title: Chimp 1618 - HEV infection SAR55 - week 3 - mAdbID:109726

description: mAdb experiment ID: :109726

source_name: HEV-infection with SAR55 - week 3

treatment_protocol:
Treatment time: week 3 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis E virus: 0.5 ml of the HEV SAR55 strain (genotype 1) at approximately 10^6 ID.

value: week 3


title: Chimp 1618 - HEV infection SAR55 - week 1 - mAdbID:109725

status: Public on Sep 22 2010

type: RNA

city: Bethesda

first: Claro

last: Yu

email: clyu@niaid.nih.gov, boond@mail.nih.gov

state: MD

address: 50 South Drive

department: Hepatitis Viruses Section

country: USA

institute: NIAID

description: mAdb experiment ID: :109725

hyb_protocol: Affymetrix Hybridization Protocol Other: Following fragmentation, 15 micrograms of cRNA was hybridized for 16 hours at 45C on arrays from Affymetrix. Arrays were washed and stained in an Affymetrix Fluidics Station.

scan_protocol: Affy Scanning Protocol Other: Scanning was performed by the Affymetrix 3000 Scanner with a 7G upgrade.

data_processing:
Calculation Method: The Genomatix ChipInspector software, which uses CEL files as input, was used to map probes to transcripts in the human (version 37) and chimpanzee (version 2) genome sequences in ElDorado (Genomatix proprietary genome annotation database), in order to remove probes without 100 % sequence identity, to perform a linear total intensity normalization of probes of each chip (.cel file).

Normalized probe set level data points not available from the Genomatix software.
Processed data files that are available, as listed in Description field, are linked as supplementary files on Series GSE22160 record.

label: biotin

molecule: total RNA

organism: Pan troglodytes

source_name: HEV-infection with SAR55 - week 1

label_protocol:
Affymetrix Labeling Protocol
Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from mRNA.

extract_protocol:
Trizol Extraction
Other: Frozen liver needle biopsies embedded in OCT were homogenized with a PRO 200 Homogenizer with Multi-Gen 7mm 316 Stainless Generators (Pro Scientific, Oxford, CT). Total RNA was isolated with TRIZOL Reagent (Invitrogen, Carlsbad, CA) and purified with an RNEasy Mini Kit (Qiagen, Valencia, CA).

treatment_protocol:
Treatment time: week 1 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis E virus: 0.5 ml of the HEV SAR55 strain (genotype 1) at approximately 10^6 ID.

tag: chimp

tag: infection

value: HEV

tag: strain

tag: time

value: week 1

tag: madbid

tag: tissue

value: liver

tag: disease state

value: Hepatitis E


title: Chimp 1618 - HEV infection SAR55 - baseline - mAdbID:109724

description: mAdb experiment ID: :109724

source_name: HEV-infection with SAR55 - baseline

treatment_protocol:
Treatment time: baseline (pre-inoculation)
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis E virus: 0.5 ml of the HEV SAR55 strain (genotype 1) at approximately 10^6 ID.

value: baseline

value: Normal


title: Chimp 1618 - HEV infection SAR55 - week 5 - mAdbID:109728

description: mAdb experiment ID: :109728

source_name: HEV-infection with SAR55 - week 5

treatment_protocol:
Treatment time: week 5 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis E virus: 0.5 ml of the HEV SAR55 strain (genotype 1) at approximately 10^6 ID.

value: week 5


title: Chimp 1616 - HEV infection SAR55 - week 7 - mAdbID:109723

description: mAdb experiment ID: :109723

source_name: HEV-infection with SAR55 - week 7

treatment_protocol:
Treatment time: week 7 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis E virus: 0.5 ml of the HEV SAR55 strain (genotype 1) at approximately 10^6 ID.

value: week 7


title: Chimp 1616 - HEV infection SAR55 - week 3 - mAdbID:109721

description: mAdb experiment ID: :109721


title: Chimp 1616 - HEV infection SAR55 - week 1 - mAdbID:109720

description: mAdb experiment ID: :109720


title: Chimp 1375 - HEV infection SAR55 - week 5 - mAdbID:109717

description: mAdb experiment ID: :109717


title: Chimp 1616 - HEV infection SAR55 - baseline - mAdbID:109719

description: mAdb experiment ID: :109719


title: Chimp 1375 - HEV infection SAR55 - week 2 - mAdbID:109716

description: mAdb experiment ID: :109716

source_name: HEV-infection with SAR55 - week 2

treatment_protocol:
Treatment time: week 2 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis E virus: 0.5 ml of the HEV SAR55 strain (genotype 1) at approximately 10^6 ID.

value: week 2


title: Chimp 1374 - HEV infection SAR55 - week 8 - mAdbID:109714

description: mAdb experiment ID: :109714

source_name: HEV-infection with SAR55 - week 8

treatment_protocol:
Treatment time: week 8 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis E virus: 0.5 ml of the HEV SAR55 strain (genotype 1) at approximately 10^6 ID.

value: week 8


title: Chimp 1375 - HEV infection SAR55 - baseline - mAdbID:109715

description: mAdb experiment ID: :109715


title: Chimp 1374 - HEV infection SAR55 - week 4 - mAdbID:109712

description: mAdb experiment ID: :109712

source_name: HEV-infection with SAR55 - week 4

treatment_protocol:
Treatment time: week 4 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis E virus: 0.5 ml of the HEV SAR55 strain (genotype 1) at approximately 10^6 ID.

value: week 4


title: A375SM NT shRNA

city: Houston

first: Gabriel

middle: J

last: Villares

state: TX

address: 1515 Holcombe Blvd

institute: University of Texas, MD Anderson Cancer Center

description: Gene expression data from NT shRNA-transduced metastatic melanoma A375SM cell line.

hyb_protocol: Fragmented cRNAs were hybridized to Affymetrix Human Genome Array U133 Plus 2.0 array chips for 16 hours at 45C. The chips were washed and stained using an Affymetrix microfluidic station  by Codon Biosciences.

scan_protocol: Chips were scanned with an Affymetrix GeneChip Scanner 3000 by Codon Biosciences.

data_processing: Data were analyzed by Codon Biosciences (now SeqWright) using GeneSpring software version 7.3.

organism: Homo sapiens

source_name: A375SM metastatic melanoma cell transduced with NT shRNA

label_protocol: Biotinylation of cRNAs were performed by Codon Biosciences (now SeqWright) using 10ug of total RNA according to the standard Affymetrix protocol.

extract_protocol: Total RNA was extracted from cells using the RNAqueous kit from Ambion following the manufacturer's protocol.

tag: cell line

tag: cell type

value: metastatic melanoma cells

tag: shRNA

value: non-targeting control


title: Chimp 1374 - HEV infection SAR55 - week 3 - mAdbID:109711

description: mAdb experiment ID: :109711


title: Chimp 1374 - HEV infection SAR55 - baseline - mAdbID:109709

description: mAdb experiment ID: :109709


title: Chimp 1374 - HEV infection SAR55 - week 1 - mAdbID:109710

description: mAdb experiment ID: :109710


title: Chimp 1628 - HCV infection H77 - week 15 - mAdbID:109703

description: mAdb experiment ID: :109703

source_name: HCV infection with H77 - week 15

treatment_protocol:
Treatment time: week 15 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: < 100 infectious doses (ID) of the H77 strain (genotype 1a).

value: HCV

value: week 15

value: Hepatitis C


title: Chimp 1628 - HCV infection H77 - week 9 - mAdbID:109702

description: mAdb experiment ID: :109702

source_name: HCV infection with H77 - week 9

treatment_protocol:
Treatment time: week 9 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: < 100 infectious doses (ID) of the H77 strain (genotype 1a).

value: week 9


title: Chimp 1628 - HCV infection H77 - week 19 - mAdbID:109704

description: mAdb experiment ID: :109704

source_name: HCV infection with H77 - week 19

treatment_protocol:
Treatment time: week 19 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: < 100 infectious doses (ID) of the H77 strain (genotype 1a).

value: week 19


title: Chimp 1628 - HCV infection H77 - week 8 - mAdbID:109701

description: mAdb experiment ID: :109701

source_name: HCV infection with H77 - week 8

treatment_protocol:
Treatment time: week 8 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: < 100 infectious doses (ID) of the H77 strain (genotype 1a).


title: Chimp 1628 - HCV infection H77 - week 2 - mAdbID:109700

description: mAdb experiment ID: :109700

source_name: HCV infection with H77 - week 2

treatment_protocol:
Treatment time: week 2 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: < 100 infectious doses (ID) of the H77 strain (genotype 1a).


title: Chimp 1628 - HCV infection H77 - week 1 - mAdbID:109699

description: mAdb experiment ID: :109699

source_name: HCV infection with H77 - week 1

treatment_protocol:
Treatment time: week 1 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: < 100 infectious doses (ID) of the H77 strain (genotype 1a).

value: week 1


title: Chimp 1616 - HEV infection SAR55 - week 4 - mAdbID:109722

description: mAdb experiment ID: :109722

value: HEV

value: liver


title: Chimp 1618 - HEV infection SAR55 - week 4 - mAdbID:109727

description: mAdb experiment ID: :109727

value: Hepatitis E


title: Chimp 1628 - HCV infection H77 - week 16 - mAdbID:109697

description: mAdb experiment ID: :109697

source_name: HCV infection with H77 - week 16

treatment_protocol:
Treatment time: week 16 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: < 100 infectious doses (ID) of the H77 strain (genotype 1a).

