 - Hu6hrs - 2


title: pCep4 - Hu0hr - 2

description: HeLa CD4+ cells were transfected with a parental vector pCep4 plasmid and selected with hygromycin. Cells were treated with hydroxyurea and collected @0 hours.


title: pCep4 - Hu9hrs - 1


title: pCep4 - Noco3hrs - 2

description: HeLa CD4+ cells were transfected with a parental vector pCep4 plasmid and selected with hygromycin. Cells were treated with nocodazole and collected @3 hours.


title: pCep4 - Noco0hr - 1


title: pCep4 - unsynchronized - 1


title: pCep4 - Noco3hrs - 1


title: eTat - Noco9hr - 2

description: HeLa CD4+ cells were transfected with an epitope-tagged eTat plasmid and selected with hygromycin. Cells were treated with nocodazole and collected @9 hours.


title: eTat - Noco9hr - 1


title: eTat - Noco3hr - 2

description: HeLa CD4+ cells were transfected with an epitope-tagged eTat plasmid and selected with hygromycin. Cells were treated with nocodazole and collected @3 hours.


title: eTat - Noco6hr - 2

description: HeLa CD4+ cells were transfected with an epitope-tagged eTat plasmid and selected with hygromycin. Cells were treated with nocodazole and collected @6 hours.


title: eTat - Noco6hr - 1


title: eTat - Noco0hr - 1

description: HeLa CD4+ cells were transfected with an epitope-tagged eTat plasmid and selected with hygromycin. Cells were treated with nocodazole and collected @0 hours.


title: eTat - Hu0hr - 2

description: HeLa CD4+ cells were transfected with an epitope-tagged eTat plasmid and selected with hygromycin. Cells were treated with hydroxyurea and collected @0 hours.


title: eTat - Hu0hr - 1

description: HeLa CD4+ cells were transfected with an epitope-tagged eTat plasmid and selected with hygromycin.  Cells were treated with hydroxyurea and collected @0 hours.


title: Interferon gamma-treated 48hrs

status: Public on Jul 25 2003

city: New York

first: Miroslav

last: Blumenberg

state: NY

address: 455 First Ave #874

department: Dermatology

institute: NYU School of Medicine

description: Keratinocytes grown in KGM, transferred to KBM for 24 hrs then treated with IFNg for 48hrs.

source_name: Foreskin keratinocytes


title: eTat  - unsynchronized - 1

description: HeLa CD4+ cells were transfected with an epitope-tagged eTat plasmid and selected with hygromycin.


title: eTat - Hu3hr - 1

description: HeLa CD4+ cells were transfected with an epitope-tagged eTat plasmid and selected with hygromycin. Cells were treated with hydroxyurea and collected @3 hours.


title: eTat - unsynchronized - 2


title: eTat - Hu6hr - 2

description: HeLa CD4+ cells were transfected with an epitope-tagged eTat plasmid and selected with hygromycin. Cells were treated with hydroxyurea and collected @6 hours.


title: eTat - Noco3hr - 1


title: Interferon gamma-treated 24hrs

description: Keratinocytes grown in KGM, transferred to KBM for 24 hrs then treated with IFNg for 24hrs.


title: eTat - Hu9hr - 1

description: HeLa CD4+ cells were transfected with an epitope-tagged eTat plasmid and selected with hygromycin. Cells were treated with hydroxyurea and collected @9 hours.


title: eTat - Noco0hr - 2


title: Interferon gamma-treated 1hr

description: Keratinocytes grown in KGM, transferred to KBM for 24 hrs  then treated with IFNg for 1hr.


title: Interferon gamma-treated 4hrs

description: Keratinocytes grown in KGM, transferred to KBM for 24 hrs then treated with IFNg for 4hrs.


title: 562

status: Public on Jun 26 2003

city: Houston

first: Eric

middle: C

last: Wooten

state: TX

address: One Baylor Plaza

department: Breast Center

institute: Baylor College of Medicine

description: Ab amplified expression data, normalized and modelled

source_name: human breast cancer core biopsy


title: eTat - Hu9hr - 2


title: Synoviocyte TNFalpha EXP sample3

status: Public on Jul 03 2003

city: Dublin

first: Jill

last: Howlin

address: University College Dublin Belfield

department: Pharmacology

country: Ireland

institute: The Conway Institute of Biomedical and Biomolecular Research

description: Arithritic synoviocytes treated with TNFalpha for 24hrs.

source_name: human synoviocytes , synovial biopsies


title: 558


title: eTat - Hu6hr - 1


title: eTat - Hu3hr - 2


title: Synoviocyte TNFalpha EXP

description:
Arthritic synoviocyte cell response to TNFalpha treatment at 4 and 24hrs.
Keywords = synoviocytes, arithritis

source_name: human synoviocytes, synovial biopsies


title: Synoviocyte TNFalpha EXP sample2

description: Arithtic synoviocytes treated with TNF for 4hrs


title: 555


title: 438


title: 458


title: 447


title: 370


title: 437


title: 492


title: 377


title: 413


title: 432


title: 358


title: 356


title: 425


title: 359


title: 118


title: 136


title: 273


title: 51

description: Ab amplified signal, normalized and modeled.


title: 44

description: Antibody amplified expression data, normalized and modeled.


title: Tomo 1h CTRL

status: Public on Jun 22 2003

description:
Untreated control 1hr time point (2nd batch).
Tomo used for IFNg, TNFa and IL1 treatment
Lot batch = Tomo Ctl 1h U95Av2 chip_Norm Signal

source_name: Epidermal Keratinocytes


title: 142


title: 113

description: Ab amplified expression values, normalized and modelled


title: Tomo 24h control

description:
Untreated controls 24hr time point
Tomo used for IFNg, TNFa and IL-1
Lot batch = Tomo C24 U95Av2 chip_Norm Signal


title: 71

description: Ab amplified expression values, normalized and modelled.


