title: Human_osteoblast_sample_#511rep2_PGE2_treated_24h


title: Human_osteoblast_sample_#509rep3_PGE2_treated_24h

status: Public on Oct 01 2010

type: RNA

city: Montreal

first: Elin

last: Grundberg

address: 740 Dr Penfield Avenue

country: Canada

institute: McGill University

hyb_protocol: Equivalent amount of cRNA (750ng) was hybridized on each array according to the standard Illumina hybridization protocol.

scan_protocol: The BeadArrays were scanned according to the standard Illumina scanning protocol using the Illumina®BeadArray Reader (version 1.7.0.44) and the BeadScan software (version 3.5.31.17122).

data_processing: The images were analyzed in Illumina®BeadStudio 3 application and raw data were outputted in txt files. The raw data was then imported to BioConductor in  R 2.5.0 using the lumi package for variance-stabilizing transformation and robust spline normalization.

label: Biotin

molecule: total RNA

organism: Homo sapiens

source_name: Primary human osteoblasts, PGE2, 24h

label_protocol: Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.

growth_protocol: The cells were grown in medium containing α-MEM supplemented with 2 mmol/l L-Glutamine, 100U/mL penicillin, 100mg/mL streptomycin, and 10% fetal bovine serum at 37°C with 5% CO2. The culture medium was changed twice weekly.

extract_protocol: RNA was extracted from cell lysates resuspended in 600µl RLT lysis buffer using the RNeasy® Mini Kit. High RNA quality was confirmed for all samples using the Agilent 2100 BioAnalyzer and the concentrations were determined using Nanodrop ND-1000. The PTH-treated samples failed in the RNA isolation experiment and thus were not included in the subsequent expression profiling experiment.

treatment_protocol: At 70-80% confluence, the cells were passaged and sub-cultured in 6-well plates (100,000 cells/well) for 12 days. The culture medium was changed twice weekly. Prior to treatment, the cells were starved for 20h by adding complete cell medium containing 0.5% fetal bovine serum. The cells were then incubated for 2h and 24h with 0.1 µg/ml of rhBMP-2 (bone morphogenetic protein 2), 100 nM of DEX (dexamethasone), 100 nM of IGF-1 (insulin-like growth factor 1), 1µM of PGE2 (prostaglandin E2), 100 nM of PTH (parathyroid hormone) (1-34), 0.1 nM of TNF-α (tumor necrosis factor alpha) 100 nM of 1.25 VitD3 (vitamin D3) and with the same concentration of vehicle, respectively. At the two time points, the cell medium was removed and the cells were harvested by adding 600µL of RLT buffer (Qiagen, GmbH, Germany). The cell lysates were homogenized by using QIAshredder (Qiagen, GmbH, Germany) homogenizers and stored in -70°C until RNA extraction.

tag: tissue

value: trabecular bone

tag: cell type

value: osteoblasts

tag: condition

value: prostaglandin E2 (PGE2)

