title: CAP2/cap2D data Biological Replicate-2a

city: New Delhi

first: Krishnamurthy

last: Natarajan

state: Delhi

address: 314/325, School of life sciences, JNU

department: School of life sciences

country: India

institute: Jawaharlal Nehru University

description: Biological replicate 2 of 2. Wild type vs. cap2D grown in iron-depleted medium.

hyb_protocol: About 100 pmol each of Hyper5- and Cy3-coupled aRNA in RNase-free water was fragmented using RNA fragmentation reagent (Ambion) at 70°C for 15 min, made up volume to 62.5 µl with water, mixed with 2x formamide-based hybridization buffer (50% formamide, 10X SSC, 0.2% SDS), denatured at  95°C for 3 min.  The microarray slides were pre-hybridized (5xSSC, 0.1mg/ml BSA, 0.1% SDS) at 42°C for 60 min, washed once with water, and spin-dried.  The hybridization mix was applied to pre-hybridized slides and hybridation was carried out at 42°C for about 16 h in GeneTac hybridization station (Genomic Solutions).  The slides were washed sequentially for 12 min each in Wash buffer I (2x SSC, 0.2% SDS), Wash buffer II (2x SSC) and Wash buffer III (0.2x SSC) and spin-dried.

scan_protocol: Slides were immediately scanned  using ScanArray Express Microarray Scanner (Perkin Elmer). Laser power (90%) was kept constant and photomultiplier tube values were set for optimal intensity with minimal background. PMT settings were chosen to yield similar total fluorescence intensity in both channels. Gridding and analysis of images was performed with GenePix Pro 6.0 (Molecular Devices).

data_processing: The spots were flagged in GenePix Pro 6.0 as follows. A visual scan of each spot was performed and the features with artifacts like dust, streaks, and odd morphology such as comets were flagged as bad spots prior to analysis. Spots above 2 SD above the background and those spots with saturated intensities in both channels were also flagged bad spots.  Spots with signal-to-noise ratio ≥ 3 were flagged as good spots.  Background subtracted values that passed a minimum threshold were then flagged as good spots.  The data was normalized using GenePix Pro 6.0 such that the mean of the ratio of medians of all the features is equal to 1.0 and normalized log2 ratio of 635/532 intensity for each spot was obtained.

organism: Candida albicans

source_name: Total RNA from Candida albicans wild-type strain SN152

label_protocol: 1 µg of total RNA were primed with 0.5 µl of T7 Oligo(dT) DNA primer at 70°C for 10 min,  reversed transcribed at 42°C for 2 h in the presence of Array Script RTase (Ambion) as per manufacturer's instructions. Following this, Second Strand cDNA was synthesized and purified.  In Vitro Transcription reaction (Ambion) was carried out to synthesize Amino Allyl-Modified aRNA, purified, and coupled with either Hyper5 (GE Healthcare) or Cy3 (GE Healthcare) reactive dye as per Ambion instructions.  The dye-coupled aRNA was purified as per Ambion instructions, quantitated in Nanodrop ND-1000.

growth_protocol: C. albicans strains were grown overnight in SC-LIM (Synthetic complete-Low iron medium) and inoculated into fresh SC-LIM medium containing 100mM BPS with starting OD600 of 0.25 (wild-type CAP2) or 0.5 (cap2D null mutant strain). Cultures were grown at 30°C for 5h and Cells equivalent to OD600 ~10 were harvested rapidly by filtration and snap frozen in liquid nitrogen vapors.

extract_protocol: Total RNA was extracted using Hot-phenol method and further purified using the RNeasy mini kit (Qiagen)

treatment_protocol: Treated with BPS 100mM, 5h

tag: genotype

value: Wild-type

source_name: Total RNA from Candida albicans cap2D null mutant strain RPC75

growth_protocol: C. albicans strains were grown overnight in SC-LIM (Synthetic complete-Low iron medium) and inoculated into fresh SC-LIM medium containing 100mM BPS with starting OD600 of 0.5 (wild-type CAP2) or 0.5 (cap2D null mutant strain). Cultures were grown at 30°C for 5h and Cells equivalent to OD600 ~10 were harvested rapidly by filtration and snap frozen in liquid nitrogen vapors.

value: cap2D null mutant


title: 13969301 - Ws vs FCI.C

status: Public on May 25 2011

type: RNA

city: Evry

first: Eddy

last: Blondet

address: 2 rue Gaston crémieux

department: URGV

country: France

institute: INRA

description: The At3g49120 gene codes for the peroxidase 34 (PRX 34), an enzyme potentially involved in the polymérisation of monolignols, the lignin precursors. This enzyme is expressed in primary floral stem and its absence has an impact on the lignin quantity and biomass (at the young stage). Here, its question to characterize several mutants.

hyb_protocol: FCI.C Cy5 / Ws Cy3 : 30pmol. (Hybridization_Protocol.txt) Hybridization Protocol: CATMA slides (Corning Microarray Technology, CORNING) are pretreated in the prehybridisation solution (1 % BSA, 0.1 SDS, 5X SSC ) at 42°C for 60 min. They are dipped a couple of times in distilled water at room temperature, then in isopropanol and dried immediately by compressed nitrogen stream. Slides were placed in Corning hybridization chambers with a 25x60 lifterslip and 10ul of distilled water for each groove. The target was diluted to a final volume of 60 µL as follows 15µl of purified, labeled cDNA, 15 µl of 4X Hybridization Buffer ( 20X SDS, 0.4 % SDS), 30 µL formamide. The target mixture is heated for 3 min at 95°C, put on ice for 30 sec and centrifuged to remove dust for 1 min. The target mixture was put on the chip as quickly as possible. The microarray is sealed in a chamber and submerged in a 42°C water bath for approximately 16 h. The microarray is washed for 4 min in 1xSSC, 0.2% SDS (42°C); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC (RT); dipped a few times in distilled water and dried immediately by compressed nitrogen stream.

scan_protocol: GenePix Pro 3.0, Cy3:pmt voltage 532nm,480V,laser power 35%, Cy5:635nm,pmt voltage 480V,laser power 30%

data_processing: The raw data comprised the logarithm of median feature pixel intensity at wavelength 635 nm (red) and 532 nm (green). No background was subtracted. An array-by-array normalization was performed to remove systematic biases. First, we excluded spots that were considered badly formed features by the experimenter (Flags=-100). Then we performed a global intensity-dependent normalization using the loess procedure (see Yang et al., 2002) to correct the dye bias using R version 2.8.1 (2008-12-22) (ISBN 3-900051-07-0). Finally, on each block, the log-ratio median is subtracted from each value of the log-ratio of the block to correct a print-tip effect on each metablock.

molecule: total RNA

organism: Arabidopsis thaliana

label_protocol: labelling Cy3 and Cy5 direct, amplification=yes, aRNA 5 ug. (Labelling_protocol.txt) Labelling protocol: 5 µg of aRNA (8µl) mixed with 2 µl of random nonamers 1µg/µl and 0.5 µl of RNAse Out 40 U/µl, denatured 10 min at 70 °C and chilled on ice. The followig components were added to the sample 4 µl of first strand buffer 5 X, 1 µl of 10 mM dNTP/2mM dCTP, 2 µl of 0.1 M DTT, 1.5 µl of Cy3-dCTP or Cy5-dCTP (Amersham Pharmacia Biotech, 25nmol tube, PA5502), 1 µl of SuperScript II RT 200U/µl. Then it was incubated at 42°C for 2.5 hours and chilled on ice. The sample was denaturated by adding 2 µl of NaOH 2.5M and incubated at 37 °C for exactly 15 min, then was added 10 µl of 2M MOPS and put on ice. The dyes were purified with the QIAquick PCR Purification Kit (QIAGEN).

