title: HC16

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56843.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1200, 5640; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.55; Parameter Scan Time = 10:30:07; Parameter PMT Volts = 570; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102390; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.26; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.55; Parameter Scan Time = 10:30:07; Parameter PMT Volts = 620; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102326; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.96; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: HC16_4ug aRNA

tag: HC16_4ug aRNA


title: HC15

status: Public on Jan 04 2010

type: RNA

city: Stanford

first: Lucinda

last: Thompson

state: CA

address: Fairchild Bldg., D035, 299 Campus Dr

department: Microbiology and Immunology, School of Medicine

country: USA

institute: Stanford University

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56842.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

hyb_protocol: not provided

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1240, 5640; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.71; Parameter Scan Time = 12:14:53; Parameter PMT Volts = 540; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102495; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.42; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.71; Parameter Scan Time = 12:14:53; Parameter PMT Volts = 640; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102431; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.07; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

data_processing: VALUE is Log (base 2) of the ratio of the median of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

molecule: total RNA

organism: Homo sapiens

source_name: Strat. REF Human aRNA 4ug

label_protocol: not provided

extract_protocol: not provided

tag: Strat. REF Human aRNA 4ug

tag: LabeledExtract

source_name: HC15_4ug aRNA

tag: HC15_4ug aRNA


title: Diagnostic_acute_leukemia MLL-#5, Nsp SNP array

type: genomic

city: Memphis

first: Jeffery

last: Klco

state: TN

address: 262 Danny Thomas Place

department: Pathology

institute: St Jude Children's Research Hospital

hyb_protocol: As per manufacturer (Affymetrix).

scan_protocol: As per manufacturer (Affymetrix).

data_processing: CEL files and CHP files (generated by Dynamic Model 3.0)  were processed by dChip and model-based expression performed using the PM-only model. Normalization was performed using the reference normalization algorithm developed at St Jude and described in Mullighan et al Nature 2007;446:758. The data matrix contains the normalized expression values produced by that algorithm.

label: Biotin

molecule: genomic DNA

source_name: Diagnostic_acute_leukemia MLL-#5

label_protocol: As per manufacturer (Affymetrix).

growth_protocol: Cryopreserved peripheral blood or bone marrow samples obtained at diagnosis or remission.

extract_protocol: Qiagen DNA blood mini or phenol chloroform.

tag: tissue

value: acute myeloid leukemia


title: Diagnostic_acute_leukemia MLL-#7, Sty2 SNP array

data_processing: CEL files and CHP files (generated by Dynamic Model 3.0)   were processed by dChip and model-based expression performed using the PM-only model. Normalization was performed using the reference normalization algorithm developed at St Jude and described in Mullighan et al Nature 2007;446:758. The data matrix contains the normalized expression values produced by that algorithm.

source_name: Diagnostic_acute_leukemia MLL-#7


title: Germline MLL-#5, Sty2 SNP array

source_name: Germline MLL-#5


title: Diagnostic_acute_leukemia MLL-#5, Sty2 SNP array


title: Diagnostic_acute_leukemia i16-#11, Xba SNP array

data_processing: CEL files and CHP files (generated by Dynamic Model 3.0) were processed by dChip and model-based expression performed using the PM-only model. Normalization was performed using the reference normalization algorithm developed at St Jude and described in Mullighan et al Nature 2007;446:758. The data matrix contains the normalized expression values produced by that algorithm.

source_name: Diagnostic_acute_leukemia i16-#11


title: Germline MLL-#3, Nsp SNP array

source_name: Germline MLL-#3


title: Germline MLL-#1, Nsp SNP array

source_name: Germline MLL-#1


title: Diagnostic_acute_leukemia MLL-#3, Nsp SNP array

source_name: Diagnostic_acute_leukemia MLL-#3


title: Diagnostic_acute_leukemia MLL-#10, Sty2 SNP array

source_name: Diagnostic_acute_leukemia MLL-#10


title: Diagnostic_acute_leukemia i16-#10, Xba SNP array

source_name: Diagnostic_acute_leukemia i16-#10


title: Diagnostic_acute_leukemia MLL-#2, Nsp SNP array

source_name: Diagnostic_acute_leukemia MLL-#2


title: Germline MLL-#3, Sty2 SNP array


title: Diagnostic_acute_leukemia MLL-#3, Sty2 SNP array


title: Diagnostic_acute_leukemia MLL-#2, Sty2 SNP array


title: Diagnostic_acute_leukemia i16-#9, Xba SNP array

source_name: Diagnostic_acute_leukemia i16-#9


title: HC3

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56629.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1480, 5800; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.66; Parameter Scan Time = 10:27:38; Parameter PMT Volts = 500; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 100936; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.13; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.66; Parameter Scan Time = 10:27:38; Parameter PMT Volts = 650; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 100872; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.95; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: HC3_4ug aRNA