tag: timepoint

tag: gender

value: female


title: Human_osteoblast_sample_#522rep3_PGE2_treated_24h

value: male


title: Human_osteoblast_sample_#507rep2_PGE2_treated_24h


title: Human_osteoblast_sample_#514rep1_PGE2_treated_24h


title: Human_osteoblast_sample_#508rep1_PGE2_treated_24h


title: Human_osteoblast_sample_#508rep2_PGE2_treated_24h


title: Human_osteoblast_sample_#515rep1_PGE2_treated_24h


title: Human_osteoblast_sample_#509rep1_PGE2_treated_24h


title: Human_osteoblast_sample_#513rep1_PGE2_treated_24h


title: Human_osteoblast_sample_#506rep2_PGE2_treated_24h


title: Human_osteoblast_sample_#507rep1_PGE2_treated_24h


title: Human_osteoblast_sample_#506rep1_PGE2_treated_24h


title: Human_osteoblast_sample_#648rep2_DEX_treated_24h

source_name: Primary human osteoblasts, DEX, 24h

value: dexamethasone


title: Human_osteoblast_sample_#648rep1_DEX_treated_24h


title: Human_osteoblast_sample_#632rep3_DEX_treated_24h


title: Human_osteoblast_sample_#645rep2_DEX_treated_24h


title: Human_osteoblast_sample_#642rep2_DEX_treated_24h


title: Human_osteoblast_sample_#553rep2_PGE2_treated_24h


title: Human_osteoblast_sample_#631rep1_DEX_treated_24h


title: Human_osteoblast_sample_#646rep1_DEX_treated_24h


title: Human_osteoblast_sample_#644rep2_DEX_treated_24h


title: Human_osteoblast_sample_#646rep2_DEX_treated_24h


title: Human_osteoblast_sample_#645rep1_DEX_treated_24h


title: Human_osteoblast_sample_#628rep2_DEX_treated_24h


title: Human_osteoblast_sample_#633rep3_DEX_treated_24h


title: Human_osteoblast_sample_#631rep3_DEX_treated_24h


title: Human_osteoblast_sample_#630rep1_DEX_treated_24h


title: Human_osteoblast_sample_#644rep1_DEX_treated_24h


title: Human_osteoblast_sample_#642rep1_DEX_treated_24h


title: Human_osteoblast_sample_#629rep3_DEX_treated_24h


title: Human_osteoblast_sample_#628rep3_DEX_treated_24h


title: Human_osteoblast_sample_#643rep1_DEX_treated_24h


title: Human_osteoblast_sample_#629rep2_DEX_treated_24h


title: Human_osteoblast_sample_#632rep2_DEX_treated_24h


title: Human_osteoblast_sample_#633rep2_DEX_treated_24h


title: Human_osteoblast_sample_#630rep2_DEX_treated_24h


title: Human_osteoblast_sample_#643rep2_DEX_treated_24h


title: Human_osteoblast_sample_#634rep3_DEX_treated_24h


title: Human_osteoblast_sample_#627rep3_DEX_treated_24h


title: Human_osteoblast_sample_#634rep1_DEX_treated_24h


title: Human_osteoblast_sample_#627rep1_DEX_treated_24h


title: Human_osteoblast_sample_#626rep3_DEX_treated_24h


title: Human_osteoblast_sample_#625rep3_DEX_treated_24h


title: Human_osteoblast_sample_#626rep1_DEX_treated_24h


title: Human_osteoblast_sample_#623rep2_DEX_treated_24h


title: Human_osteoblast_sample_#622rep2_DEX_treated_24h


title: Human_osteoblast_sample_#622rep3_DEX_treated_24h


title: Human_osteoblast_sample_#624rep1_DEX_treated_24h


title: Human_osteoblast_sample_#625rep2_DEX_treated_24h


title: Human_osteoblast_sample_#621rep3_DEX_treated_24h


title: Human_osteoblast_sample_#619rep3_DEX_treated_24h


title: Human_osteoblast_sample_#620rep1_DEX_treated_24h


title: Human_osteoblast_sample_#617rep3_DEX_treated_24h


title: Human_osteoblast_sample_#619rep2_DEX_treated_24h


title: Human_osteoblast_sample_#615rep1_DEX_treated_24h


title: Human_osteoblast_sample_#621rep1_DEX_treated_24h


title: Human_osteoblast_sample_#624rep2_DEX_treated_24h


title: Human_osteoblast_sample_#614rep3_DEX_treated_24h


title: Human_osteoblast_sample_#623rep3_DEX_treated_24h


title: Human_osteoblast_sample_#618rep1_DEX_treated_24h


title: Human_osteoblast_sample_#615rep3_DEX_treated_24h


title: Human_osteoblast_sample_#612rep2_DEX_treated_24h


title: Human_osteoblast_sample_#617rep2_DEX_treated_24h


title: Human_osteoblast_sample_#618rep2_DEX_treated_24h


title: Human_osteoblast_sample_#613rep3_DEX_treated_24h


title: Human_osteoblast_sample_#613rep2_DEX_treated_24h


title: Human_osteoblast_sample_#614rep2_DEX_treated_24h


title: Human_osteoblast_sample_#620rep3_DEX_treated_24h


title: Human_osteoblast_sample_#612rep1_DEX_treated_24h


title: Human_osteoblast_sample_#611rep2_DEX_treated_24h


title: Human_osteoblast_sample_#611rep3_DEX_treated_24h


title: Human_osteoblast_sample_#609rep2_DEX_treated_24h


title: Human_osteoblast_sample_#616rep1_DEX_treated_24h


title: Human_osteoblast_sample_#607rep2_DEX_treated_24h


title: Human_osteoblast_sample_#606rep1_DEX_treated_24h


title: Human_osteoblast_sample_#601rep1_DEX_treated_24h


title: Human_osteoblast_sample_#608rep2_DEX_treated_24h


title: Human_osteoblast_sample_#603rep3_DEX_treated_24h


title: Human_osteoblast_sample_#605rep2_DEX_treated_24h


title: Human_osteoblast_sample_#608rep3_DEX_treated_24h


title: Human_osteoblast_sample_#600rep2_DEX_treated_24h


title: Human_osteoblast_sample_#609rep3_DEX_treated_24h


title: Human_osteoblast_sample_#603rep2_DEX_treated_24h


title: Human_osteoblast_sample_#600rep1_DEX_treated_24h


title: Human_osteoblast_sample_#598rep3_DEX_treated_24h


title: Human_osteoblast_sample_#599rep1_DEX_treated_24h


title: Human_osteoblast_sample_#606rep3_DEX_treated_24h


title: Human_osteoblast_sample_#605rep1_DEX_treated_24h


title: Human_osteoblast_sample_#604rep3_DEX_treated_24h


title: Human_osteoblast_sample_#601rep2_DEX_treated_24h


title: Human_osteoblast_sample_#598rep1_DEX_treated_24h


title: Human_osteoblast_sample_#604rep1_DEX_treated_24h


title: Human_osteoblast_sample_#602rep2_DEX_treated_24h


title: Human_osteoblast_sample_#597rep2_DEX_treated_24h


title: Human_osteoblast_sample_#607rep1_DEX_treated_24h


title: Human_osteoblast_sample_#597rep1_DEX_treated_24h


title: Human_osteoblast_sample_#599rep3_DEX_treated_24h


title: Human_osteoblast_sample_#602rep1_DEX_treated_24h


title: Human_osteoblast_sample_#596rep2_DEX_treated_24h


title: Human_osteoblast_sample_#595rep2_DEX_treated_24h


title: Human_osteoblast_sample_#594rep2_DEX_treated_24h


title: Human_osteoblast_sample_#595rep1_DEX_treated_24h


title: Human_osteoblast_sample_#596rep1_DEX_treated_24h


title: Human_osteoblast_sample_#592rep1_DEX_treated_24h


title: Human_osteoblast_sample_#593rep3_DEX_treated_24h


title: Human_osteoblast_sample_#591rep3_DEX_treated_24h


title: Human_osteoblast_sample_#594rep3_DEX_treated_24h


title: Human_osteoblast_sample_#592rep2_DEX_treated_24h


title: Human_osteoblast_sample_#591rep2_DEX_treated_24h


title: Human_osteoblast_sample_#590rep2_DEX_treated_24h


title: Human_osteoblast_sample_#590rep3_DEX_treated_24h


title: Human_osteoblast_sample_#594rep1_DEX_treated_24h


title: Human_osteoblast_sample_#593rep2_DEX_treated_24h


title: Human_osteoblast_sample_#593rep1_DEX_treated_24h


title: Human_osteoblast_sample_#588rep3_DEX_treated_24h


title: Human_osteoblast_sample_#586rep3_DEX_treated_24h


title: Human_osteoblast_sample_#592rep3_DEX_treated_24h


title: Human_osteoblast_sample_#595rep3_DEX_treated_24h


title: Human_osteoblast_sample_#586rep2_DEX_treated_24h


title: Human_osteoblast_sample_#588rep1_DEX_treated_24h


title: Human_osteoblast_sample_#589rep3_DEX_treated_24h


title: Human_osteoblast_sample_#585rep3_DEX_treated_24h


title: Human_osteoblast_sample_#586rep1_DEX_treated_24h


title: Human_osteoblast_sample_#587rep3_DEX_treated_24h


title: Human_osteoblast_sample_#616rep2_DEX_treated_24h


title: Human_osteoblast_sample_#587rep1_DEX_treated_24h


title: Human_osteoblast_sample_#589rep2_DEX_treated_24h


title: Human_osteoblast_sample_#581rep3_DEX_treated_24h


title: Human_osteoblast_sample_#582rep1_DEX_treated_24h


title: Human_osteoblast_sample_#583rep2_DEX_treated_24h


title: Human_osteoblast_sample_#589rep1_DEX_treated_24h


title: Human_osteoblast_sample_#581rep2_DEX_treated_24h


title: Human_osteoblast_sample_#583rep1_DEX_treated_24h


title: Human_osteoblast_sample_#585rep2_DEX_treated_24h


title: Human_osteoblast_sample_#579rep1_DEX_treated_24h


title: Human_osteoblast_sample_#580rep1_DEX_treated_24h


title: Human_osteoblast_sample_#585rep1_DEX_treated_24h


title: Human_osteoblast_sample_#580rep2_DEX_treated_24h


title: Human_osteoblast_sample_#582rep3_DEX_treated_24h


title: Human_osteoblast_sample_#578rep2_DEX_treated_24h


title: Human_osteoblast_sample_#579rep2_DEX_treated_24h


title: Human_osteoblast_sample_#578rep1_DEX_treated_24h


title: Human_osteoblast_sample_#577rep2_DEX_treated_24h


title: Human_osteoblast_sample_#576rep3_DEX_treated_24h


title: Human_osteoblast_sample_#576rep2_DEX_treated_24h


title: Human_osteoblast_sample_#581rep1_DEX_treated_24h


title: Human_osteoblast_sample_#577rep3_DEX_treated_24h


title: Human_osteoblast_sample_#575rep2_DEX_treated_24h


title: Human_osteoblast_sample_#573rep1_DEX_treated_24h


title: Human_osteoblast_sample_#575rep1_DEX_treated_24h


title: Human_osteoblast_sample_#573rep3_DEX_treated_24h


title: Human_osteoblast_sample_#572rep2_DEX_treated_24h


title: Human_osteoblast_sample_#572rep1_DEX_treated_24h


title: Human_osteoblast_sample_#576rep1_DEX_treated_24h


title: Human_osteoblast_sample_#570rep1_DEX_treated_24h


