title: baseline_yri_GM19222_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19222.

source_name: Lymphoblastoid cell lines derived from GM19222


title: baseline_yri_GM19209_rep1

status: Public on Aug 13 2009

type: RNA

city: Philadelphia

first: Renuka

last: Nayak

state: PA

address: 3516 Civic Center Blvd

country: USA

institute: HHMI, University of Pennsylvania

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19209.

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: Lymphoblastoid cell lines derived from GM19209

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

growth_protocol: The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.

extract_protocol: RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions

tag: coriell cell line repository identifier


title: baseline_yri_GM19210_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19210.

source_name: Lymphoblastoid cell lines derived from GM19210


title: E14 clone with pSicoR-mCherry Chd1 shRNAi4 C4i2

city: San Francisco

first: Miguel

last: Ramalho-Santos

state: CA

address: 35 Medical Center Way

department: Eli and Edythe Broad Center of Regeneration Medicine

institute: UCSF

description: Gene expression data of ES cells grown in normal ES cell conditions.

hyb_protocol: According to manufacturer's instructions at the Genomics Core Facility of the Gladstones Institutes.

data_processing: RMA

label: Biotin

organism: Mus musculus

source_name: ES cells, Chd1-deficient

growth_protocol: Cells on gelatin-coated plates with ES cell medium with 15% KSR and recombinant LIF.

extract_protocol: RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen).

treatment_protocol: Cells trypsinized with 0.05% Trypsin for 3min at 37C and resuspended in PBS with trypsin inactivator.

tag: cell line

value: E14 clone C4i2


title: K562 Pool_61

city: Woodbury

first: Chris

last: Zaleski

state: NY

address: 500 Sunnyside Blvd

institute: Cold Spring Harbor Labs

description: single chip, 1 replicate

hyb_protocol: 2 micrograms of  double-stranded cDNA were labeled and hybridized to Affymetrix tiling arrays containing probes against non-repepetitive portions of human chromosomes 21 and 22 essentially as described in Kapranov et al, Science. 2007 Jun 8;316(5830):1484-8.

scan_protocol: Arrays were scanned on Affymetrix GCS3000 scanner

data_processing:
See supplement materials of Djebali, S, et al (2009) Nature in press
Number Sequences: 10, Data: signal, Scale: Linear, AlgName: TAS, AlgVersion: 1.1.01, probe_coordinate_convention: 0_indexed_center

molecule: polyA RNA

source_name: BD SMARTTM RACE cDNA – K562

label_protocol: 2 micrograms of polyA+ RNA were converted into double-stranded cDNA essentially as described in Kapranov et al, Science. 2007 Jun 8;316(5830):1484-8.

growth_protocol: 11 tissues poly A+ RNA was purchased and 5 cell lines were grown as suggested by ATCC

extract_protocol: see Kapranov, et al Science 2002

tag: tissue

value: K562 cell line


title: E14 clone with pSicoR-mCherry empty vector E1

scan_protocol: According to manufacturer's instructions at the Genomics Core Facility of the Gladstones Institutes.

source_name: ES cells, control


title: K562 Pool_63

description: single chip, 1 replicate


title: K562 Pool_58

description: single chip, 1 replicate


title: AG13150

status: Public on Aug 21 2009

city: Boston

first: Ben

middle: S.

last: Wittner

state: MA

address: 149 13th Street

department: Center for Cancer Research

institute: Massachusetts General Hospital

description: AG13150 fibroblast cell line

hyb_protocol: Microarray = Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2

scan_protocol: Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS

data_processing: MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100

label_protocol: Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)

growth_protocol: fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin

extract_protocol: QIAGEN RNeasy protocol and reagents for extraction of total RNA

tag: age

tag: sex

value: F

tag: race

value: cau

value: Skin


title: K562 Pool_57

description: single chip, 1 replicate


title: K562 Pool_59

description: single chip, 1 replicate


title: K562 Pool_60

description: single chip, 1 replicate


title: K562 Pool_62

description: single chip, 1 replicate


title: K562 Pool_56

description: single chip, 1 replicate


title: baseline_yri_GM19207_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19207.

source_name: Lymphoblastoid cell lines derived from GM19207


title: baseline_yri_GM19201_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19201.

source_name: Lymphoblastoid cell lines derived from GM19201


title: baseline_yri_GM19204_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19204.

source_name: Lymphoblastoid cell lines derived from GM19204


title: baseline_yri_GM19203_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19203.

source_name: Lymphoblastoid cell lines derived from GM19203


title: K562 Pool_55

description: single chip, 1 replicate


title: baseline_yri_GM19200_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19200.

source_name: Lymphoblastoid cell lines derived from GM19200


title: baseline_yri_GM19192_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19192.

source_name: Lymphoblastoid cell lines derived from GM19192


title: baseline_yri_GM19206_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19206.

source_name: Lymphoblastoid cell lines derived from GM19206


title: baseline_yri_GM19193_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19193.

source_name: Lymphoblastoid cell lines derived from GM19193


title: K562 Pool_52

description: single chip, 1 replicate


title: K562 Pool_53

description: single chip, 1 replicate


title: K562 Pool_51

description: single chip, 1 replicate


title: K562 Pool_50

description: single chip, 1 replicate


title: baseline_yri_GM19153_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19153.

source_name: Lymphoblastoid cell lines derived from GM19153


title: K562 Pool_49

description: single chip, 1 replicate


title: baseline_yri_GM19160_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19160.

source_name: Lymphoblastoid cell lines derived from GM19160


title: baseline_yri_GM19159_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19159.

source_name: Lymphoblastoid cell lines derived from GM19159


title: baseline_yri_GM19172_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19172.

source_name: Lymphoblastoid cell lines derived from GM19172


title: baseline_yri_GM19171_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19171.

source_name: Lymphoblastoid cell lines derived from GM19171


title: K562 Pool_48

description: single chip, 1 replicate


title: AG10941

description: AG10941 fibroblast cell line

value: M


title: K562 Pool_54

description: single chip, 1 replicate


title: baseline_yri_GM19144_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19144.

source_name: Lymphoblastoid cell lines derived from GM19144


title: baseline_yri_GM19143_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19143.

source_name: Lymphoblastoid cell lines derived from GM19143


title: baseline_yri_GM19141_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19141.

source_name: Lymphoblastoid cell lines derived from GM19141


title: K562 Pool_47

description: single chip, 1 replicate

source_name: BD SMARTTM RACE cDNA – K562


title: K562 Pool_46

description: single chip, 1 replicate


title: K562 Pool_44

description: single chip, 1 replicate


title: K562 Pool_45

description: single chip, 1 replicate


title: K562 Pool_43

description: single chip, 1 replicate


title: baseline_yri_GM19152_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19152.

source_name: Lymphoblastoid cell lines derived from GM19152


title: baseline_yri_GM19131_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19131.

source_name: Lymphoblastoid cell lines derived from GM19131


title: K562 Pool_42

description: single chip, 1 replicate


title: K562 Pool_40

description: single chip, 1 replicate


title: baseline_yri_GM19140_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19140.

source_name: Lymphoblastoid cell lines derived from GM19140


title: baseline_yri_GM19138_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19138.

source_name: Lymphoblastoid cell lines derived from GM19138


title: baseline_yri_GM19130_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19130.

source_name: Lymphoblastoid cell lines derived from GM19130


title: K562 Pool_38

description: single chip, 1 replicate


title: baseline_yri_GM19137_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19137.

source_name: Lymphoblastoid cell lines derived from GM19137


title: baseline_yri_GM19127_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19127.

source_name: Lymphoblastoid cell lines derived from GM19127


title: baseline_yri_GM19128_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19128.

source_name: Lymphoblastoid cell lines derived from GM19128


title: K562 Pool_37

description: single chip, 1 replicate


title: baseline_yri_GM19119_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19119.

source_name: Lymphoblastoid cell lines derived from GM19119


title: K562 Pool_35

description: single chip, 1 replicate


title: K562 Pool_33

description: single chip, 1 replicate


title: K562 Pool_41

description: single chip, 1 replicate


title: baseline_yri_GM19093_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19093.

source_name: Lymphoblastoid cell lines derived from GM19093


title: K562 Pool_32

description: single chip, 1 replicate


title: baseline_yri_GM19099_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19099.

source_name: Lymphoblastoid cell lines derived from GM19099


title: K562 Pool_34

description: single chip, 1 replicate


title: K562 Pool_29

description: single chip, 1 replicate


title: K562 Pool_36

description: single chip, 1 replicate


title: baseline_yri_GM19116_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19116.

source_name: Lymphoblastoid cell lines derived from GM19116


title: baseline_yri_GM19098_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19098.

source_name: Lymphoblastoid cell lines derived from GM19098


title: baseline_yri_GM19102_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19102.