tag: HC3_4ug aRNA


title: Germline i16-#8, Xba SNP array

source_name: Germline i16-#8


title: Germline PML-#7, Nsp SNP array

source_name: Germline PML-#7


title: Diagnostic_acute_leukemia i16-#8, Xba SNP array

source_name: Diagnostic_acute_leukemia i16-#8


title: Germline misc-#6, Hind SNP array

source_name: Germline misc-#6


title: HC14

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56841.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1320, 6520; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.84; Parameter Scan Time = 13:51:49; Parameter PMT Volts = 540; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102592; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.25; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.84; Parameter Scan Time = 13:51:49; Parameter PMT Volts = 610; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102528; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.09; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: Strat. REF Human aRNA 4ug

source_name: HC14_4ug aRNA

tag: HC14_4ug aRNA


title: HC13

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56840.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1360, 6400; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.42; Parameter Scan Time = 17:15:47; Parameter PMT Volts = 550; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102795; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.32; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.42; Parameter Scan Time = 17:15:47; Parameter PMT Volts = 670; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102732; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.17; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: HC13_4ug aRNA

tag: HC13_4ug aRNA


title: Diagnostic_acute_leukemia MLL-#1, Nsp SNP array

source_name: Diagnostic_acute_leukemia MLL-#1


title: Germline MLL-#1, Sty2 SNP array


title: Germline i16-#7, Xba SNP array

source_name: Germline i16-#7


title: ST66-T28

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2005-11/64984.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1480, 6360; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.65; Parameter Scan Time = 13:52:23; Parameter PMT Volts = 490; Parameter Scan Date = 2005-10-17; Parameter Pixel Size = 10; Parameter Laser on time = 43522; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.47; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.65; Parameter Scan Time = 13:52:23; Parameter PMT Volts = 630; Parameter Scan Date = 2005-10-17; Parameter Pixel Size = 10; Parameter Laser on time = 116657; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.62; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: Strat. aRNA 4ug

tag: Strat. aRNA 4ug

source_name: ST66-T28 4ug aRNA

tag: ST66-T28 4ug aRNA


title: ST59-T28

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56628.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1400, 4840; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 37.64; Parameter Scan Time = 14:09:17; Parameter PMT Volts = 560; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101157; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.40; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 37.64; Parameter Scan Time = 14:09:17; Parameter PMT Volts = 770; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 101094; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.15; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST59-T28_4ug aRNA

tag: ST59-T28_4ug aRNA


title: Diagnostic_acute_leukemia i16-#7, Xba SNP array

source_name: Diagnostic_acute_leukemia i16-#7


title: Germline i16-#6, Xba SNP array

source_name: Germline i16-#6


title: PF415-T1-repeat

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/56987.gif
Compound Based Treatment: Artekin
Disease State: Malaria (P. falciparum)

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 480, 6080; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.56; Parameter Scan Time = 12:53:17; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103171; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.22; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.56; Parameter Scan Time = 12:53:17; Parameter PMT Volts = 680; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103107; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.06; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson


title: Diagnostic_acute_leukemia PML-#7, Sty2 SNP array

source_name: Diagnostic_acute_leukemia PML-#7


title: Diagnostic_acute_leukemia PML-#5, Nsp SNP array

source_name: Diagnostic_acute_leukemia PML-#5


title: PF400-T7-repeat

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/56983.gif
Compound Based Treatment: Artekin
Disease State: Malaria (P. falciparum)

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 440, 5840; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 18.32; Parameter Scan Time = 08:56:43; Parameter PMT Volts = 500; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 102935; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.01; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 18.32; Parameter Scan Time = 08:56:43; Parameter PMT Volts = 730; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 102871; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.87; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson


title: Germline PML-#7, Sty2 SNP array


title: Diagnostic_acute_leukemia i16-#6, Xba SNP array

source_name: Diagnostic_acute_leukemia i16-#6


title: PF402-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/56984.gif
Compound Based Treatment: Artekin
Disease State: Malaria (P. falciparum)

