title: 857-580T

description: Original Sample title: 901777


title: 853-480T

status: Public on May 24 2011

type: genomic

city: Oviedo

first: Agustin

middle: F

last: Fernandez

email: affernandez@hca.es, agusff@gmail.com

state: Asturias

address: Avenida de Roma s/n

department: IUOPA

country: Spain

institute: Oviedo University-HUCA

description: Original Sample title: 439320

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol

data_processing: average beta value = Max(Cy5,0)/[Max(Cy3,0) + Max(Cy5,0) + 100]

label: Cy3, Cy5

molecule: genomic DNA

organism: Homo sapiens

source_name: colon tumor tissue

label_protocol: Standard Illumina labelling protocol

extract_protocol: Total DNA was isolated by standard procedures

tag: gender

value: female

tag: age

tag: ethnicity

value: European

tag: disease state

value: colon cancer

tag: biomaterial

value: colon tumor tissue


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description: Original Sample title: 770349


title: 856-565T

description: Original Sample title: 503593

value: male


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description: Original Sample title: 694691


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description: Original Sample title: 519246


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description: Original Sample title: 811126


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description: Original Sample title: 149161


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description: Original Sample title: 10490

source_name: leukocytes

value: healthy

value: leukocytes


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description: Original Sample title: 611219


title: 850-395T

description: Original Sample title: 734796


title: 844-249T

description: Original Sample title: 838541


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description: Original Sample title: 624889

source_name: colon normal tissue

value: colon normal tissue


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description: Original Sample title: 266976


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description: Original Sample title: 754500


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description: Original Sample title: 817462


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description: Original Sample title: 503593


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description: Original Sample title: 439320


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description: Original Sample title: 10420


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description: Original Sample title: 820925


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description: Original Sample title: B05-1033

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value: muscle normal tissue


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description: Original Sample title: B03-18345


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description: Original Sample title: 07-1461


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title: 815-MIO-C2

description: Original Sample title: B99-13676


title: 812-MIO6

description: Original Sample title: B05-21593

source_name: muscle MIO tissue

value: myopathy

value: muscle MIO tissue


title: 811-MIO5

description: Original Sample title: B04-21211


title: 804-IBM5

description: Original Sample title: B05-1029

source_name: muscle IBM tissue

value: muscle IBM tissue


title: 802-IBM3

description: Original Sample title: B01-11814


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description: Original Sample title: B05-495


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description: Original Sample title: B99-8851

source_name: muscle DOF tissue

value: muscle DOF tissue


title: 792-AML7

description: Original Sample title: 1085

source_name: AML neoplasia

value: AML

value: AML neoplasia


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description: Original Sample title: SW48

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value: colon cell line


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description: Original Sample title: B07-4551


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description: Original Sample title: ID_326N


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description: Original Sample title: ID_434N


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description: Original Sample title: ID_379T


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description: Original Sample title: ID_435T


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description: Original Sample title: ID_434T


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description: Original Sample title: 32


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description: Original Sample title: ID_379N


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description: Original Sample title: ID_135N


title: 698-ID_198T

description: Original Sample title: ID_198T


title: 699-ID_432T

description: Original Sample title: ID_432T


title: 6-RAJI

description: Original Sample title: RAJI

source_name: lymphoma cell line

value: lymphoma

value: lymphoma cell line


title: 706-ID_157N

description: Original Sample title: ID_157N

value: European


title: 718-ID_17N

description: Original Sample title: ID_17N

value: female


title: 700-ID_427T

description: Original Sample title: ID_427T

value: colon cancer

value: colon tumor tissue


title: 695-ID_427N

description: Original Sample title: ID_427N

value: male

value: healthy


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description: Original Sample title: ID_417N

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description: Original Sample title: 29

value: leukocytes


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description: Original Sample title: ID_271N


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description: Original Sample title: 14


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description: Original Sample title: NormalBreast

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value: breast normal tissue


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description: Original Sample title: PBC24

source_name: blood PBC tissue

value: primary bilary cirrhosis

value: blood PBC tissue


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description: Original Sample title: ID_323T


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description: Original Sample title: 27


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description: Original Sample title: ID_271T


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description: Original Sample title: PBC2


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description: Original Sample title: 12


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description: Original Sample title: SSC50

source_name: blood SCC tissue

value: systemic sclerosis

value: blood SCC tissue


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description: Original Sample title: PBC1


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description: Original Sample title: 11


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description: Original Sample title: SSC67


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description: Original Sample title: MLL-N26

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value: normal tissue


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description: Original Sample title: SSC49


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description: Original Sample title: 10


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description: Original Sample title: MLL-30

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value: MLL

value: MLL neoplasia


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description: Original Sample title: MLL-35


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description: Original Sample title: MLL-31


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description: Original Sample title: MLL-13


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description: Original Sample title: H1155wt

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value: lung cancer

value: lung cell line


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description: Original Sample title: MLL-10

value: European


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description: Original Sample title: 6


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description: Original Sample title: H1395wt


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value: lung tumor tissue


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description: Original Sample title: 132_mas

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description: Original Sample title: 121_mas


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description: Original Sample title: 4

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description: Original Sample title: ID_450T

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value: colon cancer

value: colon tumor tissue


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description: Original Sample title: -232


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description: Original Sample title: 10932

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value: colon normal tissue


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description: Original Sample title: 16


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description: Original Sample title: 3577


title: 531-ENormal-6

description: Original Sample title: ENormal-6

source_name: endometrium normal tissue

value: endometrium normal tissue


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description: Original Sample title: cnn36


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description: Original Sample title: 04c2587


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description: Original Sample title: Sh1Neuron

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value: differentiated embryonic stem cell line


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description: Original Sample title: 3695


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description: Original Sample title: Shef-1SpDiff


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description: Original Sample title: ENormal-2


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description: Original Sample title: 3391


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description: Original Sample title: Shef-1

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value: embryonic stem cell line


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description: Original Sample title: cnn43


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description: Original Sample title: HEnd-5

source_name: endometrium hyperplasia tissue

value: endometrial hyperplasia

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description: Original Sample title: HEnd-6


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description: Original Sample title: HEnd-2


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description: Original Sample title: HEnd-4


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description: Original Sample title: HEnd-1


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description: Original Sample title: TEnd-81

source_name: endometrium tumor tissue

value: endometrial cancer

value: endometrium tumor tissue


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description: Original Sample title: HEnd-3


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description: Original Sample title: Shef-5


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description: Original Sample title: TEnd-77


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description: Original Sample title: TEnd-76


title: 51-cnn30

description: Original Sample title: cnn30


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description: Original Sample title: TEnd-78


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description: Original Sample title: TEnd-75


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description: Original Sample title: Shef-7