source_name: Lymphoblastoid cell lines derived from GM19102


title: baseline_yri_GM19101_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19101.

source_name: Lymphoblastoid cell lines derived from GM19101


title: baseline_yri_GM19092_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19092.

source_name: Lymphoblastoid cell lines derived from GM19092


title: K562 Pool_27

description: single chip, 1 replicate

source_name: BD SMARTTM RACE cDNA – K562


title: K562 Pool_31

description: single chip, 1 replicate


title: baseline_yri_GM18912_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18912.

source_name: Lymphoblastoid cell lines derived from GM18912


title: K562 Pool_28

description: single chip, 1 replicate


title: baseline_yri_GM18913_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18913.

source_name: Lymphoblastoid cell lines derived from GM18913


title: K562 Pool_25

description: single chip, 1 replicate


title: baseline_yri_GM18862_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18862.

source_name: Lymphoblastoid cell lines derived from GM18862


title: baseline_yri_GM18870_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18870.

source_name: Lymphoblastoid cell lines derived from GM18870


title: baseline_yri_GM18871_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18871.

source_name: Lymphoblastoid cell lines derived from GM18871


title: K562 Pool_30

description: single chip, 1 replicate


title: baseline_yri_GM18859_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18859.

source_name: Lymphoblastoid cell lines derived from GM18859


title: K562 Pool_39

description: single chip, 1 replicate


title: baseline_yri_GM18861_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18861.

source_name: Lymphoblastoid cell lines derived from GM18861


title: K562 Pool_24

description: single chip, 1 replicate


title: K562 Pool_21

description: single chip, 1 replicate


title: K562 Pool_26

description: single chip, 1 replicate


title: K562 Pool_22

description: single chip, 1 replicate


title: K562 Pool_23

description: single chip, 1 replicate


title: K562 Pool_20

description: single chip, 1 replicate


title: baseline_yri_GM18855_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18855.

source_name: Lymphoblastoid cell lines derived from GM18855


title: baseline_yri_GM18856_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18856.

source_name: Lymphoblastoid cell lines derived from GM18856


title: K562 Pool_19

description: single chip, 1 replicate


title: baseline_yri_GM18523_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18523.

source_name: Lymphoblastoid cell lines derived from GM18523


title: baseline_yri_GM18517_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18517.

source_name: Lymphoblastoid cell lines derived from GM18517


title: baseline_yri_GM18522_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18522.

source_name: Lymphoblastoid cell lines derived from GM18522


title: baseline_yri_GM18852_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18852.

source_name: Lymphoblastoid cell lines derived from GM18852


title: baseline_yri_GM18853_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18853.

source_name: Lymphoblastoid cell lines derived from GM18853


title: K562 Pool_17

description: single chip, 1 replicate


title: K562 Pool_16

description: single chip, 1 replicate


title: K562 Pool_15

description: single chip, 1 replicate


title: baseline_yri_GM18858_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18858.

source_name: Lymphoblastoid cell lines derived from GM18858


title: K562 Pool_13

description: single chip, 1 replicate


title: baseline_yri_GM18516_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18516.

source_name: Lymphoblastoid cell lines derived from GM18516


title: K562 Pool_10

description: single chip, 1 replicate

source_name: BD SMARTTM RACE cDNA – K562


title: K562 Pool_18

description: single chip, 1 replicate


title: baseline_yri_GM18508_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18508.

source_name: Lymphoblastoid cell lines derived from GM18508


title: K562 Pool_11

description: single chip, 1 replicate


title: baseline_yri_GM18505_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18505.

source_name: Lymphoblastoid cell lines derived from GM18505


title: baseline_yri_GM18502_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18502.

source_name: Lymphoblastoid cell lines derived from GM18502


title: baseline_yri_GM18501_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18501.

source_name: Lymphoblastoid cell lines derived from GM18501


title: K562 Pool_6

description: single chip, 1 replicate


title: baseline_asn_GM19007_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19007.

source_name: Lymphoblastoid cell lines derived from GM19007


title: K562 Pool_8

description: single chip, 1 replicate


title: baseline_yri_GM18507_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18507.

source_name: Lymphoblastoid cell lines derived from GM18507


title: K562 Pool_12

description: single chip, 1 replicate


title: baseline_asn_GM19003_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19003.

source_name: Lymphoblastoid cell lines derived from GM19003


title: K562 Pool_5

description: single chip, 1 replicate


title: baseline_asn_GM19005_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19005.

source_name: Lymphoblastoid cell lines derived from GM19005


title: baseline_asn_GM18999_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18999.

source_name: Lymphoblastoid cell lines derived from GM18999


title: baseline_asn_GM19000_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM19000.

source_name: Lymphoblastoid cell lines derived from GM19000


title: K562 Pool_3

description: single chip, 1 replicate


title: baseline_asn_GM18995_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18995.

source_name: Lymphoblastoid cell lines derived from GM18995


title: baseline_asn_GM18994_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18994.

source_name: Lymphoblastoid cell lines derived from GM18994


title: K562 Pool_7

description: single chip, 1 replicate


title: K562 Pool_9

description: single chip, 1 replicate


title: K562 Pool_4

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_102

description: single chip, 1 replicate

source_name: BD Clontech – Fetal Kidney,Spleen,Thymus polyA RNA

value: fetal kidney, fetal spleen, fetal thymus


title: baseline_asn_GM18991_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18991.

source_name: Lymphoblastoid cell lines derived from GM18991


title: baseline_asn_GM18990_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18990.

source_name: Lymphoblastoid cell lines derived from GM18990


title: K562 Pool_1

description: single chip, 1 replicate


title: baseline_asn_GM18992_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18992.

source_name: Lymphoblastoid cell lines derived from GM18992


title: baseline_asn_GM18981_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18981.

source_name: Lymphoblastoid cell lines derived from GM18981


title: Fetal - kidney,spleen,thymus Pool_99

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_98

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_100

description: single chip, 1 replicate


title: baseline_asn_GM18987_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18987.

source_name: Lymphoblastoid cell lines derived from GM18987


title: Fetal - kidney,spleen,thymus Pool_97

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_94

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_95

description: single chip, 1 replicate


title: baseline_asn_GM18978_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18978.

source_name: Lymphoblastoid cell lines derived from GM18978


title: baseline_yri_GM18504_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18504.

source_name: Lymphoblastoid cell lines derived from GM18504


title: baseline_asn_GM18976_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18976.

source_name: Lymphoblastoid cell lines derived from GM18976


title: baseline_asn_GM18973_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18973.

source_name: Lymphoblastoid cell lines derived from GM18973


title: Fetal - kidney,spleen,thymus Pool_101

description: single chip, 1 replicate


title: baseline_asn_GM18975_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18975.

source_name: Lymphoblastoid cell lines derived from GM18975


title: baseline_asn_GM18972_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18972.

source_name: Lymphoblastoid cell lines derived from GM18972


title: Fetal - kidney,spleen,thymus Pool_93

description: single chip, 1 replicate


title: baseline_asn_GM18974_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18974.

source_name: Lymphoblastoid cell lines derived from GM18974


title: K562 Pool_14

description: single chip, 1 replicate

source_name: BD SMARTTM RACE cDNA – K562


title: K562 Pool_81

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_92

description: single chip, 1 replicate


title: baseline_asn_GM18971_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18971.

source_name: Lymphoblastoid cell lines derived from GM18971


title: Fetal - kidney,spleen,thymus Pool_91

description: single chip, 1 replicate


title: baseline_asn_GM18970_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18970.

source_name: Lymphoblastoid cell lines derived from GM18970


title: Fetal - kidney,spleen,thymus Pool_90

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_96

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_88

description: single chip, 1 replicate


title: baseline_asn_GM18969_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18969.

source_name: Lymphoblastoid cell lines derived from GM18969


title: baseline_asn_GM18968_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18968.

source_name: Lymphoblastoid cell lines derived from GM18968


title: Fetal - kidney,spleen,thymus Pool_87

description: single chip, 1 replicate

source_name: BD Clontech – Fetal Kidney,Spleen,Thymus polyA RNA


title: Fetal - kidney,spleen,thymus Pool_85

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_86

description: single chip, 1 replicate


title: baseline_asn_GM18966_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18966.

source_name: Lymphoblastoid cell lines derived from GM18966


title: Fetal - kidney,spleen,thymus Pool_84

description: single chip, 1 replicate


title: baseline_asn_GM18959_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18959.

source_name: Lymphoblastoid cell lines derived from GM18959


title: Fetal - kidney,spleen,thymus Pool_79

description: single chip, 1 replicate


title: baseline_asn_GM18967_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18967.

source_name: Lymphoblastoid cell lines derived from GM18967


title: baseline_asn_GM18965_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18965.

source_name: Lymphoblastoid cell lines derived from GM18965


title: baseline_asn_GM18956_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18956.