growth_protocol: stem - media : compost  hygrometry : 40% to 60%  temperature : 21°C Day / 18°C Night  light : Long days

extract_protocol: FCI.C:15ug. (Qiagen_RNeasy.pdf)

treatment_protocol: no treatment

tag: ecotype

value: wassilewskija

tag: genotype/variation

value: mutant (fci.c)

tag: age

source_name: Ws

extract_protocol: Ws:15ug. (Qiagen_RNeasy.pdf)

value: wild type


title: 13969333 - FCI.89 vs Ws

hyb_protocol: Ws Cy5 / FCI.89 Cy3 : 30pmol. (Hybridization_Protocol.txt) Hybridization Protocol: CATMA slides (Corning Microarray Technology, CORNING) are pretreated in the prehybridisation solution (1 % BSA, 0.1 SDS, 5X SSC ) at 42°C for 60 min. They are dipped a couple of times in distilled water at room temperature, then in isopropanol and dried immediately by compressed nitrogen stream. Slides were placed in Corning hybridization chambers with a 25x60 lifterslip and 10ul of distilled water for each groove. The target was diluted to a final volume of 60 µL as follows 15µl of purified, labeled cDNA, 15 µl of 4X Hybridization Buffer ( 20X SDS, 0.4 % SDS), 30 µL formamide. The target mixture is heated for 3 min at 95°C, put on ice for 30 sec and centrifuged to remove dust for 1 min. The target mixture was put on the chip as quickly as possible. The microarray is sealed in a chamber and submerged in a 42°C water bath for approximately 16 h. The microarray is washed for 4 min in 1xSSC, 0.2% SDS (42°C); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC (RT); dipped a few times in distilled water and dried immediately by compressed nitrogen stream.

extract_protocol: FCI.89:15ug. (Qiagen_RNeasy.pdf)

value: mutant (fci.89)


title: CD34+CD45RA+CD7+(CD10-)  donor-1

city: Paris

first: Marc

last: Delord

address: Hopital Saint-Louis, 1 avenue Claude Vellefaux

department: Recherche clinique

institute: Centre hospitalier de Versailles

description:
DP1
Gene expression data from prothymocytes

hyb_protocol: cRNAs were then hybridized to Affymetrix HG-U133A GeneChip arrays

scan_protocol: GeneChips were scanned using the Agilent GeneArray Scanner 2500A

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.

label: biotin

organism: Homo sapiens

source_name: CD34+CD45RA+CD7+(CD10-)  HPCs

label_protocol: RNA samples were subjected to double linear amplification using the GeneChip Eukaryotic Small Sample Target Labeling Assay Version II  (Affymetrix).

growth_protocol: CD34+ HPCs were isolated from Umbilical cord blood  midiMACS system (Miltenyi)

extract_protocol: RNA were extracted using the RNeasy Micro Kit

treatment_protocol: CD34+ PCs were labelled with CD34, CD45RA, CD7, CD10 and CD19  antibodies before the corresponding population were sorted by FACS

tag: tissue

value: umbilical cord blood

tag: cell type

value: hematopoietic progenitors


title: BW+Dex/2

city: Brussels

first: Amel

last: Tounsi

address: 74 avenue hippocrate

country: Belgium

institute: LICR

description: Gene expression data from  BW5147 cells simulated with 100ng/ml of Dex

hyb_protocol: Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse expression Array 430A. GeneChips were washed and stained in the Affymetrix genechip Fluidics Station 450.

scan_protocol: GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000A.

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.

organism: Mus musculus

source_name: BW5147 cells obtained from the American Type Culture Collection (Rockville, MD)

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.

growth_protocol: The thymic lymphoma cell line BW5147 was obtained from the American Type Culture Collection (Rockville, MD) and were cultured in Iscove-Dulbeco’s medium supplemented with 10% fetal calf serum, 0.24 mM asparagine, 1.5 mM glutamine, 0.55 mM arginine, and 50 μM 2-mercapthoethanol

extract_protocol: RNA was extracted using Tripure isolation reagent (Roche) according to the manufacturer’s instructions.

treatment_protocol: one million BW5147 cells were stimulated with 100 ng/ml of dexamethasone and/or with 100 U/ml of IL-9 or CCL1 for eight hours.

tag: mouse T cell lymphomas sensitive to glucocorticoids


title: BW+CCL-1/1

description: Gene expression data from  BW5147 cells simulated with 100 U/ml of CCL-1.


title: BW+Dex/1


title: BW+IL-9/1

description: Gene expression data from  BW5147 cells simulated with 100 U/ml of IL-9.


title: CAP2/cap2D data Technical Replicate-2b

description: Technical replicate 2 of 2.

tag: strain


title: BW+Dex+IL-9/1

description: Gene expression data from  BW5147 cells simulated with 100ng/ml of Dex and 100 U/ml of IL-9.


title: BW+Dex+IL-9/2


title: 13969292 - Fci.Gabi vs Col-0

hyb_protocol: Col-0 Cy5 / Fci.Gabi Cy3 : 30pmol. (Hybridization_Protocol.txt) Hybridization Protocol: CATMA slides (Corning Microarray Technology, CORNING) are pretreated in the prehybridisation solution (1 % BSA, 0.1 SDS, 5X SSC ) at 42°C for 60 min. They are dipped a couple of times in distilled water at room temperature, then in isopropanol and dried immediately by compressed nitrogen stream. Slides were placed in Corning hybridization chambers with a 25x60 lifterslip and 10ul of distilled water for each groove. The target was diluted to a final volume of 60 µL as follows 15µl of purified, labeled cDNA, 15 µl of 4X Hybridization Buffer ( 20X SDS, 0.4 % SDS), 30 µL formamide. The target mixture is heated for 3 min at 95°C, put on ice for 30 sec and centrifuged to remove dust for 1 min. The target mixture was put on the chip as quickly as possible. The microarray is sealed in a chamber and submerged in a 42°C water bath for approximately 16 h. The microarray is washed for 4 min in 1xSSC, 0.2% SDS (42°C); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC (RT); dipped a few times in distilled water and dried immediately by compressed nitrogen stream.

growth_protocol: stem - Media : compost  hygrometry : 40% to 60%  Temperature : 21°C Day / 18°C Night  Light : Long days

extract_protocol: Col-0:12ug. (Qiagen_RNeasy.pdf)

tag: developmental stage (boyes et al. plant cell 2001)

value: boyes 6.20

extract_protocol: Fci.Gabi:12ug. (Qiagen_RNeasy.pdf)

value: columbia

value: mutant (gabi728f08)


title: CD34+CD45RA+CD7+(CD10-) donor-3

description:
DP3
Gene expression data from prothymocytes


title: 13969302 - FCI.C vs Ws

hyb_protocol: Ws Cy5 / FCI.C Cy3 : 30pmol. (Hybridization_Protocol.txt) Hybridization Protocol: CATMA slides (Corning Microarray Technology, CORNING) are pretreated in the prehybridisation solution (1 % BSA, 0.1 SDS, 5X SSC ) at 42°C for 60 min. They are dipped a couple of times in distilled water at room temperature, then in isopropanol and dried immediately by compressed nitrogen stream. Slides were placed in Corning hybridization chambers with a 25x60 lifterslip and 10ul of distilled water for each groove. The target was diluted to a final volume of 60 µL as follows 15µl of purified, labeled cDNA, 15 µl of 4X Hybridization Buffer ( 20X SDS, 0.4 % SDS), 30 µL formamide. The target mixture is heated for 3 min at 95°C, put on ice for 30 sec and centrifuged to remove dust for 1 min. The target mixture was put on the chip as quickly as possible. The microarray is sealed in a chamber and submerged in a 42°C water bath for approximately 16 h. The microarray is washed for 4 min in 1xSSC, 0.2% SDS (42°C); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC (RT); dipped a few times in distilled water and dried immediately by compressed nitrogen stream.