title: 512-TEnd-73

description: Original Sample title: TEnd-73


title: 511-TEnd-72

description: Original Sample title: TEnd-72


title: 508-TEnd-69

description: Original Sample title: TEnd-69


title: 513-TEnd-74

description: Original Sample title: TEnd-74


title: 506-TEnd-67

description: Original Sample title: TEnd-67


title: 510-TEnd-71

description: Original Sample title: TEnd-71


title: 509-TEnd-70

description: Original Sample title: TEnd-70


title: 50-cla283

description: Original Sample title: cla283


title: 507-TEnd-68

description: Original Sample title: TEnd-68


title: 503-TEnd-64

description: Original Sample title: TEnd-64


title: 505-TEnd-66

description: Original Sample title: TEnd-66


title: 504-TEnd-65

description: Original Sample title: TEnd-65


title: 502-TEnd-63

description: Original Sample title: TEnd-63


title: 4-HL60

description: Original Sample title: HL60

source_name: leukemia cell line

value: leukemia

value: leukemia cell line


title: 500-TEnd-61

description: Original Sample title: TEnd-61

value: European


title: 499-H14

description: Original Sample title: H14


title: 501-Shef-4

description: Original Sample title: Shef-4


title: 498-TEnd-59

description: Original Sample title: TEnd-59

value: female


title: 496-TEnd-57

description: Original Sample title: TEnd-57


title: 495-TEnd-56

description: Original Sample title: TEnd-56


title: 494-TEnd-55

description: Original Sample title: TEnd-55


title: 491-TEnd-52

description: Original Sample title: TEnd-52


title: 488-EH7

description: Original Sample title: H7


title: 484-TEnd-45

description: Original Sample title: TEnd-45


title: 493-TEnd-54

description: Original Sample title: TEnd-54


title: 48-cla222

description: Original Sample title: cla222


title: 489-TEnd-50

description: Original Sample title: TEnd-50


title: 47-cla213

description: Original Sample title: cla213


title: 486-MSCgrasa

description: Original Sample title: MSCgrasa

source_name: adult stem cell

value: adult stem cell


title: 479-TEnd-99

description: Original Sample title: TEnd-99


title: 483-TEnd-44

description: Original Sample title: TEnd-44


title: 477-TEnd-37

description: Original Sample title: TEnd-37


title: 478-TEnd-98

description: Original Sample title: TEnd-98


title: 49-cla282

description: Original Sample title: cla282

value: healthy


title: 497-TEnd-58

description: Original Sample title: TEnd-58


title: 475-TEnd-35

description: Original Sample title: TEnd-35


title: 474-TEnd-96

description: Original Sample title: TEnd-96


title: 492-TEnd-53

description: Original Sample title: TEnd-53


title: 469-TEnd-29

description: Original Sample title: TEnd-29


title: 46-cla209

description: Original Sample title: cla209


title: 473-TEnd-33

description: Original Sample title: TEnd-33


title: 472-TEnd-32

description: Original Sample title: TEnd-32


title: 482-TEnd-43

description: Original Sample title: TEnd-43


title: 468-TEnd-93

description: Original Sample title: TEnd-93


title: 464-TEnd-24

description: Original Sample title: TEnd-24


title: 467-TEnd-27

description: Original Sample title: TEnd-27


title: 465-TEnd-25

description: Original Sample title: TEnd-25


title: 463-TEnd-92

description: Original Sample title: TEnd-92


title: 461-TEnd-91

description: Original Sample title: TEnd-91


title: 460-TEnd-90

description: Original Sample title: TEnd-90


title: 466-TEnd-26

description: Original Sample title: TEnd-26


title: 459-TEnd-20

description: Original Sample title: TEnd-20


title: 462-Heart-1

description: Original Sample title: Heart-1

source_name: heart normal tissue

value: heart normal tissue


title: 454-TEnd-85

description: Original Sample title: TEnd-85


title: 457-TEnd-88

description: Original Sample title: TEnd-88


title: 455-TEnd-86

description: Original Sample title: TEnd-86


title: 44-cla207

description: Original Sample title: cla207


title: 456-TEnd-87

description: Original Sample title: TEnd-87


title: 458-TEnd-89

description: Original Sample title: TEnd-89


title: 449-TEnd-11

description: Original Sample title: TEnd-11


title: 476-TEnd-97

description: Original Sample title: TEnd-97


title: 452-TEnd-13

description: Original Sample title: TEnd-13


title: 453-TEnd-84

description: Original Sample title: TEnd-84


title: 451-TEnd-12

description: Original Sample title: TEnd-12


title: 450-Heart

description: Original Sample title: Heart


title: 448-TEnd-10

description: Original Sample title: TEnd-10


title: 446-TEnd-8

description: Original Sample title: TEnd-8


title: 447-TEnd-83

description: Original Sample title: TEnd-83


title: 445-TEnd-82

description: Original Sample title: TEnd-82


title: 437-U-937

description: Original Sample title: U-937

source_name: lymphoma cell line

value: lymphoma

value: lymphoma cell line


title: 442-TEnd-4

description: Original Sample title: TEnd-4


title: 444-TEnd-6

description: Original Sample title: TEnd-6


title: 443-TEnd-5

description: Original Sample title: TEnd-5


title: 435-P4

description: Original Sample title: P4

source_name: glia tumor tissue

value: glioma

value: glia tumor tissue


title: 43-cla205

description: Original Sample title: cla205

value: leukocytes


title: 439-TEnd-1

description: Original Sample title: TEnd-1


title: 490-TEnd-51

description: Original Sample title: TEnd-51


title: 441-TEnd-3

description: Original Sample title: TEnd-3


title: 432-P1

description: Original Sample title: P1

value: male


title: 433-P2

description: Original Sample title: P2


title: 434-P3

description: Original Sample title: P3


title: 426-H5

description: Original Sample title: H5


title: 436-P5

description: Original Sample title: P5


title: 427-H6

description: Original Sample title: H6


title: 429-H8

description: Original Sample title: H8


title: 423-H2

description: Original Sample title: H2


title: 428-H7

description: Original Sample title: H7


title: 422-H11

description: Original Sample title: H11


title: 425-H4

description: Original Sample title: H4


title: 440-TEnd-2

description: Original Sample title: TEnd-2


title: 430-H9

description: Original Sample title: H9


title: 42-cla204

description: Original Sample title: cla204


title: 431-NB

description: Original Sample title: NB

source_name: brain normal tissue

value: brain normal tissue


title: 424-H3

description: Original Sample title: H3


title: 421-H10

description: Original Sample title: H10


title: 420-H1

description: Original Sample title: H1


title: 417-G6

description: Original Sample title: G6


title: 418-G7

description: Original Sample title: G7


title: 419-G9

description: Original Sample title: G9


title: 413-G11

description: Original Sample title: G11


title: 414-G2

description: Original Sample title: G2


title: 41-c53-1079

description: Original Sample title: c53-1079


title: 410-F9

description: Original Sample title: F9


title: 412-G10

description: Original Sample title: G10


title: 416-G4

description: Original Sample title: G4


title: 405-F3

description: Original Sample title: F3


title: 408-F6

description: Original Sample title: F6


title: 40-c52-1078

description: Original Sample title: c52-1078


title: 399-E7

description: Original Sample title: E7


title: 409-F8

description: Original Sample title: F8


title: 401-E9

description: Original Sample title: E9


title: 398-E6

description: Original Sample title: E6


title: 402-F10

description: Original Sample title: F10


title: 39-c28-1054

description: Original Sample title: c28-1054


title: 400-E8

description: Original Sample title: E8


title: 396-E4

description: Original Sample title: E4


title: 394-E2

description: Original Sample title: E2


title: 395-E3

description: Original Sample title: E3


title: 411-G1

description: Original Sample title: G1


title: 407-F5

description: Original Sample title: F5


title: 406-F4

description: Original Sample title: F4


title: 404-F2

description: Original Sample title: F2


title: 415-G3

description: Original Sample title: G3


title: 393-E11

description: Original Sample title: E11


title: 397-E5

description: Original Sample title: E5


title: 392-E1

description: Original Sample title: E1


title: 391-D9

description: Original Sample title: D9


title: 38-ctsn46

description: Original Sample title: ctsn46


title: 390-D8

description: Original Sample title: D8


title: 387-D5

description: Original Sample title: D5


title: 382-D10

description: Original Sample title: D10


title: 383-D11

description: Original Sample title: D11


title: 384-D2

description: Original Sample title: D2


title: 388-D6

description: Original Sample title: D6


title: 389-D7

description: Original Sample title: D7


title: 385-D3

description: Original Sample title: D3


title: 386-D4

description: Original Sample title: D4


title: 377-C6

description: Original Sample title: C6


title: 376-C5

description: Original Sample title: C5


title: 379-C8

description: Original Sample title: C8


title: 378-C7

description: Original Sample title: C7


title: 375-C4

description: Original Sample title: C4


title: 380-C9

description: Original Sample title: C9


title: 374-C3

description: Original Sample title: C3


title: 373-C2

description: Original Sample title: C2


title: 372-C12

description: Original Sample title: C12


title: 370-C10

description: Original Sample title: C10


title: 369-B9

description: Original Sample title: B9


title: 371-C11

description: Original Sample title: C11


title: 36-ctsn19

description: Original Sample title: ctsn19


title: 381-D1

description: Original Sample title: D1


title: 367-B7

description: Original Sample title: B7


title: 365-B5

description: Original Sample title: B5


title: 366-B6

description: Original Sample title: B6


title: 368-B8

description: Original Sample title: B8


title: 37-ctsn49

description: Original Sample title: ctsn49


title: 35-ctsn17

description: Original Sample title: ctsn17


title: 357-A7

description: Original Sample title: A7


title: 359-B1

description: Original Sample title: B1


title: 356-A6

description: Original Sample title: A6


title: 363-B3

description: Original Sample title: B3


title: 362-B12

description: Original Sample title: B12


title: 360-B10

description: Original Sample title: B10


