title: PF403-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56795.gif
Compound Based Treatment: Artekin
Disease State: Malaria (P. falciparum)

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1720, 6280; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.47; Parameter Scan Time = 11:37:06; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101828; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.28; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.47; Parameter Scan Time = 11:37:06; Parameter PMT Volts = 820; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101765; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.09; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: PF403-T1_4ug aRNA

tag: PF403-T1_4ug aRNA


title: Germline misc-#9, Sty2 SNP array

status: Public on Jan 04 2010

type: genomic

city: Memphis

first: Jeffery

last: Klco

state: TN

address: 262 Danny Thomas Place

department: Pathology

country: USA

institute: St Jude Children's Research Hospital

hyb_protocol: As per manufacturer (Affymetrix).

scan_protocol: As per manufacturer (Affymetrix).

data_processing: CEL files and CHP files (generated by Dynamic Model 3.0)   were processed by dChip and model-based expression performed using the PM-only model. Normalization was performed using the reference normalization algorithm developed at St Jude and described in Mullighan et al Nature 2007;446:758. The data matrix contains the normalized expression values produced by that algorithm.

label: Biotin

molecule: genomic DNA

organism: Homo sapiens

source_name: Germline misc-#9

label_protocol: As per manufacturer (Affymetrix).

growth_protocol: Cryopreserved peripheral blood or bone marrow samples obtained at diagnosis or remission.

extract_protocol: Qiagen DNA blood mini or phenol chloroform.

tag: tissue

value: acute myeloid leukemia


title: Diagnostic_acute_leukemia misc-#9, Nsp SNP array

data_processing: CEL files and CHP files (generated by Dynamic Model 3.0)  were processed by dChip and model-based expression performed using the PM-only model. Normalization was performed using the reference normalization algorithm developed at St Jude and described in Mullighan et al Nature 2007;446:758. The data matrix contains the normalized expression values produced by that algorithm.

source_name: Diagnostic_acute_leukemia misc-#9


title: ST168-T1

type: RNA

city: Stanford

first: Lucinda

last: Thompson

state: CA

address: Fairchild Bldg., D035, 299 Campus Dr

department: Microbiology and Immunology, School of Medicine

institute: Stanford University

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56806.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

hyb_protocol: not provided

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1760, 5680; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.31; Parameter Scan Time = 11:23:30; Parameter PMT Volts = 580; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102444; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.34; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.31; Parameter Scan Time = 11:23:30; Parameter PMT Volts = 640; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102380; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.03; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

data_processing: VALUE is Log (base 2) of the ratio of the median of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

molecule: total RNA

source_name: Strat. REF Human aRNA 4ug

label_protocol: not provided

extract_protocol: not provided

tag: Strat. REF Human aRNA 4ug

tag: LabeledExtract

source_name: ST168-T1_4ug aRNA

tag: ST168-T1_4ug aRNA


title: Diagnostic_acute_leukemia M7-#3, Xba SNP array

data_processing: CEL files and CHP files (generated by Dynamic Model 3.0) were processed by dChip and model-based expression performed using the PM-only model. Normalization was performed using the reference normalization algorithm developed at St Jude and described in Mullighan et al Nature 2007;446:758. The data matrix contains the normalized expression values produced by that algorithm.

source_name: Diagnostic_acute_leukemia M7-#3


title: PF400-T28

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56794.gif
Compound Based Treatment: Artekin
Disease State: Malaria (P. falciparum)

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1760, 6480; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.96; Parameter Scan Time = 14:30:40; Parameter PMT Volts = 540; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102001; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.42; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.96; Parameter Scan Time = 14:30:40; Parameter PMT Volts = 780; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101938; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.17; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: PF400-T28_4ug aRNA