value: week 16


title: Chimp 1422 - HCV infection T.N. - week 3 - mAdbID:109691

description: mAdb experiment ID: :109691

source_name: HCV infection with T.N. - week 3

treatment_protocol:
Treatment time: week 3 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: an unknown titer, in serum, of the T.N. strain (genotype 1a).

value: week 3


title: Chimp 1422 - HCV infection T.N. - week 9 - mAdbID:109693

description: mAdb experiment ID: :109693

source_name: HCV infection with T.N. - week 9

treatment_protocol:
Treatment time: week 9 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: an unknown titer, in serum, of the T.N. strain (genotype 1a).


title: Chimp 1422 - HCV infection T.N. - week 10 - mAdbID:109695

description: mAdb experiment ID: :109695

source_name: HCV infection with T.N. - week 10

treatment_protocol:
Treatment time: week 10 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: an unknown titer, in serum, of the T.N. strain (genotype 1a).

value: week 10


title: Chimp 1375 - HEV infection SAR55 - week 8 - mAdbID:109718

description: mAdb experiment ID: :109718


title: A375SM PAR-1 shRNA

description: Gene expression data from PAR-1 shRNA-transduced metastatic melanoma A375SM cell line.

source_name: A375SM metastatic melanoma cell transduced with PAR-1 shRNA


title: Chimp 1374 - HEV infection SAR55 - week 5 - mAdbID:109713

description: mAdb experiment ID: :109713

source_name: HEV-infection with SAR55 - week 5

value: week 5


title: Chimp 1422 - HCV infection T.N. - week 2 - mAdbID:109690

description: mAdb experiment ID: :109690

source_name: HCV infection with T.N. - week 2

treatment_protocol:
Treatment time: week 2 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: an unknown titer, in serum, of the T.N. strain (genotype 1a).

value: week 2


title: Chimp 1422 - HCV infection T.N. - week 1 - mAdbID:109689

description: mAdb experiment ID: :109689

source_name: HCV infection with T.N. - week 1

treatment_protocol:
Treatment time: week 1 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: an unknown titer, in serum, of the T.N. strain (genotype 1a).


title: Chimp 1422 - HCV infection T.N. - baseline - mAdbID:109688

description: mAdb experiment ID: :109688

source_name: HCV infection with T.N. - baseline

treatment_protocol:
Treatment time: baseline (pre-inoculation)
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: an unknown titer, in serum, of the T.N. strain (genotype 1a).

value: baseline

value: Normal


title: Chimp 1417 - HCV infection HC-J6 - week 3 - mAdbID:109684

description: mAdb experiment ID: :109684

source_name: HCV infection with HC-J6 - week 3

treatment_protocol:
Treatment time: week 3 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: an unknown titer, in serum, of the HC-J6 strain (genotype 2a).


title: Chimp 1417 - HCV infection HC-J6 - week 2 - mAdbID:109683

description: mAdb experiment ID: :109683

source_name: HCV infection with HC-J6 - week 2

treatment_protocol:
Treatment time: week 2 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: an unknown titer, in serum, of the HC-J6 strain (genotype 2a).


title: Chimp 1417 - HCV infection HC-J6 - week 13 - mAdbID:109685

description: mAdb experiment ID: :109685

source_name: HCV infection with HC-J6 - week 13

treatment_protocol:
Treatment time: week 13 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: an unknown titer, in serum, of the HC-J6 strain (genotype 2a).

value: week 13


title: Chimp 1417 - HCV infection HC-J6 - week 14 - mAdbID:109686

description: mAdb experiment ID: :109686

source_name: HCV infection with HC-J6 - week 14

treatment_protocol:
Treatment time: week 14 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: an unknown titer, in serum, of the HC-J6 strain (genotype 2a).

value: HCV

value: week 14


title: Chimp 1422 - HCV infection T.N. - week 13 - mAdbID:109696

description: mAdb experiment ID: :109696

source_name: HCV infection with T.N. - week 13

treatment_protocol:
Treatment time: week 13 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: an unknown titer, in serum, of the T.N. strain (genotype 1a).

value: Hepatitis C


title: Chimp 1417 - HCV infection HC-J6 - week 11 - mAdbID:109681

description: mAdb experiment ID: :109681

source_name: HCV infection with HC-J6 - week 11

treatment_protocol:
Treatment time: week 11 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: an unknown titer, in serum, of the HC-J6 strain (genotype 2a).

value: week 11


title: Chimp 1417 - HCV infection HC-J6 - baseline - mAdbID:109682

description: mAdb experiment ID: :109682

source_name: HCV infection with HC-J6 - baseline

treatment_protocol:
Treatment time: baseline (pre-inoculation)
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: an unknown titer, in serum, of the HC-J6 strain (genotype 2a).


title: Kupffer CRIgko F4/80high Cd11blow replicate 2

city: South San Francisco

first: Yan

last: Ma

state: CA

address: 1 DNA Way

department: Bioinformatics

institute: Gentech Inc

hyb_protocol: Overnight hybridization was performed at 60 °C. Slides were then washed in 6 × SSC and 0.1 × SSC, followed by acetyl nitrile drying step.

scan_protocol: Agilent scanner, manufacturer's protocol

data_processing: Agilent Feature Extraction software Version A.7.5.1

organism: Mus musculus

source_name: Kupffer CRIgko F4/80high Cd11blow

label_protocol: Each sample was labeled with Cy5, and Universal Mouse Reference (Stratagene, La Jolla, CA, USA) was labeled with Cy3. Labeled Cy5 and Cy3 probes (750 ng) were fragmented for 30 min and both probes were loaded on each chip.

growth_protocol: Cells were pooled into three replicates of 20 mice each for each of the cell types and genotype, resulting in 18 samples.

extract_protocol: For preparation of total RNA, cells were sorted directly into Guanidine Isothiocyanate (RLT) lysis buffer and frozen in aliquots at −20 °C until use (Qiagen RNeasy mini kit, Valencia, CA, USA).

treatment_protocol: Cells were sorted at 20000 cells/s on a Cytomation MoFlo flow cytometer (Ft Collins, CO, USA) based on expression of well-known macrophage markers Emr1 (F4/80 antibody) and Cd11b, as well as the newly reported macrophage marker CRIg, to ensure macrophage identity to the extent possible.

source_name: Stratagene Universal Mouse Reference

extract_protocol: commercial

tag: sample type

value: reference


title: Kupffer CRIgko F4/80high Cd11blow replicate 1


title: Kupffer CRIgwt F4/80high Cd11blow replicate 3

source_name: Kupffer CRIgwt F4/80high Cd11blow


title: Kupffer CRIgko F4/80high Cd11blow replicate 3


title: splenic CRIgnegative F4/80low Cd11blow replicate ST_T

source_name: splenic CRIgnegative F4/80low Cd11blow

value: spleen


title: splenic CRIgnegative F4/80intermediate Cd11bnegative replicate WX_W


title: Chimp 1628 - HCV infection H77 - baseline - mAdbID:109698

description: mAdb experiment ID: :109698

source_name: HCV infection with H77 - baseline

treatment_protocol:
Treatment time: baseline (pre-inoculation)
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: < 100 infectious doses (ID) of the H77 strain (genotype 1a).


title: splenic CRIgnegative F4/80low Cd11blow replicate WX_X


title: peritoneal CRIgnegative F4/80high Cd11bhigh replicate UV_V

value: peritoneum


title: Kupffer CRIgwt F4/80high Cd11blow replicate 1

value: liver


title: splenic CRIgnegative F4/80low Cd11blow replicate OP_P


title: peritoneal CRIgnegative F4/80high Cd11bhigh replicate QR_R


title: splenic CRIgnegative F4/80intermediate Cd11bnegative replicate ST_S


title: HeLa

city: Ube

first: Akira

last: Nakai

state: Yamaguchi Prefecture

address: Minami-Kogushi 1-1-1

department: Graduate School of Medicine

country: Japan

institute: Yamaguchi University

description:
Cells cultured under normal growth conditions.
HeLa

hyb_protocol: Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix). Arrays were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: Arrays were scanned using the Affymetrix GeneChip Scanner 3000.

data_processing: The data were analyzed with GeneChip Operating Softwere (GCOS, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.

source_name: Wild-type HeLa cells

label_protocol: Biotinylated cRNA were prepared from 2 μg total RNA with a One-Cycle cDNA Synthesis Kit and 3'-Amplification Reagents for IVT Labeling (Affymetrix).

growth_protocol: DMEM containing 10% fetal bovine serum at 37˚C.

extract_protocol: Total RNA was isolated from cells using TRIzol (Invitrogen).

treatment_protocol: No treatment.

value: HeLa

value: wild-type


title: Kupffer CRIgwt F4/80high Cd11blow replicate 2


title: HeLa+hHSF1ΔRDT-16

description:
hHSF1ΔRDT lacks the regulatory domain that masks its activation domain and possesses a glutamic acid at amino acid 395 instead of a leucine in the suppression domain of the trimerization domain.

Cells cultured under normal growth conditions.
RDT1

source_name: HeLa clone expressing an actively mutated hHSF1 (hHSF1ΔRDT)

value: mutated human HSF1


title: HeLa+hHSF1ΔRDT-17

description:
hHSF1ΔRDT lacks the regulatory domain that masks its activation domain and possesses a glutamic acid at amino acid 395 instead of a leucine in the suppression domain of the trimerization domain.