title: Human_osteoblast_sample_#567rep3_DEX_treated_24h


title: Human_osteoblast_sample_#572rep3_DEX_treated_24h


title: Human_osteoblast_sample_#567rep2_DEX_treated_24h


title: Human_osteoblast_sample_#566rep3_DEX_treated_24h


title: Human_osteoblast_sample_#566rep2_DEX_treated_24h


title: Human_osteoblast_sample_#557rep2_DEX_treated_24h


title: Human_osteoblast_sample_#557rep1_DEX_treated_24h


title: Human_osteoblast_sample_#565rep3_DEX_treated_24h


title: Human_osteoblast_sample_#554rep1_DEX_treated_24h


title: Human_osteoblast_sample_#565rep1_DEX_treated_24h


title: Human_osteoblast_sample_#570rep2_DEX_treated_24h


title: Human_osteoblast_sample_#554rep3_DEX_treated_24h


title: Human_osteoblast_sample_#553rep2_DEX_treated_24h


title: Human_osteoblast_sample_#554rep2_DEX_treated_24h


title: Human_osteoblast_sample_#555rep2_DEX_treated_24h


title: Human_osteoblast_sample_#555rep1_DEX_treated_24h


title: Human_osteoblast_sample_#553rep1_DEX_treated_24h


title: Human_osteoblast_sample_#565rep2_DEX_treated_24h


title: Human_osteoblast_sample_#551rep1_DEX_treated_24h


title: Human_osteoblast_sample_#567rep1_DEX_treated_24h


title: Human_osteoblast_sample_#551rep2_DEX_treated_24h


title: Human_osteoblast_sample_#550rep2_DEX_treated_24h


title: Human_osteoblast_sample_#548rep3_DEX_treated_24h


title: Human_osteoblast_sample_#548rep1_DEX_treated_24h


title: Human_osteoblast_sample_#550rep1_DEX_treated_24h


title: Human_osteoblast_sample_#548rep2_DEX_treated_24h


title: Human_osteoblast_sample_#543rep2_DEX_treated_24h


title: Human_osteoblast_sample_#570rep3_DEX_treated_24h


title: Human_osteoblast_sample_#541rep2_DEX_treated_24h


title: Human_osteoblast_sample_#550rep3_DEX_treated_24h


title: Human_osteoblast_sample_#541rep3_DEX_treated_24h


title: Human_osteoblast_sample_#546rep3_DEX_treated_24h


title: Human_osteoblast_sample_#537rep1_DEX_treated_24h


title: Human_osteoblast_sample_#540rep2_DEX_treated_24h


title: Human_osteoblast_sample_#541rep1_DEX_treated_24h


title: Human_osteoblast_sample_#537rep3_DEX_treated_24h


title: Human_osteoblast_sample_#540rep1_DEX_treated_24h


title: Human_osteoblast_sample_#535rep1_DEX_treated_24h


title: Human_osteoblast_sample_#531rep1_DEX_treated_24h


title: Human_osteoblast_sample_#534rep1_DEX_treated_24h


title: Human_osteoblast_sample_#535rep2_DEX_treated_24h


title: Human_osteoblast_sample_#543rep1_DEX_treated_24h


title: Human_osteoblast_sample_#536rep2_DEX_treated_24h


title: Human_osteoblast_sample_#534rep2_DEX_treated_24h


title: Human_osteoblast_sample_#529rep3_DEX_treated_24h


title: Human_osteoblast_sample_#546rep2_DEX_treated_24h


title: Human_osteoblast_sample_#531rep3_DEX_treated_24h


title: Human_osteoblast_sample_#528rep1_DEX_treated_24h


title: Human_osteoblast_sample_#528rep3_DEX_treated_24h


title: Human_osteoblast_sample_#546rep1_DEX_treated_24h


title: Human_osteoblast_sample_#526rep1_DEX_treated_24h


title: Human_osteoblast_sample_#536rep1_DEX_treated_24h


title: Human_osteoblast_sample_#528rep2_DEX_treated_24h


title: Human_osteoblast_sample_#525rep3_DEX_treated_24h


title: Human_osteoblast_sample_#526rep2_DEX_treated_24h


title: Human_osteoblast_sample_#525rep2_DEX_treated_24h


title: Human_osteoblast_sample_#537rep2_DEX_treated_24h


title: Human_osteoblast_sample_#524rep3_DEX_treated_24h


title: 6hpi_G217B_(C6_220)

city: San Francisco

first: Sajeev

last: Batra

state: CA

country: USA

institute: UCSF

hyb_protocol: Cy5 labeled sample was hybridized to the MEEBO array in 3x SSC at 65C 36 hours.

scan_protocol: MEEBO arrays were scanned with an Axon 4000B scanner (Axon Instruments, Union City, CA, USA) and gridded using Spotreader (Niles Scientific) and GenePix 6.0 (Molecular Devices).

data_processing: Spot analysis was performed with GenePix v6.0 and normalization performed in Nomad 2.0. Data table contains log2 of the Nomad-normalized Ratio Of Medians (635/532) with flag values < 0 removed.

organism: Mus musculus

source_name: Amplified RNA from bone marrow-derived macrophages

label_protocol: RNA extracted from the samples was amplified using Amino Allyl MessageAmp II aRNA kit from Ambion. The amplified material was then coupled to Cy5.

extract_protocol: Qiagen RNeasy Mini kit

tag: treatment

value: test sample 6hpi_G217B_(C6_220)

tag: strain

tag: age

value: 8 w

value: bone marrow derived macrophages

source_name: pooled amplified sample RNA

label_protocol: RNA extracted from the pooled RNA reference sample was coupled to Cy3.

extract_protocol: Qiagen RNeasy RNA Isolation kit

value: reference sample


title: 24hpi_G217B_(C6_223)

value: test sample 24hpi_G217B_(C6_223)


title: Human_osteoblast_sample_#523rep2_DEX_treated_24h


title: 4hpi_G217B_(C6_217)

value: test sample 4hpi_G217B_(C6_217)


title: Human_osteoblast_sample_#525rep1_DEX_treated_24h


title: Human_osteoblast_sample_#529rep2_DEX_treated_24h


title: 2hpi_G217B_(C6_211)

value: test sample 2hpi_G217B_(C6_211)


title: 24hpi_UV-G217B_(C4_146)

value: test sample 24hpi_UV-G217B_(C4_146)


title: 2hpi_mock_(C6_210)

value: test sample 2hpi_mock_(C6_210)


title: 8hpi_UV-G217B_(C4_144)

value: test sample 8hpi_UV-G217B_(C4_144)


title: 6hpi_UV-G217B_(C4_143)

value: test sample 6hpi_UV-G217B_(C4_143)


title: 20hpi_UV-G217B_(P8_040)

value: test sample 20hpi_UV-G217B_(P8_040)


title: Human_osteoblast_sample_#522rep3_DEX_treated_24h

value: trabecular bone

value: osteoblasts


title: Human_osteoblast_sample_#523rep3_DEX_treated_24h


title: Human_osteoblast_sample_#524rep1_DEX_treated_24h

value: female


title: 3hpi_G217B_(C6_213)

value: test sample 3hpi_G217B_(C6_213)


title: Human_osteoblast_sample_#523rep1_DEX_treated_24h

value: dexamethasone

value: male


title: 2hpi_UV-G217B_(P8_039)

value: test sample 2hpi_UV-G217B_(P8_039)

value: 8 w


title: Human_osteoblast_sample_#521rep3_DEX_treated_24h


title: 20hpi_G217B_(C4_134)

value: test sample 20hpi_G217B_(C4_134)

value: bone marrow derived macrophages

value: reference sample


title: 12hpi_UV-G217B_(C4_145)

value: test sample 12hpi_UV-G217B_(C4_145)


title: Human_osteoblast_sample_#521rep2_DEX_treated_24h


title: Human_osteoblast_sample_#522rep2_DEX_treated_24h


title: Human_osteoblast_sample_#524rep2_DEX_treated_24h


title: Human_osteoblast_sample_#521rep1_DEX_treated_24h


title: 12hpi_G217B_(C4_133)

value: test sample 12hpi_G217B_(C4_133)


title: 24hpi_G217B_(C4_140)

value: test sample 24hpi_G217B_(C4_140)


title: Human_osteoblast_sample_#518rep3_DEX_treated_24h


title: Human_osteoblast_sample_#519rep3_DEX_treated_24h


title: Human_osteoblast_sample_#518rep2_DEX_treated_24h


title: 2hpi_G217B_(C4_129)

value: test sample 2hpi_G217B_(C4_129)


title: 8hpi_G217B_(C4_132)

value: test sample 8hpi_G217B_(C4_132)


title: 3hpi_G217B_(C4_138)

value: test sample 3hpi_G217B_(C4_138)


title: 6hpi_G217B_(C4_139)

value: test sample 6hpi_G217B_(C4_139)


title: Human_osteoblast_sample_#519rep2_DEX_treated_24h

value: trabecular bone

value: osteoblasts


title: Human_osteoblast_sample_#517rep1_DEX_treated_24h

value: female


title: 12hpi_mock_(P8_052)

value: test sample 12hpi_mock_(P8_052)


title: Human_osteoblast_sample_#519rep1_DEX_treated_24h

value: dexamethasone

value: male


title: Human_osteoblast_sample_#517rep3_DEX_treated_24h


title: 8hpi_mock_(P8_051)

value: test sample 8hpi_mock_(P8_051)

value: 8 w


title: Human_osteoblast_sample_#517rep2_DEX_treated_24h


title: Human_osteoblast_sample_#516rep2_DEX_treated_24h


title: Human_osteoblast_sample_#518rep1_DEX_treated_24h


title: 20hpi_mock_(P8_053)

value: test sample 20hpi_mock_(P8_053)

value: bone marrow derived macrophages


title: 24hpi_mock_(P8_054)

value: test sample 24hpi_mock_(P8_054)

value: reference sample


title: Human_osteoblast_sample_#515rep2_DEX_treated_24h


title: 6hpi_mock_(P8_049)

value: test sample 6hpi_mock_(P8_049)


title: Human_osteoblast_sample_#516rep3_DEX_treated_24h


title: Human_osteoblast_sample_#514rep3_DEX_treated_24h


title: 3hpi_mock_(P8_048)

value: test sample 3hpi_mock_(P8_048)


title: 2hpi_mock_(P8_047)

value: test sample 2hpi_mock_(P8_047)


title: Human_osteoblast_sample_#514rep1_DEX_treated_24h


title: Human_osteoblast_sample_#513rep3_DEX_treated_24h


title: Human_osteoblast_sample_#515rep1_DEX_treated_24h


title: 3hpi_UV-G217B_(C4_142)

value: test sample 3hpi_UV-G217B_(C4_142)


title: Human_osteoblast_sample_#575rep3_DEX_treated_24h


title: Strain QX189 (Cy3) vs Common Reference (Cy5)

city: New York

first: Matthew

last: Rockman

state: NY

address: 100 Washington Sq. E.

institute: New York University

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-10 Scan Time: 11:01:40 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

data_processing:
Extraction Software: Agilent Feature Extractor
Extraction Software Version: 9.1.3.1
Datafile type: Agilent result file
Agilent feature extraction software was used to perform dye bias correction and linear normalization.