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 440, 5440; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.73; Parameter Scan Time = 14:42:14; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103280; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.36; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.73; Parameter Scan Time = 14:42:14; Parameter PMT Volts = 810; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103216; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.11; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: PF402-T1_4ug aRNA

tag: PF402-T1_4ug aRNA


title: ST184-T9

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56626.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 800, 5880; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.40; Parameter Scan Time = 09:56:58; Parameter PMT Volts = 530; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 100905; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.21; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.40; Parameter Scan Time = 09:56:58; Parameter PMT Volts = 700; Parameter Scan Date = 2004-10-18; Parameter Pixel Size = 10; Parameter Laser on time = 100841; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.95; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST184-T9_4ug aRNA

tag: ST184-T9_4ug aRNA


title: Diagnostic_acute_leukemia PML-#7, Nsp SNP array


title: Germline PML-#6, Nsp SNP array

source_name: Germline PML-#6


title: HC6-repeat

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/56981.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1280, 6360; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.11; Parameter Scan Time = 11:11:27; Parameter PMT Volts = 550; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103069; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.14; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.11; Parameter Scan Time = 11:11:27; Parameter PMT Volts = 610; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103005; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.00; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson


title: Germline i16-#5, Xba SNP array

source_name: Germline i16-#5


title: Diagnostic_acute_leukemia PML-#6, Sty2 SNP array

source_name: Diagnostic_acute_leukemia PML-#6


title: Diagnostic_acute_leukemia MLL-#1, Sty2 SNP array


title: Germline PML-#6, Sty2 SNP array


title: Diagnostic_acute_leukemia PML-#4, Nsp SNP array

source_name: Diagnostic_acute_leukemia PML-#4


title: Diagnostic_acute_leukemia PML-#5, Sty2 SNP array


title: Korean Female, AK18, slide 13

status: Public on Jan 13 2010

city: Seoul

first: Dongwan

last: Hong

address: 28 Yeongeon-dong, Jongno-gu

department: Biochemistry and Molecular Biology

country: South Korea

institute: Genomic Medicine Institute, Seoul National University College of Medicine

description: CNV discovery from AK18 using NA10851 as a reference sample. 24M probes covering whole genome were distributed on 24 slides of 1.1M Agilent platform.

hyb_protocol: Oligoarray control targets and hybridization buffer (Agilent In Situ Hybridization Kit Plus) were added, and samples were applied to microarrays enclosed in Agilent SureHyb-enabled hybridization chambers. After hybridization, slides were washed using wash buffer I, II (Agilent Inc.).

scan_protocol: Scanned on an Agilent G2505 Scanner.

data_processing: Agilent Feature Extraction Software was used for background subtraction and LOWESS normalization.

source_name: Blood cells, Korean female

label_protocol: 1.5ul of genomic DNA fragmented and amplified using random primer. Cy3-dCTP and Cy5-dCTP were incorporated using the BioPrime DNA labelling kit using the manufacturer’s protocol.

growth_protocol: Cell lines were cultured under 10% FBS+standard RPMI media. No antibacterials were used.

extract_protocol: Genomic DNA was extracted using the Gentra DNA extraction kit (Qiagen).

treatment_protocol: Not treated.

tag: population

value: Korean

tag: gender

value: female

tag: sample source

value: anonymous

tag: sample type

value: test

source_name: NA10851 reference

value: Caucasian

value: male

value: HapMap

value: reference


title: Germline PML-#3, Nsp SNP array

source_name: Germline PML-#3


title: ST171-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56769.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1040, 6800; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.00; Parameter Scan Time = 16:02:40; Parameter PMT Volts = 520; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102093; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.41; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.00; Parameter Scan Time = 16:02:40; Parameter PMT Volts = 750; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102029; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.21; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: Strat. REF Human aRNA 4ug

source_name: ST171-T1_4ug aRNA

tag: ST171-T1_4ug aRNA


title: Diagnostic_acute_leukemia PML-#6, Nsp SNP array


title: Diagnostic_acute_leukemia PML-#4, Sty2 SNP array


title: Diagnostic_acute_leukemia PML-#3, Nsp SNP array

source_name: Diagnostic_acute_leukemia PML-#3


title: Diagnostic_acute_leukemia i16-#4, Xba SNP array

source_name: Diagnostic_acute_leukemia i16-#4


title: Germline i16-#4, Xba SNP array

source_name: Germline i16-#4


title: HC5-repeat

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/56980.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 800, 6680; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.53; Parameter Scan Time = 12:34:58; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103153; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.20; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.53; Parameter Scan Time = 12:34:58; Parameter PMT Volts = 660; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103089; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.04; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