source_name: Lymphoblastoid cell lines derived from GM18956


title: Fetal - kidney,spleen,thymus Pool_83

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_82

description: single chip, 1 replicate


title: baseline_asn_GM18961_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18961.

source_name: Lymphoblastoid cell lines derived from GM18961


title: baseline_asn_GM18964_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18964.

source_name: Lymphoblastoid cell lines derived from GM18964


title: baseline_asn_GM18980_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18980.

source_name: Lymphoblastoid cell lines derived from GM18980


title: baseline_asn_GM18948_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18948.

source_name: Lymphoblastoid cell lines derived from GM18948


title: Fetal - kidney,spleen,thymus Pool_81

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_80

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_77

description: single chip, 1 replicate


title: baseline_asn_GM18953_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18953.

source_name: Lymphoblastoid cell lines derived from GM18953


title: baseline_asn_GM18960_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18960.

source_name: Lymphoblastoid cell lines derived from GM18960


title: Fetal - kidney,spleen,thymus Pool_75

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_74

description: single chip, 1 replicate


title: baseline_asn_GM18949_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18949.

source_name: Lymphoblastoid cell lines derived from GM18949


title: Fetal - kidney,spleen,thymus Pool_78

description: single chip, 1 replicate


title: baseline_asn_GM18952_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18952.

source_name: Lymphoblastoid cell lines derived from GM18952


title: Fetal - kidney,spleen,thymus Pool_76

description: single chip, 1 replicate


title: baseline_asn_GM18947_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18947.

source_name: Lymphoblastoid cell lines derived from GM18947


title: Fetal - kidney,spleen,thymus Pool_72

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_70

description: single chip, 1 replicate


title: baseline_asn_GM18944_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18944.

source_name: Lymphoblastoid cell lines derived from GM18944


title: baseline_asn_GM18942_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18942.

source_name: Lymphoblastoid cell lines derived from GM18942


title: baseline_asn_GM18943_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18943.

source_name: Lymphoblastoid cell lines derived from GM18943


title: baseline_asn_GM18940_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18940.

source_name: Lymphoblastoid cell lines derived from GM18940


title: baseline_asn_GM18636_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18636.

source_name: Lymphoblastoid cell lines derived from GM18636


title: baseline_asn_GM18635_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18635.

source_name: Lymphoblastoid cell lines derived from GM18635


title: Fetal - kidney,spleen,thymus Pool_66

description: single chip, 1 replicate

source_name: BD Clontech – Fetal Kidney,Spleen,Thymus polyA RNA


title: Fetal - kidney,spleen,thymus Pool_67

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_71

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_69

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_62

description: single chip, 1 replicate


title: baseline_asn_GM18623_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18623.

source_name: Lymphoblastoid cell lines derived from GM18623


title: Fetal - kidney,spleen,thymus Pool_68

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_64

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_60

description: single chip, 1 replicate


title: baseline_asn_GM18624_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18624.

source_name: Lymphoblastoid cell lines derived from GM18624


title: Fetal - kidney,spleen,thymus Pool_63

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_59

description: single chip, 1 replicate


title: baseline_asn_GM18612_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18612.

source_name: Lymphoblastoid cell lines derived from GM18612


title: baseline_asn_GM18632_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18632.

source_name: Lymphoblastoid cell lines derived from GM18632


title: baseline_asn_GM18620_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18620.

source_name: Lymphoblastoid cell lines derived from GM18620


title: baseline_asn_GM18621_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18621.

source_name: Lymphoblastoid cell lines derived from GM18621


title: Fetal - kidney,spleen,thymus Pool_65

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_58

description: single chip, 1 replicate


title: baseline_asn_GM18611_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18611.

source_name: Lymphoblastoid cell lines derived from GM18611


title: baseline_asn_GM18637_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18637.

source_name: Lymphoblastoid cell lines derived from GM18637


title: baseline_asn_GM18608_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18608.

source_name: Lymphoblastoid cell lines derived from GM18608


title: Fetal - kidney,spleen,thymus Pool_57

description: single chip, 1 replicate


title: baseline_asn_GM18605_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18605.

source_name: Lymphoblastoid cell lines derived from GM18605


title: Fetal - kidney,spleen,thymus Pool_56

description: single chip, 1 replicate


title: baseline_asn_GM18603_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18603.

source_name: Lymphoblastoid cell lines derived from GM18603


title: Fetal - kidney,spleen,thymus Pool_55

description: single chip, 1 replicate


title: baseline_asn_GM18594_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18594.

source_name: Lymphoblastoid cell lines derived from GM18594


title: baseline_asn_GM18582_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18582.

source_name: Lymphoblastoid cell lines derived from GM18582


title: Fetal - kidney,spleen,thymus Pool_54

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_53

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_73

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_52

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_51

description: single chip, 1 replicate


title: baseline_asn_GM18592_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18592.

source_name: Lymphoblastoid cell lines derived from GM18592


title: baseline_asn_GM18593_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18593.

source_name: Lymphoblastoid cell lines derived from GM18593


title: Fetal - kidney,spleen,thymus Pool_89

description: single chip, 1 replicate


title: baseline_asn_GM18576_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18576.

source_name: Lymphoblastoid cell lines derived from GM18576


title: baseline_asn_GM18577_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18577.

source_name: Lymphoblastoid cell lines derived from GM18577


title: baseline_asn_GM18579_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18579.

source_name: Lymphoblastoid cell lines derived from GM18579


title: baseline_asn_GM18573_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18573.

source_name: Lymphoblastoid cell lines derived from GM18573


title: Fetal - kidney,spleen,thymus Pool_46

description: single chip, 1 replicate

source_name: BD Clontech – Fetal Kidney,Spleen,Thymus polyA RNA


title: baseline_asn_GM18622_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18622.

source_name: Lymphoblastoid cell lines derived from GM18622


title: Fetal - kidney,spleen,thymus Pool_50

description: single chip, 1 replicate


title: baseline_asn_GM18570_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18570.

source_name: Lymphoblastoid cell lines derived from GM18570


title: Fetal - kidney,spleen,thymus Pool_49

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_45

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_47

description: single chip, 1 replicate


title: baseline_asn_GM18566_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18566.

source_name: Lymphoblastoid cell lines derived from GM18566


title: Fetal - kidney,spleen,thymus Pool_44

description: single chip, 1 replicate


title: baseline_asn_GM18558_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18558.

source_name: Lymphoblastoid cell lines derived from GM18558


title: baseline_asn_GM18555_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18555.

source_name: Lymphoblastoid cell lines derived from GM18555


title: Fetal - kidney,spleen,thymus Pool_61

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_42

description: single chip, 1 replicate


title: baseline_asn_GM18561_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18561.

source_name: Lymphoblastoid cell lines derived from GM18561


title: baseline_asn_GM18563_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18563.

source_name: Lymphoblastoid cell lines derived from GM18563


title: baseline_asn_GM18564_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18564.

source_name: Lymphoblastoid cell lines derived from GM18564


title: baseline_asn_GM18552_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18552.

source_name: Lymphoblastoid cell lines derived from GM18552


title: Fetal - kidney,spleen,thymus Pool_40

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_48

description: single chip, 1 replicate


title: baseline_asn_GM18562_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18562.

source_name: Lymphoblastoid cell lines derived from GM18562


title: Fetal - kidney,spleen,thymus Pool_41

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_38

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_43

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_39

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_36

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_37

description: single chip, 1 replicate


title: baseline_asn_GM18550_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18550.

source_name: Lymphoblastoid cell lines derived from GM18550


title: Fetal - kidney,spleen,thymus Pool_35

description: single chip, 1 replicate


title: baseline_asn_GM18545_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18545.

source_name: Lymphoblastoid cell lines derived from GM18545


title: baseline_asn_GM18542_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18542.

source_name: Lymphoblastoid cell lines derived from GM18542


title: baseline_asn_GM18547_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18547.

source_name: Lymphoblastoid cell lines derived from GM18547


title: Fetal - kidney,spleen,thymus Pool_34

description: single chip, 1 replicate


title: baseline_asn_GM18537_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18537.

source_name: Lymphoblastoid cell lines derived from GM18537


title: Fetal - kidney,spleen,thymus Pool_33

description: single chip, 1 replicate


title: baseline_asn_GM18540_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18540.

source_name: Lymphoblastoid cell lines derived from GM18540


title: Fetal - kidney,spleen,thymus Pool_31

description: single chip, 1 replicate

source_name: BD Clontech – Fetal Kidney,Spleen,Thymus polyA RNA


title: Fetal - kidney,spleen,thymus Pool_29

description: single chip, 1 replicate


title: baseline_asn_GM18532_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18532.

source_name: Lymphoblastoid cell lines derived from GM18532


title: Fetal - kidney,spleen,thymus Pool_28

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_27

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_30

description: single chip, 1 replicate


title: baseline_asn_GM18524_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18524.