organism: Caenorhabditis elegans

label_protocol:
Type of label: Cy5
reference URL: http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636

extract_protocol: Extraction method: Trizol followed by Qiagen Rneasy Kit

tag: strain name

value: Strain QX189

label_protocol:
Type of label: Cy3
reference URL: http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636

tag: strain source

value: Mixed strain, mixed stage, N2 and CB4856


title: Strain QX185 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-10 Scan Time: 11:27:58 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX185


title: Strain QX193 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-03 Scan Time: 12:02:58 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX193


title: Human_osteoblast_sample_#511rep2_DEX_treated_24h

value: trabecular bone

value: osteoblasts


title: Human_osteoblast_sample_#513rep1_DEX_treated_24h

value: dexamethasone

value: male


title: Strain QX187 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 10:50:31 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX187


title: Human_osteoblast_sample_#508rep1_DEX_treated_24h


title: Strain QX182 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-09 Scan Time: 12:21:44 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX182


title: Human_osteoblast_sample_#508rep2_DEX_treated_24h


title: Human_osteoblast_sample_#508rep3_DEX_treated_24h


title: Human_osteoblast_sample_#509rep3_DEX_treated_24h

value: female


title: Human_osteoblast_sample_#509rep2_DEX_treated_24h


title: Human_osteoblast_sample_#507rep2_DEX_treated_24h


title: Strain QX173 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-09 Scan Time: 12:12:57 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX173


title: Strain QX180 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-02 Scan Time: 10:45:00 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX180


title: Human_osteoblast_sample_#506rep2_DEX_treated_24h


title: Human_osteoblast_sample_#507rep1_DEX_treated_24h


title: Human_osteoblast_sample_#506rep3_DEX_treated_24h


title: Strain QX171 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-10 Scan Time: 10:53:28 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX171


title: Human_osteoblast_sample_#509rep1_DEX_treated_24h


title: Strain QX181 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-02 Scan Time: 10:27:42 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX181


title: Human_osteoblast_sample_#511rep1_DEX_treated_24h


title: Strain QX178 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-09 Scan Time: 12:30:54 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX178


title: Strain QX177 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-28 Scan Time: 11:47:09 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX177


title: Strain QX184 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 11:07:52 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX184


title: Strain QX192 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 10:42:09 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX192

value: Mixed strain, mixed stage, N2 and CB4856


title: Strain QX183 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-03 Scan Time: 11:46:46 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX183


title: Strain QX179 (Cy3) vs Common Reference (Cy5)

value: Strain QX179


title: Strain QX163 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-09 Scan Time: 12:39:05 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX163


title: Human_osteoblast_sample_#643rep3_BMP2_treated_2h

scan_protocol: The BeadArrays were scanned according to the standard Illumina scanning protocol using the Illumina®BeadArray Reader (version 1.7.0.44) and the BeadScan software (version 3.5.31.17122).

source_name: Primary human osteoblasts, BMP2, 2h

value: trabecular bone

value: osteoblasts

value: bone morphogenetic protein 2 (BMP2)


title: Strain QX157 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-04-27 Scan Time: 12:13:05 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX157


title: Human_osteoblast_sample_#634rep2_BMP2_treated_2h

value: female


title: Human_osteoblast_sample_#643rep2_BMP2_treated_2h

value: male


title: Human_osteoblast_sample_#642rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#644rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#634rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#642rep1_BMP2_treated_2h


title: Strain QX160 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-02 Scan Time: 11:03:24 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX160


title: Human_osteoblast_sample_#631rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#632rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#632rep3_BMP2_treated_2h


title: Strain QX139 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 10:59:40 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX139


title: Human_osteoblast_sample_#644rep1_BMP2_treated_2h


title: Strain QX149 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-06 Scan Time: 14:50:34 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

data_processing:
Extraction Software: Agilent Feature Extractor
Extraction Software Version: 9.5.3.1
Datafile type: Agilent result file
Agilent feature extraction software was used to perform dye bias correction and linear normalization.

value: Strain QX149


title: Human_osteoblast_sample_#631rep3_BMP2_treated_2h


title: Strain QX138 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-09 Scan Time: 12:48:40 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX138


title: Strain QX137 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-10 Scan Time: 11:09:51 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX137


title: Strain QX143 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 10:25:45 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX143


title: Strain QX14 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-03 Scan Time: 11:38:29 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX14


title: Human_osteoblast_sample_#630rep3_BMP2_treated_2h


title: Strain QX12 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-04-27 Scan Time: 12:05:02 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX12

value: Mixed strain, mixed stage, N2 and CB4856


title: Strain QX133 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-05 Scan Time: 10:32:46 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX133


title: Strain QX153 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-28 Scan Time: 11:39:06 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX153


title: Strain QX131 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-28 Scan Time: 11:47:09 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX131


title: Strain QX156 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-10 Scan Time: 11:18:31 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX156


title: Human_osteoblast_sample_#630rep2_BMP2_treated_2h

value: trabecular bone

value: osteoblasts

value: bone morphogenetic protein 2 (BMP2)


title: Strain QX129 (Cy3) vs Common Reference (Cy5)

value: Strain QX129


title: Human_osteoblast_sample_#628rep3_BMP2_treated_2h

value: male


title: Strain QX127 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-04-27 Scan Time: 11:56:55 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX127


title: Human_osteoblast_sample_#628rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#625rep3_BMP2_treated_2h


title: Strain QX124 (Cy3) vs Common Reference (Cy5)

value: Strain QX124


title: Strain QX125 (Cy3) vs Common Reference (Cy5)

value: Strain QX125


title: Human_osteoblast_sample_#627rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#626rep2_BMP2_treated_2h

value: female


title: Human_osteoblast_sample_#624rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#627rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#624rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#626rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#623rep3_BMP2_treated_2h


title: Strain QX101 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-06 Scan Time: 14:42:37 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX101


title: Human_osteoblast_sample_#625rep2_BMP2_treated_2h


title: Strain QX104 (Cy3) vs Common Reference (Cy5)

value: Strain QX104


title: Human_osteoblast_sample_#622rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#623rep2_BMP2_treated_2h


title: Strain QX100 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-06 Scan Time: 14:58:32 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX100


title: Strain QX117 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-05 Scan Time: 10:23:33 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX117

value: Mixed strain, mixed stage, N2 and CB4856


title: Strain QX114 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-02 Scan Time: 10:27:42 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX114


title: Strain QX10 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-03 Scan Time: 12:11:58 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX10


title: Strain QX112 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-02 Scan Time: 10:19:29 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX112


title: Strain QX106 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-07 Scan Time: 11:07:59 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX106


title: Strain QX102 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-09 Scan Time: 12:48:40 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX102


title: Human_osteoblast_sample_#622rep2_BMP2_treated_2h

scan_protocol: The BeadArrays were scanned according to the standard Illumina scanning protocol using the Illumina®BeadArray Reader (version 1.7.0.44) and the BeadScan software (version 3.5.31.17122).

value: trabecular bone

value: osteoblasts

value: bone morphogenetic protein 2 (BMP2)


title: Strain QX109 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-05 Scan Time: 10:15:37 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX109


title: Strain QX99 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-02 Scan Time: 10:36:57 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX99


title: Human_osteoblast_sample_#621rep3_BMP2_treated_2h


title: Strain QX97 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-02 Scan Time: 10:45:00 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX97


title: Human_osteoblast_sample_#620rep1_BMP2_treated_2h

value: male


title: Strain QX96 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 10:33:57 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX96


title: Strain QX9 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-10 Scan Time: 11:27:58 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX9


title: Strain QX8 (Cy3) vs Common Reference (Cy5)

value: Strain QX8


title: Human_osteoblast_sample_#619rep3_BMP2_treated_2h

value: female


title: Strain QX84 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-07 Scan Time: 11:16:15 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX84

value: Mixed strain, mixed stage, N2 and CB4856


title: Strain QX95 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-04-27 Scan Time: 12:21:12 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX95


title: Strain QX147 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 10:25:45 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX147


title: Human_osteoblast_sample_#619rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#621rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#617rep3_BMP2_treated_2h


title: Strain QX80 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-09 Scan Time: 12:39:05 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX80


title: Strain QX77 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-06 Scan Time: 15:23:09 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX77


title: Human_osteoblast_sample_#616rep2_BMP2_treated_2h

value: trabecular bone


title: Strain QX79 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-05 Scan Time: 10:06:53 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX79


title: Human_osteoblast_sample_#617rep2_BMP2_treated_2h

value: osteoblasts

value: bone morphogenetic protein 2 (BMP2)


title: Human_osteoblast_sample_#618rep2_BMP2_treated_2h


title: Strain QX78 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 10:59:40 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX78


title: Strain QX92 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-29 Scan Time: 11:02:34 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX92


title: Strain QX76 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-30 Scan Time: 09:58:56 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX76


title: Human_osteoblast_sample_#618rep3_BMP2_treated_2h

value: male


title: Human_osteoblast_sample_#615rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#614rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#616rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#615rep2_BMP2_treated_2h


title: Strain QX7 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-03 Scan Time: 12:02:58 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX7


title: Strain QX73 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-06 Scan Time: 15:15:12 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX73


title: Human_osteoblast_sample_#620rep3_BMP2_treated_2h

scan_protocol: The BeadArrays were scanned according to the standard Illumina scanning protocol using the Illumina®BeadArray Reader (version 1.7.0.44) and the BeadScan software (version 3.5.31.17122).