title: 13969293 - Col-0 vs Fci.Salk11

hyb_protocol: Fci.Salk11 Cy5 / Col-0 Cy3 : 30pmol. (Hybridization_Protocol.txt) Hybridization Protocol: CATMA slides (Corning Microarray Technology, CORNING) are pretreated in the prehybridisation solution (1 % BSA, 0.1 SDS, 5X SSC ) at 42°C for 60 min. They are dipped a couple of times in distilled water at room temperature, then in isopropanol and dried immediately by compressed nitrogen stream. Slides were placed in Corning hybridization chambers with a 25x60 lifterslip and 10ul of distilled water for each groove. The target was diluted to a final volume of 60 µL as follows 15µl of purified, labeled cDNA, 15 µl of 4X Hybridization Buffer ( 20X SDS, 0.4 % SDS), 30 µL formamide. The target mixture is heated for 3 min at 95°C, put on ice for 30 sec and centrifuged to remove dust for 1 min. The target mixture was put on the chip as quickly as possible. The microarray is sealed in a chamber and submerged in a 42°C water bath for approximately 16 h. The microarray is washed for 4 min in 1xSSC, 0.2% SDS (42°C); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC (RT); dipped a few times in distilled water and dried immediately by compressed nitrogen stream.

extract_protocol: Fci.Salk11:12ug. (Qiagen_RNeasy.pdf)


title: BW/2

description: Gene expression data from unstimulated BW5147 cells


title: CAP2/cap2D data Biological Replicate-1a

description: Biological replicate 1 of 2. Wild type vs. cap2D grown in iron-depleted medium.


title: CAP2/cap2D data Technical Replicate-1b

description: Technical replicate 1 of 2.


title: BW/1


title: 13969291 - Col-0 vs Fci.Gabi

hyb_protocol: Fci.Gabi Cy5 / Col-0 Cy3 : 30pmol. (Hybridization_Protocol.txt) Hybridization Protocol: CATMA slides (Corning Microarray Technology, CORNING) are pretreated in the prehybridisation solution (1 % BSA, 0.1 SDS, 5X SSC ) at 42°C for 60 min. They are dipped a couple of times in distilled water at room temperature, then in isopropanol and dried immediately by compressed nitrogen stream. Slides were placed in Corning hybridization chambers with a 25x60 lifterslip and 10ul of distilled water for each groove. The target was diluted to a final volume of 60 µL as follows 15µl of purified, labeled cDNA, 15 µl of 4X Hybridization Buffer ( 20X SDS, 0.4 % SDS), 30 µL formamide. The target mixture is heated for 3 min at 95°C, put on ice for 30 sec and centrifuged to remove dust for 1 min. The target mixture was put on the chip as quickly as possible. The microarray is sealed in a chamber and submerged in a 42°C water bath for approximately 16 h. The microarray is washed for 4 min in 1xSSC, 0.2% SDS (42°C); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC (RT); dipped a few times in distilled water and dried immediately by compressed nitrogen stream.


title: ref6-1, biological rep1

city: Boston

first: Falong

last: Lu

state: Massachusetts

address: 200 Longwood Ave, WAB 159

department: Program of Cellular and Molecular Medicine

country: USA

institute: Boston Children's Hospital / HHMI

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on a GeneChip Arabidopsis ATH1 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.

data_processing: Gcos1.4 (GeneChip Operating Software) was used for single array analysis. Invariant set Normalization and Model-base Expression index in dchip2008 package were used for further expression analysis.

source_name: ref6-1, 10DAG seedling

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

growth_protocol: The seeds of the indicated genotype were surface steriled, planted on an MS plate, and grown at 23°C under long day (16h light, 8h dark) conditions for ten days before harvest.

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: No treatment applied.

tag: ecotype background

value: Col

value: ref6-1 mutant

tag: developmental stage

value: 10 days after germination

value: whole seedling


title: Col, biological rep2

source_name: Col, 10DAG seedling


title: ref6-1, biological rep2


title: 13969287 - FCI.89-1 vs Ws

hyb_protocol: Ws Cy5 / FCI.89-1 Cy3 : 30pmol. (Hybridization_Protocol.txt) Hybridization Protocol: CATMA slides (Corning Microarray Technology, CORNING) are pretreated in the prehybridisation solution (1 % BSA, 0.1 SDS, 5X SSC ) at 42°C for 60 min. They are dipped a couple of times in distilled water at room temperature, then in isopropanol and dried immediately by compressed nitrogen stream. Slides were placed in Corning hybridization chambers with a 25x60 lifterslip and 10ul of distilled water for each groove. The target was diluted to a final volume of 60 µL as follows 15µl of purified, labeled cDNA, 15 µl of 4X Hybridization Buffer ( 20X SDS, 0.4 % SDS), 30 µL formamide. The target mixture is heated for 3 min at 95°C, put on ice for 30 sec and centrifuged to remove dust for 1 min. The target mixture was put on the chip as quickly as possible. The microarray is sealed in a chamber and submerged in a 42°C water bath for approximately 16 h. The microarray is washed for 4 min in 1xSSC, 0.2% SDS (42°C); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC (RT); dipped a few times in distilled water and dried immediately by compressed nitrogen stream.

extract_protocol: Ws:12ug. (Qiagen_RNeasy.pdf)

extract_protocol: FCI.89-1:12ug. (Qiagen_RNeasy.pdf)

value: mutant (fci.89-1)


title: 13969288 - Ws vs FCI.C

extract_protocol: FCI.C:12ug. (Qiagen_RNeasy.pdf)


title: 13969290 - FCI.C vs Ws


title: 13969286 - Ws vs FCI.89-1

hyb_protocol: FCI.89-1 Cy5 / Ws Cy3 : 30pmol. (Hybridization_Protocol.txt) Hybridization Protocol: CATMA slides (Corning Microarray Technology, CORNING) are pretreated in the prehybridisation solution (1 % BSA, 0.1 SDS, 5X SSC ) at 42°C for 60 min. They are dipped a couple of times in distilled water at room temperature, then in isopropanol and dried immediately by compressed nitrogen stream. Slides were placed in Corning hybridization chambers with a 25x60 lifterslip and 10ul of distilled water for each groove. The target was diluted to a final volume of 60 µL as follows 15µl of purified, labeled cDNA, 15 µl of 4X Hybridization Buffer ( 20X SDS, 0.4 % SDS), 30 µL formamide. The target mixture is heated for 3 min at 95°C, put on ice for 30 sec and centrifuged to remove dust for 1 min. The target mixture was put on the chip as quickly as possible. The microarray is sealed in a chamber and submerged in a 42°C water bath for approximately 16 h. The microarray is washed for 4 min in 1xSSC, 0.2% SDS (42°C); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC (RT); dipped a few times in distilled water and dried immediately by compressed nitrogen stream.


title: Col, biological rep1


title: Hly-ycdC- -rep1

city: Newark

first: Kelvin

middle: H.

last: Lee

state: DE

address: 15 Innovation Way

department: Biotechnology Institute

institute: University of Delaware

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip E. coli Genome 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: Genechips were scanned using the GeneChip scanner 3000-7G

data_processing: Probe intensity data from scanned chip images were normalized using a RMA procedure and analyzed using GeneSpring software (Agilent)

organism: Escherichia coli K-12

source_name: E.coli cells at mid-exponential phase

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol (GeneChip Expression Analysis Technical Manual, Affymetrix).

growth_protocol: Both the strains were grown at 37 C until they reached the mid-exponential phase

extract_protocol: Total RNA was extracted from the cells using Qiagen RNeasy kit according to the manufacturer's instructions

value: Hly-ycdC-


title: Hly-ycdC+ -rep3

value: Hly-ycdC+


title: Hly-ycdC+ -rep1


title: Hly-ycdC+ -rep2


title: ZR75, technical replicate 2

city: BETHESDA

first: abdel

middle: G

last: Elkahloun

address: 50, SOUTH DRIVE

institute: NHGRI-NIH

hyb_protocol: The hybridization cocktail containing the fragmented and Biotin labeled cDNAs was hybridized to the Affymetrix Mouse 430 2.0 GeneChip. The chips were washed and stained by the Affymetrix Fluidics Station using the standard format and protocols as described by Affymetrix. The probe arrays were stained with streptavidin phycoerythrin solution (Molecular Probes, Carlsbad, CA) and enhanced by using an antibody solution containing 0.5 mg/mL of biotinylated anti-streptavidin (Vector Laboratories, Burlingame, CA).