Cells cultured under normal growth conditions.
RDT2


title: splenic CRIgnegative F4/80intermediate Cd11bnegative replicate OP_O


title: peritoneal CRIgnegative F4/80high Cd11bhigh replicate MN_N


title: peritoneal CRIghigh F4/80high Cd11bhigh replicate QR_Q

source_name: peritoneal CRIghigh F4/80high Cd11bhigh


title: peritoneal CRIghigh F4/80high Cd11bhigh replicate MN_M


title: peritoneal CRIghigh F4/80high Cd11bhigh replicate UV_U


title: HeLa+cHSF1-C5

description:
Cells cultured under normal growth conditions.
HeLa/cHSF1

source_name: HeLa clone expressing chicken HSF1

value: chicken HSF1


title: Fz1-/-; Fz2-/- E13.5 palate replicate 1

city: Baltimore

first: Huimin

address: 725 N Wolfe Street, PCTB 805

department: Molecular Biology and Genetics

institute: Johns Hopkins School of Medicine

description:
Supplementary files:
HYu-Fz1KOFz2KO-1-MOE430_2.CEL
HYu-Fz1KOFz2KO-1-MOE430_2.CHP

Contact Huimin Yu(hyu20@jhmi.edu) for more details.

hyb_protocol: Johns Hopkins Microarray Core Facility, http://www.microarray.jhmi.edu/

data_processing:
RMA (Bioconductor) pre-processed signal intensity, as shown in Data table below.
CHP file (Algorithm: ExpressionStat 5.0) linked as supplementary file.

extract_protocol: Trizol and RNeasy according to the manufacturer's instructions

tag: genotype/variation

tag: replicate

tag: developmental stage

value: embryo

tag: age

value: palate

tag: gender

value: mixed gender

value: C57BL6/129 mixed background


title: Fz1-/-; Fz2+/+  E13.5 palate replicate 2

description:
Supplementary files:
HYu-Fz1KOFz2WT-2-MOE430_2.CEL
HYu-Fz1KOFz2WT-2-MOE430_2.CHP

Contact Huimin Yu(hyu20@jhmi.edu) for more details.

scan_protocol: Johns Hopkins Microarray Core Facility, http://www.microarray.jhmi.edu/


title: Fz1-/-; Fz2+/+ E13.5 palate replicate 1

description:
Supplementary files:
HYu-Fz1KOFz2WT-1-MOE430_2.CEL
HYu-Fz1KOFz2WT-1-MOE430_2.CHP

Contact Huimin Yu(hyu20@jhmi.edu) for more details.

label_protocol: Johns Hopkins Microarray Core Facility, http://www.microarray.jhmi.edu/


title: Fz1-/-; Fz2-/- E13.5 palate replicate 2

description:
Supplementary files:
HYu-Fz1KOFz2KO-2-MOE430_2.CEL
HYu-Fz1KOFz2KO-2-MOE430_2.CHP

Contact Huimin Yu(hyu20@jhmi.edu) for more details.


title: Fz1-/-; Fz2+/+ E13.5 palate replicate 3

description:
Supplementary files:
HYu-Fz1KOFz2WT-3-MOE430_2.CEL
HYu-Fz1KOFz2WT-3-MOE430_2.CHP

Contact Huimin Yu(hyu20@jhmi.edu) for more details.


title: HNL1

city: Tsukuba

first: Noemi

last: Fusaki

state: Ibaraki

address: 6 Ohkubo

department: Cell Therapy & Regenerative Medicine

institute: DNAVEC Corporation

description: Gene expression of HNL1 iPS clone at passage 21

hyb_protocol: 1.5 ug of Cy3-labelled cRNA (specific activity >10.0 pmol Cy3/ug cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 50ul containing 1x Agilent fragmentation buffer and 2x Agilent blocking agent following the manufacturers instructions. On completion of the fragmentation reaction, 50ul of  Agilent 2x HI-RPM Hybridization Buffer was added to the fragmentation mixture and hybridized to Agilent Whole Human Genome Oligo Microarrays (G4112F) for 17 hours at 65°C in a rotating Agilent hybridization oven.  After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute with 37°C GE Wash buffer 2 (Agilent), then dried immediately by brief centrifugation.

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2565B) using one color scan setting for 4x44k array slides (Scan Area 75x25 mm, Scan resolution 5um, Dye channel is set to Green and Green PMT is set to 10-100% (XDR) ).

data_processing: The scanned images were analyzed with Feature Extraction Software v 9.5.3.1 (Agilent) using default parameters (protocol GE1-v5_95 and Grid: 014850_D_F_20100115) to obtain background subtracted and spatially detrended Processed Signal intensities.

source_name: human iPS cells from neonatal fibroblast BJ using SeV/TS-MYC, -OCT4, SOX2 and KLF4.

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Quick Amp Labeling kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).  Dye incorporation and cRNA yield were checked with the NanoDrop ND-1000 Spectrophotometer.

extract_protocol: Total RNA was prepared using the RNeasy Mini Kit (Qiagen) following the manufacturer's recommendations. RNA was quantified using a NanoDrop-1000 spectrophotometer and quality was monitored with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA).

treatment_protocol: Human fibroblasts (BJ, HDF) were cultured  in DMEM supplemented with 10% heat-inactivated fetal bovine serum in a humidified incubator with 5% CO2. Human fibroblasts were then infected with SeV vectors carrying OCT4, SOX2, KLF4 and c-MYC at an MOI of 3 for overnight in DMEM supplemented with 10% heat-inactivated fetal bovine serum in a humidified incubator with 5% CO2. The medium was exchanged on the next day and cultured for 6 days in the same medium described above. Then the cells were collected by trypsin treatment, counted and then transfered at 1 x 10^5 cells per 10 cm dish onto MMC-treated MEF feeder cells. The next day, medium was exchanged to primate ES medium supplemented with 4 ng/ml bFGF.  Cells were cultured and when ES-like colonies were appered (iPS cells),  the colonies were picked up and cultured on MEF feeder cells. After more than 10 passages, the iPS cells were confirmed both that they expressed human ES marker genes by RT-PCR and SeV genome was not detected by quantitative RT-PCR.

value: iPS cells

value: male


title: retro-8

description: Gene expression of retro-8 iPS clone at passage 21

source_name: human iPS cells from neonatal fibroblast BJ using mCAT/SIV and retrovirus/MYC and TS-OCT4, SOX2 and KLF4.


title: Fz1-/-; Fz2-/- E13.5 palate  replicate 3

description:
Supplementary files:
HYu-Fz1KOFz2KO-3-MOE430_2.CEL
HYu-Fz1KOFz2KO-3-MOE430_2.CHP

Contact Huimin Yu(hyu20@jhmi.edu) for more details.


title: TS7/4F-H-39-7

description: Gene expression of TS7/4F-H-39-7 iPS clone at passage 18

source_name: human iPS cells from adult dermal fibroblast HDF using SeV/TS7-MYC, -OCT4, -SOX2 and KLF4 and treated at 39C for 5 days to remove SeV vectors.

value: female


title: BJ (2008)

description: Gene expression of parental fibroblast BJ

source_name: BJ fibroblast from human neonatal foreskin

value: fibroblast


title: Chimp 1417 - HCV infection HC-J6 - week 17 - mAdbID:109687

description: mAdb experiment ID: :109687

source_name: HCV infection with HC-J6 - week 17

treatment_protocol:
Treatment time: week 17 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: an unknown titer, in serum, of the HC-J6 strain (genotype 2a).

value: HCV

value: week 17

value: Hepatitis C


title: retro-6

description: Gene expression of retro-6 iPS clone at passage 13


title: Chimp 1422 - HCV infection T.N. - week 5 - mAdbID:109692

description: mAdb experiment ID: :109692

source_name: HCV infection with T.N. - week 5

treatment_protocol:
Treatment time: week 5 post-inoculation
In-vivo treatment: A chimpanzee was inoculated intravenously with the hepatitis C virus: an unknown titer, in serum, of the T.N. strain (genotype 1a).

value: week 5


title: retro-5

description: Gene expression of retro-5 iPS clone at passage 21


title: TS7/4F-H-39-4

description: Gene expression of TS7/4F-H-39-4 iPS clone at passage 18


title: TS7/4F-H-39-2

description: Gene expression of TS7/4F-H-39-2 iPS clone at passage 18


title: 193231 DFI>300

city: Fort Collins

first: Liza

middle: Emily

last: O'Donoghue

state: CO

address: 300 W. Drake Rd

department: Clinical Sciences

institute: Colorado State University

description: Gene expression data from primary tumor

hyb_protocol: cRNA was purified, quantified and fragmented before hybridization with the GeneChips.  Hybridized chips were washed, stained using streptavidin-conjugated phycoerythrin dye (Invitrogen, Carlsbad, CA, USA) and enhanced with biotinylated goat anti-streptavidin antibody (Vector Laboratories, Burlingame, CA, USA) using an Affymetrix GeneChip Fluidics Station 450.

scan_protocol: The Affymetrix GeneChip scanner 3000 was used to acquire images.

data_processing: The data were analyzed with Expression Console (PLIER).

organism: Canis lupus familiaris

source_name: Canine primary tumor from good responder cohort

label_protocol: One-Cycle Target Labeling and Control Reagents package (Affymetrix, Santa Clara, CA, USA) was used to synthesize cDNA from total RNA spiked with prokaryotic Poly-A RNA as a control. The Sample Cleanup Module (Affymetrix, Santa Clara, CA, USA) was used to purify the cDNA which was then used for synthesis of biotin-labeled cRNA.

growth_protocol: Primary tumor collected at time of limb amputation

extract_protocol: Trizol extraction of total RNA followed by Qiagen Rneasy cleanup was performed according to the manufacturer's instructions.