title: 34-cla212

description: Original Sample title: cla212


title: 350-A11

description: Original Sample title: A11


title: 353-A3

description: Original Sample title: A3


title: 354-A4

description: Original Sample title: A4


title: 355-A5

description: Original Sample title: A5


title: 351-A12

description: Original Sample title: A12


title: 352-A2

description: Original Sample title: A2


title: 349-A10

description: Original Sample title: A10


title: 364-B4

description: Original Sample title: B4


title: 347-RKO

description: Original Sample title: RKO

source_name: colon cell line

value: colon cancer

value: colon cell line


title: 346-Co115

description: Original Sample title: Co115


title: 361-B11

description: Original Sample title: B11


title: 358-A9

description: Original Sample title: A9


title: 341-HeLa

description: Original Sample title: HeLa

source_name: cervical cell line

value: cervical cancer

value: cervical cell line


title: 344-HCT115

description: Original Sample title: HCT115


title: 345-LoVo

description: Original Sample title: LoVo


title: 340-CasKi

description: Original Sample title: CasKi


title: 33-cla291

description: Original Sample title: cla291


title: 333-JIJOYE

description: Original Sample title: JIJOYE


title: 339-SiHa

description: Original Sample title: SiHa


title: 338-HEPG2

description: Original Sample title: HEPG2

source_name: liver cell line

value: hepatocellular cancer

value: liver cell line


title: 342-C4I

description: Original Sample title: C4I


title: 332-FARAGE

description: Original Sample title: FARAGE


title: 331-AKATA

description: Original Sample title: AKATA


title: 330-NAMALWA

description: Original Sample title: NAMALWA


title: 348-A1

description: Original Sample title: A1

value: European


title: 337-SNU-368

description: Original Sample title: SNU-368


title: 335-ALEX

description: Original Sample title: ALEX


title: 328-RAMOS

description: Original Sample title: RAMOS


title: 325-M-2

description: Original Sample title: 1590.2

source_name: esophageal cell line

value: esophageal cancer

value: esophageal cell line


title: 321-M-39

description: Original Sample title: IGR39

source_name: melanocyte cell line

value: melanoma

value: melanocyte cell line


title: 322-M-A

description: Original Sample title: 011A

source_name: head-neck cell line

value: head-neck cancer

value: head-neck cell line


title: 324-M-1

description: Original Sample title: 1590.1


title: 326-M-248

description: Original Sample title: FR248

value: healthy


title: 327-M-NC1

description: Original Sample title: M-NC1

source_name: colon normal tissue

value: colon normal tissue


title: 320-M-37

description: Original Sample title: IGR37


title: 323-M-B

description: Original Sample title: 011B


title: 318-M-3480

description: Original Sample title: SW480


title: 317-ICF-10759

description: Original Sample title: ICF-10759

source_name: ICF cell line

value: ICF

value: ICF cell line


title: 31-ctsn48

description: Original Sample title: ctsn48

source_name: leukocytes

value: male

value: leukocytes


title: 334-KARPAS

description: Original Sample title: KARPAS

value: lymphoma

value: lymphoma cell line


title: 314-LCL2-icf

description: Original Sample title: LCL2-icf


title: 316-LCL4-icf

description: Original Sample title: LCL4-icf


title: 319-M-620

description: Original Sample title: SW620

value: colon cancer

value: colon cell line


title: 315-LCL3-icf

description: Original Sample title: LCL3-icf


title: 32-cla281

description: Original Sample title: cla281

value: female

value: European


title: 310-953

description: Original Sample title: 953

source_name: breast tumor tissue

value: breast cancer

value: breast tumor tissue


title: 311-965

description: Original Sample title: 965


title: 309-952

description: Original Sample title: 952


title: 30-cnn34

description: Original Sample title: cnn34


title: 305-839

description: Original Sample title: 839


title: 302-693

description: Original Sample title: 693


title: 301-501

description: Original Sample title: 501


title: 307-888

description: Original Sample title: 888


title: 304-715

description: Original Sample title: 715


title: 303-700

description: Original Sample title: 700


title: 306-862

description: Original Sample title: 862


title: 308-904

description: Original Sample title: 904


title: 300-470H1

description: Original Sample title: 470


title: 296-176

description: Original Sample title: 176


title: 298-291

description: Original Sample title: 291


title: 295-125

description: Original Sample title: 125


title: 29-ctsn43

description: Original Sample title: ctsn43


title: 294-124

description: Original Sample title: 124


title: 292-49B

description: Original Sample title: 49


title: 2-HCT116AZA

description: Original Sample title: HCT116AZA


title: 299-405

description: Original Sample title: 405


title: 291-29BB

description: Original Sample title: 29


title: 28-ctsn7

description: Original Sample title: ctsn7


title: 293-57

description: Original Sample title: 57


title: 286-10B

description: Original Sample title: 10


title: 290-28BB

description: Original Sample title: 28


title: 287-16BB

description: Original Sample title: 16


title: 285-959

description: Original Sample title: 959


title: 283-910

description: Original Sample title: 910


title: 282-891

description: Original Sample title: 891


title: 289-18

description: Original Sample title: 18


title: 281-835

description: Original Sample title: 835


title: 275-802

description: Original Sample title: 802


title: 280-832

description: Original Sample title: 832


title: 274-749

description: Original Sample title: 749


title: 27-cnn35

description: Original Sample title: cnn35


title: 278-815

description: Original Sample title: 815


title: 297-259

description: Original Sample title: 259


title: 277-804

description: Original Sample title: 804


title: 273-695

description: Original Sample title: 695


title: 272-470

description: Original Sample title: 470


title: 284-958

description: Original Sample title: 958


title: 271-451

description: Original Sample title: 451


title: 26-ctv39

description: Original Sample title: ctv39


title: 266-221

description: Original Sample title: 221


title: 268-304

description: Original Sample title: 304


title: 270-389

description: Original Sample title: 389


title: 279-824

description: Original Sample title: 824


title: 267-237

description: Original Sample title: 237


title: 265-154

description: Original Sample title: 154


title: 263-130

description: Original Sample title: 130


title: 262-109

description: Original Sample title: 109


title: 261-108

description: Original Sample title: 108


title: 258-918

description: Original Sample title: 918


title: 254-763

description: Original Sample title: 763


title: 259-1000

description: Original Sample title: 1000


title: 260-39

description: Original Sample title: 39


title: 257-842

description: Original Sample title: 842


title: 250-739

description: Original Sample title: 739


title: 251-742

description: Original Sample title: 742


title: 256-780

description: Original Sample title: 780


title: 255-779

description: Original Sample title: 779


title: 253-756

description: Original Sample title: 756


title: 252-755

description: Original Sample title: 755


title: 248-706

description: Original Sample title: 706


title: 249-707

description: Original Sample title: 707


title: 25-3918

description: Original Sample title: 3918


title: 247-682

description: Original Sample title: 682


title: 269-381

description: Original Sample title: 381


title: 246-606

description: Original Sample title: 606


title: 264-132

description: Original Sample title: 132


title: 245-600

description: Original Sample title: 600


title: 241-326

description: Original Sample title: 326


title: 24-3913

description: Original Sample title: 3913


title: 239-263

description: Original Sample title: 263


title: 243-463

description: Original Sample title: 463


title: 238-229

description: Original Sample title: 229


title: 234-131

description: Original Sample title: 131


title: 23-3905

description: Original Sample title: 3905


title: 235-146

description: Original Sample title: 146


title: 236-210

description: Original Sample title: 210


title: 231-402

description: Original Sample title: 402


title: 232-374

description: Original Sample title: 374


title: 233-370

description: Original Sample title: 370


title: 228-397

description: Original Sample title: 397


title: 226-354

description: Original Sample title: 354


title: 227-355

description: Original Sample title: 355


title: 229-400

description: Original Sample title: 400


title: 224-NBREAST

description: Original Sample title: NB

source_name: breast normal tissue

value: breast normal tissue


title: 225-338

description: Original Sample title: 338


title: 216-CL27

description: Original Sample title: CL27


title: 237-211

description: Original Sample title: 211


title: 221-SKBr3

description: Original Sample title: SKBr3

source_name: breast cell line

value: breast cell line


title: 222-BT-474

description: Original Sample title: BT-474


title: 1-HCT116

description: Original Sample title: HCT116


title: 240-287

description: Original Sample title: 287


title: 20-3838

description: Original Sample title: 3838


title: 21-3857

description: Original Sample title: 3857


title: 220-MDA-231

description: Original Sample title: MDA-231


title: 198-ML35

description: Original Sample title: ML35

source_name: blood lupus tissue

value: lupus

value: blood lupus tissue


title: 22-3866

description: Original Sample title: 3866

value: healthy


title: 199-ML43

description: Original Sample title: ML43


title: 223-HCC1937

description: Original Sample title: HCC1937


title: 197-ML33

description: Original Sample title: ML33


title: 19-3800

description: Original Sample title: 3800


title: 1874-B03-9553-11

description: Original Sample title: B03-9553-11

source_name: cervix normal tissue

value: cervix normal tissue


title: 1870-B06-05519-16

description: Original Sample title: B06-05519-16

source_name: cervix tumor tissue

value: cervical cancer