scan_protocol: Genechips were scanned using an Affymetrix Gene Chip Scanner 3000.

data_processing: Gene expression intensities were calculated using GeneChip® Command Console® Software (AGCC) and Expression Console™ Software. RMA normalization was performed to generate the CHP files. Genesifter software and Pairwise comparisons were perfomed with Benjamini and Hochberg correction.

label: Biotin

source_name: ZR75 is a breast cancer cell line

label_protocol: Per RNA labeling, 5 micrograms  of total RNA was used in conjunction with the Affymetrix recommended protocol One-Cycle Target Labeling and Control Reagents (Catalog# 900493 ).

growth_protocol:
MDA-MB-435-F-L/GFP cells, which are highly invasive and metastatic variants of human carcinoma MDA-MB-435 cells, were isolated in our laboratory. The human breast cancer cell line ZR-75-1 was originally obtained from the American Type Culture Collection (Manassas, VA) and stably transfected with the enhanced green fluorescent protein (GFP) for the detection of metastases in vivo with green fluorescence imaging. We used a clone of GFP-transfected MDA-MB-231 cells named clone 10 from Dr. Julie Anne Sterling at Vanderbilt University, which was resistant to G418 antibiotic.

Cell lines were cultured in McCoy's 5A medium supplemented with pyruvate, vitamins, amino acids, antibiotics, and 10% fetal bovine serum. Working cultures were maintained at 37°C in a humidified incubator with 5% CO2.

extract_protocol: Trizol (Invitrogen) and RNeasy (Qiagen) kits were used to extract total RNA according to the manufacturer's instructions.

tag: cell line

value: breast cancer

value: ER positive ZR-75-1/GFP/puro


title: MDA231, technical replicate 2

source_name: MDA231 is a breast cancer cell line

value: ER negative MDA-MB-231/GFP/Neo cells resistant to G418


title: Hly-ycdC- -rep2


title: Hly-ycdC- -rep3


title: B6TC, technical replicate 2

source_name: B6TC cell is a fusion cell line formed by MDA231 and ZR75 breast cancer cell lines

value: GFP+ and estrogen-independent


title: MDA231, technical replicate 1


title: ZR75, technical replicate 1


title: B6TC, technical replicate 1


title: ZR75, technical replicate 3


title: MDA231, technical replicate 3


title: B6TC, technical replicate 3


title: W12 cervical ectokeratinocytes, Series 1 passage 22 (p22) #1

city: Cambridge

first: Matthew

middle: Jonathan

last: Murray

address: Box 197, Hills Road

department: MRC/Hutchison Research Centre

country: United Kingdom

institute: MRC Cancer Cell Unit

description:
W12 cervical ectokeratinocytes; a model that recapitulates features of neoplastic progression in vitro; originally described in Stanley et al 1989, PMID 2467886
W12 Series 1 passage 22 (p22) #1

hyb_protocol: As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683

data_processing: Pre-processing of microarray data (including background correction and normalization) was performed using the GeneChip Robust Multi-array Averaging (GC-RMA) method included in the Bioconductor package affy for the statistical software environment R. Data were analysed using the Linear Model for Microarray data, employing the Bioconductor package limma.

source_name: W12 passage 22 replicate 1 of 3

growth_protocol: Cell lines cultured under standard tissue culture conditions - incubated at 37C and in 5% CO2, with feeder cells - described in Stanley et al 1989, PMID 2467886

extract_protocol: TRIzol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: Nil; pre-treatment

tag: gender

value: Female

value: W12 cervical ectokeratinocytes

tag: anatomical site

value: Cervix

tag: passage


title: 13690385 - G1 B dcl2/3/4 10dpi vs G1 B dcl2/3/4 ni

city: evry

first: Soubigou-Taconnat

last: Ludivine

address: 2 rue gaston crémieux

description: 1. What are the genes (including miRNA precursors) that are differentially regulated in a set of viral siRNA in diferent mutants? 2. There are also differentially regulated between the plant generations 1 (G1) and 10 (G10)?

hyb_protocol: G1 B dcl2/3/4 ni Cy5 / G1 B dcl2/3/4 10dpi Cy3 : 30pmol. (Hybridization_Protocol.txt) Hybridization Protocol: CATMA slides (Corning Microarray Technology, CORNING) are pretreated in the prehybridisation solution (1 % BSA, 0.1 SDS, 5X SSC ) at 42°C for 60 min. They are dipped a couple of times in distilled water at room temperature, then in isopropanol and dried immediately by compressed nitrogen stream. Slides were placed in Corning hybridization chambers with a 25x60 lifterslip and 10ul of distilled water for each groove. The target was diluted to a final volume of 60 µL as follows 15µl of purified, labeled cDNA, 15 µl of 4X Hybridization Buffer ( 20X SDS, 0.4 % SDS), 30 µL formamide. The target mixture is heated for 3 min at 95°C, put on ice for 30 sec and centrifuged to remove dust for 1 min. The target mixture was put on the chip as quickly as possible. The microarray is sealed in a chamber and submerged in a 42°C water bath for approximately 16 h. The microarray is washed for 4 min in 1xSSC, 0.2% SDS (42°C); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC (RT); dipped a few times in distilled water and dried immediately by compressed nitrogen stream.

scan_protocol: GenePix Pro 6.0, Cy3:pmt voltage 532nm,500V,laser power 30%, Cy5:635nm,pmt voltage 500V,laser power 30%

data_processing: The raw data comprised the logarithm of median feature pixel intensity at wavelength 635 nm (red) and 532 nm (green). No background was subtracted. An array-by-array normalization was performed to remove systematic biases. First, we excluded spots that were considered badly formed features by the experimenter (Flags=-100). Then we performed a global intensity-dependent normalization using the loess procedure (see Yang et al., 2002) to correct the dye bias. Finally, on each block, the log-ratio median is subtracted from each value of the log-ratio of the block to correct a print-tip effect on each metablock.

source_name: G1 B dcl2/3/4 ni

growth_protocol: rosette - Col-0 and dcl2/3/4 were grown until rosette state and inoculated with TCV virus. Ten days post-inoculation the leaves were harvested. Temperature: 22°C Light: Long day

extract_protocol: G1 B dcl2/3/4 ni:40ug. (Extraction_ARN_au_Trizol.doc)

value: mutant (dcl 2/3/4)

tag: dev.stage (boyes et al. plant cell 2001)

source_name: G1 B dcl2/3/4 10dpi

extract_protocol: G1 B dcl2/3/4 10dpi:40ug. (Extraction_ARN_au_Trizol.doc)

treatment_protocol: Name:TCV virus infection - time course study - pathogen infection,tcv virus infection:time 10day . Col-0 and dcl2/3/4 were grown until rosette state and inoculated with TCV virus. Ten days post-inoculation the leaves were harvested. The leaves were frozen with liquid nitrogen and kept at -80 until the TRNA was extracted. The same was made for the two generations: G1 and G10. Two independent TRNA extractions were made for each of the two generation (A and B).


