title: c HUVEC/SKBR-3 co-culture 1

description:
Simple annotation: Cell-line, co-culture
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67581.gif


title: c HDMEC monoculture 2

status: Public on Feb 18 2010

type: RNA

city: Stanford

last: Stanford Microarray Database

state: CA

address: 300 Pasteur Drive

department: Stanford University, School of Medicine

country: USA

institute: Stanford Microarray Database (SMD)

description:
Simple annotation: Cell-line, Control experiment
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67556.gif

hyb_protocol: not provided

scan_protocol: GenePix 4000A

data_processing: VALUE is Log (base 2) of the ratio of the median of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

molecule: total RNA

organism: Homo sapiens

source_name: stratagene universal reference

label_protocol: amplified RNA dircect inocorporaton; The protocol was modified for amplified RNA: 1. 6ug of amplified RNA and 10ug of random hexamer primer were mixed in a total volume of 15.4 ul. Then the described protocol was followed.; Protocol Type = Labeling; Performer: Martin,,Buess

extract_protocol: MessageAmpII; Total RNA was amplified using the Message AmpTM II aRNA Kit (Ambion, Austin, TX), according to the manufacturer's instructions.; Protocol Type = Amplification; Performer: Martin,,Buess

tag: reference

value: Stratagene Universal reference; pooled from 11 cell lines

source_name: HDMEC

label_protocol: amplified RNA direct incorporation method; The protocol was modified for amplified RNA:  6ug of amplified RNA was mixed with 10ug of random hexamer primer pd(N)6( Procuct number 27-2166-01, Amersham Biosciences) in a total volume of 15.4 ul. Then the protocol was followed as described; Protocol Type = Labeling; Performer: Martin,,Buess

growth_protocol: Endothelial co-culture conditions; Human mammary epithelial cells (HMEC) (Cambrex Bio Science Walkersville, Inc) were expanded in mammary epithelial basal medium supplemented with bovine pituitary extract, human EGF, insulin and antibiotics (Clonetics, Cambrex Bio Science Walkersville, Inc). MCF-7, T47D, MDA-MB231, SKBR-3, Hs578T, BT549 (ATTC) were propagated in DMEM supplemented with 10% FBS (HyClone, Logan UT), glutamine, 100U/ml penicillin and 100 μg/ml streptomycin (GIBCO, Grand Island, N.Y.). HUVEC (ATTC) AND HDMEC (Cambrex Bio Science Walkersville, Inc) were expanded in endothelial basal media (CAMBREX Bio Science Rockland, Inc Rockland, Maine) supplemented with hEGF, Hydrocortisone, GA-1000 (Gentamicin, Amphotericin-B), 5% FBS, VEGF, hFGF-B (w/ heparin), R3 -IGF-and ascorbic acid. For co-culture experiments the cells were cultivated for 48 hours at 50,000 cells/cm2 in endothelial basal media (CAMBREX Bio Science Rockland, Inc Rockland, Maine) with 0.2% FBS, which was a good universal media for all cells involved.; Protocol Type = Biological Sample; Performer: Martin,,Buess

extract_protocol:
RNeasy; Total RNA was isolated using the RNeasy mini kit (QIAGEN), according to the manufacturer's instructions.; Protocol Type = Extract preparation; Performer: Martin,,Buess
MessageAmp II; RNA was amplified using the Message AmpTM II aRNA Kit (Ambion, Austin, TX) according to the manufacturer's instructions.; Protocol Type = Amplification; Performer: Martin,,Buess

tag: cell type

value: HDMEC

tag: cell line

value: monoculture


title: c HDMEC/SKBR3 co-culture 3

description:
Simple annotation: Cell-line, co-culture
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67600.gif

value: co-culture


title: NOX strain rep2

city: Göteborg

first: Goutham

middle: N

last: Vemuri

address: Kemivagen 10

department: Chemical and Biological Engineering

country: Sweden

institute: Chalmers University of Technology

hyb_protocol: Standard Affymetrix protocol.

scan_protocol: Standard Affymetrix protocol.

data_processing:
GCRMA for background correction and non-linear quantile normalization using qspline.
The Sample table reports data for only those probes specific for MG1655 (the background strain we used).

label: biotin

organism: Escherichia coli str. K-12 substr. MG1655

source_name: NOX strain, mid exponential phase

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

growth_protocol: Growth on MOPS medium supplemented with glucose, cells harvested in mid-exponential phase

extract_protocol: Total RNA was extracted using Qiagen Rneasy kits

treatment_protocol: Cells harvested on ice and frozen in liquid nitrogen after separation from the media

tag: strain

value: NOX [MG1655/pAC06 (MG1655 transformed with a plasmid containing NADH oxidase)]

tag: protocol

value: NADH reduction


title: NOX strain rep3


title: ATPase strain rep3

source_name: ATPase strain, mid exponential phase

value: ATPase [MG1655/pCP41 (MG1655 transformed with a plasmid containing soluble ATPase)]

value: ATP reduction


title: ATPase strain rep2


title: ATPase strain rep1


title: Reference Strain rep3

source_name: Reference Strain, mid exponential phase

value: REF [MG1655/pAK80 (MG1655 transformed with a plasmid with no insert)]

value: control


title: NOX strain rep1


title: Reference Strain rep2


title: Reference Strain rep1


title: c HMEC monoculture 2

description:
Simple annotation: Cell-line, Control experiment
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67554.gif

label_protocol: not provided

extract_protocol: not provided

source_name: HMEC

value: HMEC


title: c T47D monoculture 1

description:
Simple annotation: Cell-line, Control experiment
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67565.gif

source_name: sample


title: c HUVEC/MCF-7 co-culture 1

description:
Simple annotation: Cell-line, co-culture
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67571.gif

source_name: stratagene human reference

value: HUVEC/ MCF-7


title: c - MDA-MB-231

description:
Simple annotation: Cell-line, Control experiment
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67598.gif


title: c BT549 monoculture 2

description:
Simple annotation: Cell-line, Control experiment
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67597.gif


title: c HMEC monoculture 1

description:
Simple annotation: Cell-line, Control experiment
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67553.gif


title: c HUVEC/Hs578T co-culture 1

description:
Simple annotation: Cell-line, co-culture
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67579.gif


title: c MCF-7 monoculture 2

description:
Simple annotation: Cell-line, Control experiment
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67558.gif


title: c BT549 monoculture 1

description:
Simple annotation: Cell-line, Control experiment
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67560.gif


title: c HDMEC/MCF-7 co-culture 2

description:
Simple annotation: Cell-line, co-culture
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67586.gif


title: GIST primary pGIST04-062

type: genomic

city: Cambridge

first: Craig

last: Mermel

state: MA

address: 7 Cambridge Center

department: Cancer Program

institute: Broad Institute

description: Hybridized to 250K_Sty

hyb_protocol: Each sample was genotyped using the Sty I chip of the 500K Human Mapping Array wet (Affymetrix), containing probes to 238,270 SNP loci, according to manufacturer’s instructions. In brief, 250 ng of genomic DNA was digested with the StyI restriction enzyme (New England Biolabs), ligated to an adaptor with T4 ligase (New England Biolabs), and PCR-amplified using a 9700 Thermal Cycler I (Applied Biosystems) and Titanium Taq (Clontech) to achieve fragments ranging from 200-1100 bp. These fragments were pooled, concentrated, processed through a clean-up step, and further fragmented with DNaseI (Affymetrix) before being labeled, denatured, and hybridized to arrays

scan_protocol: Arrays were washed and scanned using the GeneChip Scanner 3000 7G (Affymetrix)

data_processing:
Probe-level signal intensities were normalized to a common reference array using quantile normalization and combined to form SNP-level signal intensities using the dChip model-based expression (PM/MM) method . Genome-wide copy number estimates were obtained using tangent normalization, in which tumor signal intensities are divided by signal intensities from the linear combination of all normal samples that is most similar to the tumor (as described in Beroukhim et al, In Press; and Getz et al., In Preparation).  Cancer samples were normalized against a pool of 1,480 reference samples derived from multiple studies; the code and reference data necessary to replicate this analysis are available for download in GEO (accession GSE17958). The attached data matrix files contains the normalized copy-number values produced by that algorithm.
Genotype Call (SNP call) are provided in .CHP.TXT files: AA, AB, BB, NC, and NoCall.  Normalized copy number data for samples can be found in tumor-type matrix files: 'Signal' = Normalized copy number.

label: Biotin

molecule: genomic DNA

label_protocol: As per manufacturer (Affymetrix)

growth_protocol: Cell lines were grown according to standard conditions.

extract_protocol: DNA was obtained from cell line pellets or tumors frozen at the time of surgical dissection and maintained at -80C until use, with the exception of 11 gliomas from which sufficiently high-quality DNA could be obtained from paraffin-embedded samples. The majority of tumors were obtained at primary surgery, with the exceptions of 27 prostate tumors obtained through rapid autopsy programs at the Universities of Washington and Michigan

value: GIST


title: GIST primary pGIST99-698

description: Hybridized to 250K_Sty


title: c HDMEC/MDA-MB-231co-culture 2

description:
Simple annotation: Cell-line, co-culture
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67590.gif


title: c HUVEC/HMEC co-culture 1

description:
Simple annotation: Cell-line, co-culture
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67569.gif

source_name: HUVEC/HMEC

value: HUVEC/HMEC


title: GIST primary pGIST02-496

description: Hybridized to 250K_Sty


title: GIST primary pGIST02-636

description: Hybridized to 250K_Sty


title: GIST primary pGIST02-637

description: Hybridized to 250K_Sty


title: c T47D monoculture 2

description:
Simple annotation: Cell-line, Control experiment
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67566.gif


title: c HUVEC/MDA-MB-231 co-culture 1

description:
Simple annotation: Cell-line, co-culture
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67575.gif


title: GIST primary pGIST04-418

description: Hybridized to 250K_Sty


title: GIST primary pGIST02-638

description: Hybridized to 250K_Sty


title: GIST primary pGIST01-609

description: Hybridized to 250K_Sty


title: GIST primary pGIST06-014

description: Hybridized to 250K_Sty


title: c HDMEC/BT549 co-culture 1

description:
Simple annotation: Cell-line, co-culture
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67591.gif


title: GIST primary pGIST03-893

description: Hybridized to 250K_Sty


title: GIST primary pGIST06-012

description: Hybridized to 250K_Sty


title: c HUVEC/T47D co-culture 1

description:
Simple annotation: Cell-line, co-culture
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67573.gif

source_name: stratagene human  reference


title: GIST primary pGIST07-002A

description: Hybridized to 250K_Sty


title: GIST primary pGIST06-009

description: Hybridized to 250K_Sty


title: GIST primary pGIST06-007

description: Hybridized to 250K_Sty


title: GIST primary pGIST01-1029

description: Hybridized to 250K_Sty


title: GIST cell line GIST882

description: Hybridized to 250K_Sty


title: c MDA-MB-231

description:
Simple annotation: Cell-line, Control experiment
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67563.gif


title: GIST cell line GIST882X

description: Hybridized to 250K_Sty


title: GIST cell line GIST522p23

description: Hybridized to 250K_Sty


title: GIST cell line GIST430p65

description: Hybridized to 250K_Sty


title: Thyroid primary 12041B Tum.