value: snap frozen primary tumor

tag: genotype(breed)

value: Mix

tag: age (years)


title: 190030 DFI>300

description: Gene expression data from primary tumor


title: 208513 DFI>300

description: Gene expression data from primary tumor

value: Greyhound


title: TS13/4F-35-2

description: Gene expression of TS13/4F-35-2 iPS clone at passage 10

source_name: human iPS cells from neonatal fibroblast BJ using SeV/TS13-MYC, -OCT4, -SOX2 and KLF4.


title: 188084 DFI>300

description: Gene expression data from primary tumor

value: Rottweiler


title: 180223 DFI>300

description: Gene expression data from primary tumor


title: 180119 DFI>300

description: Gene expression data from primary tumor


title: TS13/4F-32-6

description: Gene expression of TS13/4F-32-6 iPS clone at passage 10


title: TS7-5_5-5

description: Gene expression of TS7-5_5-5 iPS clone at passage 27

source_name: human iPS cells from neonatal fibroblast BJ using SeV/TS7-MYC and TS-OCT4, SOX2 and KLF4.


title: 168327 DFI>300

description: Gene expression data from primary tumor

value: Golden Ret.


title: 223986 DFI<100

description: Gene expression data from primary tumor

source_name: Canine primary tumor from poor responder cohort


title: TS7-5_5-3

description: Gene expression of TS7-5_5-3 iPS clone at passage 21


title: 212759 DFI<100

description: Gene expression data from primary tumor


title: 208756 DFI<100

description: Gene expression data from primary tumor

value: Labrador Ret.


title: 208911 DFI<100

description: Gene expression data from primary tumor

value: Doberman


title: TS15-4

description: Gene expression of TS15-4 iPS clone at passage 32

source_name: human iPS cells from neonatal fibroblast BJ using SeV/TS15-MYC and TS-OCT4, SOX2 and KLF4.


title: TS15-6

description: Gene expression of TS15-6 iPS clone at passage 32


title: 153599 DFI<100

description: Gene expression data from primary tumor


title: 184844 DFI<100

description: Gene expression data from primary tumor


title: Dif_0_1

city: Leiden

first: Peter

last: 't Hoen

address: PO Box 9600

department: Center for Human and Clinical Genetics

country: Netherlands

institute: Leiden University Medical Center

description: C2C12_differentiated; Time point: 0 min; replicate 1

hyb_protocol: Standard Affymetrix protocol for exon arrays

data_processing: Median polish summarization and VSN normalization

growth_protocol: C2C12 cells were grown in proliferation medium (DMEM with 10% fetal bovine serum (FBS), 2% Glutamax, 1% glucose and penicillin/streptomycin). Myogenic differentiation was induced by shifting to differentiation medium (DMEM with 2% FBS, 2% Glutamax, 1% glucose and penicillin/streptomycin). C2C12 cells were maintained in differentiation medium for 8 days, when long and multinucleated myotubes had formed.

extract_protocol: Cells were lysed and RNA was isolated with the Machery Nagel Nucleospin RNAII Kit.

treatment_protocol: Cultures of proliferating and differentiated C2C12 muscle cells in 6-well dishes containing 3 ml medium were treated with 5 µg/ml actinomycin D to arrest the transcription machinery.

tag: Time point

value: 0 min; replicate 1


title: 173175 DFI<100

description: Gene expression data from primary tumor


title: Dif_10_2

description: C2C12_differentiated; Time point: 10 min; replicate 2

scan_protocol: Standard Affymetrix protocol for exon arrays

value: 10 min; replicate 2


title: 204714 DFI<100

description: Gene expression data from primary tumor


title: Dif_20_1

description: C2C12_differentiated; Time point: 20 min; replicate 1

label_protocol: Standard Affymetrix protocol for exon arrays

value: 20 min; replicate 1


title: Dif_480_1

description: C2C12_differentiated; Time point: 480 min; replicate 1

value: 480 min; replicate 1


title: MDC 1

city: Honolulu

first: Yiqiang

last: Zhang

state: HI

address: 651 Ilalo St BSB-311D

department: Anatomy, Biochemistry and Physiology

institute: University of Hawaii Manoa

description: TaqMan low density array for rodent microRNA, detecting 381 genes.

data_processing: SDS software suites to obtain Ct value, and normalized to Mamm U6; comparative 2^-delta. Delta Ct method was used to evaluate the fold change of miRNA in MDCs vs Myo.

label: FAM

organism: Rattus norvegicus

source_name: myocyte (2 month old) -derived progenitor cells

growth_protocol: Young adult cardiomyocytes were isolated and purified from 2-month old Wistar-Kyoto rat hearts; purified cardiomyocytes were cultured in mitogen-riched medium for 2 weeks before harvested for total RNA extraction.

extract_protocol: mirVana Paris kit (Ambion)

tag: strain

value: Wistar-Kyoto

value: myocyte-derived (dedifferentiated) cardiac progenitor cells


title: MDC 2


title: Myocyte 3

source_name: 2 month rat heart

value: mature heart cells


title: TS13-6

description: Gene expression of TS13-6 iPS clone at passage 30

source_name: human iPS cells from neonatal fibroblast BJ using SeV/TS13-MYC and TS-OCT4, SOX2 and KLF4.

value: iPS cells

value: male


title: Dif_150_1

description: C2C12_differentiated; Time point: 150 min; replicate 1

value: 150 min; replicate 1


title: TS13-1

description: Gene expression of TS13-1 iPS clone at passage 28


title: Myocyte 2


title: TS15-H-2

description: Gene expression of TS15-H-2 iPS clone at passage 17

source_name: human iPS cells from adult dermal fibroblast HDF using SeV/TS15-MYC and TS-OCT4, SOX2 and KLF4.

value: female


title: MDC 3


title: Prol_60_2

description: C2C12_proliferating; Time point: 60 min; replicate 2

value: 60 min; replicate 2


title: Myocyte 1


title: Prol_0_2

description: C2C12_proliferating; Time point: 0 min; replicate 2

value: 0 min; replicate 2


title: Prol_150_1

description: C2C12_proliferating; Time point: 150 min; replicate 1


title: Prol_10_1

description: C2C12_proliferating; Time point: 10 min; replicate 1

value: 10 min; replicate 1


title: Prol_10_2

description: C2C12_proliferating; Time point: 10 min; replicate 2


title: BJ

description: Gene expression of parental fibroblast BJ

value: fibroblast


title: Dif_150_2

description: C2C12_differentiated; Time point: 150 min; replicate 2

value: 150 min; replicate 2


title: acid stress_rep 3

status: Public on Sep 21 2010

city: Braunschweig

first: Xiaoli

last: Xue

address: Inhoffenstr. 7

department: Cell Biology

country: Germany

institute: Helmholtz Center for Infection Research

description: biological replicate 2 of 2, acid treated mutant and wild type

hyb_protocol: 900 ng of each Cy3- and Cy5-labeled RNA was fragmented, and hybridized to the microarray at 65 °C for 17 hours using the Agilent Hybridization Chamber according to the manufacturer’s instructions.

scan_protocol: The arrays were scanned using the Agilent DNA Microarray Scanner,  and the raw data were extracted using Agilent Feature Extraction software (v9.5).

data_processing: The data were processed by Bioconductor packages written in R language (http://www.r-project.org/). The Linear Models for Microarray analysis (LIMMA) package was used for background correction, Loess-normalization of the two channels of one array, quantile-normalization between different arrays and identification of differentially expressed genes.

organism: Streptococcus mutans UA159

source_name: wild type under acid stress

label_protocol: RNA samples were labelled either with Cy3 or Cy5 using the ULS fluorescent labelling kit (Kreatech, Germany).

growth_protocol: S. mutans strains were grown in THBY medium at 37°C aerobically (5% CO2 enriched)

extract_protocol: RNA extraction was performed using the RNeasy mini kit (Qiagen).

treatment_protocol: at normal growth conditons or under different stresses

value: wildtype

source_name: rpoE knockout mutant under acid stress

value: rpoE knockout


title: log phase_rep 3

description: biological replicate 2 of 2, logarithmic phase of growth, mutant and wild type

source_name: wild type at logarithmic phase of growth

source_name: rpoE knockout mutant at logarithmic phase of growth


title: Dif_0_2

description: C2C12_differentiated; Time point: 0 min; replicate 2


title: acid + hydrogen peroxide stress_rep 3

description: biological replicate 2 of 2, acid + hydrogen peroxide treated mutant and wild type

source_name: wild type under acid + hydrogen peroxide stress

source_name: rpoE knockout mutant under acid + hydrogen peroxide stress


title: Dif_480_2

description: C2C12_differentiated; Time point: 480 min; replicate 2

value: 480 min; replicate 2


title: Prol_30_1

description: C2C12_proliferating; Time point: 30 min; replicate 1

value: 30 min; replicate 1


title: log phase_rep 2

description: biological replicate 1 of 2, technical replicate 2 of 2, logarithmic phase of growth, mutant and wild type


title: Dif_60_2

description: C2C12_differentiated; Time point: 60 min; replicate 2


title: hydrogen peroxide stress_rep 3

description: biological replicate 2 of 2, hydrogen peroxide treated mutant and wild type

source_name: wild type under hydrogen peroxide stress

source_name: rpoE knockout mutant under hydrogen peroxide stress


title: Prol_60_1

description: C2C12_proliferating; Time point: 60 min; replicate 1

value: 60 min; replicate 1


title: Prol_150_2

description: C2C12_proliferating; Time point: 150 min; replicate 2


title: acid stress_rep 2

description: biological replicate 1 of 2, technical replicate 2 of 2, acid treated mutant and wild type