value: cervix tumor tissue


title: 1868-B04-13140-A3

description: Original Sample title: B04-13140-A3


title: 1867-B03-9553-11

description: Original Sample title: B03-9553-11


title: 1863-MIO-1

description: Original Sample title: MIO-1

source_name: differentiated adult stem cell line

value: differentiated adult stem cell line


title: 1864-MIO-2

description: Original Sample title: MIO-2


title: 1862-MIM-5

description: Original Sample title: MIM-5


title: 1866-B03-11318-A1

description: Original Sample title: B03-11318-A1


title: 1865-MIO-3

description: Original Sample title: MIO-3


title: 1861-MIM-4

description: Original Sample title: MIM-4


title: 1858-E3JD13

description: Original Sample title: GS0010390-DNAH06-E3JD13

source_name: pancreas cell line

value: pancreatic cancer

value: pancreas cell line


title: 1854-HS776T

description: Original Sample title: GS0010390-DNAH02-HS776T


title: 1853-MP2

description: Original Sample title: GS0010390-DNAH01-MP2


title: 1860-P1005

description: Original Sample title: GS0010390-DNAH08-P1005


title: 1855-P504

description: Original Sample title: GS0010390-DNAH03-P504


title: 1850-p203

description: Original Sample title: GS0010390-DNAG10-p203


title: 1852-E3LZ10

description: Original Sample title: GS0010390-DNAG12-E3LZ10


title: 1848-L36PL

description: Original Sample title: GS0010390-DNAG08-L36PL


title: 1840-JH15Na

description: Original Sample title: GS0010390-DNAF12-JH15Na

source_name: pancreas normal tissue

value: North American

value: pancreas normal tissue


title: 1842-JH27Na

description: Original Sample title: GS0010390-DNAG02-JH27Na


title: 1847-Xpa3

description: Original Sample title: GS0010390-DNAG07-Xpa3


title: 1846-Xpa4

description: Original Sample title: GS0010390-DNAG06-Xpa4


title: 1857-ASPC1

description: Original Sample title: GS0010390-DNAH05-ASPC1


title: 1844-JH33Na

description: Original Sample title: GS0010390-DNAG04-JH33Na


title: 1835-420Na

description: Original Sample title: GS0010390-DNAF07-420Na


title: 1849-p403

description: Original Sample title: GS0010390-DNAG09-p403


title: 183-AUT181-01

description: Original Sample title: AUT181-01

value: autism

value: leukocytes


title: 1837-421Na

description: Original Sample title: GS0010390-DNAF09-421Na


title: 1833-410Na

description: Original Sample title: GS0010390-DNAF05-410Na


title: 1831-247Na

description: Original Sample title: GS0010390-DNAF03-247Na


title: 182-AUT36-01

description: Original Sample title: AUT36-01

value: European


title: 1825-JH027a

description: Original Sample title: GS0010390-DNAE09-JH027a

source_name: pancreas tumor tissue

value: pancreas tumor tissue


title: 1829-JH034a

description: Original Sample title: GS0010390-DNAF01-JH034a


title: 1821-JH015a

description: Original Sample title: GS0010390-DNAE05-JH015a


title: 18-3771

description: Original Sample title: 3771

value: female


title: 1823-JH024a

description: Original Sample title: GS0010390-DNAE07-JH024a


title: 1815-A6La

description: Original Sample title: GS0010390-DNAD11-A6La


title: 1817-JH010a

description: Original Sample title: GS0010390-DNAE01-JH010a


title: 181-AUT19-01

description: Original Sample title: AUT19-01


title: 1811-420a

description: Original Sample title: GS0010390-DNAD07-420a


title: 1806-374a

description: Original Sample title: GS0010390-DNAD02-374a


title: 180-AUT6-01

description: Original Sample title: AUT6-01


title: 1809-410a

description: Original Sample title: GS0010390-DNAD05-410a


title: 1802-294a

description: Original Sample title: GS0010390-DNAC10-294a


title: 179-A22C

description: Original Sample title: 22C


title: 1804-354a

description: Original Sample title: GS0010390-DNAC12-354a


title: 1796-286a

description: Original Sample title: GS0010390-DNAC04-286a


title: 1798-287a

description: Original Sample title: GS0010390-DNAC06-287a


title: 1794-281a

description: Original Sample title: GS0010390-DNAC02-281a


title: 1792-266a

description: Original Sample title: GS0010390-DNAB12-266a


title: 1791-265b

description: Original Sample title: GS0010390-DNAB11-265b


title: 1827-JH033a

description: Original Sample title: GS0010390-DNAE11-JH033a


title: 178-G-226

description: Original Sample title: G-226


title: 1785-247a

description: Original Sample title: GS0010390-DNAB05-247a


title: 1787-253a

description: Original Sample title: GS0010390-DNAB07-253a


title: 1819-JH011a

description: Original Sample title: GS0010390-DNAE03-JH011a


title: 1784-219b

description: Original Sample title: GS0010390-DNAB04-219b


title: 1813-421a

description: Original Sample title: GS0010390-DNAD09-421a


title: 1779-198a

description: Original Sample title: GS0010390-DNAA11-198a


title: 177-A-63

description: Original Sample title: A-63

value: male

value: alzheimer


title: 1781-215a

description: Original Sample title: GS0010390-DNAB01-215a


title: 1800-291a

description: Original Sample title: GS0010390-DNAC08-291a


title: 1777-194a

description: Original Sample title: GS0010390-DNAA09-194a


title: 1775-185a

description: Original Sample title: GS0010390-DNAA07-185a


title: 1769-140a

description: Original Sample title: GS0010390-DNAA01-140a


title: 176-A-54

description: Original Sample title: A-54


title: 1771-159a

description: Original Sample title: GS0010390-DNAA03-159a


title: 1768-HSJDctr3

description: Original Sample title: HSJD ctr 3

source_name: normal tissue

value: normal tissue


title: 1766-HSJDctr1

description: Original Sample title: HSJD ctr 1

value: healthy


title: 1767-HSJDctr2

description: Original Sample title: HSJD ctr 2


title: 1765-HSJDNB17

description: Original Sample title: HSJD NB 17

source_name: ganglioneuroma

value: ganglioneuroma


title: 1764-HSJDNB16

description: Original Sample title: HSJD NB 16

source_name: neuroblastoma

value: neuroblastoma


title: 1763-HSJDNB15

description: Original Sample title: HSJD NB 15


title: 1762-HSJDNB14

description: Original Sample title: HSJD NB 14


title: 1760-HSJDNB12

description: Original Sample title: HSJD NB 12


title: 1761-HSJDNB13

description: Original Sample title: HSJD NB 13


title: 1759-HSJDNB11

description: Original Sample title: HSJD NB 11


title: 175-A-42

description: Original Sample title: A-42


title: WP_13 D60_2715300

type: RNA

city: Bethesda

first: Christopher

last: Pan

state: MD

address: Rm 5228, Bldg 50, South Dr.

department: NHGRI

country: USA

institute: NIH

description: Gene expression data from day 60 post infection

hyb_protocol: The hybridization cocktail containing the fragmented and labeled cRNAs was hybridized to The Affymetrix Human Gene 1.0 ST GeneChips. The chips were washed and stained by the Affymetrix Fluidics Station using the standard format and protocols as described by Affymetrix. The probe arrays were stained with streptavidin phycoerythrin solution (Molecular Probes, Carlsbad, CA) and enhanced by using an antibody solution containing 0.5 mg/mL of biotinylated anti-streptavidin (Vector Laboratories, Burlingame, CA).

scan_protocol: An Affymetrix Gene Chip Scanner 3000 was used to scan the probe arrays

data_processing: CEL files generated by the Affymetrix GCOS program (GCOS 1.2, Affymetrix) were imported into the Affymetrix Expression Consol program and an RMA (Robust Microarray Analysis) normalization was performed to generate the .Chp files.

label: biotin

molecule: total RNA

label_protocol: Per RNA labeling, 300 nanograms of total RNA was used in conjunction with the Affymetrix recommended protocol wt_sensetarget_label_manual (Catalog# 900672 and 901525).

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: Intestinal biopsies were taken after day one and day 60 post infection with Entamoeba histolytica

tag: tissue

value: Intestinal biopsy


title: WP_16 D60_2759071CT

source_name: Gene expression data from day 60 post infection


title: WP_12 D60_2711246


title: 1758-HSJDNB10

description: Original Sample title: HSJD NB 10


title: WP_14 D60_2716828CC


title: 1756-HSJDNB8

description: Original Sample title: HSJD NB 8


title: 1757-HSJDNB9

description: Original Sample title: HSJD NB 9


title: WP_11 D60_2607732TT


title: WP_10 D60_2556879CC


title: WP_7 D1_2741068CT

description: Gene expression data from day one post infection


title: 1755-HSJDNB7

description: Original Sample title: HSJD NB 7


title: WP_8 D1_2759071CT

source_name: Gene expression data from day one post infection


title: WP_9 D60_2486350TT


title: WP_6 D1_2716828CC


title: WP_15 D60_2741068CT


title: WP_4 D1_2711246


title: WP_2 D1_2556879CC


title: 1754-HSJDNB6

description: Original Sample title: HSJD NB 6


title: WP_1 D1_2486350TT


title: WP_3 D1_2607732TT


title: WP_5 D1_2715300


title: 1753-HSJDNB5

description: Original Sample title: HSJD NB 5


title: 174-A-31

description: Original Sample title: A-31


title: 1750-HSJDNB2

description: Original Sample title: HSJD NB 2


title: 1749-HSJDNB1

description: Original Sample title: HSJD NB 1


title: 244-476

description: Original Sample title: 476

value: breast cancer

value: breast tumor tissue


title: 1748-DLBc-06A138

description: Original Sample title: 06A138

source_name: brain dementia tissue

value: dementia

value: brain dementia tissue


title: 1747-DLBc-BK409

description: Original Sample title: BK409


title: 1745-DLBc-BK712

description: Original Sample title: BK712


title: 1743-DLBc-BK623

description: Original Sample title: BK623


title: 1752-HSJDNB4

description: Original Sample title: HSJD NB 4


title: 1751-HSJDNB3

description: Original Sample title: HSJD NB 3


title: 1744-DLBc-BK666

description: Original Sample title: BK666


title: 1742-DLBc-BK610

description: Original Sample title: BK610


title: 1741-DLBc-BK608

description: Original Sample title: BK608


title: 204-CL16

description: Original Sample title: CL16

source_name: leukocytes


title: 2WT_MIG

city: Ulm

first: Florian

last: Kuchenbauer

address: Albert-Einstein Allee 23

department: Department of Internal Medicine III

country: Germany

institute: University of Ulm

hyb_protocol: Standard using the GeneChip Hybridisation Oven 645

scan_protocol: Standard using the Affymetrix GCS 3000 Scanner

data_processing: Gene expression array data (CEL-files) was analysed using the software GeneSpring® GX 11.5.1 (Agilent Technologies).