description: Hybridized to 250K_Sty

value: Thyroid primary


title: Thyroid primary 14857E TUM_02

description: Hybridized to 250K_Sty


title: GIST cell line GIST62p50

description: Hybridized to 250K_Sty


title: Thyroid cell line TH6

description: Hybridized to 250K_Sty

value: Thyroid cell line


title: Thyroid primary 12877A Tum.

description: Hybridized to 250K_Sty


title: Thyroid cell line TH1

description: Hybridized to 250K_Sty


title: Thyroid primary 12497A TUM

description: Hybridized to 250K_Sty


title: Thyroid primary 14062 A-Tum.

description: Hybridized to 250K_Sty


title: Thyroid primary 14011A

description: Hybridized to 250K_Sty


title: Thyroid primary 12543delta Tum.

description: Hybridized to 250K_Sty

source_name: 12543delta Tum.


title: GIST primary GIST136

description: Hybridized to 250K_Sty


title: GIST cell line GIST48Ap86

description: Hybridized to 250K_Sty


title: Thyroid cell line TH5_redo

description: Hybridized to 250K_Sty


title: Thyroid cell line TH17

description: Hybridized to 250K_Sty


title: Thyroid cell line TH15

description: Hybridized to 250K_Sty


title: Thyroid cell line TH10

description: Hybridized to 250K_Sty


title: Renal primary RCC 81T

description: Hybridized to 250K_Sty

source_name: RCC 81T

value: Renal primary


title: Thyroid cell line TH13

description: Hybridized to 250K_Sty


title: Dedifferentiated liposarcoma primary PL134_03

description: Hybridized to 250K_Sty

value: Dedifferentiated liposarcoma


title: Thyroid primary 373 TUM

description: Hybridized to 250K_Sty

source_name: 373 TUM


title: Thyroid cell line TH16

description: Hybridized to 250K_Sty


title: Thyroid cell line TH7 redissection_02

description: Hybridized to 250K_Sty

source_name: TH7 redissection_02

value: TH7 redissection


title: Renal primary RCC 13T

description: Hybridized to 250K_Sty

source_name: RCC 13T


title: Renal primary RCCT 003-T3B

description: Hybridized to 250K_Sty

source_name: RCCT 003-T3B


title: Renal primary RCC 116T

description: Hybridized to 250K_Sty

source_name: RCC 116T


title: Renal primary RCCT 189-T

description: Hybridized to 250K_Sty

source_name: RCCT 189-T


title: Renal primary RCC 77T

description: Hybridized to 250K_Sty

source_name: RCC 77T


title: Renal cell line 786-0_Hahn

description: Hybridized to 250K_Sty

value: Renal cell line


title: Prostate primary CAPT 914-4

description: Hybridized to 250K_Sty

value: Prostate primary


title: Renal primary PRCC 3023

description: Hybridized to 250K_Sty

source_name: PRCC 3023


title: Renal primary RCCT 033-1

description: Hybridized to 250K_Sty


title: Renal primary RCC 29T

description: Hybridized to 250K_Sty

source_name: RCC 29T


title: Thyroid cell line TH2

description: Hybridized to 250K_Sty


title: Renal primary RCCT 373-T4A1

description: Hybridized to 250K_Sty

source_name: RCCT 373-T4A1


title: Prostate primary CAPT 911-6

description: Hybridized to 250K_Sty


title: Prostate primary CAPT 887-8

description: Hybridized to 250K_Sty


title: Prostate primary CAPT 333-3

description: Hybridized to 250K_Sty


title: Prostate primary CAPT 549-3

description: Hybridized to 250K_Sty


title: Prostate primary CAPT 139-3

description: Hybridized to 250K_Sty


title: Prostate primary CAPT 922-4

description: Hybridized to 250K_Sty


title: Prostate primary CAPT 1117-7_02

description: Hybridized to 250K_Sty


title: Prostate primary CAPT 152-3_02

description: Hybridized to 250K_Sty


title: Renal cell line SLR 26

description: Hybridized to 250K_Sty

source_name: SLR 26

value: SLR 26


title: Prostate primary CAPT539-3

description: Hybridized to 250K_Sty


title: Prostate primary WA 18-7

description: Hybridized to 250K_Sty


title: Renal primary UT03 0064 #31_redo

description: Hybridized to 250K_Sty


title: Prostate primary CAPT 490-3_02

description: Hybridized to 250K_Sty


title: Thyroid primary 238 TUM

description: Hybridized to 250K_Sty

source_name: 238 TUM


title: Renal primary UT03 0538 #7_02_redo

description: Hybridized to 250K_Sty


title: Prostate primary WA 17-6

description: Hybridized to 250K_Sty


title: Prostate primary CAPT 584-6

description: Hybridized to 250K_Sty


title: c HDMEC/SKBR-3 co-culture 2

description:
Simple annotation: Cell-line, co-culture
Image: http://smd.stanford.edu/MicroArray/gifs/2006-03/67599.gif

source_name: stratagene universal reference

value: Stratagene Universal reference; pooled from 11 cell lines

value: co-culture


title: Prostate primary WAF 24-29_02

description: Hybridized to 250K_Sty


title: Prostate primary 97-201 J

description: Hybridized to 250K_Sty


title: Prostate primary 98-372 L

description: Hybridized to 250K_Sty


title: Prostate primary 99-069 G1

description: Hybridized to 250K_Sty


title: Renal primary UT04 142 #5_02_redo

description: Hybridized to 250K_Sty


title: Prostate primary WAF 10-43

description: Hybridized to 250K_Sty


title: Prostate primary 03-192 B3

description: Hybridized to 250K_Sty


title: Prostate primary WA 5-41

description: Hybridized to 250K_Sty


title: Prostate primary 04-101 J1_03

description: Hybridized to 250K_Sty


title: Prostate primary 98-328 H

description: Hybridized to 250K_Sty


title: Prostate primary 99-064 N

description: Hybridized to 250K_Sty


title: Prostate primary 04-050 G3

description: Hybridized to 250K_Sty


title: Prostate cell line DU-145

description: Hybridized to 250K_Sty

data_processing: Probe-level signal intensities were normalized to a common reference array using quantile normalization and combined to form SNP-level signal intensities using the dChip model-based expression (PM/MM) method . Genome-wide copy number estimates were obtained using tangent normalization, in which tumor signal intensities are divided by signal intensities from the linear combination of all normal samples that is most similar to the tumor (as described in Beroukhim et al, In Press; and Getz et al., In Preparation). Cancer samples were normalized against a pool of 1,480 reference samples derived from multiple studies; the code and reference data necessary to replicate this analysis are available for download in GEO. Genotype Call (SNP call) are provided in .CHP.TXT files: AA, AB, BB, NC, and NoCall.