source_name: Lymphoblastoid cell lines derived from GM18524


title: baseline_asn_GM18945_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18945.

source_name: Lymphoblastoid cell lines derived from GM18945


title: Fetal - kidney,spleen,thymus Pool_26

description: single chip, 1 replicate


title: baseline_cephgp_GM13047_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM13047.

source_name: Lymphoblastoid cell lines derived from GM13047


title: baseline_cephgp_GM13133_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM13133.

source_name: Lymphoblastoid cell lines derived from GM13133


title: Fetal - kidney,spleen,thymus Pool_32

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_23

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_24

description: single chip, 1 replicate


title: baseline_cephgp_GM13051_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM13051.

source_name: Lymphoblastoid cell lines derived from GM13051


title: baseline_cephgp_GM13047_rep2


title: Fetal - kidney,spleen,thymus Pool_25

description: single chip, 1 replicate


title: baseline_cephgp_GM13044_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM13044.

source_name: Lymphoblastoid cell lines derived from GM13044


title: baseline_asn_GM18526_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18526.

source_name: Lymphoblastoid cell lines derived from GM18526


title: Fetal - kidney,spleen,thymus Pool_20

description: single chip, 1 replicate


title: baseline_cephgp_GM13042_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM13042.

source_name: Lymphoblastoid cell lines derived from GM13042


title: baseline_cephgp_GM13042_rep1


title: baseline_cephgp_GM13044_rep1


title: Fetal - kidney,spleen,thymus Pool_18

description: single chip, 1 replicate


title: baseline_cephgp_GM12924_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12924.

source_name: Lymphoblastoid cell lines derived from GM12924


title: Fetal - kidney,spleen,thymus Pool_16

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_17

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_21

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_15

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_22

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_19

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_13

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_14

description: single chip, 1 replicate


title: baseline_cephgp_GM12923_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12923.

source_name: Lymphoblastoid cell lines derived from GM12923


title: baseline_cephgp_GM12921_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12921.

source_name: Lymphoblastoid cell lines derived from GM12921


title: baseline_cephgp_GM12924_rep1


title: Fetal - kidney,spleen,thymus Pool_12

description: single chip, 1 replicate


title: baseline_cephgp_GM12922_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12922.

source_name: Lymphoblastoid cell lines derived from GM12922


title: baseline_cephgp_GM12921_rep1


title: baseline_cephgp_GM12910_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12910.

source_name: Lymphoblastoid cell lines derived from GM12910


title: Fetal - kidney,spleen,thymus Pool_9

description: single chip, 1 replicate


title: baseline_cephgp_GM12908_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12908.

source_name: Lymphoblastoid cell lines derived from GM12908


title: Fetal - kidney,spleen,thymus Pool_11

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_10

description: single chip, 1 replicate


title: baseline_cephgp_GM13051_rep1


title: Fetal - kidney,spleen,thymus Pool_7

description: single chip, 1 replicate


title: baseline_cephgp_GM12891_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12891.

source_name: Lymphoblastoid cell lines derived from GM12891


title: Fetal - kidney,spleen,thymus Pool_6

description: single chip, 1 replicate

source_name: BD Clontech – Fetal Kidney,Spleen,Thymus polyA RNA


title: baseline_cephgp_GM12890_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12890.

source_name: Lymphoblastoid cell lines derived from GM12890


title: Fetal - kidney,spleen,thymus Pool_4

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_8

description: single chip, 1 replicate


title: baseline_cephgp_GM12890_rep1

description:
Gene expression data at baseline from lymphoblastoid cells of individual GM12890.

The CEL file for this sample has been irretrievably lost.


title: Fetal - kidney,spleen,thymus Pool_3

description: single chip, 1 replicate


title: baseline_cephgp_GM12909_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12909.

source_name: Lymphoblastoid cell lines derived from GM12909


title: baseline_cephgp_GM12892_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12892.

source_name: Lymphoblastoid cell lines derived from GM12892


title: Fetal - kidney,spleen,thymus Pool_5

description: single chip, 1 replicate


title: baseline_cephgp_GM12889_rep1

description:
Gene expression data at baseline from lymphoblastoid cells of individual GM12889.

The CEL file for this sample has been irretrievably lost.

source_name: Lymphoblastoid cell lines derived from GM12889


title: Fetal - kidney,spleen,thymus Pool_2

description: single chip, 1 replicate


title: Fetal - kidney,spleen,thymus Pool_1

description: single chip, 1 replicate


title: baseline_cephgp_GM12875_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12875.

source_name: Lymphoblastoid cell lines derived from GM12875


title: baseline_cephgp_GM12874_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12874.

source_name: Lymphoblastoid cell lines derived from GM12874


title: baseline_cephgp_GM12874_rep1


title: baseline_cephgp_GM12875_rep1


title: baseline_cephgp_GM12872_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12872.

source_name: Lymphoblastoid cell lines derived from GM12872


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_99

description: single chip, 1 replicate

source_name: BD Clontech – Brain Hippocampus, Frontal Lobe, Hypothalamus polyA RNA

value: frontal lobe, hippocampus, hypothalamus


title: baseline_cephgp_GM12872_rep1


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_98

description: single chip, 1 replicate


title: baseline_cephgp_GM12863_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12863.

source_name: Lymphoblastoid cell lines derived from GM12863


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_97

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_94

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_96

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_95

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_100

description: single chip, 1 replicate


title: baseline_cephgp_GM12861_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12861.

source_name: Lymphoblastoid cell lines derived from GM12861


title: baseline_cephgp_GM12873_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12873.

source_name: Lymphoblastoid cell lines derived from GM12873


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_102

description: single chip, 1 replicate


title: baseline_cephgp_GM12873_rep1


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_101

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_93

description: single chip, 1 replicate


title: baseline_cephgp_GM12843_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12843.

source_name: Lymphoblastoid cell lines derived from GM12843


title: baseline_cephgp_GM12860_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12860.

source_name: Lymphoblastoid cell lines derived from GM12860


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_92

description: single chip, 1 replicate


title: baseline_cephgp_GM12843_rep1


title: baseline_cephgp_GM12842_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12842.

source_name: Lymphoblastoid cell lines derived from GM12842


title: baseline_cephgp_GM12862_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12862.

source_name: Lymphoblastoid cell lines derived from GM12862


title: baseline_cephgp_GM12841_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12841.

source_name: Lymphoblastoid cell lines derived from GM12841


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_87

description: single chip, 1 replicate


title: baseline_cephgp_GM12923_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12923.

source_name: Lymphoblastoid cell lines derived from GM12923


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_88

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_90

description: single chip, 1 replicate


title: baseline_cephgp_GM12840_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12840.

source_name: Lymphoblastoid cell lines derived from GM12840


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_86

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_84

description: single chip, 1 replicate


title: baseline_cephgp_GM12840_rep1


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_91

description: single chip, 1 replicate


title: baseline_cephgp_GM12842_rep1


title: baseline_cephgp_GM12841_rep2


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_85

description: single chip, 1 replicate


title: baseline_cephgp_GM12830_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12830.

source_name: Lymphoblastoid cell lines derived from GM12830


title: baseline_cephgp_GM12830_rep1


title: baseline_cephgp_GM12829_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12829.

source_name: Lymphoblastoid cell lines derived from GM12829


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_83

description: single chip, 1 replicate


title: baseline_cephgp_GM12829_rep1


title: baseline_cephgp_GM12828_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12828.

source_name: Lymphoblastoid cell lines derived from GM12828


title: baseline_cephgp_GM12828_rep2


title: baseline_cephgp_GM12922_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12922.

source_name: Lymphoblastoid cell lines derived from GM12922


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_82

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_80

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_81

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_79

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_78

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_77

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_76

description: single chip, 1 replicate


title: baseline_cephgp_GM12827_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12827.

source_name: Lymphoblastoid cell lines derived from GM12827


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_75

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_74

description: single chip, 1 replicate


title: baseline_cephgp_GM12827_rep1


title: baseline_cephgp_GM12814_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12814.

source_name: Lymphoblastoid cell lines derived from GM12814


title: baseline_cephgp_GM12814_rep1


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_73

description: single chip, 1 replicate

source_name: BD Clontech – Brain Hippocampus, Frontal Lobe, Hypothalamus polyA RNA


title: baseline_cephgp_GM12815_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12815.

source_name: Lymphoblastoid cell lines derived from GM12815


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_71

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_72

description: single chip, 1 replicate


title: baseline_cephgp_GM12813_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12813.

source_name: Lymphoblastoid cell lines derived from GM12813


title: baseline_cephgp_GM12815_rep1


title: baseline_cephgp_GM12812_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12812.