title: W12 cervical ectokeratinocytes, Series 1 passage 22 (p22) #3

description:
W12 cervical ectokeratinocytes; a model that recapitulates features of neoplastic progression in vitro; originally described in Stanley et al 1989, PMID 2467886
W12 Series 1 passage 22 (p22) #3

scan_protocol: As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683

source_name: W12 passage 22 replicate 3 of 3


title: 13690740 - G1 A Col0 ni vs G1 A Col0 10dpi

hyb_protocol: G1 A Col0 10dpi Cy5 / G1 A Col0 ni Cy3 : 30pmol. (Hybridization_Protocol.txt) Hybridization Protocol: CATMA slides (Corning Microarray Technology, CORNING) are pretreated in the prehybridisation solution (1 % BSA, 0.1 SDS, 5X SSC ) at 42°C for 60 min. They are dipped a couple of times in distilled water at room temperature, then in isopropanol and dried immediately by compressed nitrogen stream. Slides were placed in Corning hybridization chambers with a 25x60 lifterslip and 10ul of distilled water for each groove. The target was diluted to a final volume of 60 µL as follows 15µl of purified, labeled cDNA, 15 µl of 4X Hybridization Buffer ( 20X SDS, 0.4 % SDS), 30 µL formamide. The target mixture is heated for 3 min at 95°C, put on ice for 30 sec and centrifuged to remove dust for 1 min. The target mixture was put on the chip as quickly as possible. The microarray is sealed in a chamber and submerged in a 42°C water bath for approximately 16 h. The microarray is washed for 4 min in 1xSSC, 0.2% SDS (42°C); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC (RT); dipped a few times in distilled water and dried immediately by compressed nitrogen stream.

source_name: G1 A Col0 10dpi

extract_protocol: G1 A Col0 10dpi:40ug. (Extraction_ARN_au_Trizol.doc)

value: columbia

source_name: G1 A Col0 ni

extract_protocol: G1 A Col0 ni:40ug. (Extraction_ARN_au_Trizol.doc)


title: PPARG_BMP2_2of2

type: genomic

city: Baltimore

first: Molong

last: Li

state: MD

address: 733 N. Broadway

department: School of Medicine

institute: Johns Hopkins University

description: HPAEC ChIP-chip anti-ppar-gamma BMP2 treated 2of2

hyb_protocol: Standard NimbleGen hybridization kits and protocols were used and hybridization was performed using a NimbleGen 12 slide hybridization system.

scan_protocol: Arrays were scanned with Axon scanner at 5 um resolution according to standard NimbleGen protocols.

data_processing: Arrays were processed using Nimblegen's standard protocol for Nimblescan 2.5 ChIP data extraction. Log2 ChIP/input ratios were created from the two raw pair files.

molecule: genomic DNA

source_name: ppar-gamma ChIP DNA from BMP2 treated HPAEC

label_protocol: Input DNA was labeled with Cy3 and ChIP DNA was labeled with Cy5 using the Standard NimbleGen ChIP labeling protocol (1 ug of amplified ChIP DNA, direct incorporation of Cy-labeled primers with Klenow extension).

growth_protocol: HPAECs from large vessels (ScienCell) were grown in commercial EC media supplied by ScienCell (Cat: 1001) and used at passages 4-8.

extract_protocol: ChIP was performed on 10x10^6 HPAECs with anti-ppar-gamma (Santa Cruz; sc-7273X) and anti-beta-catenin (UPSTATE; Cat 06-734) antibodies using the Farnham ChIP protocol. The immunoprecipitated DNA was amplified using the Whole Genome Amplification Kit (Sigma).

treatment_protocol: Cells were treated with recombinant human BMP2 (Sigma-Aldrich) for 4 hours before harvesting.

value: human pulmonary artery endothelial cells

tag: chip antibody

value: ppar-gamma

source_name: Input DNA from BMP2 treated HPAEC

value: none, input DNA


title: 13690383 - G1 A dcl2/3/4 10dpi vs G1 A dcl2/3/4 ni

hyb_protocol: G1 A dcl2/3/4 ni Cy5 / G1 A dcl2/3/4 10dpi Cy3 : 30pmol. (Hybridization_Protocol.txt) Hybridization Protocol: CATMA slides (Corning Microarray Technology, CORNING) are pretreated in the prehybridisation solution (1 % BSA, 0.1 SDS, 5X SSC ) at 42°C for 60 min. They are dipped a couple of times in distilled water at room temperature, then in isopropanol and dried immediately by compressed nitrogen stream. Slides were placed in Corning hybridization chambers with a 25x60 lifterslip and 10ul of distilled water for each groove. The target was diluted to a final volume of 60 µL as follows 15µl of purified, labeled cDNA, 15 µl of 4X Hybridization Buffer ( 20X SDS, 0.4 % SDS), 30 µL formamide. The target mixture is heated for 3 min at 95°C, put on ice for 30 sec and centrifuged to remove dust for 1 min. The target mixture was put on the chip as quickly as possible. The microarray is sealed in a chamber and submerged in a 42°C water bath for approximately 16 h. The microarray is washed for 4 min in 1xSSC, 0.2% SDS (42°C); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC (RT); dipped a few times in distilled water and dried immediately by compressed nitrogen stream.

source_name: G1 A dcl2/3/4 ni

extract_protocol: G1 A dcl2/3/4 ni:40ug. (Extraction_ARN_au_Trizol.doc)

tag: genotype

source_name: G1 A dcl2/3/4 10dpi

extract_protocol: G1 A dcl2/3/4 10dpi:40ug. (Extraction_ARN_au_Trizol.doc)


title: 13690382 - G1 A dcl2/3/4 ni vs G1 A dcl2/3/4 10dpi

hyb_protocol: G1 A dcl2/3/4 10dpi Cy5 / G1 A dcl2/3/4 ni Cy3 : 30pmol. (Hybridization_Protocol.txt) Hybridization Protocol: CATMA slides (Corning Microarray Technology, CORNING) are pretreated in the prehybridisation solution (1 % BSA, 0.1 SDS, 5X SSC ) at 42°C for 60 min. They are dipped a couple of times in distilled water at room temperature, then in isopropanol and dried immediately by compressed nitrogen stream. Slides were placed in Corning hybridization chambers with a 25x60 lifterslip and 10ul of distilled water for each groove. The target was diluted to a final volume of 60 µL as follows 15µl of purified, labeled cDNA, 15 µl of 4X Hybridization Buffer ( 20X SDS, 0.4 % SDS), 30 µL formamide. The target mixture is heated for 3 min at 95°C, put on ice for 30 sec and centrifuged to remove dust for 1 min. The target mixture was put on the chip as quickly as possible. The microarray is sealed in a chamber and submerged in a 42°C water bath for approximately 16 h. The microarray is washed for 4 min in 1xSSC, 0.2% SDS (42°C); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC (RT); dipped a few times in distilled water and dried immediately by compressed nitrogen stream.

tag: ecotype


title: PPARG_CON_2of2

description: HPAEC ChIP-chip anti-ppar-gamma control treated 2of2

source_name: ppar-gamma ChIP DNA from control treated HPAEC

treatment_protocol: Cells were treated with vehicle control for 4 hours before harvesting.

source_name: Input DNA from control treated HPAEC


title: 13690742 - G1 A Col0 10dpi vs G1 A Col0 ni

hyb_protocol: G1 A Col0 ni Cy5 / G1 A Col0 10dpi Cy3 : 30pmol. (Hybridization_Protocol.txt) Hybridization Protocol: CATMA slides (Corning Microarray Technology, CORNING) are pretreated in the prehybridisation solution (1 % BSA, 0.1 SDS, 5X SSC ) at 42°C for 60 min. They are dipped a couple of times in distilled water at room temperature, then in isopropanol and dried immediately by compressed nitrogen stream. Slides were placed in Corning hybridization chambers with a 25x60 lifterslip and 10ul of distilled water for each groove. The target was diluted to a final volume of 60 µL as follows 15µl of purified, labeled cDNA, 15 µl of 4X Hybridization Buffer ( 20X SDS, 0.4 % SDS), 30 µL formamide. The target mixture is heated for 3 min at 95°C, put on ice for 30 sec and centrifuged to remove dust for 1 min. The target mixture was put on the chip as quickly as possible. The microarray is sealed in a chamber and submerged in a 42°C water bath for approximately 16 h. The microarray is washed for 4 min in 1xSSC, 0.2% SDS (42°C); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC (RT); dipped a few times in distilled water and dried immediately by compressed nitrogen stream.