value: Prostate cell line


title: Prostate primary 98-388 I

description: Hybridized to 250K_Sty


title: Prostate primary 99-090 B13

description: Hybridized to 250K_Sty


title: Prostate cell line PC3_Hahn

description: Hybridized to 250K_Sty


title: Prostate primary 00-090 B2

description: Hybridized to 250K_Sty


title: Ovarian primary BCR-Test-01-056-CP

description: Hybridized to 250K_Sty

value: Ovarian primary


title: Ovarian primary BCR-Test-01-082-CP

description: Hybridized to 250K_Sty


title: Prostate primary 99-091 C

description: Hybridized to 250K_Sty


title: Prostate primary CAPT 906-2

description: Hybridized to 250K_Sty


title: Prostate primary CAPT 909-6

description: Hybridized to 250K_Sty


title: Prostate primary 00-010K

description: Hybridized to 250K_Sty


title: Prostate cell line NCI-H660

description: Hybridized to 250K_Sty


title: Ovarian primary BCR-Test-01-075-CP

description: Hybridized to 250K_Sty


title: Ovarian primary BCR-Test-01-CL1-CP

description: Hybridized to 250K_Sty


title: Ovarian primary BCR-Test-01-053-CP

description: Hybridized to 250K_Sty


title: Prostate cell line LNCaP_Hahn

description: Hybridized to 250K_Sty

value: LNCaP


title: Ovarian primary BCR-Test-01-054-CP

description: Hybridized to 250K_Sty


title: Ovarian primary BCR-Test-01-057-CP

description: Hybridized to 250K_Sty


title: Ovarian primary BCR-Test-01-CL9-CP

description: Hybridized to 250K_Sty


title: Ovarian primary BCR-Test-01-076-CP

description: Hybridized to 250K_Sty


title: Ovarian primary BCR-Test-01-063-CP

description: Hybridized to 250K_Sty


title: Ovarian primary RCC 0001T

description: Hybridized to 250K_Sty

source_name: RCC 0001T


title: Ovarian primary BCR-Test-01-CL8-CP

description: Hybridized to 250K_Sty


title: Ovarian primary JAP OV 8T

description: Hybridized to 250K_Sty

source_name: JAP OV 8T


title: Ovarian primary BCR-Test-01-059-CP

description: Hybridized to 250K_Sty


title: Ovarian primary JAP OV 86T

description: Hybridized to 250K_Sty

source_name: JAP OV 86T


title: Ovarian primary JAP OV 42T

description: Hybridized to 250K_Sty

source_name: JAP OV 42T


title: Ovarian primary JAP OV 49T

description: Hybridized to 250K_Sty

source_name: JAP OV 49T


title: Ovarian primary JAP OV 72T

description: Hybridized to 250K_Sty

source_name: JAP OV 72T


title: Ovarian primary BCR-Test-01-061-CP

description: Hybridized to 250K_Sty


title: Ovarian primary JAP OV 33T

description: Hybridized to 250K_Sty

source_name: JAP OV 33T


title: Prostate primary 01-095 C6

description: Hybridized to 250K_Sty


title: Ovarian primary JAP OV 87T

description: Hybridized to 250K_Sty

source_name: JAP OV 87T


title: Ovarian primary JAP OV 88T

description: Hybridized to 250K_Sty

source_name: JAP OV 88T


title: Ovarian primary JAP OV 22T

description: Hybridized to 250K_Sty

source_name: JAP OV 22T


title: Ovarian primary JAP OV 85T

description: Hybridized to 250K_Sty

source_name: JAP OV 85T


title: Ovarian primary JAP OV 80T

description: Hybridized to 250K_Sty

source_name: JAP OV 80T


title: Ovarian primary JAP OV 6T

description: Hybridized to 250K_Sty

source_name: JAP OV 6T


title: Ovarian primary JAP OV 7T

description: Hybridized to 250K_Sty

source_name: JAP OV 7T


title: Ovarian primary JAP OV 74T

description: Hybridized to 250K_Sty

source_name: JAP OV 74T


title: Ovarian primary JAP OV 9T

description: Hybridized to 250K_Sty

source_name: JAP OV 9T


title: Ovarian primary JAP OV 4T

description: Hybridized to 250K_Sty

source_name: JAP OV 4T


title: Ovarian primary JAP OV 2T

description: Hybridized to 250K_Sty

source_name: JAP OV 2T


title: Prostate primary 03-077 B1

description: Hybridized to 250K_Sty


title: Ovarian primary JAP OV 64T

description: Hybridized to 250K_Sty

source_name: JAP OV 64T


title: Ovarian primary JAP OV 3T

description: Hybridized to 250K_Sty

source_name: JAP OV 3T


title: Ovarian primary JAP OV 48T

description: Hybridized to 250K_Sty

source_name: JAP OV 48T


title: Ovarian primary JAP OV 51T2_02

description: Hybridized to 250K_Sty

source_name: JAP OV 51T2_02


title: Ovarian primary JAP OV 59T

description: Hybridized to 250K_Sty

source_name: JAP OV 59T


title: Ovarian primary JAP OV 66T

description: Hybridized to 250K_Sty

source_name: JAP OV 66T


title: Ovarian primary JAP OV 60T

description: Hybridized to 250K_Sty

source_name: JAP OV 60T


title: Ovarian primary JAP OV 14T

description: Hybridized to 250K_Sty

source_name: JAP OV 14T


title: Ovarian primary JAP OV 78T

description: Hybridized to 250K_Sty

source_name: JAP OV 78T


title: Ovarian primary JAP OV 26T

description: Hybridized to 250K_Sty

source_name: JAP OV 26T


title: Ovarian primary JAP OV 39T_redo

description: Hybridized to 250K_Sty

source_name: JAP OV 39T_redo


title: Ovarian primary JAP OV 84T

description: Hybridized to 250K_Sty

source_name: JAP OV 84T


title: Ovarian primary JAP OV 77T

description: Hybridized to 250K_Sty

source_name: JAP OV 77T


title: Ovarian primary JAP OV 79T

description: Hybridized to 250K_Sty

source_name: JAP OV 79T


title: Ovarian primary JAP OV 28T

description: Hybridized to 250K_Sty

source_name: JAP OV 28T


title: Ovarian primary JAP OV 35T

description: Hybridized to 250K_Sty

source_name: JAP OV 35T


title: Ovarian primary JAP OV 44T

description: Hybridized to 250K_Sty

source_name: JAP OV 44T


title: Ovarian primary JAP OV 19T

description: Hybridized to 250K_Sty

source_name: JAP OV 19T


title: Ovarian primary JAP OV 13T

description: Hybridized to 250K_Sty

source_name: JAP OV 13T


title: Ovarian primary JAP OV 63

description: Hybridized to 250K_Sty

source_name: JAP OV 63


title: Ovarian primary JAP OV 11T

description: Hybridized to 250K_Sty

source_name: JAP OV 11T


title: Ovarian primary JAP OV 24T

description: Hybridized to 250K_Sty

source_name: JAP OV 24T


title: Ovarian primary JAP OV 41T

description: Hybridized to 250K_Sty

source_name: JAP OV 41T


title: Ovarian primary JAP OV 45T

description: Hybridized to 250K_Sty

source_name: JAP OV 45T


title: Ovarian primary JAP OV 97T

description: Hybridized to 250K_Sty

source_name: JAP OV 97T


title: Ovarian primary JAP OV 53T

description: Hybridized to 250K_Sty

source_name: JAP OV 53T


title: Ovarian primary JAP OV 56T

description: Hybridized to 250K_Sty

source_name: JAP OV 56T


title: Ovarian primary JAP OV 5T

description: Hybridized to 250K_Sty

source_name: JAP OV 5T


title: Ovarian primary JAP OV 71T

description: Hybridized to 250K_Sty

source_name: JAP OV 71T


title: Ovarian primary JAP OV 27T

description: Hybridized to 250K_Sty

source_name: JAP OV 27T


title: Ovarian primary JAP OV 20T

description: Hybridized to 250K_Sty

source_name: JAP OV 20T


title: Ovarian primary JAP OV 25T

description: Hybridized to 250K_Sty

source_name: JAP OV 25T


title: Ovarian primary JAP OV 37T

description: Hybridized to 250K_Sty

source_name: JAP OV 37T


title: Ovarian primary JAP OV 61T

description: Hybridized to 250K_Sty

source_name: JAP OV 61T


title: Ovarian primary JAP OV 55T

description: Hybridized to 250K_Sty

source_name: JAP OV 55T


title: Ovarian primary JAP OV 23T

description: Hybridized to 250K_Sty

source_name: JAP OV 23T


title: Ovarian primary JAP OV 43T

description: Hybridized to 250K_Sty

source_name: JAP OV 43T


title: Ovarian primary JAP OV 40T

description: Hybridized to 250K_Sty

source_name: JAP OV 40T


title: Ovarian primary JAP OV 58T

description: Hybridized to 250K_Sty

source_name: JAP OV 58T


title: Ovarian primary JAP OV 18T

description: Hybridized to 250K_Sty

source_name: JAP OV 18T


title: Ovarian primary JAP OV 31T

description: Hybridized to 250K_Sty

source_name: JAP OV 31T


title: Ovarian primary JAP OV 17T

description: Hybridized to 250K_Sty

source_name: JAP OV 17T


title: Ovarian primary JAP OV 36T

description: Hybridized to 250K_Sty

source_name: JAP OV 36T


title: Ovarian primary JAP OV 1T

description: Hybridized to 250K_Sty

source_name: JAP OV 1T


title: Ovarian primary JAP OV 15T

description: Hybridized to 250K_Sty

source_name: JAP OV 15T


title: Ovarian primary JAP OV 68T

description: Hybridized to 250K_Sty

source_name: JAP OV 68T


title: Ovarian primary JAP OV 21T

description: Hybridized to 250K_Sty

source_name: JAP OV 21T


title: Ovarian primary JAP OV 29T

description: Hybridized to 250K_Sty

source_name: JAP OV 29T


title: Ovarian primary JAP OV 47T

description: Hybridized to 250K_Sty

source_name: JAP OV 47T


title: Ovarian primary JAP OV 76T

description: Hybridized to 250K_Sty

source_name: JAP OV 76T


title: Ovarian primary JAP OV 10T

description: Hybridized to 250K_Sty

source_name: JAP OV 10T


title: Ovarian primary JAP OV 67T

description: Hybridized to 250K_Sty

source_name: JAP OV 67T


title: Ovarian primary JAP OV 16T

description: Hybridized to 250K_Sty

source_name: JAP OV 16T


title: Ovarian primary JAP OV 38T

description: Hybridized to 250K_Sty

source_name: JAP OV 38T


title: Ovarian primary JAP OV 12T

description: Hybridized to 250K_Sty

source_name: JAP OV 12T


title: Ovarian primary JAP OV 92T

description: Hybridized to 250K_Sty

source_name: JAP OV 92T


title: Ovarian primary JAP OV 75T

description: Hybridized to 250K_Sty

source_name: JAP OV 75T


title: Ovarian primary JAP OV 32T

description: Hybridized to 250K_Sty

source_name: JAP OV 32T


title: Synovial sarcoma cell line SYO-1

description: Hybridized to 250K_Sty

value: Synovial sarcoma cell line


title: Ovarian primary JAP OV 30T

description: Hybridized to 250K_Sty

source_name: JAP OV 30T


title: Ovarian primary JAP OV 52T

description: Hybridized to 250K_Sty

source_name: JAP OV 52T


title: Ovarian primary JAP OV 46T

description: Hybridized to 250K_Sty

source_name: JAP OV 46T


title: Ovarian primary JAP OV 65T

description: Hybridized to 250K_Sty

source_name: JAP OV 65T


title: Schwannoma primary SBS9

description: Hybridized to 250K_Sty

value: Schwannoma primary


title: Ovarian primary JAP OV 73T

description: Hybridized to 250K_Sty

source_name: JAP OV 73T


title: Synovial sarcoma cell line HSSYII

description: Hybridized to 250K_Sty

source_name: HSSYII

value: HSSYII


title: Synovial sarcoma primary S05-3685

description: Hybridized to 250K_Sty

value: Synovial sarcoma primary


title: Synovial sarcoma cell line Fuji

description: Hybridized to 250K_Sty

source_name: Fuji

value: Fuji


title: Schwannoma primary SBS6

description: Hybridized to 250K_Sty


title: Synovial sarcoma primary TB-106663

description: Hybridized to 250K_Sty


title: Schwannoma primary SBS2

description: Hybridized to 250K_Sty


title: Schwannoma primary SBS1

description: Hybridized to 250K_Sty


title: Ovarian primary SK-12HL_9A

description: Hybridized to 250K_Sty


title: Sarcoma NOS cell line LS14

description: Hybridized to 250K_Sty

value: Sarcoma NOS cell line


title: Sarcoma NOS primary LPS-HW

description: Hybridized to 250K_Sty

source_name: LPS-HW

value: Sarcoma NOS primary


title: Myelodysplasia primary MDS_Rush_25

description: Hybridized to 250K_Sty

value: Myelodysplasia primary


title: Myeloid leukemia NOS cell line MV411

description: Hybridized to 250K_Sty

value: Myeloid leukemia NOS cell line


title: Myelodysplasia primary MDS_Rush_07

description: Hybridized to 250K_Sty


title: Myelodysplasia primary MDS_5q_9_redo

description: Hybridized to 250K_Sty


title: Ovarian primary JAP OV 54T

description: Hybridized to 250K_Sty

source_name: JAP OV 54T


title: Myelodysplasia primary MDS_5q_6

description: Hybridized to 250K_Sty


title: Myelodysplasia primary MDS-RA-13

description: Hybridized to 250K_Sty


title: Myelodysplasia primary MDS_5q_8

description: Hybridized to 250K_Sty


title: Myelodysplasia primary MDS_Rush_40_redo

description: Hybridized to 250K_Sty


title: Myelodysplasia primary MDS_5q_3

description: Hybridized to 250K_Sty


title: Myelodysplasia primary MDS_5q_5

description: Hybridized to 250K_Sty


title: Meningioma primary SBM9

description: Hybridized to 250K_Sty

value: Meningioma primary


title: Myelodysplasia primary MDS_5q_4

description: Hybridized to 250K_Sty


title: Myelodysplasia primary MDS_5q_15

description: Hybridized to 250K_Sty


title: Myelodysplasia primary MDS_5q_17

description: Hybridized to 250K_Sty


title: Myelodysplasia primary MDS_5q_11

description: Hybridized to 250K_Sty


title: Myelodysplasia primary MDS_5q_12

description: Hybridized to 250K_Sty


title: Myelodysplasia primary MDS_5q_13

description: Hybridized to 250K_Sty


title: Myelodysplasia primary MDS_5q_2

description: Hybridized to 250K_Sty


title: Myelodysplasia primary MDS_5q_18

description: Hybridized to 250K_Sty


title: Schwannoma primary SBS7

description: Hybridized to 250K_Sty


title: Meningioma primary SBM5

description: Hybridized to 250K_Sty


title: Myelodysplasia primary MDS_5q_10

description: Hybridized to 250K_Sty