title: TomoCont.1h

description:
Cultured epidermal keratinocytes, control=untreated.
Controls used for IFNg, TNFa and IL1 treatment.
1 hr time point
Lot batch = Tomo C1 U95Av2 chip_Norm Signal


title: Tomo 48h control

description:
Untreated controls 48 hr time point
Tomo used for IFNg, TNFa and IL1 treatment
Lot batch = Tomo C48 2nd label U95Av2 chip_Norm Signal


title: Tomo 4h control

description:
Untreated controls 4hr time point.
Tomo used for IFNg, TNFa and IL1 treatment
Lot batch = Tomo C4 U95Av2 chip_Signal


title: HP(BT)

status: Public on Jun 08 2003

city: Los Angeles

first: Joshua

last: Bleharski

state: CA

institute: UCLA

description: total RNA derived from a leprosy lesion

source_name: skin lesion


title: PR(LL)

description: total RNA derived from a leprosy lesion


title: MM(BT)

description: total RNA derived from a leprosy lesion


title: MV(LL)

description: total RNA derived from a leprosy lesion


title: JP(BT)

description: total RNA derived from a leprosy lesion


title: DM(LL)

description: total RNA derived from a leprosy lesion


title: MG(LL)

description: total RNA derived from a leprosy lesion


title: RM(LL)

description: total RNA derived from a leprosy lesion


title: Brazil 22907(BT)

description: total RNA derived from a leprosy lesion


title: Brazil 22613(LL)

description: total RNA derived from a leprosy lesion


title: AG_05414_regrowth

status: Public on May 08 2003

first: Shailender

last: Nagpal

institute: University of Southern California

description:
Fibroblast cell line from normal 73 year old human male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts".  This sample can be compared to GSM6349.
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human

source_name: Fibroblast


title: KB_10025_50%

description:
Fibroblast cell line from normal 4 year old bonobo male.  The  cells were harvested at 50% confluence as described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts".  This file can be compared to GSM6366 where the cells are harvested under standard conditions.
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human

organism: Pan paniscus


title: AG_06235_regrowth

description:
Fibroblast cell line from normal 42 year old human male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts".  This sample can be compared to GSM6352.
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: AG_11745_50%

description:
Fibroblast cell line from normal 43 year old human female.  The  cells were harvested at 50% confluence as described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts".  This file can be compared to GSM6358 where the cells are harvested under standard conditions.
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_9047

description:
Fibroblast cell line from normal 3 year old gorilla male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human

organism: Gorilla gorilla


title: AG_04446_regrowth

description:
Fibroblast cell line from normal 48 year old human male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts".  This file can be compared to GSM6347.
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_8021

description:
Fibroblast cell line from normal 26 year old gorilla female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_8594

description:
Fibroblast cell line from normal 30 year old gorilla female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_8592

description:
Fibroblast cell line from normal 18 year old gorilla male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_7621_50%

description:
Fibroblast cell line from normal 26 year old gorilla male.  The  cells were harvested at 50% confluence as described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts".  This file can be compared to GSM6379 where the cells were harvested under standard conditions.
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_8840

description:
Fibroblast cell line from normal 2 year old gorilla female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: AG_13153_regrowth

description:
Fibroblast cell line from normal 30 year old human male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts".  This sample can be compared to GSM6361.
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_8025

description:
Fibroblast cell line from normal 19 year old bonobo male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_7621

description:
Fibroblast cell line from normal 26 year old gorilla male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts".  This file can be compared to GSM6392 where the cells are harvested at 50% confluence.
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_7500

description:
Fibroblast cell line from normal 19 year old gorilla male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_7801

description:
Fibroblast cell line from normal 24 year old gorilla male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_5047

description:
Fibroblast cell line from normal 19 year old gorilla female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_6278

description:
Fibroblast cell line from normal 35 year old gorilla female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_6268


title: KB_7998

description:
Fibroblast cell line from normal 17 year old bonobo male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: MP(BT)

description: total RNA derived from a leprosy lesion


title: KB_8024

description:
Fibroblast cell line from normal 20 year old bonobo female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_7189


title: KB_5828

description:
Fibroblast cell line from normal 12 year old bonobo male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: AG_05283

description:
Fibroblast cell line from normal 69 year old human male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: AG_13968

description:
Fibroblast cell line from normal 55 year old human female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: AG_13153

description:
Fibroblast cell line from normal 30 year old human male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts".  This file can be compared to GSM6389.
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_6884

description:
Fibroblast cell line from normal 2 year old bonobo female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_10025

description:
Fibroblast cell line from normal 4 year old bonobo male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts".  This file can be compared to GSM6391 where the cells are harvested at 50% confluence.
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_5275

description:
Fibroblast cell line from normal 2 year old bonobo male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_7033

description:
Fibroblast cell line from normal 4 year old bonobo female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: AG_11362

description:
Fibroblast cell line from normal 63 year old human female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: AG_11745

description:
Fibroblast cell line from normal 43 year old human female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts".  This file can be compared to GSM6390 where the cells are harvested at 50% confluence.
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: AG_13144

description:
Fibroblast cell line from normal 69 year old human female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: AG_11020

description:
Fibroblast cell line from normal 79 year old human female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: AG_12988

description:
Fibroblast cell line from normal 56 year old human female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: KB_4512

description:
Fibroblast cell line from normal 9 year old bonobo female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: AG_10942

description:
Fibroblast cell line from normal 50 year old human male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: AG_05844

description:
Fibroblast cell line from normal 57 year old human female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: AG_07999

description:
Fibroblast cell line from normal 32 year old human female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: AG_13927

description:
Fibroblast cell line from normal 45 year old human female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: AG_05838

description:
Fibroblast cell line from normal 36 year old human female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: AG_05414

description:
Fibroblast cell line from normal 73 year old human male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts".  This sample can be compared to GSM6387.
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: AG_06235

description:
Fibroblast cell line from normal 42 year old human male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts".  This sample can be compared to GSM6388.
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: AG_04659

description:
Fibroblast cell line from normal 65 year old human male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: Sensitive Replicate 1

status: Public on Feb 24 2007

city: Shreveport

first: Reinhold

last: Munker

state: LA

address: 1501 Kings Highway

institute: LSU Health Sciences Center

description: See manuscript (Leukemia Research, 2007).

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U95A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the HP GeneArray Scanner .