tag: Strat. REF Human aRNA 4ug


title: Diagnostic_acute_leukemia i16-#5, Xba SNP array

source_name: Diagnostic_acute_leukemia i16-#5


title: Germline PML-#3, Sty2 SNP array


title: Diagnostic_acute_leukemia i16-#3, Xba SNP array

source_name: Diagnostic_acute_leukemia i16-#3


title: Germline PML-#2, Nsp SNP array

source_name: Germline PML-#2


title: Diagnostic_acute_leukemia PML-#2, Nsp SNP array

source_name: Diagnostic_acute_leukemia PML-#2


title: Germline i16-#2, Xba SNP array

source_name: Germline i16-#2


title: Diagnostic_acute_leukemia i16-#2, Xba SNP array

source_name: Diagnostic_acute_leukemia i16-#2


title: ST168-T28

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56767.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1040, 6520; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.21; Parameter Scan Time = 10:57:41; Parameter PMT Volts = 530; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101788; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.16; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.21; Parameter Scan Time = 10:57:41; Parameter PMT Volts = 660; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101724; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.03; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

tag: LabeledExtract

source_name: ST168-T28_4ug aRNA

tag: ST168-T28_4ug aRNA


title: Germline PML-#2, Sty2 SNP array

tag: tissue


title: ST167-T28

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56764.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1080, 6480; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.25; Parameter Scan Time = 18:33:56; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102244; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.41; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.25; Parameter Scan Time = 18:33:56; Parameter PMT Volts = 700; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102180; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.22; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST167-T28_4ug aRNA

tag: ST167-T28_4ug aRNA


title: Germline i16-#1, Xba SNP array

source_name: Germline i16-#1


title: Germline PML-#1, Sty2 SNP array

source_name: Germline PML-#1


title: Germline PML-#1, Nsp SNP array


title: HC11

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56838.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1520, 6600; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.52; Parameter Scan Time = 11:48:33; Parameter PMT Volts = 610; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102469; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.38; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.52; Parameter Scan Time = 11:48:33; Parameter PMT Volts = 590; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102406; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.06; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: HC11_4ug aRNA

tag: HC11_4ug aRNA


title: Diagnostic_acute_leukemia PML-#2, Sty2 SNP array

scan_protocol: As per manufacturer (Affymetrix).


title: Diagnostic_acute_leukemia i16-#1, Xba SNP array

source_name: Diagnostic_acute_leukemia i16-#1


title: Germline i16-#16, Nsp SNP array

source_name: Germline i16-#16


title: Diagnostic_acute_leukemia i16-#16, Nsp SNP array

source_name: Diagnostic_acute_leukemia i16-#16


title: HC10

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56837.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1440, 6680; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.78; Parameter Scan Time = 13:40:17; Parameter PMT Volts = 540; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102581; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.30; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.78; Parameter Scan Time = 13:40:17; Parameter PMT Volts = 630; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102517; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.08; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: Strat. REF Human aRNA 4ug

source_name: HC10_4ug aRNA

tag: HC10_4ug aRNA


title: Diagnostic_acute_leukemia PML-#1, Nsp SNP array

source_name: Diagnostic_acute_leukemia PML-#1


title: HC12

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56839.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1200, 5040; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.11; Parameter Scan Time = 10:56:57; Parameter PMT Volts = 750; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102417; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.30; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.11; Parameter Scan Time = 10:56:57; Parameter PMT Volts = 600; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102353; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.97; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: HC12_4ug aRNA

tag: HC12_4ug aRNA


title: Germline i16-#3, Xba SNP array

source_name: Germline i16-#3


title: Diagnostic_acute_leukemia PML-#1, Sty2 SNP array


title: Germline i16-#16, Sty2 SNP array


title: ST167-T3

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56763.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 960, 6400; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 37.88; Parameter Scan Time = 10:42:31; Parameter PMT Volts = 570; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101774; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.21; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 37.88; Parameter Scan Time = 10:42:31; Parameter PMT Volts = 620; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101710; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.98; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST167-T3_4ug aRNA

tag: ST167-T3_4ug aRNA


title: Diagnostic_acute_leukemia i16-#16, Sty2 SNP array


title: ST60-T3

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56836.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1440, 6800; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.28; Parameter Scan Time = 17:53:41; Parameter PMT Volts = 590; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102833; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.35; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.28; Parameter Scan Time = 17:53:41; Parameter PMT Volts = 670; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102770; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.19; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST60-T3_4ug aRNA

tag: ST60-T3_4ug aRNA


title: ST170-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56768.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1080, 6720; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.12; Parameter Scan Time = 17:40:06; Parameter PMT Volts = 530; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102190; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.41; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.12; Parameter Scan Time = 17:40:06; Parameter PMT Volts = 720; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102126; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.23; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST170-T1_4ug aRNA