title: hydrogen peroxide stress_rep 2

description: biological replicate 1 of 2, technical replicate 2 of 2, hydrogen peroxide treated mutant and wild type


title: log phase_rep 1

description: biological replicate 1 of 2, technical replicate 1 of 2, logarithmic phase of growth, mutant and wild type


title: acid + hydrogen peroxide stress_rep 2

description: biological replicate 1 of 2, technical replicate 2 of 2, acid + hydrogen peroxide treated mutant and wild type


title: early stationary phase_rep 3

description: biological replicate 2 of 2, early stationary phase growth, mutant and wild type

source_name: rpoE knockout mutant at early stationary phase of growth

source_name: wild type at early stationary phase of growth


title: acid stress_rep 1

description: biological replicate 1 of 2, technical replicate 1 of 2, acid treated mutant and wild type


title: early stationary phase_rep 2

description: biological replicate 1 of 2, technical replicate 2 of 2, early stationary phase growth, mutant and wild type


title: Prol_20_1

description: C2C12_proliferating; Time point: 20 min; replicate 1

value: 20 min; replicate 1


title: early stationary phase_rep 1

description: biological replicate 1 of 2, technical replicate 1 of 2, early stationary phase growth, mutant and wild type


title: PETAL_biolrep2

city: Gainesville

first: Andre

last: Chanderbali

state: FL

address: Museum Road

institute: Univrsity of Florida

description: Raw Data File Code: Poppy.132.2.Cy3

hyb_protocol: Arrays were hybridized in accordance with the Agilent Microarrray processing protocol

scan_protocol: Arrays were scanned using a Gene Pix 4000A scanner and the Gene Pix Pro 3.0.6 Software (Axon Instruments, now Molecular Devices, USA)

data_processing: Arrays were background-corrected and loess normalized within arrays and A-quantile normalized between arrays, using the Bioconductor package Limma. Significantly differentially expressed genes among the eight tissue samples were identifed using a one-way empirical Bayes ANOVA using single channel analysis while considering correlation between channels at each spot.

organism: Eschscholzia californica

source_name: Petals dissected from mature floral bud

label_protocol: RNA transcripts were labeled using the Low-input RNA Labeling Kit (Agilent Technologies)

growth_protocol: Sixteen Eschscholzia californica cv. ‘Aurantica Orange’ (J.L. Hudson Seedsman) plants were  grown from seeds in a controlled greenhouse environment at the Pennsylvania State University  (University Park, PA) under 16 hours light and watered and fertilized as needed.

extract_protocol: Total RNA was extracted from all tissue samples using the RNeasy Plant Mini Kit (Qiagen).

treatment_protocol: harvested tissues were flash frozen in liquid nitrogen

value: Petals dissected from mature floral bud

tag: tissue type

value: Reproductive


title: SMALLBUD_biolrep2

description: Raw Data File Code: Poppy.132.1.Cy5

source_name: Pre-microsporangial floral bud

value: Pre-microsporangial floral bud


title: SEPAL_biolrep2

description: Raw Data File Code: Poppy.132.2.Cy5

source_name: Sepals dissected from mature floral bud

value: Sepals dissected from mature floral bud


title: hydrogen peroxide stress_rep 1

description: biological replicate 1 of 2, technical replicate 1 of 2, hydrogen peroxide treated mutant and wild type


title: Prol_0_1

description: C2C12_proliferating; Time point: 0 min; replicate 1

value: 0 min; replicate 1


title: LEAF_biolrep2

description: Raw Data File Code: Poppy.132.1.Cy3

source_name: Leaves

value: Leaves

value: Vegetative


title: SEPAL_biolrep1

description: Raw Data File Code: Poppy.116.2.Cy3


title: LEAF_biolrep1

description: Raw Data File Code: Poppy.116.2.Cy5


title: MEDIUMBUD_biolrep1

description: Raw Data File Code: Poppy.116.1.Cy5

source_name: Pre-meiotic floral  buds

value: Pre-meiotic floral  buds


title: SMALLBUD_biolrep1

description: Raw Data File Code: Poppy.116.1.Cy3


title: CARPEL_biolrep1

description: Raw Data File Code: Poppy.115.2.Cy5

source_name: Carpels dissected  from mature floral bud


title: Prol_480_2

description: C2C12_proliferating; Time point: 480 min; replicate 2


title: TS15-H-1

description: Gene expression of TS15-H-1 iPS clone at passage 20

source_name: human iPS cells from adult dermal fibroblast HDF using SeV/TS15-MYC and TS-OCT4, SOX2 and KLF4.

value: iPS cells

value: female


title: PETAL_biolrep1

description: Raw Data File Code: Poppy.115.1.Cy5


title: FRUIT_biolrep1

description: Raw Data File Code: Poppy.115.2.Cy3

source_name: Young Fruits

value: Young Fruits


title: FRUIT_biolrep2

description: Raw Data File Code: Poppy.109.2.Cy5


title: Prol_480_1

description: C2C12_proliferating; Time point: 480 min; replicate 1

value: 480 min; replicate 1


title: Dif_10_1

description: C2C12_differentiated; Time point: 10 min; replicate 1

value: 10 min; replicate 1


title: MEDIUMBUD_biolrep2

description: Raw Data File Code: Poppy.109.2.Cy3


title: Prol_20_2

description: C2C12_proliferating; Time point: 20 min; replicate 2

value: 20 min; replicate 2


title: SEPAL_biolrep3

description: Raw Data File Code: Poppy.107.2.Cy5


title: PETAL_biolrep3

description: Raw Data File Code: Poppy.108.1.Cy3


title: FRUIT_biolrep3

description: Raw Data File Code: Poppy.108.2.Cy5


title: STAMEN_biolrep2

description: Raw Data File Code: Poppy.109.1.Cy5

source_name: Stamens dissected from mature floral bud


title: CARPEL_biolrep3

description: Raw Data File Code: Poppy.107.2.Cy3

value: Carpels dissected  from mature floral bud


title: SMALLBUD_biolrep3

description: Raw Data File Code: Poppy.108.1.Cy5


title: LEAF_biolrep3

description: Raw Data File Code: Poppy.108.2.Cy3


title: LEAF_biolrep4

description: Raw Data File Code: Poppy.106.2.Cy5


title: STAMEN_biolrep3

description: Raw Data File Code: Poppy.107.1.Cy5

value: Stamens dissected from mature floral bud


title: STAMEN_biolrep4

description: Raw Data File Code: Poppy.106.2.Cy3


title: SMALLBUD_biolrep4

description: Raw Data File Code: Poppy.105.2.Cy3


title: SEPAL_biolrep4

description: Raw Data File Code: Poppy.105.1.Cy3


title: PETAL_biolrep4

description: Raw Data File Code: Poppy.106.1.Cy5


title: FRUIT_biolrep4

description: Raw Data File Code: Poppy.106.1.Cy3


title: CARPEL_biolrep2

description: Raw Data File Code: Poppy.109.1.Cy3


title: MEDIUMBUD_biolrep4

description: Raw Data File Code: Poppy.105.1.Cy5


title: CARPEL_biolrep4

description: Raw Data File Code: Poppy.105.2.Cy5


title: Heat stress time 4 replicate 6 (H9-4)

city: Ottawa

first: Johanne

last: Lewis

state: ON

address: 30 Marie Curie

department: Biology

country: Canada

institute: University of Ottawa

description: Biological replicate 6of 6, heat stress, time 4

hyb_protocol: Equivalent amounts of cDNA from both Cy3 labeled individual and Cy5 labeled common reference samples were pooled and 26 ul of pooled cDNA was combined with 30 ul formamide based hybridization buffer (fomamide, 20X SSC, 20% SDS, 100X Denhardt’s solution, RNase/DNase free H20 (all chemicals and reagents from Sigma)) and 4 ml LNA dT blocker (Genisphere, Hatfield, PA, USA), incubated at 80°C for 10 minutes and then held at 65°C in a thermal cycler with a heated lid until hybridized to the array. Samples were gently pipetted onto the centre of the array, cover slips (Fisher) were carefully added and slides were placed in a water-tight hybridization chamber (Corning Life Sciences, Lowell, MA, USA). Hybridizations were performed in a 49°C water bath for 16 hours in the dark.

scan_protocol: Slides were scanned with a ScanArray 5000XL (Packard Biochip Technologies). The same laser power (90%) and photomultiplier tube (PMT) settings (80% Cy3 and 70% Cy5 to balance the channels) were used for all slides involved in this study. TIFF images containing fluorescence signal data for each array were loaded into ImaGene 7.5 software (BioDiscovery, El Segundo, CA, USA), which was then used for data extraction

data_processing:
Background correction, data transformation (conversion of background corrected values less than 0.01 to 0.01), Lowess normalization and subsequent analyses (calculation of fold change and compilation of dysregulated transcript lists) were performed in GeneSpring GX 9.0 (Agilent Technologies, Mississauga, ON, Canada)
The following four samples were excluded from the final analysis due to failed hybridization and insufficient RNA sample remaining to re-run the analysis: Control time 4 replicate 3 (C3-4), Control time 4 replicate 5 (C5-4), Control time 4 replicate 6 (C6-4), Control time 24 replicate 6 (C6-24).