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.

label: biotin

source_name: cell line

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

extract_protocol: Qiagen column extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: grown in tissue culture medium


title: AG_06952

description:
Fibroblast cell line from normal 73 year old human female.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts"
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: HDMTX_MP-DX-9

status: Public on Apr 21 2003

city: Memphis

first: William

middle: E

last: Evans

state: TN

address: 332 N. Lauderdale St.

department: Pharmaceutical Sciences

institute: St.Jude Children's Research Hospital

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:364, Count:32
Corner- Avg:36544, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:15.267480,SFGene:All
Background:Avg:408.40,Stdev:5.81,Max:426.0,Min:399.9
Noise:Avg:9.27,Stdev:0.43,Max:10.8,Min:8.4
RawQ:13.27
Keywords = ALL

source_name: Primary Acute Lymphoblastic Leukemia Cells


title: LDMTX_MP-DX-4

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:248, Count:32
Corner- Avg:43803, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:17.496950,SFGene:All
Background:Avg:346.00,Stdev:4.31,Max:359.2,Min:337.0
Noise:Avg:9.84,Stdev:0.35,Max:10.9,Min:8.9
RawQ:14.73
Keywords = ALL


title: AG_04446_2

description:
Fibroblast cell line from normal 48 year old human male.  The  cells were grown and harvested under standard conditions described  in Genome Research paper "Comparative analysis of gene expression patterns in human and African great ape cultured fibroblasts".  This file can be compared to GSM6386.
Keywords = African Great Ape, Human Evolution, Fibroblast, Bonobo, Gorilla, Human


title: HDMTX_MP-DX-7

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:239, Count:32
Corner- Avg:38822, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:7.316926,SFGene:All
Background:Avg:371.14,Stdev:5.69,Max:385.0,Min:359.1
Noise:Avg:10.15,Stdev:0.33,Max:11.2,Min:9.4
RawQ:12.76
Keywords = ALL


title: LDMTX_MP-DX-5


title: HDMTX_MP-DX-8


title: MP-DX-2

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:260, Count:32
Corner- Avg:36698, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.910607,SFGene:All
Background:Avg:337.32,Stdev:12.49,Max:369.9,Min:316.0
Noise:Avg:8.88,Stdev:0.47,Max:10.3,Min:7.8
RawQ:12.15
Keywords = ALL


title: MP-DX-5


title: LDMTX_MP-DX-6


title: LDMTX_MP-DX-3

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:344, Count:32
Corner- Avg:44606, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:12.605693,SFGene:All
Background:Avg:445.13,Stdev:15.80,Max:478.5,Min:410.7
Noise:Avg:13.13,Stdev:0.52,Max:14.7,Min:11.6
RawQ:18.16
Keywords = ALL


title: MP-DX-1

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:523, Count:32
Corner- Avg:38268, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:10.581564,SFGene:All
Background:Avg:529.04,Stdev:29.11,Max:602.6,Min:483.5
Noise:Avg:16.79,Stdev:1.70,Max:23.5,Min:13.4
RawQ:16.87
Keywords = ALL


title: LDMTX_MP-DX-9


title: MP-DX-7


title: MP-DX-3


title: MP-DX-9


title: MP-DX-6


title: LDMTX_MP-DX-12


title: LDMTX_MP-DX-10


title: MP-DX-8


title: LDMTX_MP-DX-13


title: LDMTX_MP-DX-11


title: LDMTX_MP-DX-8


title: MP-DX-4


title: LDMTX_MP-DX-7


title: HDMTX_MP-DX-10


title: LDMTX_MP-DX-14


title: HDMTX-DX-18

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:285, Count:32
Corner- Avg:33775, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:9.132693,SFGene:All
Background:Avg:254.61,Stdev:1.76,Max:260.0,Min:249.4
Noise:Avg:6.85,Stdev:0.19,Max:7.4,Min:6.3
RawQ:9.74
Keywords = ALL


title: LDMTX_MP-DX-15


title: HDMTX-DX-17


title: HDMTX-DX-10

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:201, Count:32
Corner- Avg:37367, Count:32
BF:testadult.CHP Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:8.311234,SFGene:All
Background:Avg:442.52,Stdev:8.47,Max:475.3,Min:427.8
Noise:Avg:10.13,Stdev:0.36,Max:11.2,Min:9.2
RawQ:13.41
Keywords = ALL


title: HDMTX-DX-11

description:
Sample Type: human total RNA
Sample User: dpatel
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:279, Count:32
Corner- Avg:39991, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:6.675019,SFGene:All
Background:Avg:404.51,Stdev:3.70,Max:415.5,Min:396.6
Noise:Avg:9.59,Stdev:0.26,Max:10.5,Min:8.7
RawQ:13.42
Keywords = ALL


title: HDMTX-DX-12

description:
Operator Name:
Sample Type:
Sample Description:
Comments:
Reagents:
Reagent Lot:
Algorithm: Statistical
Corner+ Avg:258, Count:32
Corner- Avg:36872, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:12.314540,SFGene:All
Background:Avg:749.42,Stdev:37.77,Max:891.0,Min:667.6
Noise:Avg:16.05,Stdev:3.93,Max:36.0,Min:11.9
RawQ:18.21
Keywords = ALL


title: HDMTX-DX-14

description:
Corner+ Avg:444, Count:32
Corner- Avg:45544, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:2.378481,SFGene:All
Background:Avg:481.97,Stdev:8.21,Max:502.2,Min:450.2
Noise:Avg:17.00,Stdev:0.54,Max:18.7,Min:15.1
RawQ:19.54


title: HDMTX-DX-15

description:
Operator Name:
Sample Type:
Sample Description:
Comments:
Reagents:
Reagent Lot:
Algorithm: Statistical
Corner+ Avg:378, Count:32
Corner- Avg:32046, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:8.905122,SFGene:All
Background:Avg:591.35,Stdev:17.35,Max:645.6,Min:568.9
Noise:Avg:13.72,Stdev:0.52,Max:15.2,Min:12.2
RawQ:17.88
Keywords = ALL