source_name: Lymphoblastoid cell lines derived from GM12812


title: baseline_cephgp_GM12813_rep1


title: baseline_cephgp_GM12778_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12778.

source_name: Lymphoblastoid cell lines derived from GM12778


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_68

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_69

description: single chip, 1 replicate


title: baseline_cephgp_GM12812_rep1


title: baseline_cephgp_GM12777_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12777.

source_name: Lymphoblastoid cell lines derived from GM12777


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_67

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_66

description: single chip, 1 replicate


title: baseline_cephgp_GM12776_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12776.

source_name: Lymphoblastoid cell lines derived from GM12776


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_65

description: single chip, 1 replicate


title: baseline_cephgp_GM12776_rep1


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_63

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_70

description: single chip, 1 replicate


title: baseline_cephgp_GM12763_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12763.

source_name: Lymphoblastoid cell lines derived from GM12763


title: baseline_cephgp_GM12775_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12775.

source_name: Lymphoblastoid cell lines derived from GM12775


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_62

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_61

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_59

description: single chip, 1 replicate


title: baseline_cephgp_GM12762_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12762.

source_name: Lymphoblastoid cell lines derived from GM12762


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_60

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_57

description: single chip, 1 replicate


title: baseline_cephgp_GM12761_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12761.

source_name: Lymphoblastoid cell lines derived from GM12761


title: baseline_cephgp_GM12777_rep2


title: baseline_cephgp_GM12763_rep1


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_58

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_55

description: single chip, 1 replicate


title: baseline_cephgp_GM12761_rep1


title: baseline_cephgp_GM12762_rep2


title: baseline_cephgp_GM12775_rep2


title: baseline_cephgp_GM12760_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12760.

source_name: Lymphoblastoid cell lines derived from GM12760


title: baseline_cephgp_GM12751_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12751.

source_name: Lymphoblastoid cell lines derived from GM12751


title: baseline_cephgp_GM12760_rep1


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_56

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_53

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_50

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_51

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_52

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_54

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_48

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_49

description: single chip, 1 replicate


title: baseline_asn_GM18529_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM18529.

source_name: Lymphoblastoid cell lines derived from GM18529


title: baseline_cephgp_GM12750_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12750.

source_name: Lymphoblastoid cell lines derived from GM12750


title: baseline_cephgp_GM12749_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12749.

source_name: Lymphoblastoid cell lines derived from GM12749


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_47

description: single chip, 1 replicate


title: baseline_cephgp_GM12749_rep1


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_46

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_45

description: single chip, 1 replicate


title: baseline_cephgp_GM12750_rep1


title: baseline_cephgp_GM12748_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12748.

source_name: Lymphoblastoid cell lines derived from GM12748


title: baseline_cephgp_GM12748_rep1


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_44

description: single chip, 1 replicate

source_name: BD Clontech – Brain Hippocampus, Frontal Lobe, Hypothalamus polyA RNA


title: baseline_cephgp_GM12716_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12716.

source_name: Lymphoblastoid cell lines derived from GM12716


title: baseline_cephgp_GM12718_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12718.

source_name: Lymphoblastoid cell lines derived from GM12718


title: baseline_cephgp_GM12717_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12717.

source_name: Lymphoblastoid cell lines derived from GM12717


title: baseline_cephgp_GM12489_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12489.

source_name: Lymphoblastoid cell lines derived from GM12489


title: baseline_cephgp_GM12482_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12482.

source_name: Lymphoblastoid cell lines derived from GM12482


title: ACTH-producing human thymic carcinoids from 5th patient with ectopic ACTH syndrome

city: Bristol

first: Hai

last: Fang

address: Woodland Road

department: Department of Computer Science

country: United Kingdom

institute: University of Bristol

hyb_protocol: Hybridization under the standard protocol as detailed below. Denatured in deionized water at 95°C for 2 minutes, dehydrated in 95% ethanol for 2 minutes at room temperature, and dried using compressed air, microarrays were rehydrated by soaking in prehybridization solution (5x SSC pH 7, 0.1% SDS, 1% fraction V BSA) for 45-90 minutes at 42Â°C, then were washed in deionized water twice for 4-5 seconds each, in isopropanol once for 3 to 4 seconds, and dried by briefly spinning in a centrifuge (Beckman-Coulter TS-5.1-500 rotor at 45 rcf for 2 minutes). Labeled DNA was denatured at 95°C for 3 minutes, cooled on ice, and 20 microliters was applied to each microarray slide.

scan_protocol: Data acquisition was performed by using a laser scanner (Axon Instruments, Union City, CA)

data_processing: Global LOWESS normalized, background subtracted data obtained from log2 of processed Green signal/processed Red signal.

label_protocol: Approximately 30μg RNA was reversely transcribed into cDNA primed with oligo (dT) and labeled with Cy3-dCTP (Green fluorescent dye, G) using Superscript II reverse transcriptase (Life Technologies, Inc., Gaithersburg, MD), while the reference used in all hybridizations was labeled with Cy5-dCTP (Red fluorescent dye, R)

extract_protocol: Total RNA was prepared using TRIzol (Life Technologies, Inc., Gaithersburg, MD), further purified with RNeasy column (Qiagen, Valencia, CA)

value: thymic carcinoids (ACs)

tag: disease state

value: ACTH-producing thymic carcinoids (ACs)

source_name: reference

value: the pool of noncancerous thymuses from 6 independent individuals without ectopic ACTH syndrome (NCs)


title: ACTH-producing human thymic carcinoids from 4th patient with ectopic ACTH syndrome


title: ACTH-producing human thymic carcinoids from 3rd patient with ectopic ACTH syndrome


title: baseline_cephgp_GM12481_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12481.

source_name: Lymphoblastoid cell lines derived from GM12481


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_41

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_43

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_42

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_40

description: single chip, 1 replicate


title: ACTH-producing human thymic carcinoids from 1st patient with ectopic ACTH syndrome


title: Noncancerous thymuses from 5th independent individual without ectopic ACTH syndrome

value: thymus

value: Noncancerous thymus, individual without ectopic ACTH syndrome (NCs)


title: Noncancerous thymuses from 6th independent individual without ectopic ACTH syndrome


title: ACTH-producing human thymic carcinoids from 2nd patient with ectopic ACTH syndrome


title: Noncancerous thymuses from 4th independent individual without ectopic ACTH syndrome


title: baseline_cephgp_GM12465_rep1

description:
Gene expression data at baseline from lymphoblastoid cells of individual GM12465.

The CEL file for this sample has been irretrievably lost.

source_name: Lymphoblastoid cell lines derived from GM12465


title: Noncancerous thymuses from 2nd independent individual without ectopic ACTH syndrome


title: Noncancerous thymuses from 1st independent individual without ectopic ACTH syndrome


title: Noncancerous thymuses from 3rd independent individual without ectopic ACTH syndrome


title: baseline_cephgp_GM12399_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12399.

source_name: Lymphoblastoid cell lines derived from GM12399


title: baseline_cephgp_GM12466_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12466.

source_name: Lymphoblastoid cell lines derived from GM12466


title: baseline_cephgp_GM12400_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12400.

source_name: Lymphoblastoid cell lines derived from GM12400


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_38

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_39

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_37

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_36

description: single chip, 1 replicate


title: baseline_cephgp_GM12398_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12398.

source_name: Lymphoblastoid cell lines derived from GM12398


title: baseline_cephgp_GM12383_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12383.

source_name: Lymphoblastoid cell lines derived from GM12383


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_34

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_35

description: single chip, 1 replicate


title: baseline_cephgp_GM12348_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12348.

source_name: Lymphoblastoid cell lines derived from GM12348


title: baseline_cephgp_GM12347_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12347.

source_name: Lymphoblastoid cell lines derived from GM12347


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_89

description: single chip, 1 replicate


title: siTNIK+7hr Wnt (Experiment 1)

city: London

first: Vivian

last: Li

address: 1 Midland Road

institute: The Francis Crick Institute

description:
Sample 9
293T cells transfected with si-TNIK vs si-control, and induced with Wnt3A medium for 7 hours.

hyb_protocol: The synthesized cRNA was then purified with RNeasy mini kit (Qiagen). 825ng of the corresponding Cy3 and Cy5 cRNA was fragmentated at 60°C for 30 min in the presence of blocking agent and fragmentation buffer (Agilent), then combined with 55ul 2X hybridization buffer (Agilent) and applied to 4X44k human expression microarrays enclosed in Agilent SureHyb-enabled hybridization chambers. After hybridization, slides were washed sequentially.

scan_protocol: Scanned on an Agilent G2505 DNA microarray scanner.

data_processing: Agilent Feature Extraction Software (v 8.5.1.1) was used for background subtraction and LOWESS normalization.