title: Strain QX71 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-28 Scan Time: 11:31:02 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX71


title: Human_osteoblast_sample_#614rep1_BMP2_treated_2h


title: Strain QX63 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-10 Scan Time: 10:43:46 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX63


title: Human_osteoblast_sample_#612rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#612rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#613rep3_BMP2_treated_2h

value: female


title: Strain QX62 (Cy3) vs Common Reference (Cy5)

value: Strain QX62

value: Mixed strain, mixed stage, N2 and CB4856


title: Human_osteoblast_sample_#611rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#609rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#613rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#611rep2_BMP2_treated_2h


title: Strain QX5 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-07 Scan Time: 10:51:09 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX5


title: Strain QX49 (Cy3) vs Common Reference (Cy5)

value: Strain QX49


title: Human_osteoblast_sample_#609rep2_BMP2_treated_2h

value: trabecular bone


title: Human_osteoblast_sample_#610rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#608rep3_BMP2_treated_2h


title: Strain QX59 (Cy3) vs Common Reference (Cy5)

value: Strain QX59


title: Strain QX55 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-10 Scan Time: 11:01:40 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX55


title: Human_osteoblast_sample_#607rep2_BMP2_treated_2h

value: osteoblasts

value: bone morphogenetic protein 2 (BMP2)


title: Human_osteoblast_sample_#610rep1_BMP2_treated_2h


title: Strain QX39 (Cy3) vs Common Reference (Cy5)

value: Strain QX39


title: Strain QX43 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-10 Scan Time: 10:53:28 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX43


title: Strain QX61 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-07 Scan Time: 10:59:38 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX61


title: Strain QX42 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-28 Scan Time: 11:22:59 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX42


title: Strain QX38 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 10:33:57 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX38


title: Strain QX40 (Cy3) vs Common Reference (Cy5)

value: Strain QX40


title: Strain QX2 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-03 Scan Time: 11:46:46 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX2


title: Human_osteoblast_sample_#607rep1_BMP2_treated_2h

value: male


title: Human_osteoblast_sample_#608rep1_BMP2_treated_2h

value: female


title: Strain QX34 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-30 Scan Time: 10:08:21 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX34

value: Mixed strain, mixed stage, N2 and CB4856


title: Human_osteoblast_sample_#606rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#606rep1_BMP2_treated_2h


title: Strain QX54 (Cy3) vs Common Reference (Cy5)

value: Strain QX54


title: Strain QX237 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-04-27 Scan Time: 11:56:55 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX237


title: Human_osteoblast_sample_#605rep3_BMP2_treated_2h

value: trabecular bone


title: Strain QX27 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-03 Scan Time: 12:11:58 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX27


title: Strain QX236 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-05 Scan Time: 10:15:37 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX236


title: Human_osteoblast_sample_#604rep1_BMP2_treated_2h

value: osteoblasts

value: bone morphogenetic protein 2 (BMP2)


title: Strain QX225 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-05 Scan Time: 10:23:33 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX225


title: Human_osteoblast_sample_#605rep2_BMP2_treated_2h


title: Strain QX231 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-09 Scan Time: 12:48:40 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX231


title: Strain QX232 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-03 Scan Time: 12:20:19 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX232


title: Human_osteoblast_sample_#604rep3_BMP2_treated_2h

scan_protocol: The BeadArrays were scanned according to the standard Illumina scanning protocol using the Illumina®BeadArray Reader (version 1.7.0.44) and the BeadScan software (version 3.5.31.17122).


title: Strain QX234 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-06 Scan Time: 15:06:28 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX234


title: Strain QX229 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-02 Scan Time: 10:27:42 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX229


title: Human_osteoblast_sample_#603rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#602rep2_BMP2_treated_2h


title: Strain QX24 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-05 Scan Time: 10:32:46 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX24


title: Human_osteoblast_sample_#601rep2_BMP2_treated_2h

value: male


title: Strain QX230 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-06 Scan Time: 15:15:12 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX230


title: Strain QX22 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-07 Scan Time: 10:43:03 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX22


title: Strain QX208 (Cy3) vs Common Reference (Cy5)

value: Strain QX208

value: Mixed strain, mixed stage, N2 and CB4856


title: Strain QX207 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-07 Scan Time: 11:24:19 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX207


title: Strain QX211 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-05 Scan Time: 10:06:53 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX211


title: Strain QX221 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-02 Scan Time: 10:36:57 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX221


title: Strain QX215 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-09 Scan Time: 12:30:54 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX215


title: Strain QX214 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-02 Scan Time: 10:19:29 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX214


title: Strain QX210 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-04-27 Scan Time: 12:05:02 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX210


title: Human_osteoblast_sample_#601rep1_BMP2_treated_2h

value: trabecular bone

value: osteoblasts

value: bone morphogenetic protein 2 (BMP2)


title: Strain QX206 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-30 Scan Time: 09:50:43 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX206


title: Human_osteoblast_sample_#603rep3_BMP2_treated_2h

value: female


title: Human_osteoblast_sample_#598rep2_BMP2_treated_2h


title: Strain QX16 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-07 Scan Time: 10:59:38 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX16


title: Strain QX198 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-09 Scan Time: 12:39:05 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX198


title: Strain QX19 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-10 Scan Time: 11:27:58 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX19


title: Human_osteoblast_sample_#599rep2_BMP2_treated_2h


title: Strain QX196 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-10 Scan Time: 11:01:40 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX196


title: Human_osteoblast_sample_#596rep3_BMP2_treated_2h

scan_protocol: The BeadArrays were scanned according to the standard Illumina scanning protocol using the Illumina®BeadArray Reader (version 1.7.0.44) and the BeadScan software (version 3.5.31.17122).

value: male


title: Strain QX218 (Cy3) vs Common Reference (Cy5)

value: Strain QX218

value: Mixed strain, mixed stage, N2 and CB4856


title: Strain QX172 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-03 Scan Time: 12:11:58 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX172


title: Human_osteoblast_sample_#595rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#594rep2_BMP2_treated_2h


title: Strain QX205 (Cy3) vs Common Reference (Cy5)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-06 Scan Time: 14:58:32 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX205


title: Human_osteoblast_sample_#600rep1_BMP2_treated_2h


title: Strain QX174 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-03 Scan Time: 11:54:53 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX174


title: Human_osteoblast_sample_#597rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#599rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#595rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#598rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#600rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#596rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#602rep3_BMP2_treated_2h


title: Strain QX169 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 10:25:45 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX169


title: Human_osteoblast_sample_#597rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#591rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#593rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#592rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#594rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#592rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#591rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#590rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#590rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#589rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#592rep2_BMP2_treated_2h


title: Strain QX15 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-03 Scan Time: 11:38:29 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX15


title: Human_osteoblast_sample_#588rep2_BMP2_treated_2h

value: trabecular bone


title: Strain QX161 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-03 Scan Time: 11:46:46 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX161


title: Strain QX165 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 11:07:52 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX165


title: Strain QX154 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-05 Scan Time: 10:32:46 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX154


title: Strain QX168 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-28 Scan Time: 11:22:59 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX168


title: Strain QX166 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-02-23 Scan Time: 10:05:48 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX166


title: Human_osteoblast_sample_#588rep3_BMP2_treated_2h

value: osteoblasts

value: bone morphogenetic protein 2 (BMP2)


title: Human_osteoblast_sample_#597rep2_BMP2_treated_2h

value: female


title: Human_osteoblast_sample_#593rep1_BMP2_treated_2h

value: male


title: Strain QX162 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-28 Scan Time: 11:31:02 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX162


title: Strain QX148 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-28 Scan Time: 11:47:09 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX148

value: Mixed strain, mixed stage, N2 and CB4856


title: Strain QX170 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-09 Scan Time: 12:30:54 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX170


title: Human_osteoblast_sample_#587rep2_BMP2_treated_2h


title: Strain QX151 (Cy5) vs Common Reference (Cy3)

value: Strain QX151


title: Human_osteoblast_sample_#586rep2_BMP2_treated_2h


title: Strain QX145 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-06 Scan Time: 14:50:34 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX145


title: Strain QX150 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-04-27 Scan Time: 12:21:12 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX150


title: Human_osteoblast_sample_#587rep3_BMP2_treated_2h

value: trabecular bone


title: Strain QX142 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-06 Scan Time: 15:06:28 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX142


title: Strain QX164 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-04-27 Scan Time: 12:29:20 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX164


title: Strain QX167 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 10:42:09 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX167


title: Strain QX158 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-06 Scan Time: 14:42:37 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX158


title: Human_osteoblast_sample_#595rep2_BMP2_treated_2h

scan_protocol: The BeadArrays were scanned according to the standard Illumina scanning protocol using the Illumina®BeadArray Reader (version 1.7.0.44) and the BeadScan software (version 3.5.31.17122).