title: HDMTX-DX-13


title: MP-DX-12


title: HDMTX-DX-21


title: HDMTX-DX-19

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:230, Count:32
Corner- Avg:36316, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:11.636765,SFGene:All
Background:Avg:431.67,Stdev:5.20,Max:442.8,Min:417.0
Noise:Avg:10.82,Stdev:0.32,Max:11.7,Min:9.9
RawQ:14.42
Keywords = ALL


title: LDMTX_MP-DX-16

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:198, Count:32
Corner- Avg:34063, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:16.661921,SFGene:All
Background:Avg:350.18,Stdev:6.94,Max:371.2,Min:338.0
Noise:Avg:9.79,Stdev:0.45,Max:11.9,Min:8.8
RawQ:13.14
Keywords = ALL


title: MP-DX-11


title: HDMTX-DX-1


title: HDMTX-DX-3

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments (Sample):
Experiment User: jmorris
Probe Array Lot: 9914791 Exp 2-17-01
Comments (Exp):
Reagents: (none)
Reagent Lot: (none)
Algorithm: Statistical
Corner+ Avg:203, Count:32
Corner- Avg:27300, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:7.478643,SFGene:All
Background:Avg:422.27,Stdev:10.15,Max:448.3,Min:398.5
Noise:Avg:11.63,Stdev:0.35,Max:12.5,Min:10.4
RawQ:16.38
Keywords = ALL


title: HDMTX-DX-20

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:493, Count:32
Corner- Avg:38326, Count:32
BF:testadult.CHP Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.589355,SFGene:All
Background:Avg:441.73,Stdev:7.77,Max:458.3,Min:425.9
Noise:Avg:10.12,Stdev:0.29,Max:11.1,Min:9.4
RawQ:14.32
Keywords = ALL


title: HDMTX-DX-22


title: HDMTX-DX-5

description:
Operator Name:
Sample Type:
Sample Description:
Comments:
Reagents:
Reagent Lot:
Algorithm: Statistical
Corner+ Avg:404, Count:32
Corner- Avg:39671, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:4.818338,SFGene:All
Background:Avg:542.73,Stdev:10.40,Max:572.5,Min:520.5
Noise:Avg:14.47,Stdev:1.34,Max:19.9,Min:12.3
RawQ:15.60
Keywords = ALL


title: HDMTX-DX-16

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:351, Count:32
Corner- Avg:36252, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:10.785266,SFGene:All
Background:Avg:323.88,Stdev:5.02,Max:340.4,Min:313.2
Noise:Avg:7.64,Stdev:0.27,Max:8.6,Min:7.0
RawQ:11.43
Keywords = ALL


title: HDMTX-DX-4

description:
Sample Type: human total RNA
Sample User: dpatel
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:354, Count:32
Corner- Avg:32797, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:6.210512,SFGene:All
Background:Avg:294.21,Stdev:4.75,Max:307.6,Min:284.7
Noise:Avg:7.86,Stdev:0.23,Max:8.5,Min:7.2
RawQ:12.32
Keywords = ALL


title: MP-DX-10

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:364, Count:32
Corner- Avg:36544, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:15.267480,SFGene:All
Background:Avg:408.40,Stdev:5.81,Max:426.0,Min:399.9
Noise:Avg:9.27,Stdev:0.43,Max:10.8,Min:8.4
RawQ:13.27
Keywords = ALL


title: HDMTX_MP-DX-1

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:215, Count:32
Corner- Avg:35328, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:11.352031,SFGene:All
Background:Avg:320.18,Stdev:5.90,Max:336.6,Min:306.8
Noise:Avg:7.65,Stdev:0.20,Max:8.2,Min:6.7
RawQ:11.39
Keywords = ALL


title: HDMTX-DX-6

description:
Sample Type: human total RNA
Sample User: dpatel
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:265, Count:32
Corner- Avg:39620, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:6.320118,SFGene:All
Background:Avg:279.64,Stdev:2.80,Max:289.3,Min:274.2
Noise:Avg:6.89,Stdev:0.23,Max:7.9,Min:6.4
RawQ:10.33
Keywords = ALL


title: HDMTX-DX-2


title: HDMTX-DX-8


title: HDMTX-DX-7


title: HDMTX-DX-9

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:557, Count:32
Corner- Avg:40495, Count:32
BF:testadult.CHP Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:4.499681,SFGene:All
Background:Avg:450.41,Stdev:8.85,Max:479.1,Min:424.3
Noise:Avg:19.10,Stdev:0.96,Max:23.9,Min:16.5
RawQ:14.81
Keywords = ALL


title: HDMTX_MP-DX-2

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:523, Count:32
Corner- Avg:38268, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:10.581564,SFGene:All
Background:Avg:529.04,Stdev:29.11,Max:602.6,Min:483.5
Noise:Avg:16.79,Stdev:1.70,Max:23.5,Min:13.4
RawQ:16.87
Keywords = ALL


title: HDMTX_MP-DX-5

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:248, Count:32
Corner- Avg:43803, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:17.496950,SFGene:All
Background:Avg:346.00,Stdev:4.31,Max:359.2,Min:337.0
Noise:Avg:9.84,Stdev:0.35,Max:10.9,Min:8.9
RawQ:14.73
Keywords = ALL


title: HDMTX_MP-DX-3


title: LDMTX_MP-DX-2

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:260, Count:32
Corner- Avg:36698, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.910607,SFGene:All
Background:Avg:337.32,Stdev:12.49,Max:369.9,Min:316.0
Noise:Avg:8.88,Stdev:0.47,Max:10.3,Min:7.8
RawQ:12.15
Keywords = ALL


title: HDMTX_MP-DX-4


title: LDMTX_MP-DX-1


title: LDMTX_MP-15

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:242, Count:32
Corner- Avg:41343, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:8.144650,SFGene:All
Background:Avg:497.46,Stdev:4.99,Max:508.4,Min:487.1
Noise:Avg:12.21,Stdev:0.36,Max:13.1,Min:10.9
RawQ:15.49
Keywords = ALL


title: HDMTX_MP-DX-6

description:
Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:239, Count:32
Corner- Avg:38822, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:7.316926,SFGene:All
Background:Avg:371.14,Stdev:5.69,Max:385.0,Min:359.1
Noise:Avg:10.15,Stdev:0.33,Max:11.2,Min:9.4
RawQ:12.76
Keywords = ALL