tag: PF400-T28_4ug aRNA


title: Germline M7-#3, Xba SNP array

source_name: Germline M7-#3


title: Germline misc-#8, Nsp SNP array

source_name: Germline misc-#8


title: Germline misc-#8, Sty2 SNP array


title: Germline M7-#2, Xba SNP array

source_name: Germline M7-#2


title: Diagnostic_acute_leukemia misc-#12, Nsp SNP array

source_name: Diagnostic_acute_leukemia misc-#12


title: Diagnostic_acute_leukemia M7-#2, Xba SNP array

source_name: Diagnostic_acute_leukemia M7-#2


title: Germline misc-#6, Nsp SNP array

source_name: Germline misc-#6


title: Diagnostic_acute_leukemia misc-#8, Nsp SNP array

source_name: Diagnostic_acute_leukemia misc-#8


title: Diagnostic_acute_leukemia misc-#10, Sty2 SNP array

source_name: Diagnostic_acute_leukemia misc-#10


title: Germline misc-#7, Sty2 SNP array

source_name: Germline misc-#7


title: Germline M7-#1, Xba SNP array

source_name: Germline M7-#1


title: Diagnostic_acute_leukemia misc-#9, Sty2 SNP array


title: Diagnostic_acute_leukemia misc-#6, Nsp SNP array

source_name: Diagnostic_acute_leukemia misc-#6


title: Germline misc-#7, Nsp SNP array


title: Diagnostic_acute_leukemia misc-#8, Sty2 SNP array


title: Diagnostic_acute_leukemia misc-#7, Nsp SNP array

source_name: Diagnostic_acute_leukemia misc-#7


title: Germline misc-#5, Nsp SNP array

source_name: Germline misc-#5


title: HC9

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56792.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1400, 5680; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.96; Parameter Scan Time = 16:42:44; Parameter PMT Volts = 540; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102133; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.42; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.96; Parameter Scan Time = 16:42:44; Parameter PMT Volts = 730; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102070; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.23; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: Strat. REF Human aRNA 4ug

source_name: HC9_4ug aRNA

tag: HC9_4ug aRNA


title: PF400-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56793.gif
Compound Based Treatment: Artekin
Disease State: Malaria (P. falciparum)

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1360, 5040; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.16; Parameter Scan Time = 15:35:46; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102066; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.42; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.16; Parameter Scan Time = 15:35:46; Parameter PMT Volts = 780; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102003; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.22; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: PF400-T1_4ug aRNA

tag: PF400-T1_4ug aRNA


title: Diagnostic_acute_leukemia M7-#1, Xba SNP array

source_name: Diagnostic_acute_leukemia M7-#1


title: Germline MLL-#17, Xba SNP array

source_name: Germline MLL-#17


title: PF405-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56865.gif
Compound Based Treatment: Artekin
Disease State: Malaria (P. falciparum)

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1720, 6880; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.60; Parameter Scan Time = 12:58:25; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101909; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.37; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.60; Parameter Scan Time = 12:58:25; Parameter PMT Volts = 640; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101845; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.10; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: PF405-T1_4ug aRNA

tag: PF405-T1_4ug aRNA


title: ST177-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56864.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1560, 6320; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.60; Parameter Scan Time = 14:43:50; Parameter PMT Volts = 530; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102014; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.40; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.60; Parameter Scan Time = 14:43:50; Parameter PMT Volts = 830; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101950; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.17; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST177-T1_4ug aRNA

tag: ST177-T1_4ug aRNA


title: Germline misc-#6, Sty2 SNP array


title: Diagnostic_acute_leukemia misc-#7, Sty2 SNP array


title: HC8

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56791.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1400, 5480; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.69; Parameter Scan Time = 10:29:11; Parameter PMT Volts = 640; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101760; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.22; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.69; Parameter Scan Time = 10:29:11; Parameter PMT Volts = 650; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101697; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.98; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: HC8_4ug aRNA

tag: HC8_4ug aRNA


title: Diagnostic_acute_leukemia MLL-#16, Xba SNP array

source_name: Diagnostic_acute_leukemia MLL-#16


title: Germline misc-#5, Sty2 SNP array


title: Diagnostic_acute_leukemia misc-#5, Nsp SNP array

source_name: Diagnostic_acute_leukemia misc-#5


title: HC7

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56790.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1320, 5520; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.96; Parameter Scan Time = 13:38:39; Parameter PMT Volts = 530; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101949; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.42; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.96; Parameter Scan Time = 13:38:39; Parameter PMT Volts = 820; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101885; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.15; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: HC7_4ug aRNA

tag: HC7_4ug aRNA


title: Diagnostic_acute_leukemia MLL-#17, Xba SNP array

source_name: Diagnostic_acute_leukemia MLL-#17


title: Germline misc-#4, Nsp SNP array

source_name: Germline misc-#4


title: Diagnostic_acute_leukemia MLL-#15, Xba SNP array

source_name: Diagnostic_acute_leukemia MLL-#15


title: ST181-T3

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56645.gif
Compound Based Treatment: Azithromycin
Disease State: Paratyphoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 720, 6000; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.13; Parameter Scan Time = 11:41:59; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101010; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.25; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.13; Parameter Scan Time = 11:41:59; Parameter PMT Volts = 730; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 100946; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.05; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST181-T3_4ug aRNA