tag: ST170-T1_4ug aRNA


title: Germline i16-#14, Nsp SNP array

source_name: Germline i16-#14


title: Diagnostic_acute_leukemia i16-#15, Sty2 SNP array

source_name: Diagnostic_acute_leukemia i16-#15


title: Diagnostic_acute_leukemia AE-#20, Xba SNP array

source_name: Diagnostic_acute_leukemia AE-#20


title: Germline AE-#19, Xba SNP array

source_name: Germline AE-#19


title: Diagnostic_acute_leukemia AE-#19, Xba SNP array

source_name: Diagnostic_acute_leukemia AE-#19


title: ST59-T9

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56835.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1280, 5480; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.21; Parameter Scan Time = 11:09:43; Parameter PMT Volts = 630; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102430; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.22; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.21; Parameter Scan Time = 11:09:43; Parameter PMT Volts = 590; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102367; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.03; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST59-T9_4ug aRNA

tag: ST59-T9_4ug aRNA


title: ST166M

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56762.gif
Compound Based Treatment: N/A
Disease State: Chronic Carrier S. Typhi

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1000, 6120; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.53; Parameter Scan Time = 11:23:38; Parameter PMT Volts = 500; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101814; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.33; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.53; Parameter Scan Time = 11:23:38; Parameter PMT Volts = 780; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101750; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.08; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST166M_4ug aRNA

tag: ST166M_4ug aRNA


title: Germline i16-#14, Sty2 SNP array


title: Diagnostic_acute_leukemia i16-#13, Nsp SNP array

source_name: Diagnostic_acute_leukemia i16-#13


title: Diagnostic_acute_leukemia PML-#3, Sty2 SNP array

source_name: Diagnostic_acute_leukemia PML-#3


title: Germline AE-#18, Xba SNP array

source_name: Germline AE-#18


title: Germline AE-#20, Xba SNP array

source_name: Germline AE-#20


title: ST166-T28

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56761.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 920, 6320; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 37.47; Parameter Scan Time = 14:05:07; Parameter PMT Volts = 600; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101976; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.37; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 37.47; Parameter Scan Time = 14:05:07; Parameter PMT Volts = 840; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 101912; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.15; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: Strat. REF Human aRNA 4ug

source_name: ST166-T28_4ug aRNA

tag: ST166-T28_4ug aRNA


title: Diagnostic_acute_leukemia AE-#18, Xba SNP array

source_name: Diagnostic_acute_leukemia AE-#18


title: Diagnostic_acute_leukemia i16-#14, Sty2 SNP array

source_name: Diagnostic_acute_leukemia i16-#14


title: Diagnostic_acute_leukemia i16-#12, Nsp SNP array

source_name: Diagnostic_acute_leukemia i16-#12


title: Diagnostic_acute_leukemia i16-#13, Sty2 SNP array


title: ST166-T3

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56760.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1000, 6280; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.16; Parameter Scan Time = 16:15:34; Parameter PMT Volts = 520; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102106; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.41; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 40.16; Parameter Scan Time = 16:15:34; Parameter PMT Volts = 670; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102043; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.22; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST166-T3_4ug aRNA

tag: ST166-T3_4ug aRNA


title: ST184-T28

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56831.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1800, 6880; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.07; Parameter Scan Time = 18:19:00; Parameter PMT Volts = 540; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102859; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.35; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.07; Parameter Scan Time = 18:19:00; Parameter PMT Volts = 780; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102795; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.19; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST184-T28_4ug aRNA

tag: ST184-T28_4ug aRNA


title: Germline i16-#11, Nsp SNP array

source_name: Germline i16-#11


title: Germline i16-#11, Sty2 SNP array


title: Diagnostic_acute_leukemia i16-#11, Sty2 SNP array

source_name: Diagnostic_acute_leukemia i16-#11


title: Diagnostic_acute_leukemia i16-#9, Nsp SNP array

source_name: Diagnostic_acute_leukemia i16-#9


title: Diagnostic_acute_leukemia AE-#16, Xba SNP array

source_name: Diagnostic_acute_leukemia AE-#16


title: Diagnostic_acute_leukemia i16-#11, Nsp SNP array


title: Diagnostic_acute_leukemia AE-#17, Xba SNP array

source_name: Diagnostic_acute_leukemia AE-#17


title: ST59-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56834.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1240, 6680; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.81; Parameter Scan Time = 14:41:40; Parameter PMT Volts = 600; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102641; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.26; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.81; Parameter Scan Time = 14:41:40; Parameter PMT Volts = 650; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102578; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.12; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST59-T1_4ug aRNA

tag: ST59-T1_4ug aRNA


title: Diagnostic_acute_leukemia i16-#10, Nsp SNP array

source_name: Diagnostic_acute_leukemia i16-#10


title: Germline AE-#17, Xba SNP array

source_name: Germline AE-#17


title: Diagnostic_acute_leukemia i16-#12, Sty2 SNP array


title: HC3-repeat

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/56978.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1200, 6160; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.60; Parameter Scan Time = 13:40:55; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103219; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.22; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.60; Parameter Scan Time = 13:40:55; Parameter PMT Volts = 680; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103155; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.07; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

tag: Strat. REF Human aRNA 4ug


title: Diagnostic_acute_leukemia i16-#14, Nsp SNP array


title: HC4-1st repeat

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/56979.gif
Compound Based Treatment: N/A
Disease State: Healthy Control