organism: Oncorhynchus mykiss

source_name: experimental, heat stress

label_protocol: 7 mg of DNAse treated, column purified total RNA from either an experimental individual sample or the common reference pool were reverse transcribed (RT) for three hours at 46°C using an anchored oligo(dT) primer and a RT cocktail containing: 5x first strand buffer, 0.1 M DTT, 10 mM dNTP mix (containing one aminoallyl modified and one aminohexyl modified nucleotide), RNaseOUT Recombinant Ribonuclease Inhibitor (40 U/ml) and Superscript III reverse transcriptase (400 U/ml).The resulting cDNA was column purified with the S.N.A.P. column kit (Invitrogen), and the resulting purified cDNA was incubated with the provided coupling buffer for two hours at 4°C. Cyanine (Cy) 3 (used to label experimental samples) or Cy5 (used to label reference samples) monoreactive dyes (GE Healthcare, Piscataway, NJ, USA) were dissolved in room temperature dimethylsulfoxide (DMSO), added to respective samples, and incubated for two hours at room temperature

extract_protocol: Total RNA extracted using TRIzol. Manufacturer's protocol followed except initial ratio of TRIzol to sample was increased to 1.2ml TRIzol:100 mg tissue

treatment_protocol: blood was sampled via a dorsal aorta cannula into heparinized tubes. Centrifuged to separate RBCs from whiteblood cells and plasma. White bloodcells and plasma were removed and discarded. Remaining RBCs were flash frozen in liquid nitrogen and stored at -80C until used for total RNA extraction (less than 6 months).

value: Red blood cell (RBC)

tag: treatment group

value: Heat stress

tag: treatment time

source_name: Total RNA pooled from reference RBCs (blood extracted from six separate rainbow trout held at control conditions, 11C)


title: acid + hydrogen peroxide stress_rep 1

description: biological replicate 1 of 2, technical replicate 1 of 2, acid + hydrogen peroxide treated mutant and wild type

value: rpoE knockout

source_name: wild type under acid + hydrogen peroxide stress

value: wildtype


title: Heat stress time 24 replicate 6 (H9-24)

description: Biological replicate 6of 6, heat stress, time 24


title: Prol_30_2

description: C2C12_proliferating; Time point: 30 min; replicate 2

value: 30 min; replicate 2


title: Dif_20_2

description: C2C12_differentiated; Time point: 20 min; replicate 2


title: Heat stress time 0 replicate 6 (H9-0)

description: Biological replicate 6of 6, heat stress, time 0


title: Heat stress time 4 replicate 5 (H8-4)

description: Biological replicate 5of 6, heat stress, time 4


title: Heat stress time 4 replicate 4 (H7-4)

description: Biological replicate 4of 6, heat stress, time 4


title: Dif_30_2

description: C2C12_differentiated; Time point: 30 min; replicate 2


title: Heat stress time 4 replicate 3 (H6-4)

description: Biological replicate 3of 6, heat stress, time 4


title: Heat stress time 24 replicate 5 (H8-24)

description: Biological replicate 5of 6, heat stress, time 24


title: Heat stress time 24 replicate 24 (H7-24)

description: Biological replicate 4of 6, heat stress, time 24


title: Heat stress time 24 replicate 3 (H6-24)

description: Biological replicate 3of 6, heat stress, time 24


title: Heat stress time 24 replicate 2 (H4-24)

description: Biological replicate 2of 6, heat stress, time 24


title: Heat stress time 0 replicate 2 (H4-0)

description: Biological replicate 2of 6, heat stress, time 0


title: Heat stress time 0 replilcate 3 (H6-0)

description: Biological replicate 3of 6, heat stress, time 0


title: Control time 24 replicate 5 (C5-24)

description: Biological replicate 5of 6, control, time 24

source_name: experimental, control

value: Control


title: Control time 0 replicate 5 (C5-0)

description: Biological replicate 5of 6, control, time 0


title: Heat stress time 4 replicate 1 (H3-4)

description: Biological replicate 1of 6, heat stress, time 4


title: Heat stress time 4 replicate 2 (H4-4)

description: Biological replicate 2of 6, heat stress, time 4


title: Control time 0 replicate 6 (C6-0)

description: Biological replicate 6of 6, control, time 0


title: Control time 4 replicate 4 (C4-4)

description: Biological replicate 4of 6, control, time 4


title: Heat stress time 24 replicate 1 (H3-24)

description: Biological replicate 1of 6, heat stress, time 24


title: Heat stress time 0 replicate 1 (H3-0)

description: Biological replicate 1of 6, heat stress, time 0


title: Control time 24 replicate 4 (C4-24)

description: Biological replicate 4of 6, control, time 24


title: Dif_60_1

description: C2C12_differentiated; Time point: 60 min; replicate 1

value: 60 min; replicate 1


title: Dif_30_1

description: C2C12_differentiated; Time point: 30 min; replicate 1

value: 30 min; replicate 1


title: STAMEN_biolrep1

description: Raw Data File Code: Poppy.115.1.Cy3

tag: tissue

value: Reproductive


title: Control time 24 replicate 3 (C3-24)

description: Biological replicate 3of 6, control, time 24


title: Control time 0 replicate 4 (C4-0)

description: Biological replicate 4of 6, control, time 0


title: Control time 0 replicate 2 (C2-0)

description: Biological replicate 2of 6, control, time 0


title: Control time 0 replicate 3 (C3-0)

description: Biological replicate 3of 6, control, time 0


title: Heat stress time 0 replicate 5 (H8-0)

description: Biological replicate 5of 6, heat stress, time 0


title: Control time 4 replicate 2 (C2-4)

description: Biological replicate 2of 6, control, time 4


title: Control time 24 replicate 2 (C2-24)

description: Biological replicate 2of 6, control, time 24


title: baseline_45familylinkage_GM13355_rep1

city: Philadelphia

first: Renuka

last: Nayak

state: PA

address: 3516 Civic Center Blvd

institute: HHMI, University of Pennsylvania

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13355&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM13355.

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.

source_name: Lymphoblastoid cell lines derived from GM13355

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

growth_protocol: The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.

extract_protocol: RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions

tag: coriell cell line repository identifier

value: lymphoblastoid


title: baseline_45familylinkage_GM13133_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13133&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM13133.

source_name: Lymphoblastoid cell lines derived from GM13133

tag: cell type


title: Control time 0 replicate 1 (C1-0)

description: Biological replicate 1of 6, control, time 0


title: Control time 4 replicate 1 (C1-4)

description: Biological replicate 1of 6, control, time 4


title: baseline_45familylinkage_GM13132_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13132&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM13132.

source_name: Lymphoblastoid cell lines derived from GM13132


title: Control time 24 replicate 1 (C1-24)

description: Biological replicate 1of 6, control, time 24


title: baseline_45familylinkage_GM13131_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13131&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM13131.

source_name: Lymphoblastoid cell lines derived from GM13131


title: baseline_45familylinkage_GM13051_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13051&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM13051.

source_name: Lymphoblastoid cell lines derived from GM13051


title: baseline_45familylinkage_GM13051_rep2


title: baseline_45familylinkage_GM13053_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13053&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM13053.

source_name: Lymphoblastoid cell lines derived from GM13053


title: baseline_45familylinkage_GM13053_rep1


title: baseline_45familylinkage_GM13044_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13044&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM13044.

source_name: Lymphoblastoid cell lines derived from GM13044


title: baseline_45familylinkage_GM13047_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13047&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM13047.

source_name: Lymphoblastoid cell lines derived from GM13047


title: baseline_45familylinkage_GM13044_rep1


title: baseline_45familylinkage_GM13047_rep2


title: baseline_45familylinkage_GM13054_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13054&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM13054.

source_name: Lymphoblastoid cell lines derived from GM13054


title: baseline_45familylinkage_GM12924_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12924&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12924.

source_name: Lymphoblastoid cell lines derived from GM12924


title: baseline_45familylinkage_GM13130_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13130&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM13130.

source_name: Lymphoblastoid cell lines derived from GM13130


title: baseline_45familylinkage_GM12923_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12923&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12923.

source_name: Lymphoblastoid cell lines derived from GM12923


title: baseline_45familylinkage_GM13042_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13042&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM13042.

source_name: Lymphoblastoid cell lines derived from GM13042


title: baseline_45familylinkage_GM12924_rep1


title: baseline_45familylinkage_GM13042_rep2


title: baseline_45familylinkage_GM12923_rep1


title: baseline_45familylinkage_GM12921_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12921&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12921.

source_name: Lymphoblastoid cell lines derived from GM12921


title: baseline_45familylinkage_GM12921_rep1


title: baseline_45familylinkage_GM12922_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12922&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12922.

source_name: Lymphoblastoid cell lines derived from GM12922


title: baseline_45familylinkage_GM12922_rep1


title: Heat stress time 0 replicate 4 (H7-0)

description: Biological replicate 4of 6, heat stress, time 0

source_name: experimental, heat stress

source_name: Total RNA pooled from reference RBCs (blood extracted from six separate rainbow trout held at control conditions, 11C)


title: baseline_45familylinkage_GM12915_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12915&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12915.

source_name: Lymphoblastoid cell lines derived from GM12915


title: baseline_45familylinkage_GM12916_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12916&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12916.

source_name: Lymphoblastoid cell lines derived from GM12916


title: baseline_45familylinkage_GM12917_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12917&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12917.

source_name: Lymphoblastoid cell lines derived from GM12917


title: baseline_45familylinkage_GM12919_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12919&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12919.