tag: ST181-T3_4ug aRNA


title: ST183-T9

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56646.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 680, 5280; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.25; Parameter Scan Time = 09:38:21; Parameter PMT Volts = 480; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 100886; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.22; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.25; Parameter Scan Time = 09:38:21; Parameter PMT Volts = 720; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 100822; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.93; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST183-T9_4ug aRNA

tag: ST183-T9_4ug aRNA


title: Diagnostic_acute_leukemia MLL-#14, Xba SNP array

source_name: Diagnostic_acute_leukemia MLL-#14


title: Diagnostic_acute_leukemia misc-#3, Nsp SNP array

source_name: Diagnostic_acute_leukemia misc-#3


title: ST177-T9

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56644.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1440, 5760; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.72; Parameter Scan Time = 13:04:04; Parameter PMT Volts = 530; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101091; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.30; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.72; Parameter Scan Time = 13:04:04; Parameter PMT Volts = 720; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101028; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.13; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: Strat. REF Human aRNA 4ug

source_name: ST177-T9_4ug aRNA

tag: ST177-T9_4ug aRNA


title: Diagnostic_acute_leukemia misc-#4, Nsp SNP array

source_name: Diagnostic_acute_leukemia misc-#4


title: Diagnostic_acute_leukemia misc-#6, Sty2 SNP array

source_name: Diagnostic_acute_leukemia misc-#6


title: Germline misc-#2, Nsp SNP array

source_name: Germline misc-#2


title: Diagnostic_acute_leukemia misc-#4, Sty2 SNP array


title: Germline misc-#4, Sty2 SNP array


title: Diagnostic_acute_leukemia MLL-#12, Xba SNP array

source_name: Diagnostic_acute_leukemia MLL-#12


title: ST175-T9

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56642.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1400, 5240; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 35.18; Parameter Scan Time = 14:41:55; Parameter PMT Volts = 490; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101190; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.31; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 35.18; Parameter Scan Time = 14:41:55; Parameter PMT Volts = 820; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101126; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.16; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST175-T9_4ug aRNA

tag: ST175-T9_4ug aRNA


title: Diagnostic_acute_leukemia MLL-#13, Xba SNP array

source_name: Diagnostic_acute_leukemia MLL-#13


title: ST176-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56643.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1320, 4920; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.88; Parameter Scan Time = 12:50:24; Parameter PMT Volts = 500; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101078; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.37; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.88; Parameter Scan Time = 12:50:24; Parameter PMT Volts = 730; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101014; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.10; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST176-T1_4ug aRNA

tag: ST176-T1_4ug aRNA


title: Diagnostic_acute_leukemia misc-#5, Sty2 SNP array

source_name: Diagnostic_acute_leukemia misc-#5


title: Diagnostic_acute_leukemia misc-#3, Sty2 SNP array


title: Diagnostic_acute_leukemia misc-#2, Sty2 SNP array

source_name: Diagnostic_acute_leukemia misc-#2


title: Diagnostic_acute_leukemia misc-#2, Nsp SNP array


title: ST172-T28

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56640.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 680, 6080; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.54; Parameter Scan Time = 17:33:26; Parameter PMT Volts = 500; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101360; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.42; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.54; Parameter Scan Time = 17:33:26; Parameter PMT Volts = 780; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101297; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.22; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST172-T28_4ug aRNA

tag: ST172-T28_4ug aRNA


title: Diagnostic_acute_leukemia MLL-#10, Xba SNP array

source_name: Diagnostic_acute_leukemia MLL-#10

tag: tissue


title: Germline MLL-#11, Xba SNP array

source_name: Germline MLL-#11


title: Diagnostic_acute_leukemia misc-#1, Nsp SNP array

source_name: Diagnostic_acute_leukemia misc-#1


title: Diagnostic_acute_leukemia M7-#9, Nsp SNP array

source_name: Diagnostic_acute_leukemia M7-#9


title: ST174-T3

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56641.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 760, 6400; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 37.16; Parameter Scan Time = 16:17:03; Parameter PMT Volts = 500; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101285; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.35; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 37.16; Parameter Scan Time = 16:17:03; Parameter PMT Volts = 740; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101221; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.19; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