title: Human_osteoblast_sample_#589rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#586rep3_BMP2_treated_2h


title: Strain QX144 (Cy5) vs Common Reference (Cy3)

value: Strain QX144


title: Strain QX159 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-28 Scan Time: 11:39:06 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX159


title: Human_osteoblast_sample_#586rep1_BMP2_treated_2h

value: osteoblasts

value: bone morphogenetic protein 2 (BMP2)


title: Human_osteoblast_sample_#585rep3_BMP2_treated_2h

value: female


title: Human_osteoblast_sample_#585rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#585rep1_BMP2_treated_2h


title: Strain QX13 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-30 Scan Time: 10:08:21 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX13


title: Human_osteoblast_sample_#583rep2_BMP2_treated_2h


title: Strain QX141 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-06 Scan Time: 15:31:07 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX141


title: Human_osteoblast_sample_#581rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#581rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#582rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#582rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#583rep3_BMP2_treated_2h


title: Strain QX136 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-09 Scan Time: 12:21:44 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX136

value: Mixed strain, mixed stage, N2 and CB4856


title: Strain QX134 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-04-27 Scan Time: 12:05:02 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX134


title: Strain QX132 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-04-27 Scan Time: 12:13:05 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX132


title: Human_osteoblast_sample_#580rep2_BMP2_treated_2h


title: Strain QX135 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-09 Scan Time: 12:12:57 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX135


title: Strain QX140 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-07 Scan Time: 10:51:09 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX140


title: Strain QX11 (Cy5) vs Common Reference (Cy3)

value: Strain QX11


title: Human_osteoblast_sample_#581rep1_BMP2_treated_2h

value: trabecular bone


title: Strain QX119 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-05 Scan Time: 10:32:46 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX119


title: Strain QX120 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-05 Scan Time: 10:06:53 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX120


title: Strain QX115 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-06 Scan Time: 14:50:34 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX115


title: Strain QX128 (Cy5) vs Common Reference (Cy3)

value: Strain QX128


title: Strain QX113 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-05 Scan Time: 10:23:33 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX113


title: Strain QX121 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-02 Scan Time: 10:27:42 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX121


title: Human_osteoblast_sample_#580rep1_BMP2_treated_2h

value: osteoblasts

value: bone morphogenetic protein 2 (BMP2)

value: female


title: Human_osteoblast_sample_#579rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#579rep1_BMP2_treated_2h


title: Strain QX108 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-05 Scan Time: 09:57:41 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX108


title: Strain QX111 (Cy5) vs Common Reference (Cy3)

value: Strain QX111

value: Mixed strain, mixed stage, N2 and CB4856


title: Human_osteoblast_sample_#578rep3_BMP2_treated_2h

value: male


title: Human_osteoblast_sample_#577rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#576rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#578rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#578rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#577rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#576rep1_BMP2_treated_2h


title: Strain QX94 (Cy5) vs Common Reference (Cy3)

value: Strain QX94


title: Strain QX90 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-10 Scan Time: 11:18:31 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX90


title: Strain QX98 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-02 Scan Time: 10:45:00 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX98


title: Human_osteoblast_sample_#575rep3_BMP2_treated_2h

scan_protocol: The BeadArrays were scanned according to the standard Illumina scanning protocol using the Illumina®BeadArray Reader (version 1.7.0.44) and the BeadScan software (version 3.5.31.17122).

value: trabecular bone


title: Strain QX107 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-28 Scan Time: 11:39:06 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX107


title: Strain QX93 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-02 Scan Time: 11:03:24 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX93


title: Strain QX87 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-05 Scan Time: 10:15:37 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX87


title: Human_osteoblast_sample_#575rep2_BMP2_treated_2h


title: Strain QX88 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-06 Scan Time: 15:31:07 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX88


title: Strain QX91 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-30 Scan Time: 09:58:56 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX91


title: Strain QX86 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 10:42:09 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX86


title: Human_osteoblast_sample_#576rep3_BMP2_treated_2h

value: osteoblasts


title: Human_osteoblast_sample_#573rep3_BMP2_treated_2h

value: bone morphogenetic protein 2 (BMP2)


title: Human_osteoblast_sample_#575rep1_BMP2_treated_2h

value: female


title: Strain QX103 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-07 Scan Time: 11:24:19 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX103


title: Human_osteoblast_sample_#570rep2_BMP2_treated_2h


title: Strain QX83 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-07 Scan Time: 11:07:59 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX83


title: Strain QX85 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 11:07:52 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX85

value: Mixed strain, mixed stage, N2 and CB4856


title: Human_osteoblast_sample_#573rep1_BMP2_treated_2h


title: Strain QX82 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-10 Scan Time: 11:09:51 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX82


title: Strain QX6 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-04-27 Scan Time: 12:29:20 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX6


title: Strain QX81 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-02-23 Scan Time: 10:05:48 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX81


title: Human_osteoblast_sample_#573rep2_BMP2_treated_2h

value: trabecular bone


title: Human_osteoblast_sample_#572rep1_BMP2_treated_2h

value: male


title: Human_osteoblast_sample_#572rep3_BMP2_treated_2h


title: Strain QX74 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-07 Scan Time: 10:59:38 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX74


title: Human_osteoblast_sample_#570rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#566rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#567rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#570rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#572rep2_BMP2_treated_2h


title: Strain QX70 (Cy5) vs Common Reference (Cy3)

value: Strain QX70


title: Strain QX69 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-03 Scan Time: 11:54:53 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX69


title: Human_osteoblast_sample_#566rep2_BMP2_treated_2h


title: Strain QX66 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-09 Scan Time: 12:12:57 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX66


title: Strain QX67 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-03 Scan Time: 11:46:46 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX67


title: Human_osteoblast_sample_#567rep2_BMP2_treated_2h

scan_protocol: The BeadArrays were scanned according to the standard Illumina scanning protocol using the Illumina®BeadArray Reader (version 1.7.0.44) and the BeadScan software (version 3.5.31.17122).

value: osteoblasts


title: Strain QX68 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-03 Scan Time: 12:20:19 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX68


title: Strain QX65 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-02 Scan Time: 10:45:00 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX65


title: Human_osteoblast_sample_#591rep2_BMP2_treated_2h

value: bone morphogenetic protein 2 (BMP2)

value: female


title: Human_osteoblast_sample_#553rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#580rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#565rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#565rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#555rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#553rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#551rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#566rep1_BMP2_treated_2h


title: Strain QX64 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-02-23 Scan Time: 10:15:03 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX64


title: Human_osteoblast_sample_#565rep1_BMP2_treated_2h


title: Strain QX4 (Cy5) vs Common Reference (Cy3)

value: Strain QX4

value: Mixed strain, mixed stage, N2 and CB4856


title: Human_osteoblast_sample_#555rep2_BMP2_treated_2h


title: Strain QX51 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-07 Scan Time: 11:16:15 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX51


title: Human_osteoblast_sample_#551rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#550rep3_BMP2_treated_2h


title: Strain QX52 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-06 Scan Time: 15:31:07 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX52


title: Strain QX45 (Cy5) vs Common Reference (Cy3)

value: Strain QX45


title: Strain QX56 (Cy5) vs Common Reference (Cy3)

value: Strain QX56


title: Human_osteoblast_sample_#551rep1_BMP2_treated_2h

value: trabecular bone


title: Strain QX58 (Cy5) vs Common Reference (Cy3)

value: Strain QX58


title: Strain QX47 (Cy5) vs Common Reference (Cy3)

value: Strain QX47


title: Strain QX48 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 10:50:31 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX48


title: Strain QX44 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-30 Scan Time: 09:50:43 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX44