source_name: Lymphoblastoid cell lines derived from GM12919


title: MEDIUMBUD_biolrep3

description: Raw Data File Code: Poppy.107.1.Cy3

source_name: Pre-meiotic floral  buds

value: Pre-meiotic floral  buds


title: baseline_45familylinkage_GM12913_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12913&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12913.

source_name: Lymphoblastoid cell lines derived from GM12913


title: baseline_45familylinkage_GM12920_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12920&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12920.

source_name: Lymphoblastoid cell lines derived from GM12920


title: baseline_45familylinkage_GM12908_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12908&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12908.

source_name: Lymphoblastoid cell lines derived from GM12908


title: baseline_45familylinkage_GM12910_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12910&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12910.

source_name: Lymphoblastoid cell lines derived from GM12910


title: baseline_45familylinkage_GM12914_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12914&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12914.

source_name: Lymphoblastoid cell lines derived from GM12914


title: baseline_45familylinkage_GM12912_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12912&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12912.

source_name: Lymphoblastoid cell lines derived from GM12912


title: baseline_45familylinkage_GM12909_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12909&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12909.

source_name: Lymphoblastoid cell lines derived from GM12909


title: baseline_45familylinkage_GM12911_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12911&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12911.

source_name: Lymphoblastoid cell lines derived from GM12911


title: baseline_45familylinkage_GM12911_rep2


title: baseline_45familylinkage_GM12898_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12898&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12898.

source_name: Lymphoblastoid cell lines derived from GM12898


title: baseline_45familylinkage_GM12899_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12899&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12899.

source_name: Lymphoblastoid cell lines derived from GM12899


title: baseline_45familylinkage_GM12901_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12901&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12901.

source_name: Lymphoblastoid cell lines derived from GM12901


title: baseline_45familylinkage_GM12907_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12907&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12907.

source_name: Lymphoblastoid cell lines derived from GM12907


title: baseline_45familylinkage_GM12900_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12900&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12900.

source_name: Lymphoblastoid cell lines derived from GM12900


title: baseline_45familylinkage_GM12905_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12905&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12905.

source_name: Lymphoblastoid cell lines derived from GM12905


title: baseline_45familylinkage_GM12906_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12906&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12906.

source_name: Lymphoblastoid cell lines derived from GM12906


title: baseline_45familylinkage_GM12890_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12890&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12890.

source_name: Lymphoblastoid cell lines derived from GM12890


title: baseline_45familylinkage_GM12903_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12903&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12903.

source_name: Lymphoblastoid cell lines derived from GM12903


title: baseline_45familylinkage_GM12902_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12902&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12902.

source_name: Lymphoblastoid cell lines derived from GM12902


title: baseline_45familylinkage_GM12912_rep2


title: baseline_45familylinkage_GM12892_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12892&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12892.

source_name: Lymphoblastoid cell lines derived from GM12892


title: baseline_45familylinkage_GM12897_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12897&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12897.

source_name: Lymphoblastoid cell lines derived from GM12897


title: baseline_45familylinkage_GM12883_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12883&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12883.

source_name: Lymphoblastoid cell lines derived from GM12883


title: baseline_45familylinkage_GM12887_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12887&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12887.

source_name: Lymphoblastoid cell lines derived from GM12887


title: baseline_45familylinkage_GM12890_rep1


title: baseline_45familylinkage_GM12889_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12889&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12889.

source_name: Lymphoblastoid cell lines derived from GM12889


title: baseline_45familylinkage_GM12882_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12882&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12882.

source_name: Lymphoblastoid cell lines derived from GM12882


title: baseline_45familylinkage_GM12891_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12891&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12891.

source_name: Lymphoblastoid cell lines derived from GM12891


title: baseline_45familylinkage_GM12885_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12885&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12885.

source_name: Lymphoblastoid cell lines derived from GM12885


title: baseline_45familylinkage_GM12886_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12886&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12886.

source_name: Lymphoblastoid cell lines derived from GM12886


title: baseline_45familylinkage_GM12875_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12875&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12875.

source_name: Lymphoblastoid cell lines derived from GM12875


title: baseline_45familylinkage_GM12875_rep2


title: baseline_45familylinkage_GM12876_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12876&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12876.

source_name: Lymphoblastoid cell lines derived from GM12876


title: baseline_45familylinkage_GM12872_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12872&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12872.

source_name: Lymphoblastoid cell lines derived from GM12872


title: baseline_45familylinkage_GM12872_rep1


title: baseline_45familylinkage_GM12880_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12880&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12880.

source_name: Lymphoblastoid cell lines derived from GM12880


title: baseline_45familylinkage_GM12874_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12874&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12874.

source_name: Lymphoblastoid cell lines derived from GM12874


title: baseline_45familylinkage_GM12874_rep2


title: baseline_45familylinkage_GM12871_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12871&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12871.

source_name: Lymphoblastoid cell lines derived from GM12871


title: baseline_45familylinkage_GM12870_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12870&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12870.

source_name: Lymphoblastoid cell lines derived from GM12870


title: baseline_45familylinkage_GM12881_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12881&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12881.

source_name: Lymphoblastoid cell lines derived from GM12881


title: baseline_45familylinkage_GM12869_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12869&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12869.

source_name: Lymphoblastoid cell lines derived from GM12869


title: baseline_45familylinkage_GM12868_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12868&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12868.

source_name: Lymphoblastoid cell lines derived from GM12868


title: baseline_45familylinkage_GM12865_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12865&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12865.

source_name: Lymphoblastoid cell lines derived from GM12865


title: baseline_45familylinkage_GM12864_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12864&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12864.

source_name: Lymphoblastoid cell lines derived from GM12864


title: baseline_45familylinkage_GM12867_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12867&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12867.

source_name: Lymphoblastoid cell lines derived from GM12867


title: baseline_45familylinkage_GM12864_rep1


title: baseline_45familylinkage_GM12878_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12878.

source_name: Lymphoblastoid cell lines derived from GM12878


title: baseline_45familylinkage_GM12873_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12873&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12873.

source_name: Lymphoblastoid cell lines derived from GM12873


title: baseline_45familylinkage_GM12873_rep2


title: baseline_45familylinkage_GM12866_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12866&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12866.

source_name: Lymphoblastoid cell lines derived from GM12866


title: baseline_45familylinkage_GM12863_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12863&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12863.

source_name: Lymphoblastoid cell lines derived from GM12863


title: baseline_45familylinkage_GM12861_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12861&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12861.

source_name: Lymphoblastoid cell lines derived from GM12861


title: baseline_45familylinkage_GM12857_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12857&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12857.

source_name: Lymphoblastoid cell lines derived from GM12857


title: baseline_45familylinkage_GM12862_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12862&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12862.

source_name: Lymphoblastoid cell lines derived from GM12862


title: baseline_45familylinkage_GM12854_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12854&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12854.

source_name: Lymphoblastoid cell lines derived from GM12854


title: baseline_45familylinkage_GM12853_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12853&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12853.

source_name: Lymphoblastoid cell lines derived from GM12853


title: baseline_45familylinkage_GM12856_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12856&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12856.

source_name: Lymphoblastoid cell lines derived from GM12856


title: baseline_45familylinkage_GM12844_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12844&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12844.

source_name: Lymphoblastoid cell lines derived from GM12844


title: baseline_45familylinkage_GM12860_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12860&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12860.

source_name: Lymphoblastoid cell lines derived from GM12860


title: baseline_45familylinkage_GM12859_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12859&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12859.

source_name: Lymphoblastoid cell lines derived from GM12859


title: baseline_45familylinkage_GM12847_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12847&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12847.

source_name: Lymphoblastoid cell lines derived from GM12847


title: baseline_45familylinkage_GM12843_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12843&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12843.

source_name: Lymphoblastoid cell lines derived from GM12843


title: baseline_45familylinkage_GM12842_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12842&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12842.

source_name: Lymphoblastoid cell lines derived from GM12842


title: baseline_45familylinkage_GM12843_rep2


title: baseline_45familylinkage_GM12841_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12841&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12841.

source_name: Lymphoblastoid cell lines derived from GM12841


title: baseline_45familylinkage_GM12841_rep1


title: baseline_45familylinkage_GM12832_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12832&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12832.

source_name: Lymphoblastoid cell lines derived from GM12832


title: baseline_45familylinkage_GM12836_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12836&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12836.

source_name: Lymphoblastoid cell lines derived from GM12836


title: baseline_45familylinkage_GM12840_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12840&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12840.

source_name: Lymphoblastoid cell lines derived from GM12840


title: baseline_45familylinkage_GM12839_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12839&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12839.

source_name: Lymphoblastoid cell lines derived from GM12839


title: baseline_45familylinkage_GM12833_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12833&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12833.

source_name: Lymphoblastoid cell lines derived from GM12833


title: baseline_45familylinkage_GM12837_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12837&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12837.

source_name: Lymphoblastoid cell lines derived from GM12837


title: baseline_45familylinkage_GM12835_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12835&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12835.

source_name: Lymphoblastoid cell lines derived from GM12835


title: baseline_45familylinkage_GM12838_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12838&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12838.

source_name: Lymphoblastoid cell lines derived from GM12838


title: baseline_45familylinkage_GM12852_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12852&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12852.

source_name: Lymphoblastoid cell lines derived from GM12852


title: baseline_45familylinkage_GM12832_rep2


title: baseline_45familylinkage_GM12842_rep1


title: baseline_45familylinkage_GM12848_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12848&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12848.

source_name: Lymphoblastoid cell lines derived from GM12848


title: baseline_45familylinkage_GM12840_rep2


title: baseline_45familylinkage_GM12831_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12831&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12831.