tag: Strat. REF Human aRNA 4ug

source_name: ST174-T3_4ug aRNA

tag: ST174-T3_4ug aRNA


title: Germline misc-#1, Nsp SNP array

source_name: Germline misc-#1


title: Germline misc-#2, Sty2 SNP array


title: Diagnostic_acute_leukemia MLL-#9, Xba SNP array

source_name: Diagnostic_acute_leukemia MLL-#9


title: Diagnostic_acute_leukemia misc-#1, Sty2 SNP array


title: Diagnostic_acute_leukemia MLL-#11, Xba SNP array

source_name: Diagnostic_acute_leukemia MLL-#11


title: Germline misc-#1, Sty2 SNP array


title: HC1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56788.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1520, 6480; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.99; Parameter Scan Time = 10:15:59; Parameter PMT Volts = 550; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101747; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.20; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 32.99; Parameter Scan Time = 10:15:59; Parameter PMT Volts = 640; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101683; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.97; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: Strat. REF Human aRNA 4ug

tag: LabeledExtract

source_name: HC1_4ug aRNA

tag: HC1_4ug aRNA


title: Germline M7-#7, Nsp SNP array

scan_protocol: As per manufacturer (Affymetrix).

source_name: Germline M7-#7


title: Diagnostic_acute_leukemia M7-#8, Nsp SNP array

source_name: Diagnostic_acute_leukemia M7-#8


title: Diagnostic_acute_leukemia M7-#9, Sty2 SNP array


title: Diagnostic_acute_leukemia M7-#7, Nsp SNP array

source_name: Diagnostic_acute_leukemia M7-#7


title: Germline MLL-#8, Xba SNP array

source_name: Germline MLL-#8


title: ST60-T9

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56786.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 760, 5040; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.50; Parameter Scan Time = 14:56:03; Parameter PMT Volts = 520; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102026; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.40; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.50; Parameter Scan Time = 14:56:03; Parameter PMT Volts = 820; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101962; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.16; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST60-T9_4ug aRNA

tag: ST60-T9_4ug aRNA


title: Germline M7-#5, Nsp SNP array

source_name: Germline M7-#5


title: Diagnostic_acute_leukemia M7-#8, Sty2 SNP array


title: Diagnostic_acute_leukemia M7-#6, Nsp SNP array

source_name: Diagnostic_acute_leukemia M7-#6


title: Diagnostic_acute_leukemia MLL-#7, Xba SNP array

source_name: Diagnostic_acute_leukemia MLL-#7


title: ST60-T28

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56787.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 800, 5360; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.80; Parameter Scan Time = 12:10:12; Parameter PMT Volts = 640; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101861; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.35; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.80; Parameter Scan Time = 12:10:12; Parameter PMT Volts = 780; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101797; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.10; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST60-T28_4ug aRNA

tag: ST60-T28_4ug aRNA


title: Diagnostic_acute_leukemia MLL-#8, Xba SNP array

source_name: Diagnostic_acute_leukemia MLL-#8


title: Diagnostic_acute_leukemia M7-#5, Nsp SNP array

source_name: Diagnostic_acute_leukemia M7-#5


title: Germline MLL-#5, Xba SNP array

source_name: Germline MLL-#5


title: Diagnostic_acute_leukemia M7-#7, Sty2 SNP array


title: ST59-T3

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56784.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 760, 5680; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.59; Parameter Scan Time = 13:24:35; Parameter PMT Volts = 540; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101936; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.33; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.59; Parameter Scan Time = 13:24:35; Parameter PMT Volts = 630; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101872; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.13; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST59-T3_4ug aRNA

tag: ST59-T3_4ug aRNA


title: ST181-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56781.gif
Compound Based Treatment: Azithromycin
Disease State: Paratyphoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 880, 6080; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.23; Parameter Scan Time = 17:25:41; Parameter PMT Volts = 540; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102176; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.40; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.23; Parameter Scan Time = 17:25:41; Parameter PMT Volts = 660; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102112; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.22; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST181-T1_4ug aRNA

tag: ST181-T1_4ug aRNA


title: ST60-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56785.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 840, 5720; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.26; Parameter Scan Time = 18:48:35; Parameter PMT Volts = 570; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102258; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.40; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.26; Parameter Scan Time = 18:48:35; Parameter PMT Volts = 700; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102195; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.22; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST60-T1_4ug aRNA