organism: Mus musculus

source_name: bone marrow

label_protocol: Standard using the Fluidic Station FS450

growth_protocol: Total bone marrow (BM) from miR-223 knockout (mir-223-/-) and wildtype (miR-223+/+) mice 21 was extracted, prestimulated for 2 days. Then, the BM cells were simultaneously cotransduced with MSCV-Hoxa9-pgk-neomycin and a MSCV-Meis1-IRES-YFP by co-cultivation with irradiated (4,000 cGy) viral producers. HoxA9-Meis1 transduced cells were sorted for YFP expression and continuously selected with neomycin (1.4 mg/ml).

extract_protocol: Trizol Protocol

tag: strain

tag: genotype/variation

value: wild type


title: 3KO_starmut


title: 3KO_MIG


title: 1746-DLBc-06A208

description: Original Sample title: 06A208


title: 1740-DLBc-BK589

description: Original Sample title: BK589


title: 173-A-23

description: Original Sample title: A-23


title: 3WT_MIG


title: 2KO_MIG


title: 2KO_starmut


title: 3KO_223mut


title: 2KO_223mut


title: 1738-DLBc-A0347

description: Original Sample title: A0347


title: CG2 (modified) strain at specific growth rate 0.6h-1 0h

city: New Delhi

first: Krishna

middle: Jyoti

last: Mukherjee

state: delhi

address: New Mehrauli Road

department: School Of Biotechnology

country: India

institute: New Delhi

description: Study of the transcriptomic profiling at 0.6h-1 specific growth rates while expressing the recombinant GFP in DH5α in fed batch cultures with complex media.

hyb_protocol: Affymetrix protocol

scan_protocol: Affymetrix protocol

data_processing: Average Normalization using GeneChip Operating Software Version 1.4

label: Biotin

organism: Escherichia coli

source_name: Escherichia coli

label_protocol: Affymetrix protocol

growth_protocol: Fed batch high cell density cultivation

extract_protocol: Qiagen RNA extraction kit

treatment_protocol: Culture samples frozen in liquid methanol

tag: specific growth rate

tag: protocol

value: transformed with pBAD33-GFP

tag: time post-induction


title: CG2 (modified) strain at specific growth rate 0.6h-1 6h


title: 1737-MIM-1

description: Original Sample title: MIM-1

value: differentiated adult stem cell line


title: CG2 (modified) strain at specific growth rate 0.3h-1 4h

description: Study of the transcriptomic profiling at 0.3h-1specific growth rates while expressing the recombinant GFP in DH5α in fed batch cultures with complex media.


title: CG2 (modified) strain at specific growth rate 0.3h-1 6h


title: CG2 (modified) strain at specific growth rate 0.6h-1 4h


title: CG2 (modified) strain at specific growth rate 0.3h-1 2h


title: 17-3731

description: Original Sample title: 3731

value: European

value: leukocytes


title: Control Strain at specific growth rate 0.3h-1 4h


title: CG2 (modified) strain at specific growth rate 0.3h-1 0h


title: CG2 (modified) strain at specific growth rate 0.6h-1 2h


title: Control Strain at specific growth rate 0.3h-1 6h


title: 1736-DLBc-BK688

description: Original Sample title: BK688


title: 1735-DLBp-01A144

description: Original Sample title: 01A144


title: Control Strain at specific growth rate 0.3h-1 0h


title: 1739-DLBc-02A51

description: Original Sample title: 02A51


title: Control Strain at specific growth rate 0.3h-1 2h


title: 1733-Heart-109

description: Original Sample title: 109

source_name: aorta atheroma tissue

value: atheroma

value: aorta atheroma tissue


title: 1734-PD-07A027

description: Original Sample title: 07A027

source_name: brain parkinson tissue

value: male

value: parkinson

value: brain parkinson tissue


title: 1731-Heart-105

description: Original Sample title: 105


title: 1729-Heart-103

description: Original Sample title: 103

source_name: aorta normal tissue

value: healthy

value: aorta normal tissue


title: 172-AUT178-01

description: Original Sample title: AUT178-01

value: autism


title: 1727-Heart-99

description: Original Sample title: 99

value: atherosclerosis


title: 1730-Heart-104

description: Original Sample title: 104


title: 1728-Heart-102

description: Original Sample title: 102


title: specific growth rate 0.3h-1 6h

email: kjmukherjee@mail.jnu.ac.in, kumarsujeet@gmal.com, ashishji101@gmail.com, sudheer@imtech.res.in

institute: Jawaharlal Nehru University

description: Study of the transcriptomic profiling at different specific growth rates while expressing the xylanase under T7 promoter in BL21(DE3) in fed batch cultures with complex media.

tag: treatment

value: IPTG

tag: expression

value: xylanase under T7 promoter


title: 1725-Heart-97

description: Original Sample title: 97


title: 1724-Heart-96

description: Original Sample title: 96


title: 1723-Heart-95

description: Original Sample title: 95

value: female


title: 1722-Heart-94

description: Original Sample title: 94


title: 1721-Heart-92

description: Original Sample title: 92


title: 171-AUT35-01

description: Original Sample title: AUT35-01


title: 1719-Heart-83

description: Original Sample title: 83


title: 1720-Heart-84

description: Original Sample title: 84


title: specific growth rate 0.3h-1 4h


title: specific growth rate 0.3h-1 2h


title: 1718-Heart-80

description: Original Sample title: 80


title: 1732-Heart-106

description: Original Sample title: 106


title: 1711-ID346-AD

description: Original Sample title: ID346-AD

source_name: colon adenoma tissue

value: adenoma

value: colon adenoma tissue


title: 1715-Heart-69

description: Original Sample title: 69


title: 1712-ID375-ID

description: Original Sample title: ID375-ID


title: 1714-Heart-66

description: Original Sample title: 66


title: 1713-ID378-ID

description: Original Sample title: ID378-ID


title: 1716-Heart-73

description: Original Sample title: 73


title: 1710-ID181-AD

description: Original Sample title: ID181-AD


title: 1702-PCF2-AD3

description: Original Sample title: PCF2-AD3


title: 1707-ID13-AD

description: Original Sample title: ID13-AD


title: 169-AUT5-01

description: Original Sample title: AUT5-01


title: 1697-Lupus-37

description: Original Sample title: 37

source_name: blood lupus tissue

value: lupus

value: blood lupus tissue


title: 1708-ID30-AD

description: Original Sample title: ID30-AD

value: European


title: 1694-Lupus-32

description: Original Sample title: 32


title: 1703-PCF3-AD3

description: Original Sample title: PCF3-AD3


title: 170-AUT16-01

description: Original Sample title: AUT16-01

value: leukocytes


title: 1692-Lupus-30

description: Original Sample title: 30


title: 1709-ID39-AD

description: Original Sample title: ID39-AD


title: 1717-Heart-74

description: Original Sample title: 74

value: atheroma

value: aorta atheroma tissue


title: 1726-Heart-98

description: Original Sample title: 98

value: male


title: 1705-PCF4-AD2

description: Original Sample title: PCF4-AD2


title: 1686-Nlung-571

description: Original Sample title: 571

source_name: lung normal tissue

value: lung normal tissue


title: 1683-Tskin8

description: Original Sample title: Tskin8

source_name: skin tumor tissue

value: melanoma

value: skin tumor tissue


title: 1682-Tskin7

description: Original Sample title: Tskin7


title: 1704-PCF3-AD4

description: Original Sample title: PCF3-AD4


title: 1696-Lupus-36

description: Original Sample title: 36


title: 1688-Nlung-593

description: Original Sample title: 593

value: healthy


title: 168-A20C

description: Original Sample title: 20C


title: 1680-Tskin5

description: Original Sample title: Tskin5


title: 167-G-225

description: Original Sample title: G-225


title: 1679-Tskin4

description: Original Sample title: Tskin4


title: 1706-ID7-AD

description: Original Sample title: ID7-AD


title: 1681-Tskin6

description: Original Sample title: Tskin6


title: 1684-Tskin9

description: Original Sample title: Tskin9


title: E_coli_RL08_pBAD35BTE_pBAD33ACC-EZ_glycerol_midstat-techrep2_biorep2

city: Madison

first: Rebecca

last: Lennen

state: WI

address: 1415 Engineering Drive

department: Chemical and Biological Engineering

institute: University of Wisconsin-Madison

hyb_protocol: Cy3-labeled cDNA samples were hybridized to Roche NimbleGen (Madison, WI) Escherichia coli K-12 (accession number NC_000913) microarray slides containing 4 arrays per slide and 72000 probes per array, according to the NimbleGen Arrays User's Guide. See www.nimblegen.com.