source_name: HEK293T human embryonic kidney cells, Wnt3A, si-TNIK

label_protocol: 2µg of total RNA were primed with 1.2 µl of T7 promoter primer at 65°C for 10 min together with control spike A/B, then reversed transcribed at 40°C for 2hrs in the presence of MMLV RTase (Agilent), and dNTP mix. It was then followed by the cRNA transcription at 40°C for 2hrs in the presence of T7 RNA polymerase, inorganic pyrophosphatase, NTP mix, DTT, PEG and Cy3/Cy5-labeled-CTP.

growth_protocol: HEK293T cells are seeded on 6-well plates and transfected with control/human TNIK 15nM siRNA for 72 hours.

extract_protocol: Total RNA was extracted using RNeasy mini kit (Qiagen) following manufacturer's instructions.

treatment_protocol: Control or Wnt3A conditioned medium was added to the cells and incubated for 4, 7 or 9 hours before RNA extraction.

tag: transfection

value: si-TNIK

tag: induction agent

tag: induction time

value: 7 hours

source_name: HEK293T human embryonic kidney cells, Wnt3A, si-control

value: si-control


title: siTNIK+7hr Wnt (Experiment 2)

description:
Sample 11
Biological replicate of 9. 293T cells transfected with si-TNIK vs si-control, and induced with Wnt3A medium for 7 hours.


title: siTNIK+7hr Wnt (Experiment 1; dye swap)

description:
Sample 10
Dye swap of 9. 293T cells transfected with si-TNIK vs si-control, and induced with Wnt3A medium for 7 hours.


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_33

description: single chip, 1 replicate

source_name: BD Clontech – Brain Hippocampus, Frontal Lobe, Hypothalamus polyA RNA


title: baseline_cephgp_GM12341_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12341.

source_name: Lymphoblastoid cell lines derived from GM12341


title: +9hr Wnt

description:
Sample 5
293T cells transfected with si-control, induced with Wnt3A vs control medium for 9 hours.

value: 9 hours

source_name: HEK293T human embryonic kidney cells, CM, si-control

value: CM


title: siTNIK+4hr Wnt (dye swap)

description:
Sample 8
Dye swap of 7. 293T cells transfected with si-TNIK vs si-control, and induced with Wnt3A medium for 4 hours.

value: 4 hours


title: siTNIK+7hr Wnt (Experiment 2; dye swap)

description:
Sample 12
Dye swap of 11, biological replicate of 10. 293T cells transfected with si-TNIK vs si-control, and induced with Wnt3A medium for 7 hours.


title: baseline_cephgp_GM12342_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12342.

source_name: Lymphoblastoid cell lines derived from GM12342


title: siTNIK+4hr Wnt

description:
Sample 7
293T cells transfected with si-TNIK vs si-control, and induced with Wnt3A medium for 4 hours.


title: +7hr Wnt

description:
Sample 3
293T cells transfected with si-control, induced with Wnt3A vs control medium for 7 hours.


title: +7hr Wnt (dye swap)

description:
Sample 4
Dye swap of 3. 293T cells transfected with si-control, induced with Wnt3A vs control medium for 7 hours.


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_32

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_31

description: single chip, 1 replicate


title: baseline_cephgp_GM12340_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12340.

source_name: Lymphoblastoid cell lines derived from GM12340


title: +4hr Wnt

description:
Sample 1
293T cells transfected with si-control, induced with Wnt3A vs control medium for 4 hours.


title: +9hr Wnt (dye swap)

description:
Sample 6
Dye swap of 5. 293T cells transfected with si-control, induced with Wnt3A vs control medium for 9 hours.


title: +4hr Wnt (dye swap)

description:
Sample 2
Dye swap of 1. 293T cells transfected with si-control, induced with Wnt3A vs control medium for 4 hours.


title: baseline_cephgp_GM12287_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12287.

source_name: Lymphoblastoid cell lines derived from GM12287


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_30

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_29

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_28

description: single chip, 1 replicate


title: baseline_cephgp_GM12287_rep1


title: baseline_cephgp_GM12286_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12286.

source_name: Lymphoblastoid cell lines derived from GM12286


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_26

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_27

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_25

description: single chip, 1 replicate


title: baseline_cephgp_GM12286_rep1


title: Ishikawa_VeryLowDose_BPA_48h_rep4

city: MASON

first: Jay

middle: Patrick

last: Tiesman

state: OH

address: PO BOX 8006

department: Global Biotechnology

institute: Procter & Gamble

description:
Cells known to possess both estrogen and progesterone receptors.
vLow_48h_4

hyb_protocol: Following fragmentation, cRNA was hybridized for 16 hr at 45C on GeneChip Human U133plus2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.

source_name: Ishikawa cell line, BPA, 1pM, 48hr

label_protocol: Purified RNA was converted to cDNA target using SuperScript Choice system (Invitrogen Corp, Carlsbad, CA) and cDNA was converted to biotinylated cRNA probes using the ENZO BioArray transcript labeling kit (ENZO Life Sciences, Farmingdale, NY).

growth_protocol: Ishikawa cells were maintained and grown (to confluency or at a desired cell density between 500,000 - 1 million cells/mL) in DMEM/F-12 Medium (supplemented with 10% Fetal Bovine Serum + 1X penicillin/streptomycin) in xenoestrogen-free Corning plasticware.

extract_protocol: Total RNA was extracted using TRI-Reagent and protocol provided by supplier (Molecular Research Center, Cincinnati, OH).  Extracted RNA was further purified using Qiagen RNEasy columns and protocol provided by supplier (QIAgen, Valencia, CA).  Quadruplicate samples were advanced to target preparation and GeneChip processing.

treatment_protocol: Cells were gently washed in warm PBS and transferred to phenol red-free DMEM/F-12 Medium (supplemented with 10% Charcoal-Stripped Fetal Bovine Serum + 1X penicillin/streptomycin) in Corning Cell Culture Cluster wells overnight and then challenged with 1pM (very low, vL), 100pM (low, L), 10nM (high, H), and 1uM (very high, vH) levels of Bisphenol A.  Prior to collection, cells were washed in warm PBS, resuspended & briefly incubated in TRI-Reagent, & finally collected (in quintuplicate replicates) at each specific time point: 8 hours, 24 hours, and 48 hours.

value: Ishikawa

tag: cell line derivation

value: 39-year-old parous Japanese female diagnosed with endometrial adenocarcinoma stage 2.

tag: treatment

value: bisphenol A

tag: dose

value: 1 pM

tag: treatment time

value: 48 hours


title: baseline_cephgp_GM12283_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12283.

source_name: Lymphoblastoid cell lines derived from GM12283


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_23

description: single chip, 1 replicate

value: frontal lobe, hippocampus, hypothalamus


title: baseline_cephgp_GM12283_rep1


title: baseline_cephgp_GM12282_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12282.

source_name: Lymphoblastoid cell lines derived from GM12282


title: baseline_cephgp_GM12282_rep2


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_24

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_22

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_21

description: single chip, 1 replicate


title: Ishikawa_VeryLowDose_BPA_48h_rep2

description:
Cells known to possess both estrogen and progesterone receptors.
vLow_48h_2


title: baseline_cephgp_GM12275_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12275.

source_name: Lymphoblastoid cell lines derived from GM12275


title: Ishikawa_VeryLowDose_BPA_24h_rep4

description:
Cells known to possess both estrogen and progesterone receptors.
vLow_24h_4

source_name: Ishikawa cell line, BPA, 1pM, 24hr

value: 24 hours


title: baseline_cephgp_GM12275_rep2


title: baseline_cephgp_GM12274_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12274.

source_name: Lymphoblastoid cell lines derived from GM12274


title: Ishikawa_VeryLowDose_BPA_48h_rep1

description:
Cells known to possess both estrogen and progesterone receptors.
vLow_48h_1


title: Ishikawa_VeryLowDose_BPA_24h_rep2

description:
Cells known to possess both estrogen and progesterone receptors.
vLow_24h_2


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_20

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_19

description: single chip, 1 replicate


title: Ishikawa_VeryLowDose_BPA_24h_rep3

description:
Cells known to possess both estrogen and progesterone receptors.
vLow_24h_3


title: Ishikawa_VeryLowDose_BPA_8h_rep4

description:
Cells known to possess both estrogen and progesterone receptors.
vLow_8h_4

source_name: Ishikawa cell line, BPA, 1pM, 8hr

value: 8 hours


title: baseline_cephgp_GM12274_rep1


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_18

description: single chip, 1 replicate


title: baseline_cephgp_GM12273_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12273.

source_name: Lymphoblastoid cell lines derived from GM12273


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_17

description: single chip, 1 replicate


title: baseline_cephgp_GM12272_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12272.

source_name: Lymphoblastoid cell lines derived from GM12272


title: baseline_cephgp_GM12273_rep1


title: Ishikawa_VeryLowDose_BPA_8h_rep3

description:
Cells known to possess both estrogen and progesterone receptors.
vLow_8h_3