tag: ST60-T1_4ug aRNA


title: Diagnostic_acute_leukemia M7-#6, Sty2 SNP array


title: Germline M7-#4, Nsp SNP array

source_name: Germline M7-#4


title: ST57-T3

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56782.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 880, 5880; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.03; Parameter Scan Time = 16:28:43; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102119; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.40; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.03; Parameter Scan Time = 16:28:43; Parameter PMT Volts = 770; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102055; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.22; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: Strat. REF Human aRNA 4ug

source_name: ST57-T3_4ug aRNA

tag: ST57-T3_4ug aRNA


title: Diagnostic_acute_leukemia MLL-#5, Xba SNP array

source_name: Diagnostic_acute_leukemia MLL-#5


title: Germline M7-#7, Sty2 SNP array

source_name: Germline M7-#7


title: ST180-T9

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56780.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 760, 5680; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.79; Parameter Scan Time = 13:11:43; Parameter PMT Volts = 540; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101922; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.36; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.79; Parameter Scan Time = 13:11:43; Parameter PMT Volts = 670; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101858; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.12; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST180-T9_4ug aRNA

tag: ST180-T9_4ug aRNA


title: Diagnostic_acute_leukemia MLL-#3, Xba SNP array

source_name: Diagnostic_acute_leukemia MLL-#3


title: PF433-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56852.gif
Compound Based Treatment: Artekin
Disease State: Malaria (P. vivax)

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1240, 5280; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.34; Parameter Scan Time = 10:43:19; Parameter PMT Volts = 580; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102403; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.13; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.34; Parameter Scan Time = 10:43:19; Parameter PMT Volts = 700; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102340; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.97; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: PF433-T1_4ug aRNA

tag: PF433-T1_4ug aRNA


title: Diagnostic_acute_leukemia M7-#5, Sty2 SNP array


title: Germline M7-#3, Nsp SNP array

source_name: Germline M7-#3


title: Germline M7-#5, Sty2 SNP array

source_name: Germline M7-#5


title: Diagnostic_acute_leukemia M7-#4, Sty2 SNP array

source_name: Diagnostic_acute_leukemia M7-#4


title: PF428-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56850.gif
Compound Based Treatment: Artekin
Disease State: Malaria (P. falciparum)

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1200, 5760; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.65; Parameter Scan Time = 10:16:45; Parameter PMT Volts = 560; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102378; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.24; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.65; Parameter Scan Time = 10:16:45; Parameter PMT Volts = 680; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102314; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.96; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: PF428-T1_4ug aRNA

tag: PF428-T1_4ug aRNA


title: Diagnostic_acute_leukemia M7-#3, Nsp SNP array

source_name: Diagnostic_acute_leukemia M7-#3


title: Diagnostic_acute_leukemia MLL-#2, Xba SNP array

source_name: Diagnostic_acute_leukemia MLL-#2


title: Germline M7-#3, Sty2 SNP array


title: Germline MLL-#1, Xba SNP array

source_name: Germline MLL-#1


title: Germline MLL-#3, Xba SNP array

source_name: Germline MLL-#3


title: Germline M7-#2, Nsp SNP array

source_name: Germline M7-#2


title: Diagnostic_acute_leukemia MLL-#1, Xba SNP array

source_name: Diagnostic_acute_leukemia MLL-#1


title: Diagnostic_acute_leukemia M7-#4, Nsp SNP array


title: Diagnostic_acute_leukemia M7-#2, Nsp SNP array

source_name: Diagnostic_acute_leukemia M7-#2


title: Germline M7-#4, Sty2 SNP array

source_name: Germline M7-#4


title: Diagnostic_acute_leukemia M7-#3, Sty2 SNP array


title: ST166F

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56637.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1560, 6160; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.52; Parameter Scan Time = 16:55:36; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101322; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.37; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.52; Parameter Scan Time = 16:55:36; Parameter PMT Volts = 790; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101259; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.21; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: Strat. REF Human aRNA 4ug

source_name: ST166F_4ug aRNA

tag: ST166F_4ug aRNA


title: PF400-T7

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56633.gif
Compound Based Treatment: Artekin
Disease State: Malaria (P. falciparum)