title: Meningioma primary SBM4

description: Hybridized to 250K_Sty


title: Meningioma primary SBM10

description: Hybridized to 250K_Sty


title: Meningioma primary SBM2

description: Hybridized to 250K_Sty


title: Lung SC primary S003620T

description: Hybridized to 250K_Sty

value: Lung SC primary


title: Lung SC primary S003623T

description: Hybridized to 250K_Sty


title: Lung SC primary S003624T

description: Hybridized to 250K_Sty


title: Lung SC primary S003621T

description: Hybridized to 250K_Sty


title: Lung SC primary S003622T

description: Hybridized to 250K_Sty


title: Lung SC primary S003625T

description: Hybridized to 250K_Sty


title: Lung SC primary S003626T

description: Hybridized to 250K_Sty


title: Meningioma primary SBM1

description: Hybridized to 250K_Sty


title: Lung SC primary S003618T

description: Hybridized to 250K_Sty


title: Lung SC primary S003616T_redo

description: Hybridized to 250K_Sty


title: Lung SC primary S003612T_redo

description: Hybridized to 250K_Sty


title: Lung SC primary S003609T

description: Hybridized to 250K_Sty


title: Lung SC primary S003608T

description: Hybridized to 250K_Sty


title: Lung SC primary S003610T

description: Hybridized to 250K_Sty


title: Lung SC primary S003615T

description: Hybridized to 250K_Sty


title: Lung SC primary S003613T

description: Hybridized to 250K_Sty


title: Lung SC primary S003630T

description: Hybridized to 250K_Sty


title: Leukemia NOS cell line MONOMAC1

description: Hybridized to 250K_Sty

value: Leukemia NOS cell line


title: Lung SC primary S003611T

description: Hybridized to 250K_Sty


title: Lung SC cell line H82

description: Hybridized to 250K_Sty

value: Lung SC cell line


title: Myelodysplasia primary MDS_Rush_01

description: Hybridized to 250K_Sty


title: Leukemia NOS cell line SKM1

description: Hybridized to 250K_Sty


title: Liposarcoma NOS cell line SW872

description: Hybridized to 250K_Sty

value: Liposarcoma NOS cell line


title: Leukemia NOS cell line OCIAML3

description: Hybridized to 250K_Sty


title: Leukemia NOS cell line OCIAML2

description: Hybridized to 250K_Sty


title: Lung SC cell line H187

description: Hybridized to 250K_Sty


title: Liposarcoma NOS cell line LiSa-2

description: Hybridized to 250K_Sty


title: Leukemia NOS cell line F36P

description: Hybridized to 250K_Sty


title: Leukemia NOS cell line MOLM13

description: Hybridized to 250K_Sty


title: Esophageal squamous cell line TE7

description: Hybridized to 250K_Sty

value: Esophageal squamous cell line


title: Esophageal squamous primary 1731

description: Hybridized to 250K_Sty

value: Esophageal squamous primary


title: Leukemia NOS cell line K562

description: Hybridized to 250K_Sty


title: Esophageal squamous cell line HCE4

description: Hybridized to 250K_Sty


title: Chronic myeloid leukemia cell line MEG01

description: Hybridized to 250K_Sty

value: Chronic myeloid leukemia cell line


title: Leukemia NOS cell line HL60

description: Hybridized to 250K_Sty


title: Acute myeloid leukemia cell line THP-1

description: Hybridized to 250K_Sty

value: Acute myeloid leukemia cell line


title: Acute myeloid leukemia cell line NOMO-1

description: Hybridized to 250K_Sty


title: Acute lymphoblastic leukemia cell line Reh

description: Hybridized to 250K_Sty

source_name: Reh

value: Acute lymphoblastic leukemia cell line

value: Reh


title: Acute myeloid leukemia cell line ML2

description: Hybridized to 250K_Sty


title: Leiomyosarcoma cell line LMS05p13

description: Hybridized to 250K_Sty

value: Leiomyosarcoma cell line


title: Leukemia NOS cell line HEL

description: Hybridized to 250K_Sty

source_name: HEL

value: HEL


title: Endometrial primary BCR-Test-01-080-CP

description: Hybridized to 250K_Sty

value: Endometrial primary


title: Acute lymphoblastic leukemia cell line SUPT1

description: Hybridized to 250K_Sty


title: Esophageal squamous primary 1733

description: Hybridized to 250K_Sty


title: Melanoma primary ML 310

description: Hybridized to 250K_Sty

value: Melanoma primary


title: Melanoma cell line Mel280

description: Hybridized to 250K_Sty

value: Melanoma cell line


title: Melanoma cell line Mel252

description: Hybridized to 250K_Sty


title: Acute leukemia NOS cell line KASUMI1

description: Hybridized to 250K_Sty

value: Acute leukemia NOS cell line


title: Melanoma cell line M970131

description: Hybridized to 250K_Sty


title: Melanoma cell line WM 1942

description: Hybridized to 250K_Sty


title: Melanoma cell line M970130

description: Hybridized to 250K_Sty


title: Melanoma cell line WM 3451

description: Hybridized to 250K_Sty


title: Acute leukemia NOS cell line U937

description: Hybridized to 250K_Sty


title: Melanoma cell line Mel259

description: Hybridized to 250K_Sty


title: Melanoma cell line M970109

description: Hybridized to 250K_Sty


title: Melanoma cell line M951019

description: Hybridized to 250K_Sty


title: Melanoma cell line Mel258

description: Hybridized to 250K_Sty


title: Melanoma cell line M961121

description: Hybridized to 250K_Sty


title: Melanoma cell line Mel205

description: Hybridized to 250K_Sty


title: Melanoma cell line M960724

description: Hybridized to 250K_Sty


title: Melanoma cell line M960514

description: Hybridized to 250K_Sty


title: Acute lymphoblastic leukemia cell line Jurkat

description: Hybridized to 250K_Sty

source_name: Jurkat

value: Jurkat


title: Melanoma cell line M010816

description: Hybridized to 250K_Sty


title: Melanoma cell line M950322

description: Hybridized to 250K_Sty


title: Melanoma cell line M970805

description: Hybridized to 250K_Sty


title: Melanoma cell line M010726

description: Hybridized to 250K_Sty


title: Melanoma cell line M951010

description: Hybridized to 250K_Sty


title: Melanoma cell line M950504

description: Hybridized to 250K_Sty


title: Melanoma cell line M960704

description: Hybridized to 250K_Sty


title: Melanoma cell line M950803

description: Hybridized to 250K_Sty


title: Melanoma cell line M010513

description: Hybridized to 250K_Sty


title: Melanoma cell line M010226

description: Hybridized to 250K_Sty


title: Melanoma cell line M010320

description: Hybridized to 250K_Sty


title: Melanoma cell line M010723

description: Hybridized to 250K_Sty


title: Melanoma cell line M000907

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS111

description: Hybridized to 250K_Sty

value: Medulloblastoma primary


title: Melanoma cell line M010912

description: Hybridized to 250K_Sty


title: Melanoma cell line M001018

description: Hybridized to 250K_Sty


title: Medulloblastoma primary T99-192

description: Hybridized to 250K_Sty


title: Melanoma cell line M010419

description: Hybridized to 250K_Sty


title: Melanoma cell line M010122

description: Hybridized to 250K_Sty


title: Medulloblastoma primary SJ-1

description: Hybridized to 250K_Sty


title: Melanoma cell line M000310

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS053

description: Hybridized to 250K_Sty


title: Medulloblastoma primary T99-148

description: Hybridized to 250K_Sty


title: Medulloblastoma primary T98-74

description: Hybridized to 250K_Sty


title: Medulloblastoma primary 2004 07 P0312T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary T99-202

description: Hybridized to 250K_Sty


title: Melanoma cell line M010220

description: Hybridized to 250K_Sty


title: Medulloblastoma primary T00-39

description: Hybridized to 250K_Sty


title: Medulloblastoma primary SJ-8

description: Hybridized to 250K_Sty


title: Medulloblastoma primary SJ-5

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-069T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS009_02

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS015

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-452T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS087

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS103

description: Hybridized to 250K_Sty


title: Medulloblastoma primary T99-114

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS145

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS065

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS114

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-913T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS152

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS146

description: Hybridized to 250K_Sty


title: Medulloblastoma primary T97-23

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-042

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS086

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS138

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-022T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-546

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS142

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS144

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS129

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-226

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS133

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-328

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS148

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS131_02

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-544

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS140

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-236T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS151_redo

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS141

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS153

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS136

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS108

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-113T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-883

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-427T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-413

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS107

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-079_02

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS072

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS128

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS127_02

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-284T_redo

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS154

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS088

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-126T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-550

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS062_02_redo

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS137

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS090

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-501

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-687

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS093

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-408T_03

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-575

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-682

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS-163T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-699T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-923T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-439T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-510T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-321T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-719

description: Hybridized to 250K_Sty


title: Medulloblastoma primary 2006 07 P0223T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS046

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS008

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS-161T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS035

description: Hybridized to 250K_Sty


title: Medulloblastoma primary 2006 06 P0502

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS123T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS013

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS055n2

description: Hybridized to 250K_Sty


title: Medulloblastoma primary 2005 10 P0416

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-161T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-402PT

description: Hybridized to 250K_Sty


title: Medulloblastoma primary 2006 05 P0969T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS023

description: Hybridized to 250K_Sty


title: Medulloblastoma primary ATRT 111006

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS-175T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-399PT

description: Hybridized to 250K_Sty


title: Medulloblastoma primary 2006 05 P0526T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS150

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-375PT

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-589T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-533PT