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_15

description: single chip, 1 replicate


title: baseline_cephgp_GM12272_rep1


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_64

description: single chip, 1 replicate


title: Ishikawa_VeryHighDose_BPA_48h_rep4

description:
Cells known to possess both estrogen and progesterone receptors.
vHigh_48h_4

source_name: Ishikawa cell line, BPA, 1uM, 48hr

value: 1 uM


title: Ishikawa_VeryHighDose_BPA_48h_rep3

description:
Cells known to possess both estrogen and progesterone receptors.
vHigh_48h_3


title: Ishikawa_VeryLowDose_BPA_24h_rep1

description:
Cells known to possess both estrogen and progesterone receptors.
vLow_24h_1


title: baseline_cephgp_GM12751_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12751.

source_name: Lymphoblastoid cell lines derived from GM12751


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_14

description: single chip, 1 replicate

source_name: BD Clontech – Brain Hippocampus, Frontal Lobe, Hypothalamus polyA RNA


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_13

description: single chip, 1 replicate


title: Ishikawa_VeryLowDose_BPA_8h_rep1

description:
Cells known to possess both estrogen and progesterone receptors.
vLow_8h_1


title: baseline_cephgp_GM12264_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12264.

source_name: Lymphoblastoid cell lines derived from GM12264


title: Ishikawa_VeryLowDose_BPA_8h_rep2

description:
Cells known to possess both estrogen and progesterone receptors.
vLow_8h_2


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_11

description: single chip, 1 replicate


title: Chd1 IP from mouse ES cells

type: genomic

description: ChIP-chip (Chd1) of cultured E14 mouse ES cells.

hyb_protocol: Hybridization done according to manufacturer's protocol.

scan_protocol: Scanning was performed with manufacturer's protocol.

data_processing: Data analysis was performed using the Agilent Chip-Analytics software v1.3

molecule: genomic DNA

source_name: Mouse ES cells, Chd1 IP

label_protocol: Labeling done according to manufacturer's protocol.

extract_protocol: Genomic DNA was isolated using standard procedures and an IP was performed for Chd1.

source_name: Mouse ES cells, no IP

extract_protocol: Genomic DNA was isolated using standard procedures and no IP was performed.


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_16

description: single chip, 1 replicate


title: baseline_cephgp_GM12251_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12251.

source_name: Lymphoblastoid cell lines derived from GM12251


title: baseline_cephgp_GM12251_rep1


title: baseline_cephgp_GM12250_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12250.

source_name: Lymphoblastoid cell lines derived from GM12250


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_10

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_12

description: single chip, 1 replicate


title: Ishikawa_VeryHighDose_BPA_48h_rep2

description:
Cells known to possess both estrogen and progesterone receptors.
vHigh_48h_2


title: baseline_cephgp_GM12250_rep1


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_9

description: single chip, 1 replicate


title: Ishikawa_VeryHighDose_BPA_24h_rep3

description:
Cells known to possess both estrogen and progesterone receptors.
vHigh_24h_3

source_name: Ishikawa cell line, BPA, 1uM, 24hr


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_8

description: single chip, 1 replicate


title: baseline_cephgp_GM12249_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12249.

source_name: Lymphoblastoid cell lines derived from GM12249


title: Ishikawa_VeryHighDose_BPA_24h_rep4

description:
Cells known to possess both estrogen and progesterone receptors.
vHigh_24h_4


title: baseline_cephgp_GM12249_rep1


title: Ishikawa_VeryHighDose_BPA_48h_rep1

description:
Cells known to possess both estrogen and progesterone receptors.
vHigh_48h_1


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_7

description: single chip, 1 replicate


title: Ishikawa_VeryHighDose_BPA_24h_rep2

description:
Cells known to possess both estrogen and progesterone receptors.
vHigh_24h_2


title: Ishikawa_VeryHighDose_BPA_24h_rep1

description:
Cells known to possess both estrogen and progesterone receptors.
vHigh_24h_1


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_5

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_6

description: single chip, 1 replicate


title: baseline_cephgp_GM12239_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12239.

source_name: Lymphoblastoid cell lines derived from GM12239


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_4

description: single chip, 1 replicate


title: baseline_cephgp_GM12248_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12248.

source_name: Lymphoblastoid cell lines derived from GM12248


title: baseline_cephgp_GM12248_rep2


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_2

description: single chip, 1 replicate


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_1

description: single chip, 1 replicate


title: Ishikawa_VeryHighDose_BPA_8h_rep3

description:
Cells known to possess both estrogen and progesterone receptors.
vHigh_8h_3

source_name: Ishikawa cell line, BPA, 1uM, 8hr


title: baseline_cephgp_GM12239_rep2


title: baseline_cephgp_GM12236_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12236.

source_name: Lymphoblastoid cell lines derived from GM12236


title: Ishikawa_LowDose_BPA_48h_rep3

description:
Cells known to possess both estrogen and progesterone receptors.
Low_48h_3

source_name: Ishikawa cell line, BPA, 100pM, 48hr


title: baseline_cephgp_GM12156_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12156.

source_name: Lymphoblastoid cell lines derived from GM12156


title: Ishikawa_VeryHighDose_BPA_8h_rep2

description:
Cells known to possess both estrogen and progesterone receptors.
vHigh_8h_2


title: Ishikawa_VeryHighDose_BPA_8h_rep1

description:
Cells known to possess both estrogen and progesterone receptors.
vHigh_8h_1


title: baseline_cephgp_GM12156_rep1


title: Ishikawa_LowDose_BPA_48h_rep4

description:
Cells known to possess both estrogen and progesterone receptors.
Low_48h_4


title: baseline_cephgp_GM12236_rep2


title: Ishikawa_LowDose_BPA_48h_rep1

description:
Cells known to possess both estrogen and progesterone receptors.
Low_48h_1


title: Ishikawa_LowDose_BPA_48h_rep2

description:
Cells known to possess both estrogen and progesterone receptors.
Low_48h_2


title: Ishikawa_LowDose_BPA_24h_rep4

description:
Cells known to possess both estrogen and progesterone receptors.
Low_24h_4

source_name: Ishikawa cell line, BPA, 100pM, 24hr


title: Ishikawa_LowDose_BPA_24h_rep3

description:
Cells known to possess both estrogen and progesterone receptors.
Low_24h_3


title: Ishikawa_VeryHighDose_BPA_8h_rep4

description:
Cells known to possess both estrogen and progesterone receptors.
vHigh_8h_4


title: Brain Cerebellum Pool_100

description: single chip, 1 replicate

source_name: BD Clontech – Brain Cerebellum polyA RNA

value: cerebellum


title: baseline_cephgp_GM12234_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12234.

source_name: Lymphoblastoid cell lines derived from GM12234


title: Brain Cerebellum Pool_99

description: single chip, 1 replicate


title: Brain Cerebellum Pool_102

description: single chip, 1 replicate


title: Brain Cerebellum Pool_98

description: single chip, 1 replicate


title: baseline_cephgp_GM12154_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12154.

source_name: Lymphoblastoid cell lines derived from GM12154


title: Brain Hippocampus, Frontal Lobe, Hypothalamus Pool_3

description: single chip, 1 replicate

source_name: BD Clontech – Brain Hippocampus, Frontal Lobe, Hypothalamus polyA RNA


title: Brain Cerebellum Pool_101

description: single chip, 1 replicate


title: SNP500K_073_Nsp

status: Public on Aug 20 2009

city: Saint Herblain

first: Wilfried

last: Gouraud

address: bd Jacques Monod

department: Integrated Center of Oncology René Gauducheau

country: France

institute: ICO (Integrated Center of Oncology Nantes)

description: Newly diagnosed patients

hyb_protocol: Following fragmentation, 90 ug of genomic DNA were hybridized for 16 hr at 49C on either the GeneChip® Mapping NspI or StyI chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: Arrays were scanned using the GeneChip Scanner 3000 7G.

data_processing: Affymetrix GCOS, then dChip software (Cheng Li)

source_name: Bone marrow

label_protocol: Biotinylated genomic DNA were prepared according to the standard Affymetrix protocol from 90 ug PCR product (GeneChip® Mapping 500K Assay Manual, 2005, Affymetrix).

extract_protocol:
Mononuclear bone marrow cells were separated using gradient density centrifugation (lymphocyte separation medium, Eurobio, Les Ulis, France), and plasmacytosis was evaluated by morphology in these mononuclear cell suspensions. Plasma cells (PCs) were then positively selected using anti-CD138–coated microbeads (Miltenyi, Paris, France), because CD138 is expressed only on PCs (normal and malignant) within the bone marrow. Purity and viability of the positively selected cell suspension was assessed by morphology and was above 90% in all the cases.
DNA was extracted using the DNA AllPrep DNA/RNA MiniKit (Qiagen, Valencia, CA).
DNA quality and quantity were assessed using the Nanodrop Spectrophotometer (NanoDrop Technologies, Inc. Wilmington, DE).