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 800, 6840; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.28; Parameter Scan Time = 11:47:34; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103106; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.16; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.28; Parameter Scan Time = 11:47:34; Parameter PMT Volts = 670; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103042; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.02; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

tag: LabeledExtract

source_name: HC4-1st repeat

tag: HC4-1st repeat


title: ST26-T9

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/56977.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1240, 6040; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.88; Parameter Scan Time = 10:39:14; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103038; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.10; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.88; Parameter Scan Time = 10:39:14; Parameter PMT Volts = 670; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 102974; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.93; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson


title: Diagnostic_acute_leukemia AE-#15, Xba SNP array

source_name: Diagnostic_acute_leukemia AE-#15

tag: tissue


title: Diagnostic_acute_leukemia AE-#14, Xba SNP array

source_name: Diagnostic_acute_leukemia AE-#14


title: Diagnostic_acute_leukemia AE-#13, Xba SNP array

source_name: Diagnostic_acute_leukemia AE-#13


title: Diagnostic_acute_leukemia i16-#8, Nsp SNP array

source_name: Diagnostic_acute_leukemia i16-#8


title: Diagnostic_acute_leukemia i16-#9, Sty2 SNP array


title: ST26-T3

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/56976.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 560, 6440; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.46; Parameter Scan Time = 12:22:51; Parameter PMT Volts = 500; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103140; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.19; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.46; Parameter Scan Time = 12:22:51; Parameter PMT Volts = 640; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103077; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.03; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: Strat. REF Human aRNA 4ug


title: Germline i16-#6, Nsp SNP array

source_name: Germline i16-#6


title: ST26-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/56975.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 560, 6360; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.22; Parameter Scan Time = 11:34:47; Parameter PMT Volts = 530; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103092; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.15; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.22; Parameter Scan Time = 11:34:47; Parameter PMT Volts = 630; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103029; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.02; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson


title: Germline i16-#7, Nsp SNP array

scan_protocol: As per manufacturer (Affymetrix).

source_name: Germline i16-#7


title: Diagnostic_acute_leukemia AE-#11, Xba SNP array

source_name: Diagnostic_acute_leukemia AE-#11


title: ST52-T9

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/56971.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 560, 6640; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.18; Parameter Scan Time = 09:21:22; Parameter PMT Volts = 550; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 102960; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.05; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.18; Parameter Scan Time = 09:21:22; Parameter PMT Volts = 660; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 102896; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.89; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson


title: Germline i16-#8, Sty2 SNP array

source_name: Germline i16-#8


title: Diagnostic_acute_leukemia AE-#10, Xba SNP array

source_name: Diagnostic_acute_leukemia AE-#10


title: Germline i16-#5, Nsp SNP array

source_name: Germline i16-#5


title: ST52-T3

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/56970.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 640, 6720; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.34; Parameter Scan Time = 09:38:26; Parameter PMT Volts = 530; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 102976; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.03; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.34; Parameter Scan Time = 09:38:26; Parameter PMT Volts = 640; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 102913; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.92; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson


title: Diagnostic_acute_leukemia i16-#7, Nsp SNP array

source_name: Diagnostic_acute_leukemia i16-#7


title: Diagnostic_acute_leukemia i16-#10, Sty2 SNP array


title: Diagnostic_acute_leukemia i16-#7, Sty2 SNP array


title: Diagnostic_acute_leukemia AE-#12, Xba SNP array

source_name: Diagnostic_acute_leukemia AE-#12


title: Germline i16-#7, Sty2 SNP array


title: Diagnostic_acute_leukemia i16-#6, Nsp SNP array

source_name: Diagnostic_acute_leukemia i16-#6


title: ST166-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56759.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1000, 6400; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.41; Parameter Scan Time = 17:12:27; Parameter PMT Volts = 570; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102162; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.40; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.41; Parameter Scan Time = 17:12:27; Parameter PMT Volts = 700; Parameter Scan Date = 2004-10-20; Parameter Pixel Size = 10; Parameter Laser on time = 102099; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.23; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST166-T1_4ug aRNA