title: HDMTX-4

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:204, Count:32
Corner- Avg:38726, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:6.096644,SFGene:All
Background:Avg:515.16,Stdev:16.02,Max:542.9,Min:478.8
Noise:Avg:10.41,Stdev:0.39,Max:11.8,Min:9.5
RawQ:14.37
Keywords = ALL


title: HDMTX-5

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:275, Count:32
Corner- Avg:41417, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.686159,SFGene:All
Background:Avg:328.66,Stdev:5.68,Max:345.4,Min:318.5
Noise:Avg:7.07,Stdev:0.19,Max:7.7,Min:6.6
RawQ:10.88
Keywords = ALL


title: MP-2

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:387, Count:32
Corner- Avg:36935, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:4.951684,SFGene:All
Background:Avg:493.24,Stdev:7.44,Max:514.6,Min:480.1
Noise:Avg:11.19,Stdev:0.52,Max:12.8,Min:9.4
RawQ:14.58
Keywords = ALL


title: MP-3


title: HDMTX-8

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:318, Count:32
Corner- Avg:40188, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.120892,SFGene:All
Background:Avg:521.89,Stdev:28.41,Max:587.8,Min:478.3
Noise:Avg:9.78,Stdev:0.69,Max:11.9,Min:8.4
RawQ:14.30
Keywords = ALL


title: HDMTX-6

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:334, Count:32
Corner- Avg:38033, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:4.198062,SFGene:All
Background:Avg:363.07,Stdev:3.48,Max:373.7,Min:355.4
Noise:Avg:7.99,Stdev:0.29,Max:8.7,Min:7.1
RawQ:11.86
Keywords = ALL


title: MP-5

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:427, Count:32
Corner- Avg:35937, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:4.007276,SFGene:All
Background:Avg:606.87,Stdev:5.01,Max:620.7,Min:590.1
Noise:Avg:13.28,Stdev:0.38,Max:14.6,Min:12.2
RawQ:16.64
Keywords = ALL


title: HDMTX-9

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:494, Count:32
Corner- Avg:27549, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:7.694901,SFGene:All
Background:Avg:402.38,Stdev:3.13,Max:414.0,Min:396.1
Noise:Avg:8.80,Stdev:0.24,Max:9.4,Min:8.1
RawQ:12.70
Keywords = ALL


title: MP-10

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:173, Count:32
Corner- Avg:38236, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:10.340834,SFGene:All
Background:Avg:635.33,Stdev:20.39,Max:681.8,Min:583.2
Noise:Avg:11.21,Stdev:0.55,Max:13.1,Min:9.7
RawQ:16.42
Keywords = ALL


title: LDMTX_MP-16

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:160, Count:32
Corner- Avg:26213, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.273146,SFGene:All
Background:Avg:392.26,Stdev:13.62,Max:427.1,Min:369.8
Noise:Avg:9.71,Stdev:0.44,Max:11.0,Min:8.7
RawQ:12.69
Keywords = ALL


title: MP-6

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:480, Count:32
Corner- Avg:33296, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:8.668220,SFGene:All
Background:Avg:772.79,Stdev:31.84,Max:891.5,Min:725.7
Noise:Avg:22.39,Stdev:2.11,Max:30.3,Min:19.6
RawQ:22.98
Keywords = ALL


title: MP-7

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:308, Count:32
Corner- Avg:38633, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:4.582736,SFGene:All
Background:Avg:422.88,Stdev:4.58,Max:441.7,Min:411.8
Noise:Avg:8.65,Stdev:0.46,Max:9.9,Min:7.1
RawQ:12.76
Keywords = ALL


title: MP-4


title: MP-11

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:333, Count:32
Corner- Avg:38236, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:8.939073,SFGene:All
Background:Avg:446.35,Stdev:3.49,Max:456.1,Min:438.0
Noise:Avg:10.03,Stdev:0.25,Max:10.8,Min:9.3
RawQ:14.11
Keywords = ALL


title: MP-1

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:306, Count:32
Corner- Avg:34655, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:6.310359,SFGene:All
Background:Avg:579.31,Stdev:20.01,Max:616.0,Min:535.1
Noise:Avg:14.79,Stdev:0.63,Max:16.8,Min:12.9
RawQ:17.41
Keywords = ALL


title: HDMTX-7

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:278, Count:32
Corner- Avg:40129, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:4.219163,SFGene:All
Background:Avg:415.84,Stdev:15.46,Max:471.8,Min:386.3
Noise:Avg:9.28,Stdev:0.44,Max:11.1,Min:8.1
RawQ:12.67
Keywords = ALL


title: MP-12

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:288, Count:32
Corner- Avg:31510, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.414648,SFGene:All
Background:Avg:457.38,Stdev:5.50,Max:474.0,Min:445.1
Noise:Avg:9.32,Stdev:0.18,Max:9.8,Min:8.8
RawQ:13.50
Keywords = ALL


title: HDMTX-10

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:344, Count:32
Corner- Avg:37169, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.367657,SFGene:All
Background:Avg:396.15,Stdev:5.74,Max:419.3,Min:387.1
Noise:Avg:8.65,Stdev:0.21,Max:9.3,Min:7.9
RawQ:12.60
Keywords = ALL


title: MP-8

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:272, Count:32
Corner- Avg:40309, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:6.578528,SFGene:All
Background:Avg:628.94,Stdev:13.98,Max:668.5,Min:602.3
Noise:Avg:15.58,Stdev:0.48,Max:16.9,Min:14.5
RawQ:17.99
Keywords = ALL


title: HDMTX_MP-3

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:179, Count:32
Corner- Avg:32377, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:10.951877,SFGene:All
Background:Avg:533.85,Stdev:14.67,Max:561.2,Min:501.0
Noise:Avg:9.33,Stdev:0.31,Max:10.1,Min:8.3
RawQ:14.88
Keywords = ALL