scan_protocol: The arrays were scanned on a GenePix 4000B scanner (Molecular Devices, Sunnyvale, CA) with a photomultiplier tube gain to achieve 1 x 10-5 normalized counts at saturated intensity level. The images were processed and .pair files were generated based on non-normalized intensities. See www.nimblegen.com.

data_processing: Scanned probe intensities were imported into ArrayStar software (DNASTAR, Madison, WI), and processed with Robust Microarray Analysis (RMA) background correction, quantile normalization to adjust the probe intensity distributions to be the same across all cross-compared arrays, and RMA median polish summarization to generate gene level signal values from the normalized probe intensities (Bolstad et al. Bioinformatics 19(2):185). Mean intensities were determined across all array and sample technical replicates, and then across biological replicates to yield the final expression values. P-values were calculated across biological replicates by a Moderated t-Test (Smyth, Stat. Appl. Genet. Mol. Biol. 3:3) in ArrayStar software.

organism: Escherichia coli str. K-12 substr. MG1655

source_name: E. coli RL08/pBAD35-BTE/pBAD33-ACC, EZ glycerol, mid-stationary phase

label_protocol: 10 µg of RNA was used to synthesize cDNA, and 1 µg was labeled with Cy3 according to the NimbleGen Arrays User's Guide. See www.nimblegen.com.

growth_protocol: Escherichia coli K-12 MG1655 ΔfadD ΔaraBAD harboring different plasmids was grown at 37ºC in EZ rich defined medium (Teknova, Hollister, CA) supplemented with 0.2% glucose or 0.4% glycerol, and 0.01 mM biotin, and either 100 ug/mL ampicillin (pTrc99A-BTE(-H204A)) or 25 ug/mL kanamycin and 34 ug/mL chloramphenicol (pBAD35-BTE(-H204A) and pBAD33(-ACC)) and induced at OD600 0.2 with either 50 uM IPTG (pTrc99A-BTE(-H204A)) or 0.2% L-arabinose (pBAD35-BTE(-H204A) and pBAD33(-ACC)). Baffled shake flasks with 5X headspace were used for EZ glucose cultures (pTrc99A-BTE(-H204A)), with 250 rpm shaking. A baffled fermentor (12 L working volume, 4 L culture volume) with controlled pH (7.0 ± 0.2), agitation (700 rpm), and aeration (4 L/min air) was used for EZ glycerol cultures (pBAD35-BTE(-H204A) and pBAD33(-ACC)). Samples were taken at various times as defined.

extract_protocol: Total RNA was purified from frozen cell pellets using the RNAprotect Bacteria reagent kit (Qiagen, Valencia, CA) with lysozyme treatment and proteinase K digestion of cell lysates. Purification of total RNA was performed using the RNeasy Mini Kit (Qiagen).

treatment_protocol: 10 OD600-mL of culture was added to chilled 1/8th volume of 5% saturated phenol in ethanol, with deionized water added to maintain ratio of aqueous solution to phenol/ethanol, and centrifuged (5000 x g, 4ºC, 12 min). The supernatants were removed and the cell pellets were flash frozen in a dry ice/ethanol bath, and stored at -80ºC until further processing.

tag: genotype

value: K-12 MG1655 delta-fadD delta-araBAD

tag: plasmids

tag: phenotype

value: fatty acid overproducing


title: E_coli_RL08_pBAD35BTE_pBAD33ACC-EZ_glycerol_midstat-techrep1_biorep2


title: 1676-Tskin22

description: Original Sample title: Tskin22


title: 1678-Tskin3

description: Original Sample title: Tskin3


title: 1673-Tskin2

description: Original Sample title: Tskin2


title: E_coli_RL08_pBAD35BTE_pBAD33ACC-EZ_glycerol_midstat-techrep1_biorep1


title: 1674-Tskin20

description: Original Sample title: Tskin20


title: E_coli_RL08_pBAD35BTE_pBAD33-EZ_glycerol_midstat-techrep1_biorep1

source_name: E. coli RL08/pBAD35-BTE/pBAD33, EZ glycerol, mid-stationary phase


title: E_coli_RL08_pBAD35BTEH204A_pBAD33-EZ_glycerol_midstat-techrep2_biorep2

description: This sample is of non-fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing non-functional Umbellularia california acyl-acyl carrier protein thioesterase (BTE-H204A) on plasmid pBAD35 and empty plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in mid-stationary phase (12 hour post-inoculation). It is the second of two sample technical replicates and the second of two negative control biological replicates used in this experiment, each from separate cultures.

source_name: E. coli RL08/pBAD35-BTE-H204A/pBAD33, EZ glycerol, mid-stationary phase

value: normal


title: E_coli_RL08_pBAD35BTE_pBAD33-EZ_glycerol_midstat-techrep1_biorep2


title: E_coli_RL08_pBAD35BTEH204A_pBAD33-EZ_glycerol_midstat-techrep1_biorep2

description: This sample is of non-fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing non-functional Umbellularia california acyl-acyl carrier protein thioesterase (BTE-H204A) on plasmid pBAD35 and empty plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in mid-stationary phase (12 hour post-inoculation). It is the first of two sample technical replicates and the second of two negative control biological replicates used in this experiment, each from separate cultures.


title: 1666-Tskin13

description: Original Sample title: Tskin13


title: 166-A-48

description: Original Sample title: A-48

value: female

value: alzheimer


title: 1669-Tskin16

description: Original Sample title: Tskin16


title: 1672-Tskin19

description: Original Sample title: Tskin19


title: 1665-Tskin12

description: Original Sample title: Tskin12


title: 1668-Tskin15

description: Original Sample title: Tskin15


title: 1670-Tskin17

description: Original Sample title: Tskin17


title: 1671-Tskin18

description: Original Sample title: Tskin18


title: 1667-Tskin14

description: Original Sample title: Tskin14


title: 1677-Tskin23

description: Original Sample title: Tskin23


title: 1663-Tskin10

description: Original Sample title: Tskin10


title: E_coli_RL08_pBAD35BTEH204A_pBAD33-EZ_glycerol_midstat-techrep1_biorep1

description: This sample is of non-fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing non-functional Umbellularia california acyl-acyl carrier protein thioesterase (BTE-H204A) on plasmid pBAD35 and empty plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in mid-stationary phase (12 hour post-inoculation). It is the first of two sample technical replicates and the first of two negative control biological replicates used in this experiment, each from separate cultures.


title: 1662-Nskin9

description: Original Sample title: Nskin9

source_name: skin normal tissue

value: skin normal tissue


title: E_coli_RL08_pBAD35BTE_pBAD33ACC-EZ_glycerol_earlystat-techrep1_biorep1

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pBAD35 and E. coli acetyl-CoA carboxylase (ACC) on plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in early stationary phase (1 hour after the instantaneous growth rate dropped to 25% of the log phase growth rate). It is the first of two hybridization technical replicates, and the first of two fatty acid overproducing, acetyl-CoA carboxylase overexpressing biological replicates used in this experiment, each from separate cultures.

source_name: E. coli RL08/pBAD35-BTE/pBAD33-ACC, EZ glycerol, early stationary phase


title: E_coli_RL08_pBAD35BTE_pBAD33ACC-EZ_glycerol_earlystat-techrep2_biorep1

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pBAD35 and E. coli acetyl-CoA carboxylase (ACC) on plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in early stationary phase (1 hour after the instantaneous growth rate dropped to 25% of the log phase growth rate). It is the second of two hybridization technical replicates, and the first of two fatty acid overproducing, acetyl-CoA carboxylase overexpressing biological replicates used in this experiment, each from separate cultures.


title: E_coli_RL08_pBAD35BTE_pBAD33ACC-EZ_glycerol_earlystat-techrep1_biorep2

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pBAD35 and E. coli acetyl-CoA carboxylase (ACC) on plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in early stationary phase (1 hour after the instantaneous growth rate dropped to 25% of the log phase growth rate). It is the second of two fatty acid overproducing, acetyl-CoA carboxylase overexpressing biological replicates used in this experiment, each from separate cultures.


title: E_coli_RL08_pBAD35BTEH204A_pBAD33-EZ_glycerol_midstat-techrep2_biorep1

description: This sample is of non-fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing non-functional Umbellularia california acyl-acyl carrier protein thioesterase (BTE-H204A) on plasmid pBAD35 and empty plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in mid-stationary phase (12 hour post-inoculation). It is the second of two sample technical replicates and the first of two negative control biological replicates used in this experiment, each from separate cultures.


title: 1661-Nskin7

description: Original Sample title: Nskin7


title: E_coli_RL08_pBAD35BTE_pBAD33-EZ_glycerol_earlystat-techrep1_biorep2

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pBAD35 and empty plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in early stationary phase (1 hour after the instantaneous growth rate dropped to 25% of the log phase growth rate). It is the second of two fatty acid overproducing, non-acetyl-CoA carboxylase overexpressing biological replicates used in this experiment, each from separate cultures.