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1360, 5440; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.27; Parameter Scan Time = 18:54:34; Parameter PMT Volts = 480; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101442; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.40; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.27; Parameter Scan Time = 18:54:34; Parameter PMT Volts = 800; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101378; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.21; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: PF400-T7_4ug aRNA

tag: PF400-T7_4ug aRNA


title: Germline M7-#1, Nsp SNP array

source_name: Germline M7-#1


title: PF415-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56635.gif
Compound Based Treatment: Artekin
Disease State: Malaria (P. falciparum)

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1600, 7240; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.56; Parameter Scan Time = 10:13:26; Parameter PMT Volts = 530; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 100922; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.12; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.56; Parameter Scan Time = 10:13:26; Parameter PMT Volts = 700; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 100858; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.94; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: PF415-T1_4ug aRNA

tag: PF415-T1_4ug aRNA


title: Germline M7-#2, Sty2 SNP array

tag: tissue


title: Germline PML-#6, Xba SNP array

source_name: Germline PML-#6


title: Diagnostic_acute_leukemia PML-#7, Xba SNP array

source_name: Diagnostic_acute_leukemia PML-#7


title: Diagnostic_acute_leukemia PML-#6, Xba SNP array

source_name: Diagnostic_acute_leukemia PML-#6


title: Germline M7-#1, Sty2 SNP array


title: Diagnostic_acute_leukemia PML-#5, Xba SNP array

source_name: Diagnostic_acute_leukemia PML-#5


title: HC6

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56632.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1400, 6040; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.16; Parameter Scan Time = 11:54:08; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101022; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.31; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.16; Parameter Scan Time = 11:54:08; Parameter PMT Volts = 730; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 100958; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.06; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

tag: Strat. REF Human aRNA 4ug

source_name: HC6_4ug aRNA

tag: HC6_4ug aRNA


title: HC5

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56631.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1320, 5360; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.31; Parameter Scan Time = 15:22:15; Parameter PMT Volts = 490; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101230; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.38; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.31; Parameter Scan Time = 15:22:15; Parameter PMT Volts = 750; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101166; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.16; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

tag: LabeledExtract

source_name: HC5_4ug aRNA

tag: HC5_4ug aRNA


title: Germline MLL-#17, Nsp SNP array

source_name: Germline MLL-#17


title: Diagnostic_acute_leukemia MLL-#17, Nsp SNP array

source_name: Diagnostic_acute_leukemia MLL-#17


title: Diagnostic_acute_leukemia M7-#2, Sty2 SNP array


title: PF428-T28

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/56998.gif
Compound Based Treatment: Artekin
Disease State: Malaria (P. falciparum)

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 560, 6400; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.65; Parameter Scan Time = 10:14:31; Parameter PMT Volts = 480; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103012; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.07; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.65; Parameter Scan Time = 10:14:31; Parameter PMT Volts = 670; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 102948; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.92; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson


title: Diagnostic_acute_leukemia PML-#4, Xba SNP array

source_name: Diagnostic_acute_leukemia PML-#4


title: Germline PML-#7, Xba SNP array

source_name: Germline PML-#7


title: HC4

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56630.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1400, 6040; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.21; Parameter Scan Time = 12:07:08; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101036; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.28; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.21; Parameter Scan Time = 12:07:08; Parameter PMT Volts = 740; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 100972; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.07; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: HC4_4ug aRNA

tag: HC4_4ug aRNA


title: Diagnostic_acute_leukemia M7-#1, Sty2 SNP array

scan_protocol: As per manufacturer (Affymetrix).

source_name: Diagnostic_acute_leukemia M7-#1


title: Diagnostic_acute_leukemia MLL-#16, Nsp SNP array

source_name: Diagnostic_acute_leukemia MLL-#16


title: Diagnostic_acute_leukemia MLL-#15, Nsp SNP array

source_name: Diagnostic_acute_leukemia MLL-#15


title: Germline PML-#3, Xba SNP array

source_name: Germline PML-#3


title: Diagnostic_acute_leukemia M7-#1, Nsp SNP array


title: Germline PML-#2, Xba SNP array

source_name: Germline PML-#2


title: Diagnostic_acute_leukemia MLL-#16, Sty2 SNP array


title: Germline MLL-#13, Nsp SNP array

source_name: Germline MLL-#13


title: Diagnostic_acute_leukemia MLL-#13, Nsp SNP array

source_name: Diagnostic_acute_leukemia MLL-#13


title: Diagnostic_acute_leukemia PML-#3, Xba SNP array

source_name: Diagnostic_acute_leukemia PML-#3


title: ST179-T3

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56778.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 920, 6120; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.15; Parameter Scan Time = 18:08:27; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102218; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.44; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.15; Parameter Scan Time = 18:08:27; Parameter PMT Volts = 640; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102154; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.22; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: Strat. REF Human aRNA 4ug

source_name: ST179-T3_4ug aRNA

tag: ST179-T3_4ug aRNA


title: PF417-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/56990.gif
Compound Based Treatment: Artekin
Disease State: Malaria (P. falciparum)