title: HDMTX_MP-2


title: MP-9


title: HDMTX_MP-1

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:595, Count:32
Corner- Avg:33202, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.146851,SFGene:All
Background:Avg:632.03,Stdev:10.66,Max:661.0,Min:610.6
Noise:Avg:13.36,Stdev:0.48,Max:14.8,Min:11.9
RawQ:16.73
Keywords = ALL


title: HDMTX-11

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:285, Count:32
Corner- Avg:38232, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:14.069105,SFGene:All
Background:Avg:538.48,Stdev:11.89,Max:554.2,Min:504.1
Noise:Avg:8.86,Stdev:0.20,Max:9.3,Min:8.2
RawQ:14.62
Keywords = ALL


title: HDMTX_MP-4

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:552, Count:32
Corner- Avg:39747, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:6.128169,SFGene:All
Background:Avg:544.60,Stdev:3.21,Max:553.7,Min:534.1
Noise:Avg:11.73,Stdev:0.39,Max:12.7,Min:10.2
RawQ:15.46
Keywords = ALL


title: HDMTX-12

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:456, Count:32
Corner- Avg:31434, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.482294,SFGene:All
Background:Avg:672.81,Stdev:8.83,Max:695.1,Min:653.5
Noise:Avg:14.89,Stdev:0.47,Max:16.2,Min:13.8
RawQ:17.21
Keywords = ALL


title: HDMTX_MP-5


title: LDMTX_MP-1

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:340, Count:32
Corner- Avg:29838, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.649508,SFGene:All
Background:Avg:466.28,Stdev:4.94,Max:481.3,Min:455.3
Noise:Avg:9.96,Stdev:0.21,Max:10.7,Min:9.3
RawQ:13.78
Keywords = ALL


title: HDMTX_MP-6

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:265, Count:32
Corner- Avg:37187, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:7.325640,SFGene:All
Background:Avg:391.32,Stdev:10.27,Max:422.7,Min:375.6
Noise:Avg:8.95,Stdev:0.47,Max:10.4,Min:7.8
RawQ:12.57
Keywords = ALL


title: LDMTX_MP-2

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:208, Count:32
Corner- Avg:35505, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:11.218446,SFGene:All
Background:Avg:425.32,Stdev:14.65,Max:488.3,Min:396.6
Noise:Avg:9.75,Stdev:1.22,Max:14.7,Min:7.3
RawQ:13.05
Keywords = ALL


title: HDMTX_MP-8

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:343, Count:32
Corner- Avg:35802, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:6.656495,SFGene:All
Background:Avg:490.51,Stdev:6.18,Max:507.2,Min:477.7
Noise:Avg:9.41,Stdev:0.30,Max:10.4,Min:8.5
RawQ:14.06
Keywords = ALL


title: HDMTX-15

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:366, Count:32
Corner- Avg:40460, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:3.576670,SFGene:All
Background:Avg:393.51,Stdev:6.89,Max:411.1,Min:376.0
Noise:Avg:8.31,Stdev:0.25,Max:9.0,Min:7.7
RawQ:12.20
Keywords = ALL


title: HDMTX_MP-9


title: LDMTX_MP-5


title: HDMTX_MP-7

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:364, Count:32
Corner- Avg:38122, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.656439,SFGene:All
Background:Avg:510.04,Stdev:16.15,Max:569.6,Min:474.6
Noise:Avg:12.10,Stdev:0.85,Max:16.1,Min:10.6
RawQ:15.05
Keywords = ALL


title: HDMTX-13

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:326, Count:32
Corner- Avg:31904, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:7.404772,SFGene:All
Background:Avg:585.04,Stdev:47.68,Max:671.6,Min:469.8
Noise:Avg:12.17,Stdev:0.93,Max:15.1,Min:10.0
RawQ:15.78
Keywords = ALL


title: HDMTX-18

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:330, Count:32
Corner- Avg:41279, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.512681,SFGene:All
Background:Avg:390.00,Stdev:5.76,Max:401.2,Min:375.3
Noise:Avg:7.98,Stdev:0.33,Max:9.2,Min:7.0
RawQ:12.14
Keywords = ALL


title: HDMTX-16

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:299, Count:32
Corner- Avg:40383, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:4.527624,SFGene:All
Background:Avg:496.28,Stdev:77.48,Max:682.9,Min:347.6
Noise:Avg:11.61,Stdev:1.35,Max:14.8,Min:7.9
RawQ:13.98
Keywords = ALL


title: HDMTX-17

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:325, Count:32
Corner- Avg:40125, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:4.084172,SFGene:All
Background:Avg:636.91,Stdev:54.68,Max:958.1,Min:573.4
Noise:Avg:12.64,Stdev:5.61,Max:47.9,Min:9.0
RawQ:15.96
Keywords = ALL


title: HDMTX-21

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:393, Count:32
Corner- Avg:35118, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:4.876832,SFGene:All
Background:Avg:539.48,Stdev:6.19,Max:562.3,Min:520.1
Noise:Avg:10.84,Stdev:0.32,Max:11.7,Min:9.6
RawQ:14.98
Keywords = ALL


title: LDMTX_MP-4

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:249, Count:32
Corner- Avg:35848, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:12.020033,SFGene:All
Background:Avg:505.64,Stdev:7.02,Max:521.3,Min:492.4
Noise:Avg:11.73,Stdev:0.48,Max:13.1,Min:10.3
RawQ:15.34
Keywords = ALL


title: LDMTX_MP-9

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:242, Count:32
Corner- Avg:41343, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:8.144650,SFGene:All
Background:Avg:497.46,Stdev:4.99,Max:508.4,Min:487.1
Noise:Avg:12.21,Stdev:0.36,Max:13.1,Min:10.9
RawQ:15.49
Keywords = ALL


title: LDMTX_MP-6

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:273, Count:32
Corner- Avg:33301, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:8.009797,SFGene:All
Background:Avg:488.49,Stdev:12.51,Max:512.3,Min:457.4
Noise:Avg:11.13,Stdev:0.38,Max:12.7,Min:9.9
RawQ:14.77
Keywords = ALL


title: LDMTX_MP-7


title: HDMTX-22

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:262, Count:32
Corner- Avg:29837, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:6.318184,SFGene:All
Background:Avg:496.31,Stdev:11.28,Max:524.2,Min:464.0
Noise:Avg:9.36,Stdev:0.32,Max:10.6,Min:8.4
RawQ:13.92
Keywords = ALL