source_name: Lymphoblastoid cell lines derived from GM12831


title: baseline_45familylinkage_GM12829_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12829&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12829.

source_name: Lymphoblastoid cell lines derived from GM12829


title: baseline_45familylinkage_GM12831_rep2


title: baseline_45familylinkage_GM12830_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12830&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12830.

source_name: Lymphoblastoid cell lines derived from GM12830


title: baseline_45familylinkage_GM12830_rep2


title: baseline_45familylinkage_GM12828_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12828&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12828.

source_name: Lymphoblastoid cell lines derived from GM12828


title: baseline_45familylinkage_GM12828_rep1


title: baseline_45familylinkage_GM12827_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12827&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12827.

source_name: Lymphoblastoid cell lines derived from GM12827


title: baseline_45familylinkage_GM12827_rep2


title: baseline_45familylinkage_GM12822_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12822&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12822.

source_name: Lymphoblastoid cell lines derived from GM12822


title: baseline_45familylinkage_GM12821_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12821&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12821.

source_name: Lymphoblastoid cell lines derived from GM12821


title: baseline_45familylinkage_GM12824_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12824&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12824.

source_name: Lymphoblastoid cell lines derived from GM12824


title: baseline_45familylinkage_GM12820_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12820&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12820.

source_name: Lymphoblastoid cell lines derived from GM12820


title: baseline_45familylinkage_GM12823_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12823&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12823.

source_name: Lymphoblastoid cell lines derived from GM12823


title: baseline_45familylinkage_GM12829_rep2


title: baseline_45familylinkage_GM12825_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12825&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12825.

source_name: Lymphoblastoid cell lines derived from GM12825


title: baseline_45familylinkage_GM12826_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12826&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12826.

source_name: Lymphoblastoid cell lines derived from GM12826


title: baseline_45familylinkage_GM12819_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12819&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12819.

source_name: Lymphoblastoid cell lines derived from GM12819


title: baseline_45familylinkage_GM12814_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12814&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12814.

source_name: Lymphoblastoid cell lines derived from GM12814


title: baseline_45familylinkage_GM12814_rep2


title: baseline_45familylinkage_GM12813_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12813&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12813.

source_name: Lymphoblastoid cell lines derived from GM12813


title: baseline_45familylinkage_GM12812_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12812&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12812.

source_name: Lymphoblastoid cell lines derived from GM12812


title: baseline_45familylinkage_GM12815_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12815&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12815.

source_name: Lymphoblastoid cell lines derived from GM12815


title: baseline_45familylinkage_GM12817_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12817&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12817.

source_name: Lymphoblastoid cell lines derived from GM12817


title: baseline_45familylinkage_GM12812_rep1


title: baseline_45familylinkage_GM12817_rep2


title: baseline_45familylinkage_GM12813_rep2


title: baseline_45familylinkage_GM12818_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12818&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12818.

source_name: Lymphoblastoid cell lines derived from GM12818


title: baseline_45familylinkage_GM12809_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12809&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12809.

source_name: Lymphoblastoid cell lines derived from GM12809


title: baseline_45familylinkage_GM12815_rep1


title: baseline_45familylinkage_GM12808_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12808&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12808.

source_name: Lymphoblastoid cell lines derived from GM12808


title: baseline_45familylinkage_GM12818_rep1


title: baseline_45familylinkage_GM12807_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12807&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12807.

source_name: Lymphoblastoid cell lines derived from GM12807


title: baseline_45familylinkage_GM12805_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12805&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12805.

source_name: Lymphoblastoid cell lines derived from GM12805


title: baseline_45familylinkage_GM12806_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12806&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12806.

source_name: Lymphoblastoid cell lines derived from GM12806


title: baseline_45familylinkage_GM12802_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12802&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12802.

source_name: Lymphoblastoid cell lines derived from GM12802


title: baseline_45familylinkage_GM12803_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12803&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12803.

source_name: Lymphoblastoid cell lines derived from GM12803


title: baseline_45familylinkage_GM12804_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12804&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12804.

source_name: Lymphoblastoid cell lines derived from GM12804


title: baseline_45familylinkage_GM12802_rep2


title: baseline_45familylinkage_GM12810_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12810&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12810.

source_name: Lymphoblastoid cell lines derived from GM12810


title: baseline_45familylinkage_GM12776_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12776&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12776.

source_name: Lymphoblastoid cell lines derived from GM12776


title: baseline_45familylinkage_GM12778_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12778&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12778.

source_name: Lymphoblastoid cell lines derived from GM12778


title: baseline_45familylinkage_GM12777_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12777&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12777.

source_name: Lymphoblastoid cell lines derived from GM12777


title: baseline_45familylinkage_GM12777_rep1


title: baseline_45familylinkage_GM12776_rep2


title: baseline_45familylinkage_GM12775_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12775&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12775.

source_name: Lymphoblastoid cell lines derived from GM12775


title: baseline_45familylinkage_GM12801_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12801&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12801.

source_name: Lymphoblastoid cell lines derived from GM12801


title: baseline_45familylinkage_GM12773_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12773&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12773.

source_name: Lymphoblastoid cell lines derived from GM12773


title: baseline_45familylinkage_GM12768_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12768&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12768.

source_name: Lymphoblastoid cell lines derived from GM12768


title: baseline_45familylinkage_GM12765_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12765&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12765.

source_name: Lymphoblastoid cell lines derived from GM12765


title: baseline_45familylinkage_GM12769_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12769&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12769.

source_name: Lymphoblastoid cell lines derived from GM12769


title: baseline_45familylinkage_GM12775_rep2


title: baseline_45familylinkage_GM12774_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12774&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12774.

source_name: Lymphoblastoid cell lines derived from GM12774


title: baseline_45familylinkage_GM12766_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12766&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12766.

source_name: Lymphoblastoid cell lines derived from GM12766


title: baseline_45familylinkage_GM12766_rep1


title: baseline_45familylinkage_GM12801_rep1


title: baseline_45familylinkage_GM12771_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12771&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12771.

source_name: Lymphoblastoid cell lines derived from GM12771


title: baseline_45familylinkage_GM12767_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12767&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12767.

source_name: Lymphoblastoid cell lines derived from GM12767


title: baseline_45familylinkage_GM12770_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12770&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12770.

source_name: Lymphoblastoid cell lines derived from GM12770


title: baseline_45familylinkage_GM12767_rep1


title: baseline_45familylinkage_GM12764_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12764&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12764.

source_name: Lymphoblastoid cell lines derived from GM12764


title: baseline_45familylinkage_GM12763_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12763&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12763.

source_name: Lymphoblastoid cell lines derived from GM12763


title: baseline_45familylinkage_GM12772_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12772&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12772.

source_name: Lymphoblastoid cell lines derived from GM12772


title: baseline_45familylinkage_GM12761_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12761&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12761.

source_name: Lymphoblastoid cell lines derived from GM12761


title: baseline_45familylinkage_GM12761_rep1


title: baseline_45familylinkage_GM12760_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12760&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12760.

source_name: Lymphoblastoid cell lines derived from GM12760


title: baseline_45familylinkage_GM12763_rep1


title: baseline_45familylinkage_GM12760_rep1


title: baseline_45familylinkage_GM12757_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12757&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12757.

source_name: Lymphoblastoid cell lines derived from GM12757


title: baseline_45familylinkage_GM12762_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12762&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12762.

source_name: Lymphoblastoid cell lines derived from GM12762


title: baseline_45familylinkage_GM12756_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12756&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12756.

source_name: Lymphoblastoid cell lines derived from GM12756


title: baseline_45familylinkage_GM12755_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12755&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12755.

source_name: Lymphoblastoid cell lines derived from GM12755


title: baseline_45familylinkage_GM12754_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12754&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12754.

source_name: Lymphoblastoid cell lines derived from GM12754


title: baseline_45familylinkage_GM12762_rep1


title: baseline_45familylinkage_GM12758_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12758&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12758.

source_name: Lymphoblastoid cell lines derived from GM12758


title: baseline_45familylinkage_GM12834_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12834&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12834.

source_name: Lymphoblastoid cell lines derived from GM12834


title: baseline_45familylinkage_GM12746_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12746&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12746.

source_name: Lymphoblastoid cell lines derived from GM12746


title: baseline_45familylinkage_GM12747_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12747&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12747.

source_name: Lymphoblastoid cell lines derived from GM12747


title: baseline_45familylinkage_GM12745_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12745&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12745.

source_name: Lymphoblastoid cell lines derived from GM12745


title: baseline_45familylinkage_GM12739_rep2

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12739&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12739.

source_name: Lymphoblastoid cell lines derived from GM12739


title: baseline_45familylinkage_GM12749_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12749&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12749.

source_name: Lymphoblastoid cell lines derived from GM12749


title: baseline_45familylinkage_GM12751_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12751&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12751.

source_name: Lymphoblastoid cell lines derived from GM12751


title: baseline_45familylinkage_GM12748_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12748&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12748.

source_name: Lymphoblastoid cell lines derived from GM12748


title: baseline_45familylinkage_GM12716_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12716&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12716.

source_name: Lymphoblastoid cell lines derived from GM12716


title: baseline_45familylinkage_GM12744_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12744&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12744.

source_name: Lymphoblastoid cell lines derived from GM12744


title: baseline_45familylinkage_GM12748_rep2


title: baseline_45familylinkage_GM12713_rep1

description:
http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12713&PgId=166
Gene expression data at baseline from lymphoblastoid cells of individual GM12713.

source_name: Lymphoblastoid cell lines derived from GM12713