tag: Tumor

value: multiple myeloma. Tissue:bone marrow. Cells:purified CD138+ plasma cells.


title: Brain Cerebellum Pool_97

description: single chip, 1 replicate


title: Ishikawa_LowDose_BPA_24h_rep1

description:
Cells known to possess both estrogen and progesterone receptors.
Low_24h_1


title: Brain Cerebellum Pool_96

description: single chip, 1 replicate


title: Brain Cerebellum Pool_95

description: single chip, 1 replicate


title: baseline_cephgp_GM12146_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12146.

source_name: Lymphoblastoid cell lines derived from GM12146


title: baseline_cephgp_GM12155_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12155.

source_name: Lymphoblastoid cell lines derived from GM12155


title: Brain Cerebellum Pool_94

description: single chip, 1 replicate


title: baseline_cephgp_GM12145_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12145.

source_name: Lymphoblastoid cell lines derived from GM12145


title: baseline_cephgp_GM12154_rep1


title: Ishikawa_LowDose_BPA_8h_rep4

description:
Cells known to possess both estrogen and progesterone receptors.
Low_8h_4

source_name: Ishikawa cell line, BPA, 100pM, 8hr


title: baseline_cephgp_GM12144_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12144.

source_name: Lymphoblastoid cell lines derived from GM12144


title: baseline_cephgp_GM12146_rep1


title: Ishikawa_LowDose_BPA_8h_rep1

description:
Cells known to possess both estrogen and progesterone receptors.
Low_8h_1


title: Ishikawa_LowDose_BPA_8h_rep2

description:
Cells known to possess both estrogen and progesterone receptors.
Low_8h_2


title: Ishikawa_LowDose_BPA_8h_rep3

description:
Cells known to possess both estrogen and progesterone receptors.
Low_8h_3


title: baseline_cephgp_GM12144_rep2


title: Ishikawa_LowDose_BPA_24h_rep2

description:
Cells known to possess both estrogen and progesterone receptors.
Low_24h_2


title: Ishikawa_HighDose_BPA_48h_rep4

description:
Cells known to possess both estrogen and progesterone receptors.
High_48h_4

source_name: Ishikawa cell line, BPA, 10nM, 48hr

value: 10 nM


title: Ishikawa_HighDose_BPA_48h_rep3

description:
Cells known to possess both estrogen and progesterone receptors.
High_48h_3


title: Brain Cerebellum Pool_92

description: single chip, 1 replicate


title: Brain Cerebellum Pool_91

description: single chip, 1 replicate


title: Ishikawa_HighDose_BPA_48h_rep2

description:
Cells known to possess both estrogen and progesterone receptors.
High_48h_2


title: baseline_cephgp_GM12117_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12117.

source_name: Lymphoblastoid cell lines derived from GM12117


title: Brain Cerebellum Pool_89

description: single chip, 1 replicate


title: Brain Cerebellum Pool_93

description: single chip, 1 replicate


title: baseline_cephgp_GM12145_rep1


title: baseline_cephgp_GM12116_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12116.

source_name: Lymphoblastoid cell lines derived from GM12116


title: Brain Cerebellum Pool_88

description: single chip, 1 replicate


title: Brain Cerebellum Pool_86

description: single chip, 1 replicate


title: Brain Cerebellum Pool_87

description: single chip, 1 replicate


title: Brain Cerebellum Pool_85

description: single chip, 1 replicate


title: baseline_cephgp_GM12058_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12058.

source_name: Lymphoblastoid cell lines derived from GM12058


title: baseline_cephgp_GM12097_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12097.

source_name: Lymphoblastoid cell lines derived from GM12097


title: baseline_cephgp_GM12096_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12096.

source_name: Lymphoblastoid cell lines derived from GM12096


title: Brain Cerebellum Pool_90

description: single chip, 1 replicate


title: Ishikawa_HighDose_BPA_24h_rep4

description:
Cells known to possess both estrogen and progesterone receptors.
High_24h_4

source_name: Ishikawa cell line, BPA, 10nM, 24hr


title: baseline_cephgp_GM12099_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12099.

source_name: Lymphoblastoid cell lines derived from GM12099


title: Brain Cerebellum Pool_84

description: single chip, 1 replicate

source_name: BD Clontech – Brain Cerebellum polyA RNA


title: Ishikawa_VeryLowDose_BPA_48h_rep3

description:
Cells known to possess both estrogen and progesterone receptors.
vLow_48h_3

source_name: Ishikawa cell line, BPA, 1pM, 48hr


title: baseline_cephgp_GM12057_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12057.

source_name: Lymphoblastoid cell lines derived from GM12057


title: Ishikawa_HighDose_BPA_48h_rep1

description:
Cells known to possess both estrogen and progesterone receptors.
High_48h_1


title: baseline_cephgp_GM12046_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12046.

source_name: Lymphoblastoid cell lines derived from GM12046


title: Brain Cerebellum Pool_83

description: single chip, 1 replicate


title: Ishikawa_HighDose_BPA_24h_rep3

description:
Cells known to possess both estrogen and progesterone receptors.
High_24h_3


title: Ishikawa_HighDose_BPA_24h_rep2

description:
Cells known to possess both estrogen and progesterone receptors.
High_24h_2


title: Ishikawa_HighDose_BPA_24h_rep1

description:
Cells known to possess both estrogen and progesterone receptors.
High_24h_1


title: Brain Cerebellum Pool_80

description: single chip, 1 replicate


title: Brain Cerebellum Pool_82

description: single chip, 1 replicate


title: Brain Cerebellum Pool_81

description: single chip, 1 replicate


title: baseline_cephgp_GM12045_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12045.

source_name: Lymphoblastoid cell lines derived from GM12045


title: baseline_cephgp_GM12056_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12056.

source_name: Lymphoblastoid cell lines derived from GM12056


title: Brain Cerebellum Pool_79

description: single chip, 1 replicate


title: baseline_cephgp_GM12046_rep1


title: Ishikawa_HighDose_BPA_8h_rep3

description:
Cells known to possess both estrogen and progesterone receptors.
High_8h_3

source_name: Ishikawa cell line, BPA, 10nM, 8hr


title: Ishikawa_HighDose_BPA_8h_rep2

description:
Cells known to possess both estrogen and progesterone receptors.
High_8h_2


title: Ishikawa_HighDose_BPA_8h_rep1

description:
Cells known to possess both estrogen and progesterone receptors.
High_8h_1


title: Ishikawa_Control_48h_rep4

description:
Cells known to possess both estrogen and progesterone receptors.
Ctrl_48h_4

source_name: Ishikawa cell line, control, 48hr

value: vehicle control


title: Ishikawa_HighDose_BPA_8h_rep4

description:
Cells known to possess both estrogen and progesterone receptors.
High_8h_4


title: Brain Cerebellum Pool_78

description: single chip, 1 replicate


title: Brain Cerebellum Pool_77

description: single chip, 1 replicate


title: Brain Cerebellum Pool_76

description: single chip, 1 replicate


title: Ishikawa_Control_48h_rep2

description:
Cells known to possess both estrogen and progesterone receptors.
Ctrl_48h_2


title: Brain Cerebellum Pool_74

description: single chip, 1 replicate


title: baseline_cephgp_GM12044_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12044.

source_name: Lymphoblastoid cell lines derived from GM12044


title: baseline_cephgp_GM12045_rep1


title: Brain Cerebellum Pool_75

description: single chip, 1 replicate


title: Brain Cerebellum Pool_73

description: single chip, 1 replicate


title: baseline_cephgp_GM12044_rep2


title: baseline_cephgp_GM12043_rep2

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12043.

source_name: Lymphoblastoid cell lines derived from GM12043


title: Ishikawa_Control_48h_rep1

description:
Cells known to possess both estrogen and progesterone receptors.
Ctrl_48h_1


title: baseline_cephgp_GM12004_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12004.

source_name: Lymphoblastoid cell lines derived from GM12004


title: baseline_cephgp_GM12003_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12003.

source_name: Lymphoblastoid cell lines derived from GM12003


title: Ishikawa_Control_24h_rep4

description:
Cells known to possess both estrogen and progesterone receptors.
Ctrl_24h_4

source_name: Ishikawa cell line, control, 24hr


title: baseline_cephgp_GM12006_rep1

description: Gene expression data at baseline from lymphoblastoid cells of individual GM12006.

source_name: Lymphoblastoid cell lines derived from GM12006


title: baseline_cephgp_GM12043_rep1


title: Ishikawa_Control_24h_rep2

description:
Cells known to possess both estrogen and progesterone receptors.
Ctrl_24h_2