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-227PT

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-159T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-485T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-164T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-876T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-360T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-103T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-355T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-004T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-379T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-178T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-668T

description: Hybridized to 250K_Sty


title: Medulloblastoma cell line CL-H341-A

description: Hybridized to 250K_Sty

value: Medulloblastoma cell line


title: Medulloblastoma cell line CL-H283-A

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS089

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-265T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-887

description: Hybridized to 250K_Sty


title: Medulloblastoma primary NS149_03

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-700PT

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-151T

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-568T-rerun

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-648T

description: Hybridized to 250K_Sty


title: Medulloblastoma cell line CL-H384-A

description: Hybridized to 250K_Sty


title: Medulloblastoma primary PO-200T

description: Hybridized to 250K_Sty


title: Medulloblastoma cell line CL-H425-A

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11XP

description: Hybridized to 250K_Sty

value: Lung NSC primary


title: Lung NSC primary SM-11XF

description: Hybridized to 250K_Sty


title: Lung NSC primary S004612T

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-125N

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11XD

description: Hybridized to 250K_Sty


title: Medulloblastoma cell line CL-H556-A

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11U6

description: Hybridized to 250K_Sty


title: Medulloblastoma cell line CL-UW402

description: Hybridized to 250K_Sty


title: Medulloblastoma cell line CL-DAOY-A

description: Hybridized to 250K_Sty

source_name: CL-DAOY-A

value: CL-DAOY-A


title: Lung NSC primary SM-11XC

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-125K

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11U4

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11UD

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11TF

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11XE

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11U3

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11XX

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11XW

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11XK

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11XJ

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11TX

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11XM

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11TY

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-124G

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11TM

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-124N

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-124O

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-124Q

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-124D

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11TW

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-1253

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11ZP

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-124E

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11TJ

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11XL

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11ZQ

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11XY

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-1251

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-1242

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11ZR

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-124B

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11Z5

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11ZE

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-1257

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-124V

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11ZG

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11Z3

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-124M

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-124I

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-124A

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11U8

description: Hybridized to 250K_Sty


title: Lung NSC primary 17758_redo

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-123X

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-1246

description: Hybridized to 250K_Sty


title: Lung NSC primary 16893_redo

description: Hybridized to 250K_Sty


title: Lung NSC primary 17160_redo

description: Hybridized to 250K_Sty


title: Lung NSC primary BCR-Test-01-047-CP

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11YX

description: Hybridized to 250K_Sty


title: Lung NSC primary 16656_redo

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11YW

description: Hybridized to 250K_Sty


title: Lung NSC primary 16843_redo

description: Hybridized to 250K_Sty


title: Lung NSC primary 16859_redo

description: Hybridized to 250K_Sty


title: Lung NSC primary BCR-Test-01-045-CP

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-124L

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12WL

description: Hybridized to 250K_Sty


title: Lung NSC primary BCR-Test-01-040-CP

description: Hybridized to 250K_Sty


title: Lung NSC primary BCR-Test-01-038-CP

description: Hybridized to 250K_Sty


title: Lung NSC primary 16762_redo

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12WB

description: Hybridized to 250K_Sty


title: Lung NSC primary BCR-Test-01-042-CP

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11ZW

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12WK

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12W8

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12WA

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12W9

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12W6

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12VT

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-126E

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12VY

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12VX

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-126B

description: Hybridized to 250K_Sty


title: Lung NSC primary BCR-Test-01-065-CP

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12VV

description: Hybridized to 250K_Sty


title: Lung NSC primary BCR-Test-01-077-CP

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-126F

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-1262

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-1265

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-1263

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-125Y

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12VU

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-1269

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-125U

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-125X

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12W4

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12W5

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12W1

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12W3

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-126I

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12VZ

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12WC

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12W2

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-126C

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-126A

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11T3

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11SR

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11SW

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11SP

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-1266

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11T6

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11T4

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11SS

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11SC

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11SZ

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11T1

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12WF

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11SG

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11SY

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11SV

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11SL

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12WE

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11SM

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11SK

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11SU

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11SI

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11S7

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11SB

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy65T

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy21T_redo

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy61T

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11SX

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy4T

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy86T

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11SA

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy70T

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy68T

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy5T

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy77T

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy22T

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy36T

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11YS

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy1T

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11YP

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy28T

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11YQ

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy34T

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy7T

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy10T

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy31T

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11YR

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11Y2

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11Y5

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11XZ

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11YG

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11YH

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11YK

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy99T

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11YJ

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11YM

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy37T

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11YO

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11YB

description: Hybridized to 250K_Sty


title: Lung NSC primary 00-53T

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11YL

description: Hybridized to 250K_Sty


title: Lung NSC primary 00-50T

description: Hybridized to 250K_Sty


title: Lung NSC primary 00-61T

description: Hybridized to 250K_Sty


title: Lung NSC primary 2004-38T

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-11YA

description: Hybridized to 250K_Sty


title: Lung NSC primary 00-21T

description: Hybridized to 250K_Sty


title: Lung NSC primary 02-18T

description: Hybridized to 250K_Sty


title: Lung NSC primary 00-20T

description: Hybridized to 250K_Sty


title: Lung NSC primary 99-23T

description: Hybridized to 250K_Sty


title: Lung NSC primary 99-55T

description: Hybridized to 250K_Sty


title: Lung NSC primary Daffy18T

description: Hybridized to 250K_Sty


title: Lung NSC primary 99-10T

description: Hybridized to 250K_Sty


title: Lung NSC primary 99-28T

description: Hybridized to 250K_Sty


title: Lung NSC primary 98-45T

description: Hybridized to 250K_Sty


title: Lung NSC primary 01-37T

description: Hybridized to 250K_Sty


title: Lung NSC primary 00-7T

description: Hybridized to 250K_Sty


title: Lung NSC primary 99-53T

description: Hybridized to 250K_Sty


title: Lung NSC primary 00-1T

description: Hybridized to 250K_Sty


title: Lung NSC primary 98-49T

description: Hybridized to 250K_Sty


title: Lung NSC primary 99-35T

description: Hybridized to 250K_Sty


title: Lung NSC primary 99-8T

description: Hybridized to 250K_Sty


title: Lung NSC primary 00-3T

description: Hybridized to 250K_Sty


title: Lung NSC primary 99-5T

description: Hybridized to 250K_Sty


title: Lung NSC primary 98-63T

description: Hybridized to 250K_Sty


title: Lung NSC primary 03-50T

description: Hybridized to 250K_Sty


title: Lung NSC primary 99-32T

description: Hybridized to 250K_Sty


title: Lung NSC primary 97-47T

description: Hybridized to 250K_Sty


title: Lung NSC primary 97-33T

description: Hybridized to 250K_Sty


title: Lung NSC primary 97-31T

description: Hybridized to 250K_Sty


title: Lung NSC primary 97-11T

description: Hybridized to 250K_Sty


title: Lung NSC primary 98-61T

description: Hybridized to 250K_Sty


title: Lung NSC primary 97-53T

description: Hybridized to 250K_Sty


title: Lung NSC primary 97-1T

description: Hybridized to 250K_Sty


title: Lung NSC primary S004169T

description: Hybridized to 250K_Sty


title: Lung NSC primary 97-16T

description: Hybridized to 250K_Sty


title: Lung NSC primary 98-52T

description: Hybridized to 250K_Sty


title: Lung NSC primary S004169T_redo

description: Hybridized to 250K_Sty


title: Lung NSC primary 97-23T

description: Hybridized to 250K_Sty


title: Lung NSC primary 98-42T

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12X8

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12WV

description: Hybridized to 250K_Sty


title: Lung NSC primary 2005-47T

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12YB

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12WZ

description: Hybridized to 250K_Sty


title: Lung NSC primary S004324T_02

description: Hybridized to 250K_Sty


title: Lung NSC primary S004356T_02

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12YI

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12Y2

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12Y3