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 400, 6200; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.97; Parameter Scan Time = 10:53:15; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103051; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.11; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.97; Parameter Scan Time = 10:53:15; Parameter PMT Volts = 820; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 102987; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.98; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: PF417-T1_4ug aRNA

tag: PF417-T1_4ug aRNA


title: ST178-T28

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56777.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1440, 6040; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.52; Parameter Scan Time = 18:21:29; Parameter PMT Volts = 530; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102231; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.40; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.52; Parameter Scan Time = 18:21:29; Parameter PMT Volts = 700; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102168; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.22; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST178-T28_4ug aRNA

tag: ST178-T28_4ug aRNA


title: Germline MLL-#13, Sty2 SNP array


title: Diagnostic_acute_leukemia MLL-#15, Sty2 SNP array


title: Diagnostic_acute_leukemia MLL-#12, Nsp SNP array

source_name: Diagnostic_acute_leukemia MLL-#12


title: ST180-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56779.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 840, 6000; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.97; Parameter Scan Time = 15:22:44; Parameter PMT Volts = 500; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102053; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.38; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.97; Parameter Scan Time = 15:22:44; Parameter PMT Volts = 680; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101989; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.20; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST180-T1_4ug aRNA

tag: ST180-T1_4ug aRNA


title: Diagnostic_acute_leukemia MLL-#14, Nsp SNP array

source_name: Diagnostic_acute_leukemia MLL-#14


title: Diagnostic_acute_leukemia MLL-#14, Sty2 SNP array


title: Germline PML-#1, Xba SNP array

source_name: Germline PML-#1


title: Diagnostic_acute_leukemia MLL-#12, Sty2 SNP array


title: Germline MLL-#11, Sty2 SNP array

source_name: Germline MLL-#11


title: ST178-T3

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56776.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1440, 6000; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 37.36; Parameter Scan Time = 09:36:38; Parameter PMT Volts = 520; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101708; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.06; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 37.36; Parameter Scan Time = 09:36:38; Parameter PMT Volts = 590; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101644; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.94; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST178-T3_4ug aRNA

tag: ST178-T3_4ug aRNA


title: Diagnostic_acute_leukemia MLL-#11, Nsp SNP array

source_name: Diagnostic_acute_leukemia MLL-#11


title: Germline MLL-#17, Sty2 SNP array

source_name: Germline MLL-#17


title: Germline MLL-#11, Nsp SNP array


title: Germline i16-#16, Xba SNP array

source_name: Germline i16-#16


title: Diagnostic_acute_leukemia PML-#2, Xba SNP array

source_name: Diagnostic_acute_leukemia PML-#2


title: Diagnostic_acute_leukemia MLL-#10, Nsp SNP array

source_name: Diagnostic_acute_leukemia MLL-#10


title: Diagnostic_acute_leukemia PML-#1, Xba SNP array

source_name: Diagnostic_acute_leukemia PML-#1


title: Diagnostic_acute_leukemia i16-#16, Xba SNP array

source_name: Diagnostic_acute_leukemia i16-#16


title: ST176-T9

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56774.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 960, 6160; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.83; Parameter Scan Time = 15:49:18; Parameter PMT Volts = 500; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102080; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.41; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.83; Parameter Scan Time = 15:49:18; Parameter PMT Volts = 700; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102016; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.22; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: Strat. REF Human aRNA 4ug

source_name: ST176-T9_4ug aRNA

tag: ST176-T9_4ug aRNA


title: ST177-T28

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56775.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1400, 6600; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.26; Parameter Scan Time = 12:45:34; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101896; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.39; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.26; Parameter Scan Time = 12:45:34; Parameter PMT Volts = 740; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101833; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.11; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST177-T28_4ug aRNA

tag: ST177-T28_4ug aRNA


title: Diagnostic_acute_leukemia MLL-#9, Nsp SNP array

source_name: Diagnostic_acute_leukemia MLL-#9


title: PF420-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56847.gif
Compound Based Treatment: Artekin
Disease State: Malaria (P. falciparum)