tag: ST166-T1_4ug aRNA


title: Diagnostic_acute_leukemia AE-#9, Xba SNP array

source_name: Diagnostic_acute_leukemia AE-#9


title: Germline i16-#6, Sty2 SNP array


title: ST184-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56828.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1800, 6520; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.83; Parameter Scan Time = 14:16:13; Parameter PMT Volts = 580; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102617; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.29; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.83; Parameter Scan Time = 14:16:13; Parameter PMT Volts = 630; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102553; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.11; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST184-T1_4ug aRNA

tag: ST184-T1_4ug aRNA


title: Diagnostic_acute_leukemia i16-#6, Sty2 SNP array


title: Diagnostic_acute_leukemia i16-#15, Nsp SNP array

source_name: Diagnostic_acute_leukemia i16-#15


title: Germline AE-#8, Xba SNP array

source_name: Germline AE-#8


title: ST183-T28

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56827.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1800, 6440; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.44; Parameter Scan Time = 16:36:25; Parameter PMT Volts = 620; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102756; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.32; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.44; Parameter Scan Time = 16:36:25; Parameter PMT Volts = 730; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102693; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.17; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST183-T28_4ug aRNA

tag: ST183-T28_4ug aRNA


title: Germline i16-#5, Sty2 SNP array


title: Germline i16-#4, Nsp SNP array

source_name: Germline i16-#4


title: Germline AE-#7, Xba SNP array

source_name: Germline AE-#7


title: Diagnostic_acute_leukemia i16-#4, Nsp SNP array

source_name: Diagnostic_acute_leukemia i16-#4


title: ST181-T28

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56824.gif
Compound Based Treatment: Azithromycin
Disease State: Paratyphoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1800, 6280; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.83; Parameter Scan Time = 14:03:58; Parameter PMT Volts = 590; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102604; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.25; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.83; Parameter Scan Time = 14:03:58; Parameter PMT Volts = 630; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102541; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.11; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: Strat. REF Human aRNA 4ug

source_name: ST181-T28_4ug aRNA

tag: ST181-T28_4ug aRNA


title: Diagnostic_acute_leukemia AE-#8, Xba SNP array

source_name: Diagnostic_acute_leukemia AE-#8


title: Germline i16-#8, Nsp SNP array

source_name: Germline i16-#8


title: ST182-T3

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56825.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1760, 6160; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.00; Parameter Scan Time = 15:07:20; Parameter PMT Volts = 500; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102667; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.30; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.00; Parameter Scan Time = 15:07:20; Parameter PMT Volts = 680; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102603; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.13; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST182-T3_4ug aRNA

tag: ST182-T3_4ug aRNA


title: Germline AE-#6, Xba SNP array

source_name: Germline AE-#6


title: Diagnostic_acute_leukemia AE-#7, Xba SNP array

source_name: Diagnostic_acute_leukemia AE-#7


title: Germline i16-#3, Nsp SNP array

source_name: Germline i16-#3


title: Diagnostic_acute_leukemia i16-#3, Nsp SNP array

source_name: Diagnostic_acute_leukemia i16-#3


title: ST183-T3

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56826.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1720, 6480; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.44; Parameter Scan Time = 17:03:00; Parameter PMT Volts = 570; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102783; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.33; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.44; Parameter Scan Time = 17:03:00; Parameter PMT Volts = 710; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102719; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.17; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST183-T3_4ug aRNA

tag: ST183-T3_4ug aRNA


title: Diagnostic_acute_leukemia i16-#5, Sty2 SNP array

source_name: Diagnostic_acute_leukemia i16-#5


title: ST181-T9

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56823.gif
Compound Based Treatment: Azithromycin
Disease State: Paratyphoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1960, 6320; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.42; Parameter Scan Time = 15:31:47; Parameter PMT Volts = 660; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102692; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.31; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.42; Parameter Scan Time = 15:31:47; Parameter PMT Volts = 710; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102628; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.15; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST181-T9_4ug aRNA

tag: ST181-T9_4ug aRNA


title: Diagnostic_acute_leukemia i16-#4, Sty2 SNP array


title: ST180-T28

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56822.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 2240, 6320; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.44; Parameter Scan Time = 16:49:24; Parameter PMT Volts = 540; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102770; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.33; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.44; Parameter Scan Time = 16:49:24; Parameter PMT Volts = 800; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102706; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.17; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST180-T28_4ug aRNA