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12YE

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12YG

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12XL

description: Hybridized to 250K_Sty


title: Hepatocellular primary 17603

description: Hybridized to 250K_Sty

value: Hepatocellular primary


title: Lung NSC cell line H23

description: Hybridized to 250K_Sty

value: Lung NSC cell line


title: Lung NSC primary SM-11RT

description: Hybridized to 250K_Sty


title: Hepatocellular primary 16486

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12X6

description: Hybridized to 250K_Sty


title: Hepatocellular primary 17742

description: Hybridized to 250K_Sty


title: Hepatocellular cell line SNU_387

description: Hybridized to 250K_Sty

value: Hepatocellular cell line

value: SNU


title: Hepatocellular primary 12766

description: Hybridized to 250K_Sty


title: Lung NSC primary S004289T

description: Hybridized to 250K_Sty


title: Hepatocellular primary 10918

description: Hybridized to 250K_Sty


title: Hepatocellular cell line SK_HEP_1

description: Hybridized to 250K_Sty

value: SK


title: Hepatocellular cell line SNU-449

description: Hybridized to 250K_Sty


title: Lung NSC cell line H1355_redo

description: Hybridized to 250K_Sty


title: Hepatocellular primary 13145

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12XA

description: Hybridized to 250K_Sty


title: Hepatocellular cell line Hep G2

description: Hybridized to 250K_Sty

source_name: Hep G2

value: Hep G2


title: Hepatocellular cell line SNU-398

description: Hybridized to 250K_Sty


title: Hepatocellular primary 15192

description: Hybridized to 250K_Sty


title: Hepatocellular cell line SNU-475

description: Hybridized to 250K_Sty


title: Lung NSC primary SM-12Y5

description: Hybridized to 250K_Sty


title: Lung NSC primary 97-27T

description: Hybridized to 250K_Sty


title: Lung NSC primary 98-31T

description: Hybridized to 250K_Sty


title: Hepatocellular cell line SNU-182

description: Hybridized to 250K_Sty


title: Glioma primary glioma 615

description: Hybridized to 250K_Sty

source_name: glioma 615

value: Glioma primary


title: Glioma primary glioma 622

description: Hybridized to 250K_Sty

source_name: glioma 622


title: Glioma primary glioma 611

description: Hybridized to 250K_Sty

source_name: glioma 611


title: Glioma primary glioma 628

description: Hybridized to 250K_Sty

source_name: glioma 628


title: Glioma primary glioma 624

description: Hybridized to 250K_Sty

source_name: glioma 624


title: Glioma primary glioma 627

description: Hybridized to 250K_Sty

source_name: glioma 627


title: Glioma primary glioma 625

description: Hybridized to 250K_Sty

source_name: glioma 625


title: Glioma primary glioma 616

description: Hybridized to 250K_Sty

source_name: glioma 616


title: Glioma primary glioma 626

description: Hybridized to 250K_Sty

source_name: glioma 626


title: Glioma primary glioma 621

description: Hybridized to 250K_Sty

source_name: glioma 621


title: Glioma primary glioma 620

description: Hybridized to 250K_Sty

source_name: glioma 620


title: Hepatocellular cell line HuH_7

description: Hybridized to 250K_Sty

value: HuH


title: Glioma primary glioma 613

description: Hybridized to 250K_Sty

source_name: glioma 613


title: Glioma primary glioma 617

description: Hybridized to 250K_Sty

source_name: glioma 617


title: Glioma primary glioma 619

description: Hybridized to 250K_Sty

source_name: glioma 619


title: Lung NSC primary S003619T

description: Hybridized to 250K_Sty


title: Glioma primary glioma 612

description: Hybridized to 250K_Sty

source_name: glioma 612


title: Glioma primary glioma 630

description: Hybridized to 250K_Sty

source_name: glioma 630


title: Glioma primary glioma 629

description: Hybridized to 250K_Sty

source_name: glioma 629


title: Glioma primary glioma 614

description: Hybridized to 250K_Sty

source_name: glioma 614


title: Lung NSC primary S004336T_02

description: Hybridized to 250K_Sty


title: Glioma primary glioma 623

description: Hybridized to 250K_Sty

source_name: glioma 623


title: Lung NSC primary SM-12XR

description: Hybridized to 250K_Sty


title: Glioma primary 27F

description: Hybridized to 250K_Sty


title: Glioma primary S3

description: Hybridized to 250K_Sty


title: Glioma primary 13F

description: Hybridized to 250K_Sty


title: Glioma primary 25F

description: Hybridized to 250K_Sty


title: Glioma primary 8F_redo

description: Hybridized to 250K_Sty


title: Glioma cell line U87_Hahn

description: Hybridized to 250K_Sty

value: Glioma cell line


title: Glioma cell line LN229_Hahn

description: Hybridized to 250K_Sty


title: Glioma primary SR37

description: Hybridized to 250K_Sty


title: Glioma cell line 10627_Hahn

description: Hybridized to 250K_Sty


title: Glioma primary glioma 618

description: Hybridized to 250K_Sty

source_name: glioma 618


title: Glioma primary SR39_redo

description: Hybridized to 250K_Sty


title: Colorectal cell line HCT-15_Hahn

description: Hybridized to 250K_Sty

value: Colorectal cell line


title: Breast primary 8K7Z5APD

description: Hybridized to 250K_Sty

value: Breast primary


title: Colorectal primary BCR-Test-01-084-CP

description: Hybridized to 250K_Sty

value: Colorectal primary


title: Breast primary DFD5YAWR

description: Hybridized to 250K_Sty


title: Breast primary OE45YAT5

description: Hybridized to 250K_Sty


title: Breast primary ICOW8AJB

description: Hybridized to 250K_Sty


title: Colorectal primary 43A

description: Hybridized to 250K_Sty


title: Breast primary 6ZPVVAS8

description: Hybridized to 250K_Sty


title: Glioma primary 12F_redo

description: Hybridized to 250K_Sty


title: Breast primary Q3DLMAMC

description: Hybridized to 250K_Sty


title: Colorectal primary BCR-Test-01-078-CP

description: Hybridized to 250K_Sty


title: Colorectal primary 41A

description: Hybridized to 250K_Sty


title: Colorectal primary 49A

description: Hybridized to 250K_Sty


title: Colorectal cell line HCT-116_Hahn

description: Hybridized to 250K_Sty


title: Breast primary EU4STA5E

description: Hybridized to 250K_Sty


title: Colorectal primary 9126_redo

description: Hybridized to 250K_Sty


title: Breast primary 8L6ZHABM

description: Hybridized to 250K_Sty


title: Breast primary 3HE7BAF1

description: Hybridized to 250K_Sty


title: Breast primary 7DOWRAN7

description: Hybridized to 250K_Sty


title: Colorectal primary 22T_redo

description: Hybridized to 250K_Sty


title: Breast primary GHSU6AYZ

description: Hybridized to 250K_Sty


title: Breast primary VKSMWAGZ

description: Hybridized to 250K_Sty

source_name: VKSMWAGZ


title: Breast primary KP45JAF4

description: Hybridized to 250K_Sty


title: Breast primary O3L2UAR4

description: Hybridized to 250K_Sty


title: Breast primary TDUTSAMX

description: Hybridized to 250K_Sty

source_name: TDUTSAMX


title: Breast primary YJBLOAGS

description: Hybridized to 250K_Sty

source_name: YJBLOAGS


title: Breast primary 4PCFWAZX

description: Hybridized to 250K_Sty


title: Breast primary XAQYIAAA

description: Hybridized to 250K_Sty

source_name: XAQYIAAA


title: Breast primary URLO6A3Y

description: Hybridized to 250K_Sty


title: Breast primary X2MLPAT1

description: Hybridized to 250K_Sty


title: Breast primary YUV8JAN5

description: Hybridized to 250K_Sty


title: Breast primary 8OTUTAHB

description: Hybridized to 250K_Sty


title: Breast primary 85ZCAAQC

description: Hybridized to 250K_Sty


title: Breast primary G18JAA4O

description: Hybridized to 250K_Sty


title: Breast primary EU2S9AUN

description: Hybridized to 250K_Sty


title: Breast primary V4TDQASG

description: Hybridized to 250K_Sty


title: Breast primary XGWFVA3J

description: Hybridized to 250K_Sty


title: Breast primary IDOLBAA2

description: Hybridized to 250K_Sty


title: Breast primary DACYIA1S

description: Hybridized to 250K_Sty


title: Breast primary E9X7AAJ1

description: Hybridized to 250K_Sty


title: Breast primary X2G7LA85

description: Hybridized to 250K_Sty


title: Breast primary ZTQBIAHE

description: Hybridized to 250K_Sty

source_name: ZTQBIAHE


title: Breast primary HRBSEAFC

description: Hybridized to 250K_Sty

source_name: HRBSEAFC


title: Breast primary H8CZQA6K

description: Hybridized to 250K_Sty


title: Breast primary G2ID4A5L

description: Hybridized to 250K_Sty


title: Breast primary CO8S1AKU

description: Hybridized to 250K_Sty


title: Breast primary 8YUAAAP4

description: Hybridized to 250K_Sty


title: Breast primary B1 T

description: Hybridized to 250K_Sty

source_name: B1 T


title: Breast primary B2 T

description: Hybridized to 250K_Sty

source_name: B2 T


title: Breast primary 6VMM1AI9

description: Hybridized to 250K_Sty


title: SEG50

city: New Haven

first: Wei

last: Zheng

state: CT

address: Suite 503, 300 George Street

institute: Yale University

hyb_protocol: 0.8 ug of Cy3-labelled cRNA (specific activity >10.0 pmol Cy3/ug cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 250 ul containing 1x Agilent fragmentation buffer and 2x Agilent blocking agent following the manufacturer's instructions. On completion of the fragmentation reaction, 250 ul of 2x Agilent hybridization buffer was added to the fragmentation mixture and hybridized to Agilent Yeast Gene Expression 8x15K Microarrays (design ID: 016322) for 17 hours at 65°C in a rotating Agilent hybridization oven.  After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute with 37°C GE Wash buffer 2 (Agilent), then dried immediately by brief centrifugation.

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2505B) using one color scan setting for 8x15k array slides (Scan Area 61x21.6 mm, Scan resolution 5um, Dye channel is set to Green and Green PMT is set to 100%).

data_processing: The scanned images were analyzed with Feature Extraction Software 9.1 (Agilent) using default parameters to obtain background-subtracted and spatially detrended Processed Signal intensities.

organism: Saccharomyces cerevisiae

source_name: yeast cell grown to mid-log phase (O.D. = 0.6)

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 1 ug RNA using the Amino Allyl MessageAmp™ II aRNA Amplification Kit (Ambion) according to the manufacturer's instructions.  Dye incorporation and cRNA yield were checked with the NanoDrop ND-1000 Spectrophotometer.

growth_protocol: Yeast cells were grown in 500ml YPAD medium to mid-log phase (O.D. = 0.6).

extract_protocol: Ambion Ribopure-yeast kit was used to extract total RNA from 10 ml pheromone-treated yeast cultures, or untreated cultures as control. The RNA concentration was measured using a NanoDrop system. RNA integrity was examined by Agilent Bioanalyzer, and all samples had 260/280 ratios around 2.2, and 260/230 ratios larger than 2.0.

treatment_protocol: Incubation at 30C for 30 minutes with 200rpm swirling, in the presence of 5uM alpha factor.

value: YJM789 X S96

tag: treatment

value: 5uM alpha factor

tag: treatment time

value: 30 min


title: SEG48


title: SEG47


title: Breast primary B4 T

description: Hybridized to 250K_Sty

source_name: B4 T


title: Breast cell line SKBR-3_2

description: Hybridized to 250K_Sty

value: Breast cell line


title: Breast primary G97NJAUM

description: Hybridized to 250K_Sty


title: Colorectal primary 50A

description: Hybridized to 250K_Sty


title: Breast primary MGH-T13_2

description: Hybridized to 250K_Sty


title: Breast cell line SM-126O

description: Hybridized to 250K_Sty


title: Breast primary B3 T

description: Hybridized to 250K_Sty

source_name: B3 T


title: Breast primary MGH-T16_2

description: Hybridized to 250K_Sty


title: Breast cell line ZR75-1_2

description: Hybridized to 250K_Sty


title: Breast cell line SUM149_2

description: Hybridized to 250K_Sty


title: Breast primary PMC42_2

description: Hybridized to 250K_Sty


title: SEG45


title: Breast primary MGH-T11_2

description: Hybridized to 250K_Sty


title: SEG46


title: Breast cell line UACC-812_2

description: Hybridized to 250K_Sty


title: Breast cell line SUM52_2

description: Hybridized to 250K_Sty


title: Breast primary BOT148

description: Hybridized to 250K_Sty


title: Breast primary NCSYXAIH

description: Hybridized to 250K_Sty

source_name: NCSYXAIH


title: Breast cell line UACC-893_2

description: Hybridized to 250K_Sty


title: Breast cell line UACC-3199_2

description: Hybridized to 250K_Sty


title: Breast primary MGH-T15_2

description: Hybridized to 250K_Sty


title: Breast primary BOT220

description: Hybridized to 250K_Sty


title: Breast primary MGH-T14_2

description: Hybridized to 250K_Sty


title: SEG38


title: SEG37


title: SEG36


title: Breast primary MGH-T10_2

description: Hybridized to 250K_Sty


title: SEG44


title: SEG40


title: SEG42


title: SEG35


title: SEG41


title: SEG34


title: SEG33


title: SEG31


title: SEG32


title: SEG43


title: Breast primary MGH-T18_2

description: Hybridized to 250K_Sty


title: Breast primary MGH-T8_2

description: Hybridized to 250K_Sty


title: Breast primary MGH-T4_2

description: Hybridized to 250K_Sty


title: Breast primary MGH-T3_2

description: Hybridized to 250K_Sty


title: Breast primary MGH-T1_2

description: Hybridized to 250K_Sty


title: SEG22


title: Breast primary MGH-T5_2

description: Hybridized to 250K_Sty


title: SEG28


title: SEG24


title: SEG26


title: SEG18


title: SEG21


title: Breast primary MGH-T17_2

description: Hybridized to 250K_Sty


title: Breast primary BOT354

description: Hybridized to 250K_Sty


title: Breast cell line HCC1569.1

description: Hybridized to 250K_Sty


title: Breast primary BOT461

description: Hybridized to 250K_Sty


title: SEG16


title: Breast primary BOT169

description: Hybridized to 250K_Sty


title: Breast cell line hMEC_Hahn

description: Hybridized to 250K_Sty

value: hMEC


title: Breast cell line MDA-MB-361

description: Hybridized to 250K_Sty


title: SEG25


title: Breast cell line MD-MBA-453_Hahn

description: Hybridized to 250K_Sty


title: SEG30


title: Breast cell line MCF7_Hahn

description: Hybridized to 250K_Sty


title: SEG13


title: SEG14


title: SEG15


title: Breast primary MGH-10_99-DCIS_2

description: Hybridized to 250K_Sty


title: Breast primary BOT324

description: Hybridized to 250K_Sty


title: Breast cell line HCC 1954

description: Hybridized to 250K_Sty


title: SEG12


title: SEG10


title: SEG11


title: Breast cell line T47D_Hahn

description: Hybridized to 250K_Sty


title: SEG9


title: Breast cell line SUM44

description: Hybridized to 250K_Sty


title: Breast cell line MD-MBA-231_Hahn

description: Hybridized to 250K_Sty


title: Breast cell line HCC1395

description: Hybridized to 250K_Sty


title: Breast cell line HCC1937

description: Hybridized to 250K_Sty


title: SEG8_noalpha

treatment_protocol: Incubation at 30C for 30 minutes with 200rpm swirling.