title: Strain QX53 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-07 Scan Time: 10:43:03 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX53


title: Strain QX41 (Cy5) vs Common Reference (Cy3)

value: Strain QX41


title: Human_osteoblast_sample_#557rep2_BMP2_treated_2h

value: osteoblasts


title: Strain QX72 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-04-27 Scan Time: 12:05:02 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX72


title: Strain QX60 (Cy5) vs Common Reference (Cy3)

value: Strain QX60


title: Human_osteoblast_sample_#550rep2_BMP2_treated_2h

value: bone morphogenetic protein 2 (BMP2)

value: male


title: Human_osteoblast_sample_#550rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#546rep3_BMP2_treated_2h


title: Strain QX37 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-09 Scan Time: 12:39:05 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX37

value: Mixed strain, mixed stage, N2 and CB4856


title: Human_osteoblast_sample_#546rep2_BMP2_treated_2h


title: Strain QX33 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-10 Scan Time: 11:09:51 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX33


title: Human_osteoblast_sample_#548rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#548rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#546rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#543rep2_BMP2_treated_2h

value: female


title: Human_osteoblast_sample_#544rep1_BMP2_treated_2h


title: Strain QX29 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 10:59:40 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX29


title: Strain QX25 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-02-23 Scan Time: 10:24:30 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX25


title: Human_osteoblast_sample_#543rep3_BMP2_treated_2h

value: trabecular bone


title: Strain QX235 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-05 Scan Time: 10:15:37 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX235


title: Human_osteoblast_sample_#543rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#548rep1_BMP2_treated_2h


title: Strain QX30 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-29 Scan Time: 11:02:34 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX30


title: Strain QX233 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-06 Scan Time: 15:15:12 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX233


title: Strain QX31 (Cy5) vs Common Reference (Cy3)

value: Strain QX31


title: Strain QX32 (Cy5) vs Common Reference (Cy3)

value: Strain QX32


title: Human_osteoblast_sample_#541rep3_BMP2_treated_2h

scan_protocol: The BeadArrays were scanned according to the standard Illumina scanning protocol using the Illumina®BeadArray Reader (version 1.7.0.44) and the BeadScan software (version 3.5.31.17122).

value: osteoblasts


title: Strain QX228 (Cy5) vs Common Reference (Cy3)

value: Strain QX228


title: Human_osteoblast_sample_#541rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#540rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#541rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#540rep3_BMP2_treated_2h


title: Strain QX224 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-02 Scan Time: 10:36:57 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX224


title: Strain QX226 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-30 Scan Time: 10:08:21 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX226


title: Human_osteoblast_sample_#540rep2_BMP2_treated_2h

value: bone morphogenetic protein 2 (BMP2)

value: male


title: Strain QX222 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-06 Scan Time: 14:42:37 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX222

value: Mixed strain, mixed stage, N2 and CB4856


title: Human_osteoblast_sample_#536rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#537rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#537rep2_BMP2_treated_2h


title: Strain QX216 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-07 Scan Time: 11:24:19 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX216


title: Strain QX217 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-10 Scan Time: 11:18:31 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX217


title: Strain QX223 (Cy5) vs Common Reference (Cy3)

value: Strain QX223


title: Strain QX21 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-10 Scan Time: 10:53:28 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX21


title: Human_osteoblast_sample_#535rep1_BMP2_treated_2h

value: trabecular bone

value: female


title: Human_osteoblast_sample_#535rep2_BMP2_treated_2h


title: Strain QX20 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-02-23 Scan Time: 10:15:03 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX20


title: Strain QX220 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-05 Scan Time: 09:57:41 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX220


title: Strain QX212 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-12-05 Scan Time: 10:23:33 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX212


title: Strain QX213 (Cy5) vs Common Reference (Cy3)

value: Strain QX213


title: Strain QX209 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 10:50:31 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX209


title: Strain QX227 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 10:33:57 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX227


title: Strain QX3 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-03-09 Scan Time: 12:21:44 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX3


title: Human_osteoblast_sample_#534rep2_BMP2_treated_2h

value: osteoblasts

value: bone morphogenetic protein 2 (BMP2)


title: Human_osteoblast_sample_#536rep3_BMP2_treated_2h

value: male


title: Human_osteoblast_sample_#534rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#531rep1_BMP2_treated_2h


title: Strain QX204 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-07 Scan Time: 10:43:03 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX204

value: Mixed strain, mixed stage, N2 and CB4856


title: Human_osteoblast_sample_#528rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#525rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#525rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#531rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#529rep1_BMP2_treated_2h


title: Strain QX203 (Cy5) vs Common Reference (Cy3)

value: Strain QX203


title: Human_osteoblast_sample_#525rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#524rep1_BMP2_treated_2h


title: Strain QX202 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-07 Scan Time: 11:07:59 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX202


title: Strain QX199 (Cy5) vs Common Reference (Cy3)

value: Strain QX199


title: Human_osteoblast_sample_#524rep3_BMP2_treated_2h

value: trabecular bone


title: Human_osteoblast_sample_#528rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#529rep2_BMP2_treated_2h

value: female


title: Human_osteoblast_sample_#523rep3_BMP2_treated_2h


title: Strain QX1 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-10 Scan Time: 11:01:40 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX1


title: Human_osteoblast_sample_#523rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#523rep2_BMP2_treated_2h


title: Strain QX195 (Cy5) vs Common Reference (Cy3)

value: Strain QX195


title: Strain QX197 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-08-08 Scan Time: 10:25:45 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX197


title: Strain QX194 (Cy5) vs Common Reference (Cy3)

value: Strain QX194


title: Strain QX200 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-11-02 Scan Time: 10:19:29 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX200


title: Human_osteoblast_sample_#522rep1_BMP2_treated_2h

scan_protocol: The BeadArrays were scanned according to the standard Illumina scanning protocol using the Illumina®BeadArray Reader (version 1.7.0.44) and the BeadScan software (version 3.5.31.17122).


title: Human_osteoblast_sample_#521rep2_BMP2_treated_2h


title: Strain QX26 (Cy5) vs Common Reference (Cy3)

scan_protocol: Pixel Size: 5 Scan Date: 2007-02-23 Scan Time: 10:24:30 Scanner Make: Agilent Technologies Scanner Scanner Model: G2505B Scanning software: ChipScan Scanning software version: A.7.0.1

value: Strain QX26


title: Human_osteoblast_sample_#544rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#519rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#519rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#517rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#516rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#518rep1_BMP2_treated_2h


title: Strain QX28 (Cy5) vs Common Reference (Cy3)

value: Strain QX28


title: Human_osteoblast_sample_#518rep3_BMP2_treated_2h

value: osteoblasts


title: Human_osteoblast_sample_#517rep1_BMP2_treated_2h

value: bone morphogenetic protein 2 (BMP2)


title: Human_osteoblast_sample_#517rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#515rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#515rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#513rep1_BMP2_treated_2h

value: male


title: Human_osteoblast_sample_#514rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#511rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#518rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#514rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#513rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#511rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#509rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#508rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#509rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#516rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#521rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#509rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#511rep3_BMP2_treated_2h


title: Human_osteoblast_sample_#508rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#508rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#506rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#507rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#507rep2_BMP2_treated_2h


title: Human_osteoblast_sample_#506rep1_BMP2_treated_2h


title: Human_osteoblast_sample_#519rep3_BMP2_treated_2h


title: Patient # 20

city: Rochester

first: Alexey

middle: Aleksandrovich

last: Leontovich

state: MN

address: 200 First street

department: Health Science Research

institute: Mayo Clinic

description: Gene expression data from tissue samples of frozen melanoma tumor biopsies

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the GeneChip® Scanner 3000 7G

data_processing: The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm

label: biotin

source_name: Frozen melanoma tumor biopsy

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

extract_protocol: Qiagen RNA extraction kit used according to the manufacturer's protocol

treatment_protocol: frozen tissue sections of melanoma biopsies from stage IV melanoma patients

value: M


title: Patient # 8


title: Patient # 22


title: Patient # 14


title: Patient # 13


title: Patient # 19

value: F


title: Patient # 17


title: Patient # 2


title: Patient # 16


title: Patient # 5


title: KMD 3

city: Boston

first: Douglas

middle: M

last: Warner

state: MA

address: 136 Harrison

department: Molecular Biology & Microbiology

institute: Tufts University

hyb_protocol: Following fragmentation, 10 ug of cDNA were hybridized for 16 hr at 45C on E.coli 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station .

scan_protocol: GeneChips were scanned using the GeneChip Scanner 3000

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.