source_name: E. coli RL08/pBAD35-BTE/pBAD33, EZ glycerol, early stationary phase


title: 1660-Nskin3

description: Original Sample title: Nskin3


title: 165-A-51

description: Original Sample title: A-51


title: 1656-HCC1143

description: Original Sample title: HCC1143

source_name: breast cell line

value: breast cancer

value: breast cell line


title: 1657-normal_lung

description: Original Sample title: normal_lung

value: European


title: 1650-CB_A06-115-AD1

description: Original Sample title: CB_A06-115-AD1

source_name: brain alzheimer tissue

value: brain alzheimer tissue


title: 1655-ENT_A07-125-V-VI

description: Original Sample title: ENT_A07-125-V-VI


title: 1659-Nskin10

description: Original Sample title: Nskin10


title: E_coli_RL08_pBAD35BTEH204A_pBAD33-EZ_glycerol_earlystat-techrep1_biorep2

description: This sample is of non-fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing non-functional Umbellularia california acyl-acyl carrier protein thioesterase (BTE-H204A) on plasmid pBAD35 and empty plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in early stationary phase (1 hour after the instantaneous growth rate dropped to 25% of the log phase growth rate). It is the second of two negative control biological replicates used in this experiment, each from separate cultures.

source_name: E. coli RL08/pBAD35-BTE-H204A/pBAD33, EZ glycerol, early stationary phase


title: 1652-CxE_A07-124

description: Original Sample title: CxE_A07-124


title: E_coli_RL08_pBAD35BTE_pBAD33ACC-EZ_glycerol_latelog-techrep2_biorep1

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pBAD35 and E. coli acetyl-CoA carboxylase (ACC) on plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in late-log phase (OD600 2.0). It is the second of two hybridization technical replicates, and the first of two fatty acid overproducing, acetyl-CoA carboxylase overexpressing biological replicates used in this experiment, each from separate cultures.

source_name: E. coli RL08/pBAD35-BTE/pBAD33-ACC, EZ glycerol, late-log phase


title: E_coli_RL08_pBAD35BTE_pBAD33-EZ_glycerol_earlystat-techrep1_biorep1

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pBAD35 and empty plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in early stationary phase (1 hour after the instantaneous growth rate dropped to 25% of the log phase growth rate). It is the first of two fatty acid overproducing, non-acetyl-CoA carboxylase overexpressing biological replicates used in this experiment, each from separate cultures.


title: 1658-Nskin1

description: Original Sample title: Nskin1


title: 1664-Tskin11

description: Original Sample title: Tskin11


title: E_coli_RL08_pBAD35BTEH204A_pBAD33-EZ_glycerol_earlystat-techrep1_biorep1

description: This sample is of non-fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing non-functional Umbellularia california acyl-acyl carrier protein thioesterase (BTE-H204A) on plasmid pBAD35 and empty plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in early stationary phase (1 hour after the instantaneous growth rate dropped to 25% of the log phase growth rate). It is the first of two hybridization technical replicates, and the first of two negative control biological replicates used in this experiment, each from separate cultures.


title: 1651-CB_A07-31-AD5

description: Original Sample title: CB_A07-31-AD5


title: E_coli_RL08_pBAD35BTE_pBAD33ACC-EZ_glycerol_latelog-techrep1_biorep2

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pBAD35 and E. coli acetyl-CoA carboxylase (ACC) on plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in late-log phase (OD600 2.0). It is second of two fatty acid overproducing, acetyl-CoA carboxylase overexpressing biological replicates used in this experiment, each from separate cultures.


title: 164-A-40

description: Original Sample title: A-40

source_name: leukocytes

value: leukocytes


title: E_coli_RL08_pBAD35BTE_pBAD33ACC-EZ_glycerol_latelog-techrep1_biorep1

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pBAD35 and E. coli acetyl-CoA carboxylase (ACC) on plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in late-log phase (OD600 2.0). It is the first of two hybridization technical replicates, and the first of two fatty acid overproducing, acetyl-CoA carboxylase overexpressing biological replicates used in this experiment, each from separate cultures.


title: 1645-A08-34_cont_parietal

description: Original Sample title: A08-34_cont_parietal

source_name: brain normal tissue

value: brain normal tissue


title: 1647-A08-42_control_ent

description: Original Sample title: A08-42_control_ent


title: 1648-A08-54_cont_ent

description: Original Sample title: A08-54_cont_ent


title: 1654-CxP_A08-54

description: Original Sample title: CxP_A08-54


title: 1649-CB_A06-102-AD5

description: Original Sample title: CB_A06-102-AD5

value: male


title: 1646-A08-34_control_ent

description: Original Sample title: A08-34_control_ent


title: E_coli_RL08_pBAD35BTE_pBAD33-EZ_glycerol_latelog-techrep1_biorep2

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pBAD35 and empty plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in late-log phase (OD600 2.0). It is the second of two fatty acid overproducing, non-acetyl-CoA carboxylase overexpressing biological replicates used in this experiment, each from separate cultures.

source_name: E. coli RL08/pBAD35-BTE/pBAD33, EZ glycerol, late-log phase


title: 1643-A08-132_cont_parietal

description: Original Sample title: A08-132_cont_parietal


title: E_coli_RL08_pBAD35BTE_pBAD33-EZ_glycerol_latelog-techrep1_biorep1

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pBAD35 and empty plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in late-log phase (OD600 2.0). It is the first of two fatty acid overproducing, non-acetyl-CoA carboxylase overexpressing biological replicates used in this experiment, each from separate cultures.


title: 1653-CxE-A08-132

description: Original Sample title: CxE-A08-132


title: 1644-A08-153_ent

description: Original Sample title: A08-153_ent


title: E_coli_RL08_pBAD35BTEH204A_pBAD33-EZ_glycerol_latelog-techrep1_biorep2

description: This sample is of non-fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing non-functional Umbellularia california acyl-acyl carrier protein thioesterase (BTE-H204A) on plasmid pBAD35 and empty plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in late-log phase (OD600 2.0). It is the second of two negative control biological replicates used in this experiment, each from separate cultures.

source_name: E. coli RL08/pBAD35-BTE-H204A/pBAD33, EZ glycerol, late-log phase


title: 1641-A07-125_V-VI_parietal

description: Original Sample title: A07-125_V-VI_parietal


title: 1642-A08-127_ent

description: Original Sample title: A08-127_ent


title: E_coli_RL08_pBAD35BTEH204A_pBAD33-EZ_glycerol_earlystat-techrep2_biorep1

description: This sample is of non-fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing non-functional Umbellularia california acyl-acyl carrier protein thioesterase (BTE-H204A) on plasmid pBAD35 and empty plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in early stationary phase (1 hour after the instantaneous growth rate dropped to 25% of the log phase growth rate). It is the second of two hybridization technical replicates, and the first of two negative control biological replicates used in this experiment, each from separate cultures.


title: 163-A-30

description: Original Sample title: A-30


title: 1639-99-B1092

description: Original Sample title: 99-B1092

source_name: colon brain metastatic tissue

value: colon metastases

value: colon brain metastatic tissue


title: 1640-A07-124_V-VI_parietal

description: Original Sample title: A07-124_V-VI_parietal


title: E_coli_RL08_pBAD35BTEH204A_pBAD33-EZ_glycerol_latelog-techrep2_biorep1

description: This sample is of non-fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing non-functional Umbellularia california acyl-acyl carrier protein thioesterase (BTE-H204A) on plasmid pBAD35 and empty plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in late-log phase (OD600 2.0). It is the second of two hybridization technical replicates, and the first of two negative control biological replicates used in this experiment, each from separate cultures.


title: 1638-99-B1079

description: Original Sample title: 99-B1079

source_name: kidney brain metastatic tissue

value: kidney metastases

value: kidney brain metastatic tissue


title: 16-3712

description: Original Sample title: 3712

value: healthy


title: E_coli_RL08_pTrc99aBTE-EZ_glucose_midstat-rep2

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pTrc99A. It was grown in shake flasks in EZ rich defined medium + 0.2% glucose + 0.01 mM biotin and induced at OD600 0.2 with 50 uM IPTG and sampled in mid-stationary phase (4 hours after early stationary phase sampling point). It is the second of three fatty acid overproducing biological replicates used in this experiment, each from separate cultures.

source_name: E. coli RL08/pTrc99A-BTE, EZ glucose, mid-stationary phase

value: K-12 MG1655 delta-fadD delta-araBAD

value: fatty acid overproducing


title: E_coli_RL08_pBAD35BTEH204A_pBAD33-EZ_glycerol_latelog-techrep1_biorep1

description: This sample is of non-fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing non-functional Umbellularia california acyl-acyl carrier protein thioesterase (BTE-H204A) on plasmid pBAD35 and empty plasmid pBAD33. It was grown in fermentors with controlled pH, temperature, and aeration in EZ rich defined medium + 0.4% glycerol + 0.01 mM biotin and induced at OD600 0.2 with 0.2% L-arabinose and sampled in late-log phase (OD600 2.0). It is the first of two hybridization technical replicates, and the first of two negative control biological replicates used in this experiment, each from separate cultures.