title: W12 cervical ectokeratinocytes, Series 1 passage 19 (p19) #3

description:
W12 cervical ectokeratinocytes; a model that recapitulates features of neoplastic progression in vitro; originally described in Stanley et al 1989, PMID 2467886
W12 Series 1 passage 19 (p19) #3

source_name: W12 passage 19 replicate 3 of 3

label_protocol: As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683


title: 1602-01-U2870

status: Public on May 24 2011

city: Oviedo

first: Agustin

middle: F

last: Fernandez

email: affernandez@hca.es, agusff@gmail.com

state: Asturias

address: Avenida de Roma s/n

department: IUOPA

country: Spain

institute: Oviedo University-HUCA

description: Original Sample title: 01-U2870

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol

data_processing: average beta value = Max(Cy5,0)/[Max(Cy3,0) + Max(Cy5,0) + 100]

label: Cy3, Cy5

source_name: kidney tumor tissue

label_protocol: Standard Illumina labelling protocol

extract_protocol: Total DNA was isolated by standard procedures

value: male

tag: ethnicity

value: European

tag: disease state

value: kidney cancer

tag: biomaterial

value: kidney tumor tissue


title: 1604-02-B312

description: Original Sample title: 02-B312

source_name: colon brain metastatic tissue

tag: age

value: colon metastases

value: colon brain metastatic tissue


title: 1607-04-B178

description: Original Sample title: 04-B178


title: 13690741 - G1 B Col0 ni vs G1 B Col0 10dpi

hyb_protocol: G1 B Col0 10dpi Cy5 / G1 B Col0 ni Cy3 : 30pmol. (Hybridization_Protocol.txt) Hybridization Protocol: CATMA slides (Corning Microarray Technology, CORNING) are pretreated in the prehybridisation solution (1 % BSA, 0.1 SDS, 5X SSC ) at 42°C for 60 min. They are dipped a couple of times in distilled water at room temperature, then in isopropanol and dried immediately by compressed nitrogen stream. Slides were placed in Corning hybridization chambers with a 25x60 lifterslip and 10ul of distilled water for each groove. The target was diluted to a final volume of 60 µL as follows 15µl of purified, labeled cDNA, 15 µl of 4X Hybridization Buffer ( 20X SDS, 0.4 % SDS), 30 µL formamide. The target mixture is heated for 3 min at 95°C, put on ice for 30 sec and centrifuged to remove dust for 1 min. The target mixture was put on the chip as quickly as possible. The microarray is sealed in a chamber and submerged in a 42°C water bath for approximately 16 h. The microarray is washed for 4 min in 1xSSC, 0.2% SDS (42°C); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC (RT); dipped a few times in distilled water and dried immediately by compressed nitrogen stream.

source_name: G1 B Col0 10dpi

extract_protocol: G1 B Col0 10dpi:40ug. (Extraction_ARN_au_Trizol.doc)

source_name: G1 B Col0 ni

extract_protocol: G1 B Col0 ni:40ug. (Extraction_ARN_au_Trizol.doc)


title: 13690384 - G1 B dcl2/3/4 ni vs G1 B dcl2/3/4 10dpi

hyb_protocol: G1 B dcl2/3/4 10dpi Cy5 / G1 B dcl2/3/4 ni Cy3 : 30pmol. (Hybridization_Protocol.txt) Hybridization Protocol: CATMA slides (Corning Microarray Technology, CORNING) are pretreated in the prehybridisation solution (1 % BSA, 0.1 SDS, 5X SSC ) at 42°C for 60 min. They are dipped a couple of times in distilled water at room temperature, then in isopropanol and dried immediately by compressed nitrogen stream. Slides were placed in Corning hybridization chambers with a 25x60 lifterslip and 10ul of distilled water for each groove. The target was diluted to a final volume of 60 µL as follows 15µl of purified, labeled cDNA, 15 µl of 4X Hybridization Buffer ( 20X SDS, 0.4 % SDS), 30 µL formamide. The target mixture is heated for 3 min at 95°C, put on ice for 30 sec and centrifuged to remove dust for 1 min. The target mixture was put on the chip as quickly as possible. The microarray is sealed in a chamber and submerged in a 42°C water bath for approximately 16 h. The microarray is washed for 4 min in 1xSSC, 0.2% SDS (42°C); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC (RT); dipped a few times in distilled water and dried immediately by compressed nitrogen stream.


title: 1600-01-B755

description: Original Sample title: 01-B755


title: 1603-02-B126

description: Original Sample title: 02-B126


title: 1601-01-H8436

description: Original Sample title: 01-H8436

source_name: colon tumor tissue

value: colon cancer

value: colon tumor tissue


title: 13690381 - G1 B Col0 10dpi vs G1 B Col0 ni

hyb_protocol: G1 B Col0 ni Cy5 / G1 B Col0 10dpi Cy3 : 30pmol. (Hybridization_Protocol.txt) Hybridization Protocol: CATMA slides (Corning Microarray Technology, CORNING) are pretreated in the prehybridisation solution (1 % BSA, 0.1 SDS, 5X SSC ) at 42°C for 60 min. They are dipped a couple of times in distilled water at room temperature, then in isopropanol and dried immediately by compressed nitrogen stream. Slides were placed in Corning hybridization chambers with a 25x60 lifterslip and 10ul of distilled water for each groove. The target was diluted to a final volume of 60 µL as follows 15µl of purified, labeled cDNA, 15 µl of 4X Hybridization Buffer ( 20X SDS, 0.4 % SDS), 30 µL formamide. The target mixture is heated for 3 min at 95°C, put on ice for 30 sec and centrifuged to remove dust for 1 min. The target mixture was put on the chip as quickly as possible. The microarray is sealed in a chamber and submerged in a 42°C water bath for approximately 16 h. The microarray is washed for 4 min in 1xSSC, 0.2% SDS (42°C); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC, 0.2% SDS (RT); 4 min in 0.1x SSC (RT); dipped a few times in distilled water and dried immediately by compressed nitrogen stream.


title: 1606-03-P24045

description: Original Sample title: 03-P24045


title: W12 cervical ectokeratinocytes, Series 1 passage 19 (p19) #2

description:
W12 cervical ectokeratinocytes; a model that recapitulates features of neoplastic progression in vitro; originally described in Stanley et al 1989, PMID 2467886
W12 Series 1 passage 19  (p19) #2

source_name: W12 passage 19 replicate 2 of 3


title: PPARG_BMP2_1of2

description: HPAEC ChIP-chip anti-ppar-gamma BMP2 treated 1of2

tag: cell type


title: W12 cervical ectokeratinocytes, Series 1 passage 19 (p19) #1

description:
W12 cervical ectokeratinocytes; a model that recapitulates features of neoplastic progression in vitro; originally described in Stanley et al 1989, PMID 2467886
W12 Series 1 passage 19 (p19) #1