organism: Escherichia coli

source_name: cDNA made from strain KMD extracted from mouse kidney on day 2 post infection

label_protocol: Biotinylated cDNA were prepared according to the standard Affymetrix protocol from 1 ug total cDNA (Expression Analysis Technical Manual, 2001, Affymetrix).

growth_protocol: Bacteria were inoculated by direct injection of the mouse bladder, and kidney samples were taken at day 2 post-infection

extract_protocol: Infected kidney solutions were centrifuged at 5000xg for 10 min to separate bacteria (pellet) from kidney (surface of RNA-later solution) cells.  The kidney cells were evacuated from the top of the solution, and the remaining solution was spun once more at 12000xg for 10 min, followed by disposal of the supernatant.  Pelleted cells were resuspended in TE buffer and treated with lysozyme (Sigma) at 1mg/ml final concentration for 5 min, and samples of 3-5 infected mice were pooled together for each infection group.  Nucleic acids were extracted via the RNA extraction protocol and products of the RNAeasy kit (Qiagen).  Following column purification, RNA samples were treated with DNAse Turbo (Ambion) for 30 min at 37C, followed by quantification of RNA using a spectrophotometer.  Remaining polyadenylated eukaryotic RNA was depleted from the samples following the MicroEnrich (Ambion) protocol and resuspended in 20l of TE buffer.  RNA was quantified spectrophotometrically and equal amounts (~300-500ng) of KMD and PC1012 RNA samples were subjected to the MessageAmp (Ambion) RNA amplification protocol.  Resultant amplified RNA was quantified and equal amounts were used in the Affymetrix protocol for prokaryotic cDNA synthesis and biotin labeling.

treatment_protocol: Mouse kidneys were homogonized in RNALater solution (Ambion) and bacterial titers were taken.  Samples were pooled, and centrifuged as described below

value: KMD

tag: tissue source

value: kidney from CD-1 mice


title: KMD 1


title: Patient # 11


title: Patient # 7

value: Unknown


title: Patient # 4


title: Patient # 1


title: Patient # 15


title: Patient # 21


title: Patient # 18


title: PC 1

source_name: cDNA made from strain PC1012(marArobsoxS) extracted from mouse kidney on day 2 post infection


title: Patient # 10


title: Patient # 12


title: 12hpi_cbp1_(D3_083)

scan_protocol: MEEBO arrays were scanned with an Axon 4000B scanner (Axon Instruments, Union City, CA, USA) and gridded using Spotreader (Niles Scientific) and GenePix 6.0 (Molecular Devices).

value: test sample 12hpi_cbp1_(D3_083)

value: 8 w

value: bone marrow derived macrophages

value: reference sample


title: PC 3


title: 3hpi_cbp1_(D3_081)

value: test sample 3hpi_cbp1_(D3_081)


title: 6hpi_cbp1_(D3_082)

value: test sample 6hpi_cbp1_(D3_082)


title: 3hpi_G217B_(D3_085)

value: test sample 3hpi_G217B_(D3_085)


title: 12hpi_mock_(D3_079)

value: test sample 12hpi_mock_(D3_079)


title: KMD 2


title: 6hpi_G217B_(D3_086)

value: test sample 6hpi_G217B_(D3_086)


title: 12hpi_G217B_(D1_184)

value: test sample 12hpi_G217B_(D1_184)


title: 12hpi_ura+ura_(D3_090)

value: test sample 12hpi_ura+ura_(D3_090)


title: Patient # 6


title: Patient # 9


title: 6hpi_mock_(D3_078)

value: test sample 6hpi_mock_(D3_078)


title: Patient # 3

value: M


title: 2hpi_G217B_(D1_174)

value: test sample 2hpi_G217B_(D1_174)


title: 3hpi_mock_(D3_077)

value: test sample 3hpi_mock_(D3_077)


title: 2hpi_mock_(D1_171)

value: test sample 2hpi_mock_(D1_171)


title: 6hpi_ura+ura_(D3_089)

value: test sample 6hpi_ura+ura_(D3_089)


title: 3hpi_ura+ura_(D3_088)

value: test sample 3hpi_ura+ura_(D3_088)


title: 6hpi_cbp1+CBP1_(D3_092)

value: test sample 6hpi_cbp1+CBP1_(D3_092)

value: 8 w


title: 3hpi_cbp1+CBP1_(D3_091)

value: test sample 3hpi_cbp1+CBP1_(D3_091)

value: bone marrow derived macrophages

value: reference sample


title: 12hpi_G217B_(D3_087)

value: test sample 12hpi_G217B_(D3_087)


title: 3hpi_mock_(D3_076)

value: test sample 3hpi_mock_(D3_076)


title: 24hpi_G217B_(D1_170)

value: test sample 24hpi_G217B_(D1_170)


title: cell line SW620, 10 cells, replicate B

city: Barcelona

first: Victoria

last: Core

address: Baldiri Reixac, 10

department: Functional Genomics Core

country: Spain

institute: Institute for Research in Biomedicine

description: Gene expression data from 100 pg total RNA

hyb_protocol: Affymetrix GeneChip Human Gene 1.0ST arrays were hybridized with 10 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol  described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics  protocol FS450_007)

scan_protocol: Scanning was done on an Affymetrix GeneChip Scanner 7G

data_processing: Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003)

source_name: ATCC: CCL-227

label_protocol: The indicated starting amount of total RNA was amplified using the TransPlex® Complete Whole Transcriptome Amplification Kit (Sigma; reference WTA2) and subsequently labeled using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.

extract_protocol: ATCC protocol

tag: protocol

value: Pico profiling

tag: cell line


title: cell line SW480, 2000 cells, replicate D

description: Gene expression data from 10 ng total RNA

source_name: ATCC: CCL-228

value: WTA expression profiling


title: cell line SW620, 10 cells, replicate A


title: cell line SW480, 10 cells, replicate B


title: Human Universal Reference RNA, 100 pg, replicate 3

source_name: Stratagene Universal Human Reference RNA (Catalog #740000), MAQC sample A

extract_protocol: Stratagene protocol


title: Brain RNA, 100 pg, replicate 2

source_name: Ambion Human Brain Reference RNA (Catalog #6050), MAQC sample B

extract_protocol: Ambion protocol


title: cell line SW480, 2000 cells, replicate A


title: Brain RNA, 100 pg, replicate 3


title: Brain RNA, 25 ng, replicate 1

description: Gene expression data from 25 ng total RNA


title: cell line SW480, 2000 cells, replicate C


title: Brain RNA, 100 pg, replicate 1


title: Human Universal Reference RNA, 25 ng, replicate 1


title: cell line SW620, 2000 cells, replicate A


title: cell line SW620, 2000 cells, replicate C


title: Human Universal Reference RNA, 25 ng, replicate 3


title: Human Universal Reference RNA, 100 pg, replicate 2


title: Human Universal Reference RNA, 100 pg, replicate 1


title: cell line SW480, 10 cells, replicate A


title: Human Universal Reference RNA, 25 ng, replicate 2


title: cell line SW620, 10 cells, replicate C


title: left ventricle, sham, wildtype, rep1

city: Oslo

first: Ståle

last: Nygård

address: Institute for Experimental Medical Research, Oslo University Hospital - Ulleval

country: Norway

institute: University of Oslo

hyb_protocol: Following fragmentation, cRNA were hybridized for 16 h at 450C in the hybridization oven at 60 rpm, as described by manufacturer (Affymetrix).

scan_protocol: Gene Chips were scanned using the Hewlett Packard GeneArray Scanner 3000 7G.

data_processing: The data were preprocessed using the robust multi-array average (RMA) package in R with default settings, i.e. quantile normalization and RMA background correction

label: phycoerythrin

source_name: left ventricle, sham, wildtype

label_protocol: According to standard Affymetrix protocol (FS450_00007).

extract_protocol: Total RNA was isolated with an RNeasy mini kit according to the manufacturer's instructions.

treatment_protocol: Mice were anesthetized with isoflurane and sacrificed by cervical dislocation. Left ventricle was quickly excised and immediately frozen in liquid nitrogen.

value: male

tag: genotype

value: Wildtype C57BL/6

value: left ventricle myocardium


title: cell line SW620, 2000 cells, replicate D


title: Brain RNA, 25 ng, replicate 3


title: Brain RNA, 25 ng, replicate 2


title: left ventricle, sham, cxcr5 knockout, rep2

source_name: left ventricle, sham, cxcr5 knockout

value: CXCR5 -/-, C57BL/6 background


title: left ventricle, sham, wildtype, rep3


title: left ventricle, sham, wildtype, rep2


title: left ventricle, sham, cxcr5 knockout, rep1


title: left ventricle, sham, cxcr5 knockout, rep3