value: normal


title: E_coli_RL08_pTrc99aBTE-EZ_glucose_midstat-rep3

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pTrc99A. It was grown in shake flasks in EZ rich defined medium + 0.2% glucose + 0.01 mM biotin and induced at OD600 0.2 with 50 uM IPTG and sampled in mid-stationary phase (4 hours after early stationary phase sampling point). It is the third of three fatty acid overproducing biological replicates used in this experiment, each from separate cultures.


title: 1637-98-U806

description: Original Sample title: 98-U806

source_name: kidney tumor tissue

value: female

value: kidney cancer

value: kidney tumor tissue


title: 1631-98-B75

description: Original Sample title: 98-B75


title: 1632-98-B813

description: Original Sample title: 98-B813


title: 1633-98-P11876

description: Original Sample title: 98-P11876

source_name: colon tumor tissue

value: colon cancer

value: colon tumor tissue


title: 1634-98-P2518

description: Original Sample title: 98-P2518

value: European


title: 1630-98-B415

description: Original Sample title: 98-B415


title: E_coli_RL08_pTrc99aBTEH204A-EZ_glucose_midstat-rep1

description: This sample is of non-fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing non-functional Umbellularia california acyl-acyl carrier protein thioesterase (BTE-H204A) on plasmid pTrc99A. It was grown in shake flasks in EZ rich defined medium + 0.2% glucose + 0.01 mM biotin and induced at OD600 0.2 with 50 uM IPTG and sampled in mid-stationary phase (4 hours after early stationary phase sampling point). It is the first of two negative control biological replicates used in this experiment, each from separate cultures.

source_name: E. coli RL08/pTrc99A-BTE-H204A, EZ glucose, mid-stationary phase


title: 1628-97-U4469

description: Original Sample title: 97-U4469


title: 162-A-22

description: Original Sample title: A-22

value: alzheimer

value: leukocytes


title: 1629-98-B405

description: Original Sample title: 98-B405

value: male


title: E_coli_RL08_pTrc99aBTE-EZ_glucose_earlystat-rep3

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pTrc99A. It was grown in shake flasks in EZ rich defined medium + 0.2% glucose + 0.01 mM biotin and induced at OD600 0.2 with 50 uM IPTG and sampled in early stationary phase (1 hour after the instantaneous growth rate dropped to 25% of the log-phase growth rate). It is the third of three fatty acid overproducing biological replicates used in this experiment, each from separate cultures.

source_name: E. coli RL08/pTrc99A-BTE, EZ glucose, early stationary phase


title: E_coli_RL08_pTrc99aBTE-EZ_glucose_midstat-rep1

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pTrc99A. It was grown in shake flasks in EZ rich defined medium + 0.2% glucose + 0.01 mM biotin and induced at OD600 0.2 with 50 uM IPTG and sampled in mid-stationary phase (4 hours after early stationary phase sampling point). It is the first of three fatty acid overproducing biological replicates used in this experiment, each from separate cultures.


title: 1627-97-P4454

description: Original Sample title: 97-P4454


title: 1636-98-U4749

description: Original Sample title: 98-U4749


title: E_coli_RL08_pTrc99aBTE-EZ_glucose_earlystat-rep1

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pTrc99A. It was grown in shake flasks in EZ rich defined medium + 0.2% glucose + 0.01 mM biotin and induced at OD600 0.2 with 50 uM IPTG and sampled in early stationary phase (1 hour after the instantaneous growth rate dropped to 25% of the log-phase growth rate). It is the first of three fatty acid overproducing biological replicates used in this experiment, each from separate cultures.


title: 1635-98-P8553

description: Original Sample title: 98-P8553


title: 1626-97-P18629

description: Original Sample title: 97-P18629


title: 1624-96-P12651

description: Original Sample title: 96-P12651


title: E_coli_RL08_pTrc99aBTEH204A-EZ_glucose_midstat-rep2

description: This sample is of non-fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing non-functional Umbellularia california acyl-acyl carrier protein thioesterase (BTE-H204A) on plasmid pTrc99A. It was grown in shake flasks in EZ rich defined medium + 0.2% glucose + 0.01 mM biotin and induced at OD600 0.2 with 50 uM IPTG and sampled in mid-stationary phase (4 hours after early stationary phase sampling point). It is the second of two negative control biological replicates used in this experiment, each from separate cultures.


title: 1623-95-U8689

description: Original Sample title: 95-U8689


title: E_coli_RL08_pTrc99aBTEH204A-EZ_glucose_earlystat-rep2

description: This sample is of non-fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing non-functional Umbellularia california acyl-acyl carrier protein thioesterase (BTE-H204A) on plasmid pTrc99A. It was grown in shake flasks in EZ rich defined medium + 0.2% glucose + 0.01 mM biotin and induced at OD600 0.2 with 50 uM IPTG and sampled in early stationary phase (1 hour after the instantaneous growth rate dropped to 25% of the log-phase growth rate). It is the second of three negative control biological replicates used in this experiment, each from separate cultures.

source_name: E. coli RL08/pTrc99A-BTE-H204A, EZ glucose, early stationary phase


title: 1622-95-U4647

description: Original Sample title: 95-U4647


title: E_coli_RL08_pTrc99aBTE-EZ_glucose_earlystat-rep2

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pTrc99A. It was grown in shake flasks in EZ rich defined medium + 0.2% glucose + 0.01 mM biotin and induced at OD600 0.2 with 50 uM IPTG and sampled in early stationary phase (1 hour after the instantaneous growth rate dropped to 25% of the log-phase growth rate). It is the second of three fatty acid overproducing biological replicates used in this experiment, each from separate cultures.


title: E_coli_RL08_pTrc99aBTE-EZ_glucose_midlog-rep2

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pTrc99A. It was grown in shake flasks in EZ rich defined medium + 0.2% glucose + 0.01 mM biotin and induced at OD600 0.2 with 50 uM IPTG and sampled in mid-log phase (OD600 0.8). It is the second of three fatty acid overproducing biological replicates used in this experiment, each from separate cultures.

source_name: E. coli RL08/pTrc99A-BTE, EZ glucose, mid-log phase


title: E_coli_RL08_pTrc99aBTEH204A-EZ_glucose_earlystat-rep1

description: This sample is of non-fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing non-functional Umbellularia california acyl-acyl carrier protein thioesterase (BTE-H204A) on plasmid pTrc99A. It was grown in shake flasks in EZ rich defined medium + 0.2% glucose + 0.01 mM biotin and induced at OD600 0.2 with 50 uM IPTG and sampled in early stationary phase (1 hour after the instantaneous growth rate dropped to 25% of the log-phase growth rate). It is the first of three negative control biological replicates used in this experiment, each from separate cultures.


title: 1621-95-P15392

description: Original Sample title: 95-P15392


title: E_coli_RL08_pTrc99aBTE-EZ_glucose_midlog-rep1

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pTrc99A. It was grown in shake flasks in EZ rich defined medium + 0.2% glucose + 0.01 mM biotin and induced at OD600 0.2 with 50 uM IPTG and sampled in mid-log phase (OD600 0.8). It is the first of three negative control biological replicates used in this experiment, each from separate cultures.


title: 1625-97-41117

description: Original Sample title: 97-41117


title: 161-AUT66-01

description: Original Sample title: AUT66-01

value: autism


title: 1620-95-15272

description: Original Sample title: 95-15272


title: 1619-6512T

description: Original Sample title: 6512T

source_name: lung tumor tissue

value: lung cancer

value: lung tumor tissue


title: E_coli_RL08_pTrc99aBTEH204A-EZ_glucose_earlystat-rep3

description: This sample is of non-fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing non-functional Umbellularia california acyl-acyl carrier protein thioesterase (BTE-H204A) on plasmid pTrc99A. It was grown in shake flasks in EZ rich defined medium + 0.2% glucose + 0.01 mM biotin and induced at OD600 0.2 with 50 uM IPTG and sampled in early stationary phase (1 hour after the instantaneous growth rate dropped to 25% of the log-phase growth rate). It is the third of three negative control biological replicates used in this experiment, each from separate cultures.


title: E_coli_RL08_pTrc99aBTEH204A-EZ_glucose_midlog-rep2

description: This sample is of non-fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing non-functional Umbellularia california acyl-acyl carrier protein thioesterase (BTE-H204A) on plasmid pTrc99A. It was grown in shake flasks in EZ rich defined medium + 0.2% glucose + 0.01 mM biotin and induced at OD600 0.2 with 50 uM IPTG and sampled in mid-log phase (OD600 0.8). It is the second of three negative control biological replicates used in this experiment, each from separate cultures.

source_name: E. coli RL08/pTrc99A-BTE-H204A, EZ glucose, mid-log phase


title: E_coli_RL08_pTrc99aBTE-EZ_glucose_midlog-rep3

description: This sample is of fatty acid overproducing Escherichia coli K-12 delta-fadD delta-araBAD expressing Umbellularia california acyl-acyl carrier protein thioesterase (BTE) on plasmid pTrc99A. It was grown in shake flasks in EZ rich defined medium + 0.2% glucose + 0.01 mM biotin and induced at OD600 0.2 with 50 uM IPTG and sampled in mid-log phase (OD600 0.8). It is the third of three fatty acid overproducing biological replicates used in this experiment, each from separate cultures.