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1200, 4880; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.42; Parameter Scan Time = 09:47:59; Parameter PMT Volts = 600; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102349; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.16; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.42; Parameter Scan Time = 09:47:59; Parameter PMT Volts = 630; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102285; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.94; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: PF420-T1_4ug aRNA

tag: PF420-T1_4ug aRNA


title: PF428-T7

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/56994.gif
Compound Based Treatment: Artekin
Disease State: Malaria (P. falciparum)

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 560, 5760; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.63; Parameter Scan Time = 13:53:08; Parameter PMT Volts = 490; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103231; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.23; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.63; Parameter Scan Time = 13:53:08; Parameter PMT Volts = 650; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103167; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.09; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson


title: Diagnostic_acute_leukemia MLL-#8, Nsp SNP array

source_name: Diagnostic_acute_leukemia MLL-#8


title: Germline MLL-#8, Nsp SNP array

source_name: Germline MLL-#8


title: Diagnostic_acute_leukemia MLL-#9, Sty2 SNP array


title: Diagnostic_acute_leukemia MLL-#11, Sty2 SNP array


title: Diagnostic_acute_leukemia MLL-#13, Sty2 SNP array

source_name: Diagnostic_acute_leukemia MLL-#13


title: Diagnostic_acute_leukemia i16-#15, Xba SNP array

source_name: Diagnostic_acute_leukemia i16-#15


title: Germline MLL-#8, Sty2 SNP array


title: Diagnostic_acute_leukemia i16-#13, Xba SNP array

source_name: Diagnostic_acute_leukemia i16-#13


title: Diagnostic_acute_leukemia MLL-#7, Nsp SNP array

source_name: Diagnostic_acute_leukemia MLL-#7


title: Germline i16-#14, Xba SNP array

source_name: Germline i16-#14


title: Diagnostic_acute_leukemia i16-#14, Xba SNP array

source_name: Diagnostic_acute_leukemia i16-#14


title: Diagnostic_acute_leukemia i16-#12, Xba SNP array

source_name: Diagnostic_acute_leukemia i16-#12


title: Germline i16-#11, Xba SNP array

source_name: Germline i16-#11


title: ST171-T28

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56770.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1120, 6440; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.69; Parameter Scan Time = 13:51:51; Parameter PMT Volts = 610; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101962; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.36; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.69; Parameter Scan Time = 13:51:51; Parameter PMT Volts = 750; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101899; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.15; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST171-T28_4ug aRNA

tag: ST171-T28_4ug aRNA


title: ST173-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56771.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1360, 5040; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 37.57; Parameter Scan Time = 10:03:09; Parameter PMT Volts = 560; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101733; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.15; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 37.57; Parameter Scan Time = 10:03:09; Parameter PMT Volts = 660; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101670; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.96; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST173-T1_4ug aRNA

tag: ST173-T1_4ug aRNA


title: Diagnostic_acute_leukemia MLL-#8, Sty2 SNP array


title: PF406-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56845.gif
Compound Based Treatment: Artekin
Disease State: Malaria (P. falciparum)

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1120, 5560; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.58; Parameter Scan Time = 10:02:49; Parameter PMT Volts = 580; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102363; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.11; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.58; Parameter Scan Time = 10:02:49; Parameter PMT Volts = 660; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102300; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.96; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: Strat. REF Human aRNA 4ug

source_name: PF406-T1_4ug aRNA

tag: PF406-T1_4ug aRNA


title: Germline MLL-#5, Nsp SNP array

source_name: Germline MLL-#5

tag: tissue


title: ST175-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56773.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 920, 6120; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.02; Parameter Scan Time = 17:53:29; Parameter PMT Volts = 520; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102204; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.41; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.02; Parameter Scan Time = 17:53:29; Parameter PMT Volts = 650; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102140; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.23; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

tag: Strat. REF Human aRNA 4ug

source_name: ST175-T1_4ug aRNA

tag: ST175-T1_4ug aRNA


title: ST174-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56772.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 840, 5800; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 36.74; Parameter Scan Time = 09:50:36; Parameter PMT Volts = 540; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101721; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.17; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 36.74; Parameter Scan Time = 09:50:36; Parameter PMT Volts = 600; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101657; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.97; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

tag: LabeledExtract

source_name: ST174-T1_4ug aRNA

tag: ST174-T1_4ug aRNA