source_name: W12 passage 19 replicate 1 of 3


title: BCTNN_CON_2of2

description: HPAEC ChIP-chip anti-beta-catenin control treated 2of2

source_name: beta-catenin ChIP DNA from control treated HPAEC

value: beta-catenin


title: BCTNN_BMP2_2of2

description: HPAEC ChIP-chip anti-beta-catenin BMP2 treated 2of2

source_name: beta-catenin ChIP DNA from BMP2 treated HPAEC


title: PPARG_CON_1of2

description: HPAEC ChIP-chip anti-ppar-gamma control treated 1of2


title: 159-AUT15-01

description: Original Sample title: AUT15-01

source_name: leukocytes

value: autism

value: leukocytes


title: 1596-01-B36

description: Original Sample title: 01-B36

source_name: kidney brain metastatic tissue

value: female

value: kidney metastases

value: kidney brain metastatic tissue


title: 1598-01-B593

description: Original Sample title: 01-B593


title: 1597-01-B474

description: Original Sample title: 01-B474


title: BCTNN_CON_1of2

description: HPAEC ChIP-chip anti-beta-catenin control treated 1of2

value: human pulmonary artery endothelial cells


title: BCTNN_BMP2_1of2

description: HPAEC ChIP-chip anti-beta-catenin BMP2 treated 1of2

source_name: Input DNA from BMP2 treated HPAEC


title: 1593-00-P6270

description: Original Sample title: 00-P6270


title: 1594-01-B108

description: Original Sample title: 01-B108


title: 1599-01-B68

description: Original Sample title: 01-B68


title: 1592-00-B928

description: Original Sample title: 00-B928


title: 1590-Hm-MSC

description: Original Sample title: Hm-MSC

source_name: mesenchymal stem cell

value: healthy

value: mesenchymal stem cell


title: 1591-Hk-MSC

description: Original Sample title: Hk-MSC


title: 1586-S3-ASC

description: Original Sample title: S3-ASC

source_name: adipose stem cell

value: adipose stem cell


title: 1584-AZCOL-MAPC

description: Original Sample title: AZCOL-MAPC

source_name: multipotent adult progenitor cell

value: European

value: multipotent adult progenitor cell


title: 1585-S2-ASC

description: Original Sample title: S2-ASC


title: 158-AUT4-01

description: Original Sample title: AUT4-01


title: 1589-Hp-MSC

description: Original Sample title: Hp-MSC


title: 1587-S5-ASC

description: Original Sample title: S5-ASC


title: 1583-DI-MAPC

description: Original Sample title: DI-MAPC


title: 1588-S8-ASC

description: Original Sample title: S8-ASC


title: 1582-DK-MAPC

description: Original Sample title: DK-MAPC


title: 157-A19C

description: Original Sample title: 19C


title: 1581-DL-MAPC

description: Original Sample title: DL-MAPC


title: 1572-NA14667a

description: Original Sample title: NA14667a

source_name: lymphoblastoid cell line

value: male

value: lymphoblastoid cell line


title: 1571-NA06816b

description: Original Sample title: NA06816b


title: 1564-NA10924a

description: Original Sample title: NA10924a


title: 155-A-61

description: Original Sample title: A-61

value: alzheimer


title: 1559-NA06999a

description: Original Sample title: NA06999a


title: 156-G-224

description: Original Sample title: G-224


title: 1556-SUDHL5-a

description: Original Sample title: SUDHL5

source_name: lymphoma cell line

value: lymphoma

value: lymphoma cell line


title: 1555-Blue-1

description: Original Sample title: Blue-1_07_141


title: 1554-BL41

description: Original Sample title: BL41_07_140


title: 1558-NA07033a

description: Original Sample title: NA07033a


title: W12 cervical ectokeratinocytes, Series 1 passage 22 (p22) #2

description:
W12 cervical ectokeratinocytes; a model that recapitulates features of neoplastic progression in vitro; originally described in Stanley et al 1989, PMID 2467886
W12 Series 1 passage 22 (p22) #2