title: LDMTX_MP-8

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:215, Count:32
Corner- Avg:29814, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.679840,SFGene:All
Background:Avg:701.58,Stdev:18.01,Max:727.4,Min:653.6
Noise:Avg:12.10,Stdev:0.29,Max:13.6,Min:11.3
RawQ:17.41
Keywords = ALL


title: LDMTX_MP-3

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:222, Count:32
Corner- Avg:39136, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:8.201396,SFGene:All
Background:Avg:442.52,Stdev:39.36,Max:494.3,Min:339.0
Noise:Avg:9.21,Stdev:0.52,Max:11.0,Min:8.1
RawQ:13.25
Keywords = ALL


title: HDMTX-20

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:277, Count:32
Corner- Avg:25496, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.322393,SFGene:All
Background:Avg:433.71,Stdev:3.38,Max:443.8,Min:423.9
Noise:Avg:9.46,Stdev:0.28,Max:10.3,Min:8.5
RawQ:13.37
Keywords = ALL


title: HDMTX-14

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:215, Count:32
Corner- Avg:34690, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:20.939404,SFGene:All
Background:Avg:370.42,Stdev:5.24,Max:379.7,Min:353.7
Noise:Avg:7.00,Stdev:0.17,Max:7.5,Min:6.1
RawQ:11.93
Keywords = ALL


title: HDMTX-19

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:366, Count:32
Corner- Avg:40249, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:4.871372,SFGene:All
Background:Avg:575.57,Stdev:36.37,Max:645.9,Min:509.4
Noise:Avg:10.66,Stdev:0.59,Max:12.9,Min:9.2
RawQ:15.10
Keywords = ALL


title: LDMTX_MP-11

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:270, Count:32
Corner- Avg:37352, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:3.941622,SFGene:All
Background:Avg:657.26,Stdev:6.43,Max:677.7,Min:641.9
Noise:Avg:12.21,Stdev:0.52,Max:14.7,Min:10.9
RawQ:16.85
Keywords = ALL


title: LDMTX_MP-10

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:599, Count:32
Corner- Avg:41164, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:3.223902,SFGene:All
Background:Avg:507.18,Stdev:7.13,Max:525.3,Min:491.5
Noise:Avg:12.26,Stdev:0.52,Max:14.6,Min:11.2
RawQ:14.66
Keywords = ALL


title: LDMTX_MP-12


title: HDMTX-1

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:455, Count:32
Corner- Avg:41098, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:4.567039,SFGene:All
Background:Avg:398.07,Stdev:5.96,Max:409.9,Min:382.9
Noise:Avg:8.80,Stdev:0.28,Max:9.5,Min:8.1
RawQ:12.43
Keywords = ALL


title: TN 118, 48 hrs

status: Public on Apr 14 2003

city: Stanford

first: Said

last: Talbi

department: Reproductive Endocrinology

institute: Stanford University School of Medicine

description: Pt sample TN 118, after 48 hrs of decidualization with cAMP

source_name: human endometrial stromal RNA


title: HDMTX_MP-10

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:343, Count:32
Corner- Avg:35802, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:6.656495,SFGene:All
Background:Avg:490.51,Stdev:6.18,Max:507.2,Min:477.7
Noise:Avg:9.41,Stdev:0.30,Max:10.4,Min:8.5
RawQ:14.06
Keywords = ALL


title: HDMTX-2

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:227, Count:32
Corner- Avg:34019, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:11.805062,SFGene:All
Background:Avg:372.30,Stdev:5.74,Max:386.1,Min:360.6
Noise:Avg:7.23,Stdev:0.21,Max:8.0,Min:6.5
RawQ:11.65
Keywords = ALL


title: TN 118, 36 hrs

description: Pt sample TN 118, after 36 hrs of decidualization with cAMP


title: TN 51, 12hrs

description: TN 51, after 12 hrs of decidualization with cAMP


title: LDMTX_MP-14

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:163, Count:32
Corner- Avg:30417, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:6.501025,SFGene:All
Background:Avg:349.21,Stdev:5.59,Max:365.1,Min:336.9
Noise:Avg:8.08,Stdev:0.27,Max:8.9,Min:7.2
RawQ:11.68
Keywords = ALL


title: TN 118, 12 hrs

description: Pt sample TN 118, after 12 hrs of decidualization with cAMP


title: TN 51, 48 hrs

description: Pt sample TN 51, after 48 hrs of decidualization with cAMP


title: LDMTX_MP-13

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: dpatel
Algorithm: Statistical
Corner+ Avg:583, Count:32
Corner- Avg:40805, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.773825,SFGene:All
Background:Avg:491.31,Stdev:4.24,Max:508.5,Min:482.1
Noise:Avg:10.66,Stdev:0.45,Max:12.2,Min:9.3
RawQ:15.28
Keywords = ALL


title: HDMTX-3

description:
Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:273, Count:32
Corner- Avg:37090, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.683659,SFGene:All
Background:Avg:409.43,Stdev:11.84,Max:460.3,Min:388.3
Noise:Avg:8.85,Stdev:0.62,Max:11.7,Min:7.9
RawQ:12.28
Keywords = ALL


title: TN 51, 36 hrs

description: Pt sample TN 51, after 36 hrs of decidualization with cAMP


title: Universal reference GeneChip 3

status: Public on Mar 18 2003

city: San Francisco

first: David

middle: J

last: Erle

institute: University of California San Francisco

description:
Purchased from Stratagene. RNA pooled from 10 human cell lines:
Adenocarcinoma, mammary gland
Hepatoblastoma, liver
Adenocarcinoma, cervix
Embryonal carcinoma, testis
Glioblastoma, brain
Melanoma
Liposarcoma
Histiocytic lymphoma; macrophase; histocyte
Lymphoblastic leukemia
Plasmacytoma; myeloma; B lymphocyte

source_name: Stratagene Universal Human Reference RNA


title: TN 51, 24 hrs

description: TN 51, after 24 hrs decidualization with cAMP


title: TN 118, 24 hrs

description: TN 118, after 24 hrs of decidualization with cAMP


title: TN 118, 2 hrs

description: Pt sample TN 118, after 2 hrs of decidualization with cAMP


title: TN 51, 0 hrs

description: Pt Sample TN 51, 0 hr time point


title: K562 GeneChip 2

description: K562 erythroleukemia cells (American Type Culture Collection CCL-243) were cultured in RPMI-1640 medium with L-glutamine supplemented with 10% fetal bovine serum, 100 IU/ml penicillin, and 100 microg/ml streptomycin. Cells were maintained at 37 deg C under 5% CO2/95% air in a humidified incubator.