value: no alpha factor


title: Breast primary XXL7XAMG

description: Hybridized to 250K_Sty


title: Breast primary CJ7RSAS6

description: Hybridized to 250K_Sty


title: SEG8


title: Breast primary 4WTMBAWM

description: Hybridized to 250K_Sty


title: Breast primary 85KBLAUT

description: Hybridized to 250K_Sty


title: Breast primary UWK9HADV

description: Hybridized to 250K_Sty


title: SEG7


title: SEG17


title: SEG5


title: Breast cell line HCC 1143

description: Hybridized to 250K_Sty


title: S0JOY54.3 with array type wheat from Affymetrix

city: Beaucouze

first: sandrine

last: balzergue

address: Rue G. Morel

country: France

institute: INRA

description:
Changes upon polyploidization in hexaploid wheat
S0JOY54.3: is the selfed generation number 0 of the hybrid derived from Triticum turgidum cv Joyau X Aegilops tauschii spp. tauschii acc.54, biological replicate number 3.

hyb_protocol: labelled extract quantity: 15ug

scan_protocol: GCOS, Biotin:pmt voltage 570nm,650V,laser power 1

data_processing: The data were normalized with the gcrma algorithm (Irizarry et al., 2003), available in the Bioconductor package (Gentleman and Carey, 2002).

organism: Aegilops tauschii x Triticum turgidum

label_protocol: labelling Biotin direct, amplification=yes, cRNA 20 ug.

growth_protocol: whole plant - grown in 20cm pot; hygrometry:98%; photoperiod: 16h ; temperature:24°C light: 10000lux

treatment_protocol: no treatment

tag: age

tag: genotype/variation

value: hexaploid


title: mix36joy-bis with array type wheat from Affymetrix

description:
Changes upon polyploidization in hexaploid wheat
mix36joy_bis: is the hybridization values of a sample composed of equal amounts of RNA from Triticum turgidum cv Joyau and Aegilops tauschii spp. strangulata acc.36, respectively, replicate 2.


title: S0JOY54.4 with array type wheat from Affymetrix

description:
Changes upon polyploidization in hexaploid wheat
S0JOY54.4: is the selfed generation number 0 of the hybrid derived from Triticum turgidum cv Joyau X Aegilops tauschii spp. tauschii acc.54, biological replicate number 4.


title: Breast primary 9LJ7JAD9

description: Hybridized to 250K_Sty


title: S1JOY54.5 with array type wheat from Affymetrix

description:
Changes upon polyploidization in hexaploid wheat
S1JOY54.5: is the selfed generation number 1 of the hybrid derived from Triticum turgidum cv Joyau X Aegilops tauschii spp. tauschii acc.54, biological replicate number 5.


title: courtot_2bis with array type wheat from Affymetrix

description:
Changes upon polyploidization in hexaploid wheat
courtot_2: is the natural wheat species T; aestivum cv Courtot, biological replicate 2.

organism: Triticum aestivum

growth_protocol: whole plant - grown in 20cm pot, hygrometry 98%, photoperiod 16h, temperature: 24°C, light:10000 lux


title: S0JOY36.3 with array type wheat from Affymetrix

description:
Changes upon polyploidization in hexaploid wheat
S0JOY36.3: is the selfed generation number 0 of the hybrid derived from Triticum turgidum cv Joyau X Aegilops tauschii spp. strangulata acc.36, biological replicate number 3.


title: S0JOY36.9 with array type wheat from Affymetrix

description:
Changes upon polyploidization in hexaploid wheat
S0JOY36.9: is the selfed generation number 0 of the hybrid derived from Triticum turgidum cv Joyau X Aegilops tauschii spp. strangulata acc.36, biological replicate number 9.


title: Breast primary J1GNEAWF

description: Hybridized to 250K_Sty


title: JOY_1 with array type wheat from Affymetrix

description:
Changes upon polyploidization in hexaploid wheat
JOY1: is the wheat species Triticum turgidum cv Joyau, biological replicate number 1

organism: Triticum turgidum subsp. durum


title: Breast primary 4VNDJABH

description: Hybridized to 250K_Sty


title: S1JOY54.7 with array type wheat from Affymetrix

description:
Changes upon polyploidization in hexaploid wheat
S1JOY54.7: is the selfed generation number 1 of the hybrid derived from Triticum turgidum cv Joyau X Aegilops tauschii spp. tauschii acc.54, biological replicate number 7.


title: Breast primary XVG3LA5K

description: Hybridized to 250K_Sty


title: Breast primary VG7YDAZ3

description: Hybridized to 250K_Sty


title: SEG4


title: SEG2


title: SEG3


title: CCN1-treated

city: Chicago

first: Lester

middle: F

last: Lau

state: IL

address: 900 S. Ashland Avenue

department: Biochemistry and Molecular Genetics

institute: University of Illinois at Chicago

hyb_protocol: The Oligo GEArray membranes were prehybridized for 2 h at 60 degrees in 2 ml GEAhyb Hybridization Solution (SA Biosciences) and then hybridized overnight at 60 degrees with 30 microgram biotion-labeled cRNA probes. The hybridized array was washed to high stringency (0.1x SSC, 0.5% SDS, 60oC, 15 minutes). Bound cRNA probes (labeled with biotin) were detected with alkaline-phosphatase-conjugated streptavidin with a chemiluminescent substrate. The chemiluminescent signal was captured by exposing the array to X-ray films.

scan_protocol: The chemiluminescent signals were captured by exposing the array to X-ray films for 5 seconds. The hybridization signals, in the form of black spots of varying sizes on the X-ray films, were digitaized by scanning the film using a flatbed desktop scanner (Epson Perfection 1650, 600 dpi), which generated image files in grey scale in TIF format.

data_processing: The intensity of hybridization signals was quatified by processing the X-ray film images with a web-based image analysis program (GEArray Expression Analysis Suite, from SA Biosciences). Each hybridized signal was normalized against the value of GAPDH (internal control) on the same blot.

label: biotinylated-UTP

organism: Mus musculus

source_name: Total RNA from macrophage cell line I-13.35 treated for 6 hrs with purified recombinant CCN1 protein.

label_protocol: 2 microgram of total RNA was reverse-transcribed to cDNA, then amplified into biotin-labeled cRNA using the TrueLabeling-AMP 2.0 kit (from SA Biosciences at www.sabiosciences.com, Cat. # GA-030) following manufacturer's protocol.

growth_protocol: I-13.35 macrophage cells were maintained in Dulbecco's modified Eagle’s medium (DMEM, Invitrogen, Carlsbad, CA) with 1.0 mM sodium pyruvate, 10% fetal bovine serum (Intergen, Purchase, NY), and 20% LADMAC Conditioned media (providing CSF-1) at 37 °C with 10% CO2. Cells were subcultured every 3-4 days.

extract_protocol: Total RNA was extracted and purified with RNeasy Mini Kit (QIAGEN) following manufacturer protocol.

treatment_protocol: Cells near confluence were made quiescent by incubating in low serum (2% FBS) D-MEM overnight. Cells were then washed and incubated in serum-free DMEM containing 1% BSA, and stimulated with purified recombinant CCN1 (10 µg/ml) for 6 h. Control cells were incubated in serum-free DMEM containing 1% BSA without CCN1.

value: immortalized splenic macrophages

value: tlr4 mutant strain C3H/HeJ


title: mix54joy with array type wheat from Affymetrix

description:
Changes upon polyploidization in hexaploid wheat
mix54joy: is the hybridization values of a sample composed of equal amounts of RNA from Triticum turgidum cv Joyau and Aegilops tauschii spp. tauschii acc.54, respectively, replicate 1.


title: BSA-treated

source_name: Total RNA from resting macrophage cells (I-13.35) incubated in serum-free culture medium containing 1% albumin (BSA).


title: S96_noalpha


title: mix36joy with array type wheat from Affymetrix

description:
Changes upon polyploidization in hexaploid wheat
mix36joy: is the hybridization values of a sample composed of equal amounts of RNA from Triticum turgidum cv Joyau and Aegilops tauschii spp. strangulata acc.36, respectively, replicate 1.


title: squa36A_3b with array type wheat from Affymetrix

description:
Changes upon polyploidization in hexaploid wheat
Squa36A: is the wheat species Aegilops tauschii spp. strangulata, accession number 36 biological replicate number 1 (or A).

organism: Aegilops tauschii


title: JOY_2 with array type wheat from Affymetrix

description:
Changes upon polyploidization in hexaploid wheat
JOY2: is the wheat species Triticum turgidum cv Joyau, biological replicate number 2


title: HS959

description: HS959 parental line


title: SEG1


title: HS959_noalpha


title: squa36B_5j with array type wheat from Affymetrix

description:
Changes upon polyploidization in hexaploid wheat
Squa36B: is the wheat species Aegilops tauschii spp. strangulata, accession number 36, biological replicate number 2 (or B)


title: squa54a_6b with array type wheat from Affymetrix

description:
Changes upon polyploidization in hexaploid wheat
squa54_1: is the wheat species Aegilops tauschii spp. tauschii, accession number 54, biological replicate number 1.


title: squa54c_2j with array type wheat from Affymetrix

description:
Changes upon polyploidization in hexaploid wheat
squa54_2: is the wheat species Aegilops tauschii spp. tauschii, accession number 54, biological replicate number 2.


title: Breast primary 9FKJUAFG

description: Hybridized to 250K_Sty


title: Breast primary Z9EO5AZS

description: Hybridized to 250K_Sty


title: Breast primary 9X5XBAQX

description: Hybridized to 250K_Sty


title: S96

description: S96 parental line


title: D2-LV

city: Baltimore

first: Nikolai

middle: M

last: Soldatov

state: MD

address: 5600 Nathan Shock Drive

institute: National Institute on Aging, NIH

description: Labeling, hybridization, and data extraction were performed at the Gene Expression and Genomics Unit, National Institute on Aging, NIH (Baltimore, MD).

hyb_protocol: The Cy3-labeled cDNA (5 μg) was incubated at 98ºC for 2 min in the presence of 10X blocking agent (Agilent Technologies, Wilmington, DE) and mixed with 2X HI-RPM Hybridization Buffer (Agilent).  Samples were loaded on to 4x44K custom Human Ion Channel SpliceArrays (ExonHit Therapeutics, Gaithersburg, MD) and hybridized for 17 h at 65º C using Agilent Sure-Hyb chambers. Arrays were washed first at room temperature with Agilent’s Gene Expression Wash Buffer #1 and then at elevated temperature (~31º C) using Gene Expression Wash Buffer #2.

scan_protocol: The arrays were scanned using Agilent’s Microarray Scanner (Model #G2565A).

data_processing: The images were analyzed using Agilent’s Feature Extraction Software v9.5 and processed by ExonHit Therapeutics using Partek Genomics Suite. The data headings present in the raw data output (.txt) files and the algorithms used to calculate the values are explained in the Feature Extraction manual.

source_name: Human ventricular myocytes

label_protocol: Each sample was incubated in the dark at 37ºC for 1 h with 120 U Terminal Deoxynucleotidyl Transferase Recombinant Enzyme and Terminal Transferase Buffer (Promega, Madison, WI), and 2.4 nmol Cy-3 dUTP (Amersham Biosciences, Little Chalfont Buckinghamshire, England).  The samples were then denatured at 70ºC for 10 min and purified by Microcon YM-30 Filter device.