tag: ST180-T28_4ug aRNA


title: Diagnostic_acute_leukemia AE-#6, Xba SNP array

source_name: Diagnostic_acute_leukemia AE-#6


title: Diagnostic_acute_leukemia i16-#2, Nsp SNP array

source_name: Diagnostic_acute_leukemia i16-#2


title: Germline AE-#5, Xba SNP array

source_name: Germline AE-#5


title: Diagnostic_acute_leukemia i16-#3, Sty2 SNP array


title: Germline i16-#2, Sty2 SNP array

source_name: Germline i16-#2


title: Diagnostic_acute_leukemia AE-#5, Xba SNP array

source_name: Diagnostic_acute_leukemia AE-#5


title: ST179-T9

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56820.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1800, 6000; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.46; Parameter Scan Time = 14:54:17; Parameter PMT Volts = 580; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102655; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.26; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.46; Parameter Scan Time = 14:54:17; Parameter PMT Volts = 670; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102591; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.12; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: Strat. REF Human aRNA 4ug

source_name: ST179-T9_4ug aRNA

tag: ST179-T9_4ug aRNA


title: Germline i16-#2, Nsp SNP array


title: Germline i16-#3, Sty2 SNP array


title: ST180-T3

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56821.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 1880, 6440; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.76; Parameter Scan Time = 13:28:16; Parameter PMT Volts = 540; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102569; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.42; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.76; Parameter Scan Time = 13:28:16; Parameter PMT Volts = 630; Parameter Scan Date = 2004-10-22; Parameter Pixel Size = 10; Parameter Laser on time = 102505; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.07; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson

source_name: ST180-T3_4ug aRNA

tag: ST180-T3_4ug aRNA


title: Germline AE-#4, Xba SNP array

source_name: Germline AE-#4


title: Diagnostic_acute_leukemia i16-#2, Sty2 SNP array


title: Germline AE-#20, Nsp SNP array

source_name: Germline AE-#20


title: Diagnostic_acute_leukemia AE-#4, Xba SNP array

source_name: Diagnostic_acute_leukemia AE-#4


title: ST52-T1

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/56969.gif
Compound Based Treatment: Gatifloxicin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 840, 6880; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.53; Parameter Scan Time = 10:02:34; Parameter PMT Volts = 520; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103001; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.05; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 38.53; Parameter Scan Time = 10:02:34; Parameter PMT Volts = 640; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 102937; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 0.91; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson


title: Diagnostic_acute_leukemia AE-#20, Nsp SNP array

source_name: Diagnostic_acute_leukemia AE-#20


title: Germline i16-#1, Sty2 SNP array

source_name: Germline i16-#1


title: ST174-T28

description:
Simple annotation: Pathogen, Salmonella
Image: http://smd.stanford.edu/MicroArray/gifs/2004-11/56968.gif
Compound Based Treatment: Azithromycin
Disease State: Typhoid

scan_protocol: not provided Feature Extraction; Software and parameters for feature extraction.; Protocol Type = Feature Extraction; Parameter Image Origin = 560, 6640; Parameter Datafile type = GenePix Results 3; Software: type: feature extraction; Performer: Lucinda,,Thompson Scanning parameters - Channel 1; Parameters for laser scanning of a hybridized array in channel 1.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.36; Parameter Scan Time = 11:59:32; Parameter PMT Volts = 510; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103117; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 2.18; Parameter Scan Power = 100; Parameter Scanning software version = 2.0.3.1; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson Scanning parameters - Channel 2; Parameters for laser scanning of a hybridized array in channel 2.; Protocol Type = Scanning parameters; Parameter Scanner Make = Axon Instruments (V1.00); Parameter Scan Temperature = 39.36; Parameter Scan Time = 11:59:32; Parameter PMT Volts = 670; Parameter Scan Date = 2004-10-24; Parameter Pixel Size = 10; Parameter Laser on time = 103053; Parameter Focus Position = 0; Parameter Scanner Model = GenePix 4000A [47902]; Parameter Laser Power = 1.02; Parameter Scanning software version = 2.0.3.1; Parameter Scan Power = 100; Parameter Scanning software = AxImageIO; Performer: Lucinda,,Thompson


title: Diagnostic_acute_leukemia i16-#1, Sty2 SNP array

source_name: Diagnostic_acute_leukemia i16-#1


title: Germline AE-#3, Xba SNP array

source_name: Germline AE-#3


title: Germline AE-#20, Sty2 SNP array


title: Diagnostic_acute_leukemia AE-#3, Xba SNP array

source_name: Diagnostic_acute_leukemia AE-#3


title: Germline AE-#2, Xba SNP array

source_name: Germline AE-#2


title: Diagnostic_acute_leukemia AE-#19, Nsp SNP array

source_name: Diagnostic_acute_leukemia AE-#19