source_name: K562 erythroleukemia cells


title: TN 51, 2 hrs

description: TN 51, after 2 hrs of decidualization with cAMP


title: TN 118, 0 hrs

description: Pt sample TN 118, 0 hr expression data


title: Universal reference GeneChip 2


title: K562 GeneChip 1


title: Universal reference GeneChip 1


title: H9RGV99031201

status: Public on Dec 06 2002

city: San Diego

first: John

middle: R

last: Walker

address: 10675 John Jay Hopkins

institute: Genomics Institute of the Novartis Research Foundation

description:
Large-scale analysis of the human transcriptome.
HepG2 cell line
Source: ATCC, HB-8065
Analyzed using the Affymetrix MAS4 algorithm.
Background: Avg: 86.08  Stdv: 3.36  Min: 79.57  Max: 92.19


title: Control-4

status: Public on Jan 19 2006

city: Atlanta

first: Michael

last: Zilliox

state: GA

address: 1510 Clifton Road

department: Microbiology and Immunology

institute: Emory University School of Medicine

description: CD14+ monocytes were grown for seven days in IL-4 and GM-CSF.

data_processing: Robust Multi-Array Analysis

source_name: monocyte-derived dendritic cells


title: LEP Sca1-ve - Liver Endothelial Progenitor Sca1-ve cells Sample 3

status: Public on Mar 28 2006

city: La Jolla

first: Sunil

last: Kurian

address: 10550 N Torrey Pines Road

department: Molecular and Experimental Medicine

institute: The Scripps Research Institute

description: While others have reported that fetal liver contains a population of endothelial progenitors based on expression of cell surface markers or culture assays, this is the first proof of a CD31+Sca1+ progenitor by demonstrating highly efficient in vivo angiogenesis and a direct connection to the host vasculature. We have developed a novel isolation method based on collagenase digestion and culture on a fetal liver-derived feeder layer and demonstrate that the feeder cells or their supernatants are required for endothelial progenitor survival and proliferation. Proteogenomic profiling of the endothelial progenitors and the feeder cells was done with tandem mass spectrometry proteomics using MudPIT and gene transcript expression profiling using high density DNA microarrays. This approach identified a number of gene transcripts, proteins and candidate growth factor pathways that are likely to be involved in endothelial progenitor growth, differentiation and angiogenesis.

data_processing: Affymetrix GCOS data

label: SAPE

organism: Mus musculus

source_name: fetal Liver

tag: Endothelial cells


title: n9t0hPx

status: Public on Jan 17 2006

city: Bethesda

first: Anthony

middle: F.

last: Suffredini

state: MD

address: Building 10, Rm 7D43, 10 Center Drive

department: Critical Care Medicine Department

institute: National Institutes of Health

description: "Whole blood cell RNA was isolated at baseline, 3 h, 6 h, 24 h , and 7days after intravenous endotoxin challenge using PAXgene blood RNA tubes.  Total RNA was extracted and treated with DNase 1 as per PAXgene Blood RNA kit protocol with the following modifications: after 2 h incubation at room temperature, blood samples were kept for minimum 24 h at 4°C and total RNA precipitated overnight with 3M NaAc and 100% ethanol.  All samples were processed within 72 h from time of collection. Double stranded cDNA was synthesized from total RNA (5 to 20 µg) using 7-d(T)24  primer and SuperScriptä Double-Stranded cDNA Synthesis Kit and purified by phase lock gel-phenol/chloroform extraction followed by ethanol precipitation. Biotin-labeled cRNA was prepared by in vitro transcription using HighYieldä RNA Transcript Labeling Kit followed by fragmentation with 5X fragmentation buffer.  Fragmented cRNA (10 µg) was hybridized to Affymetrix Hu95Av2 oligonucleotide probe arrays for 16 h at 45°C.  After removal of hybridization fluid, the arrays were washed, stained with streptavidin phycoerythrin (SAPE), and signal amplified by anti-streptavidin antibody using Affymetrix Fluidics Station 400.  Probe set signals were measured using Agilent GeneArray Scanner (Affymetrixâ, Santa Clara, CA)."

hyb_protocol: standard Affymetrix procedures

scan_protocol: standard Affymetrix procedures

data_processing: Affymetrix Microarray Suite version 4.0

source_name: human whole blood (healthy subject)

tag: "female subject, 18-45 yrs, whole blood cells prior to (baseline - 0 h) intravenous endotoxin challenge"


title: 7237 N43

status: Public on Mar 09 2005

city: Chicago

first: M Rosario

last: Hernandez

state: IL

address: 330 Chicago Avenue

department: Ophthalmology

institute: Northwestern University

description: Astrocytes from optic nerve head of 68-year-old woman without glaucoma, right eye

source_name: Primary optic nerve head astrocytes


title: 813.3PBMC

status: Public on Aug 11 2004

city: Cincinnati

last: Barnes

address: 3333 Burnet Ave

department: Rheumatology

institute: Cincinnati Childrens Hospital Medical Center

description:
PBMC isolated by Ficoll gradient centrifugation from control
Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course.
Keywords = Control, peripheral blood mononuclear cell (PBMC)

source_name: PBMC


title: Experiment 4 + Vitamin D

status: Public on Nov 01 2003

city: Natick

first: Larry

middle: Allen

last: Sonna

address: 42 Kansas Street

department: Thermal and Mountain Medicine Division

institute: USARIEM

description: CaCo cells exposed to control conditions or Vitamin D for 24 hours

source_name: CaCo