extract_protocol: Cellular RNA was extracted using the PicoPure RNA isolation kit (Arcturus). The 3'-end non-bias proportional RNA amplification was carried out using the TransPlex™ Whole Transcriptome Amplification kit (Rubicon Genomics, Ann Arbor, MI).

treatment_protocol: LLeft ventricle tissue samples were obtained from material resected from the explanted heart of an ischemic cardiomyopathy patient undergoing cardiac transplantation according to routine clinical protocols. Samples were washed in 4°C saline, immersed in Tissue-Tek OCT compound (EMS, Hatfield, Pennsylvania), flash frozen in liquid nitrogen and stored at -80˚C until use. Ventricular myocytes were identified in serial 7-8-µm thick cryostat sections using the RNA-preserving quick (10 s) staining by Eosin Y (Sigma-Aldrich, St. Louis, MO). Cells were laser-capture microdissected with the Arcturus PixCell II system and collected.

tag: disease state

value: ischemic cardiomyopathy

tag: tissue

value: left ventricle

value: myocytes

value: 50 yo

tag: gender

value: male

tag: tissue status

value: freshly resected tissue sample


title: D1_LV

treatment_protocol: Left ventricle tissue samples were obtained from material resected from the explanted heart of an ischemic cardiomyopathy patient undergoing cardiac transplantation according to routine clinical protocols. Samples were washed in 4°C saline, immersed in Tissue-Tek OCT compound (EMS, Hatfield, Pennsylvania), flash frozen in liquid nitrogen and stored at -80˚C until use. Ventricular myocytes were identified in serial 7-8-µm thick cryostat sections using the RNA-preserving quick (10 s) staining by Eosin Y (Sigma-Aldrich, St. Louis, MO). Cells were laser-capture microdissected with the Arcturus PixCell II system and collected.

value: 46 yo


title: Breast primary 8MH48APP

description: Hybridized to 250K_Sty

value: Breast primary


title: Breast primary 65DQKAKQ

description: Hybridized to 250K_Sty


title: Breast primary 1YYIUAX6

description: Hybridized to 250K_Sty


title: Breast primary 5LYQ5AGV

description: Hybridized to 250K_Sty


title: Breast primary ZF437AHY

description: Hybridized to 250K_Sty


title: H3_LV

treatment_protocol: Left ventricle samples were obtained from material resected from the heart, which was rejected from transplantation, of a healthy patient who died of brain tumor. Samples were washed in 4°C saline, immersed in Tissue-Tek OCT compound (EMS, Hatfield, Pennsylvania), flash frozen in liquid nitrogen and stored at -80˚C until use. Ventricular myocytes were identified in serial 7-8-µm thick cryostat sections using the RNA-preserving quick (10 s) staining by Eosin Y (Sigma-Aldrich, St. Louis, MO). Cells were laser-capture microdissected with the Arcturus PixCell II system and collected.

value: healthy

value: 40 yo


title: mix54joy-bis with array type wheat from Affymetrix

description:
Changes upon polyploidization in hexaploid wheat
mix54joy_bis: is the hybridization values of a sample composed of equal amounts of RNA from Triticum turgidum cv Joyau and Aegilops tauschii spp. tauschii acc.54, respectively, replicate 2.


title: Breast primary K4IVVABB

description: Hybridized to 250K_Sty


title: H1_LV

treatment_protocol: Left ventricle samples were obtained from material resected from the heart, which was rejected from transplantation, of a healthy patient who died of intracerebral hemorrhage. Samples were washed in 4°C saline, immersed in Tissue-Tek OCT compound (EMS, Hatfield, Pennsylvania), flash frozen in liquid nitrogen and stored at -80˚C until use. Ventricular myocytes were identified in serial 7-8-µm thick cryostat sections using the RNA-preserving quick (10 s) staining by Eosin Y (Sigma-Aldrich, St. Louis, MO). Cells were laser-capture microdissected with the Arcturus PixCell II system and collected.

value: 58 yo

value: female


title: courtotA_1b with array type wheat from Affymetrix

description:
Changes upon polyploidization in hexaploid wheat
courtot_1: is the natural wheat species T; aestivum cv Courtot, biological replicate 1


title: H2_LV

value: 70 yo


title: SEG6

value: YJM789 X S96

value: 5uM alpha factor

value: 30 min


title: H3_LAA

source_name: Human atrial myocytes

treatment_protocol: Left atrial appendage samples were obtained from material resected from the heart, which was rejected from transplantation, of a healthy patient who died of intracerebral hemorrhage. Samples were washed in 4°C saline, immersed in Tissue-Tek OCT compound (EMS, Hatfield, Pennsylvania), flash frozen in liquid nitrogen and stored at -80˚C until use. Atrial myocytes were identified in serial 7-8-µm thick cryostat sections using the RNA-preserving quick (10 s) staining by Eosin Y (Sigma-Aldrich, St. Louis, MO). Cells were laser-capture microdissected with the Arcturus PixCell II system (Arcturus, Mountain View, CA) and collected.

value: left atrial appendage


title: H1_LAA


title: H2_LAA

value: 72 yo


title: Breast primary EL35NA6H

description: Hybridized to 250K_Sty


title: D3-LAA

treatment_protocol: Left atrial appendage samples were obtained from material resected from the explanted heart of an ischemic cardiomyopathy patient undergoing cardiac transplantation according to routine clinical protocols. Samples were washed in 4°C saline, immersed in Tissue-Tek OCT compound (EMS, Hatfield, Pennsylvania), flash frozen in liquid nitrogen and stored at -80˚C until use. Atrial myocytes were identified in serial 7-8-µm thick cryostat sections using the RNA-preserving quick (10 s) staining by Eosin Y (Sigma-Aldrich, St. Louis, MO). Cells were laser-capture microdissected with the Arcturus PixCell II system (Arcturus, Mountain View, CA) and collected.

value: ischemic cardiomyopathy


title: Breast primary S97CZA6D

description: Hybridized to 250K_Sty


title: Breast primary 8KTCDA1D

description: Hybridized to 250K_Sty


title: Breast primary U8WNBABT

description: Hybridized to 250K_Sty


title: D1_LAA

value: myocytes

value: 54 yo


title: Breast primary B7 T

description: Hybridized to 250K_Sty

source_name: B7 T


title: D2-LAA

value: male


title: Ball milled aspen rep3 16813002_532

status: Public on Feb 17 2010

city: Madison

first: Dan

last: Cullen

state: WI

address: One Gifford Pinchot Dr

institute: UW/FPL

description: Ball milled aspen rep3 16813002_532

hyb_protocol: Hybridization was carried out with 6ug of labeled cDNA suspended in NimbleGen hybridization solution for 17 hours at 42°C

scan_protocol: Arrays were scanned on the Axon4000B Scanner (Molecular Dynamics) and data was extracted from the scanned image using NimbleScan v2.4.

data_processing: Quantile normalization and robust multi-array averaging (RMA) applied

organism: Rhodonia placenta

source_name: mycelium, ball milled aspen

label_protocol: One ug of each cDNA sample was amplified and labeled with 1 unit per ul of Klenow Fragment (New England BioLabs) and 1 O.D unit of Cy3 fluorophore (TriLink Biotechnologies, Inc.) for 2 hours at 37°C

growth_protocol: Six days growth in shaking flasks at room temperature.

extract_protocol: RNA was converted to double-strand cDNA and labeled with the Cy3 fluorophore sample for hybridization to the XX-array by Roche NimbleGen (Iceland).  In brief, 10ug of total RNA was incubated with 1X first strand buffer, 10 mM DTT, 0.5mM dNTPs, 100 pM oligo T7 d(T)24  primer, and 200 units of SuperScript II (Invitrogen) for 60 min at 42°C. Second strand cDNA was synthesized by incubation with 1X second strand buffer, 0.2mM dNTPs, 0.07 units per ul DNA ligase (Invitrogen), 0.27 units per ul DNA polymerase I (Invitrogen), 0.013 units per ul RNase H (Invitrogen), at 16°C for 2 hours.  Immediately following, 10 units T4 DNA polymerase (Invitrogen) was added for additional 5 minute incubation at 16°C.  Double-stranded cDNA was treated with 27ng/ul of RNase A (EpiCenter Technologies)  for 10 minutes at 37°C.  Treated cDNA was purified using an equal volume of phenol:chloroform:isoamyl alcohol (Ambion), ethanol precipitated, washed with 80% ethanol, and resuspended in 20ul water.

tag: condition

value: Ball milled aspen

tag: stain


title: Breast primary B10 T

description: Hybridized to 250K_Sty

source_name: B10 T


title: Ball milled aspen rep1 15257002_532

description: Ball milled aspen rep1 15257002_532


title: Ball milled aspen rep2 15262402_532

description: Ball milled aspen rep2 15262402_532


title: Breast primary B6 T

description: Hybridized to 250K_Sty

source_name: B6 T


title: Breast primary B9 T

description: Hybridized to 250K_Sty

source_name: B9 T


title: Corresponding_Normal_Kidney_nA9

city: Nashville

first: Kimryn

last: Rathmell

state: TN

address: 2220 Pierce Ave

department: Medicine

institute: Vanderbilt

description: Gene expression data from Human Corresponding Normal Kidney sample

hyb_protocol: Tumor sample RNA and reference RNA were hybridized on Agilent Whole Human Genome 4x44k arrays by UNC Lineberger Comprehensive Cancer Center Genomics Core

scan_protocol: Agilent gene chips were scanned on an Agilent model C scanner by UNC Lineberger Comprehensive Cancer Center Genomics Core

data_processing: Data was retrieved from the UNC Microarray Database as LOWESS normalized, log2 of processed Red/Green signal (median), filter for 70% good data (Exclude if spot is not found in either channel, spot or spot background is a non-uniform outlier, spot or spot background is a non-uniform outlier for the population, spot is not a positive and significant signal in either channel, or Ch1 and 2 lowess normalized net (median) <10). Missing data was imputed with KNN (k=10) in SAM. Data from three RNA preparation types was merged using Distance Weighted Discriminant. Each array was standard normalized (subtract the mean of the array and divide by the standard deviation).

source_name: Corresponding Normal Kidney

label_protocol: Tumor sample RNA and reference RNA was labelled using the Agilent Two-Color Microarray-Based Gene Expression Analysis v 5.2 protocol by UNC Lineberger Comprehensive Cancer Center Genomics Core.

extract_protocol:
Frozen RCCs were obtained through University of North Carolina - Chapel Hill's Tissue Procurement Facility
RNA was extracted with a Qiagen RNeasy kit.
RNA quality was determined using an Agilent LabChip Bioanalyzer. H&E was performed on tumor tissue samples to confirm clear cell or normal histopathology

tag: identifier

value: kidney

tag: histology

value: Normal

tag: biosourcetype

value: Frozen Sample

source_name: Perou lab reference RNA

value: Cancer cell lines

value: various cancer cell lines (reference)