source_name: W12 passage 22 replicate 2 of 3

value: Female

value: W12 cervical ectokeratinocytes

value: Cervix


title: 1580-HJ-MSC

description: Original Sample title: HJ-MSC


title: 1551-MC116

description: Original Sample title: MC116_07_172


title: 1550-REC1

description: Original Sample title: REC1_07_535


title: 1562-NA10923a

description: Original Sample title: NA10923a


title: 1542-SUDHL-6-a

description: Original Sample title: SUDHL-6


title: 1549-Granta519

description: Original Sample title: Granta519_07_534


title: 1544-RCK-8-a

description: Original Sample title: RCK-8


title: 1546-Ly3-a

description: Original Sample title: Ly3


title: 153-A-39

description: Original Sample title: A-39

value: female

value: leukocytes


title: 1540-K1106-a

description: Original Sample title: K1106


title: 1530-TB-75

description: Original Sample title: 75

source_name: bladder tumor tissue

value: bladder cancer

value: bladder tumor tissue


title: 1548-MAVER1

description: Original Sample title: MAVER1_07_533


title: 1531-TB-77

description: Original Sample title: 77


title: 1532-TB-8

description: Original Sample title: 8


title: 15-3703

description: Original Sample title: 3703

value: healthy


title: 1533-TB-9

description: Original Sample title: 9


title: 152-A-29

description: Original Sample title: A-29


title: 1536-Daudi-a

description: Original Sample title: Daudi


title: 154-A-49

description: Original Sample title: A-49


title: 1552-HT

description: Original Sample title: HT_07_173


title: 1527-TB-67

description: Original Sample title: 67


title: 1529-TB-74

description: Original Sample title: 74


title: 1522-TB-53

description: Original Sample title: 53


title: 1524-TB-59

description: Original Sample title: 59


title: 1526-TB-62

description: Original Sample title: 62


title: 1520-TB-48

description: Original Sample title: 48


title: 1525-TB-5

description: Original Sample title: 5


title: 151-A-41

description: Original Sample title: A-41


title: 1521-TB-49

description: Original Sample title: 49


title: 1516-TB-27

description: Original Sample title: 27


title: 1517-TB-35

description: Original Sample title: 35


title: 1518-TB-3

description: Original Sample title: 3


title: 1519-TB-47

description: Original Sample title: 47


title: 1528-TB-72

description: Original Sample title: 72


title: 1523-TB-56

description: Original Sample title: 56


title: 1605-02-B743

description: Original Sample title: 02-B743

source_name: colon brain metastatic tissue

value: colon metastases

value: colon brain metastatic tissue


title: 1514-TB-18

description: Original Sample title: 18

value: European


title: 1515-TB-20

description: Original Sample title: 20


title: 1511-Testis-Normal6

description: Original Sample title: Testis-Normal6

source_name: testis normal tissue

value: testis normal tissue


title: 1506-Stom-29T

description: Original Sample title: 29T

source_name: stomach tumor tissue

value: Asian

value: stomach cancer

value: stomach tumor tissue


title: 1510-Testis-Normal3

description: Original Sample title: Testis-Normal3

value: male


title: 1505-Stom-28T

description: Original Sample title: 28T


title: 1508-Stom-30T

description: Original Sample title: 30T


title: 1509-Testis-Normal2

description: Original Sample title: Testis-Normal2


title: 1503-Stom-25T

description: Original Sample title: 25T


title: 1504-Stom-27T

description: Original Sample title: 27T


title: 1502-Stom-25N

description: Original Sample title: 25N

source_name: stomach normal tissue

value: stomach normal tissue


title: 1513-TB-11

description: Original Sample title: 11


title: 1512-Testis-Normal7

description: Original Sample title: Testis-Normal7


title: 1500-Stom-24N

description: Original Sample title: 24N


title: 1498-Stom-22T

description: Original Sample title: 22T


title: 1501-Stom-24T

description: Original Sample title: 24T


title: 1499-Stom-23T

description: Original Sample title: 23T


title: 1494-Stom-19T

description: Original Sample title: 19T


title: 1495-Stom-20T

description: Original Sample title: 20T


title: 1507-Stom-30N

description: Original Sample title: 30N


title: 150-AUT65-01

description: Original Sample title: AUT65-01

value: autism


title: 1492-Stom-16T

description: Original Sample title: 16T


title: 1491-SE-9

description: Original Sample title: B05/11254

source_name: testis tumor tissue

value: testis cancer

value: testis tumor tissue


title: 1489-SE-7

description: Original Sample title: B06/11470


title: 148-AUT14-01

description: Original Sample title: AUT14-01


title: 1496-Stom-21N

description: Original Sample title: 21N

value: female


title: 149-AUT32-01

description: Original Sample title: AUT32-01

value: leukocytes


title: 1488-SE-6

description: Original Sample title: B06/06473


title: 1497-Stom-21T

description: Original Sample title: 21T


title: 1493-Stom-17T

description: Original Sample title: 17T


title: 1487-SE-5

description: Original Sample title: B06/13544


title: 1595-01-B246

description: Original Sample title: 01-B246


title: 1484-SE-14

description: Original Sample title: B07/03549


title: 1485-SE-2

description: Original Sample title: B06/22192


title: 1490-SE-8

description: Original Sample title: B06/06820


title: 1482-SE-12

description: Original Sample title: B05/08463


title: 147-AUT3-01

description: Original Sample title: AUT3-01


title: 1481-SE-10

description: Original Sample title: B05/13816


title: 1478-NSE-8

description: Original Sample title: B06/02435


title: 1480-SE-1

description: Original Sample title: B06/17581


title: 1476-NSE-6

description: Original Sample title: B05/2001


title: 1477-NSE-7

description: Original Sample title: B07/04861


title: 1475-NSE-4

description: Original Sample title: B06/15008


title: 1479-NSE-9

description: Original Sample title: B07/17109


title: 1474-NSE-3

description: Original Sample title: B06/11468


title: 1473-NSE-2

description: Original Sample title: B06/12233


title: 1486-SE-4

description: Original Sample title: B06/15873


title: 1483-SE-13

description: Original Sample title: B05/16347


title: 1472-NSE-12

description: Original Sample title: B03/05493


title: 1470-NSE-10

description: Original Sample title: B07/05888


title: 1471-NSE-11

description: Original Sample title: B03/02639


title: 146-A16C

description: Original Sample title: 16C


title: 1469-NSE-1

description: Original Sample title: B06/14850


title: 1468-Liver-7N

description: Original Sample title: 7N

source_name: liver normal tissue

value: liver normal tissue


title: 1461-HCC-8T

description: Original Sample title: 8T

source_name: liver tumor tissue

value: hepatocellular cancer

value: liver tumor tissue


title: 1466-Liver-2N

description: Original Sample title: 2N

value: healthy


title: 1462-HCC-9T

description: Original Sample title: 9T


title: 1464-Liver-19N

description: Original Sample title: 19N


title: 1460-HCC-6T

description: Original Sample title: 6T


title: 1465-Liver-1N

description: Original Sample title: 1N


title: 1454-HCC-16T

description: Original Sample title: 16T


title: 1453-HCC-15T

description: Original Sample title: 15T


title: 1456-HCC-2T

description: Original Sample title: 2T


title: 1455-HCC-1T

description: Original Sample title: 1T


title: 1459-HCC-5T

description: Original Sample title: 5T


title: 1457-HCC-3T

description: Original Sample title: 3T


title: 1458-HCC-4T

description: Original Sample title: 4T


title: 1452-HCC-14T

description: Original Sample title: 14T


title: 1467-Liver-5N

description: Original Sample title: 5N


title: 145-G-216

description: Original Sample title: G-216

source_name: leukocytes


title: 1451-HCC-13T

description: Original Sample title: 13T


title: 1448-HCC-10T

description: Original Sample title: 10T


title: 1449-HCC-11T

description: Original Sample title: 11T


title: 1447-ESCC-9T

description: Original Sample title: 9T

source_name: esophagus tumor tissue

value: esophageal cancer

value: esophagus tumor tissue


title: 1446-ESCC-8T

description: Original Sample title: 8T


title: 1450-HCC-12T

description: Original Sample title: 12T


title: 144-A-59

description: Original Sample title: A-59

value: European

value: alzheimer


title: 1442-ESCC-3T

description: Original Sample title: 3T

value: Asian


title: 1443-ESCC-4T

description: Original Sample title: 4T


title: 1441-ESCC-2T

description: Original Sample title: 2T


title: 1444-ESCC-5T

description: Original Sample title: 5T


title: 1445-ESCC-6T

description: Original Sample title: 6T


title: 1437-ESCC-12T

description: Original Sample title: 12T


title: 1438-ESCC-13T

description: Original Sample title: 13T


title: 143-A-47

description: Original Sample title: A-47


title: 1436-ESCC-11T

description: Original Sample title: 11T


title: 14-3671

description: Original Sample title: 3671


title: 1440-ESCC-1T

description: Original Sample title: 1T


title: 1439-ESCC-14T

description: Original Sample title: 14T


title: 1435-ESCC-10T

description: Original Sample title: 10T


title: 1434-ES-9N

description: Original Sample title: 9N

source_name: esophagus normal tissue

value: esophagus normal tissue


title: 1433-ES-8N

description: Original Sample title: 8N

value: male


title: 1432-ES-5N

description: Original Sample title: 5N


title: 142-A-36

description: Original Sample title: A-36


title: 1428-TALL_F13705

description: Original Sample title: TALL_F13705

source_name: T-ALL neoplasia

value: ALL

value: T-ALL neoplasia


title: 1430-ES-1N

description: Original Sample title: 1N


title: 1431-ES-4N

description: Original Sample title: 4N


title: 1424-TALL_04_400_01

description: Original Sample title: TALL_04_400_01


title: 1425-TALL_05_1238_01

description: Original Sample title: TALL_05_1238_01


title: 1427-TALL_05_417_01

description: Original Sample title: TALL_05_417_01


title: 1423-TALL_04_394_01

description: Original Sample title: TALL_04_394_01


title: 1422-TALL_04_3652_01

description: Original Sample title: TALL_04_3652_01


title: 1421-MG984-TALL

description: Original Sample title: MG984-TALL


title: 1429-TALL_F8790

description: Original Sample title: TALL_F8790


title: 1418-LT39-TALL

description: Original Sample title: LT39-TALL


title: 1417-LT32-TALL

description: Original Sample title: LT32-TALL


title: 1419-LT3-TALL

description: Original Sample title: LT3-TALL


title: 1416-LT28-TALL

description: Original Sample title: LT28-TALL


title: 1415-LT19-TALL

description: Original Sample title: LT19-TALL


title: 141-A-28

description: Original Sample title: A-28


title: 1420-MG1486-TALL

description: Original Sample title: MG1486-TALL


title: 1426-TALL_05_4088_01

description: Original Sample title: TALL_05_4088_01


title: 1412-3620-TALL

description: Original Sample title: 3620-TALL


title: 1411-mm-pc-34151-a

description: Original Sample title: mm-pc-34151-a

source_name: MM neoplasia

value: MM

value: MM neoplasia


title: 1413-4869-TALL

description: Original Sample title: 4869-TALL


title: 1414-5107-TALL

description: Original Sample title: 5107-TALL


title: 140-DKO

description: Original Sample title: DKO

source_name: colon cell line

value: colon cancer

value: colon cell line


title: 1410-mm-pc-33732-a

description: Original Sample title: mm-pc-33732-a


title: 1409-mm-pc-33703-a

description: Original Sample title: mm-pc-33703-a

value: female


title: 1408-mm-pc-33421-a

description: Original Sample title: mm-pc-33421-a


title: 1407-mm-pc-33285-a

description: Original Sample title: mm-pc-33285-a


title: 1406-mm-pc-32456-a

description: Original Sample title: mm-pc-32456-a


title: 1403-mm-33682-a

description: Original Sample title: mm-33682-a


title: 1404-mm-pc-31549-a

description: Original Sample title: mm-pc-31549-a


title: 1405-mm-pc-32344-a

description: Original Sample title: mm-pc-32344-a


title: 1401-mm-31687-a

description: Original Sample title: mm-31687-a


title: 1400-mm-30117-a

description: Original Sample title: mm-30117-a


title: 1402-mm-31874-a

description: Original Sample title: mm-31874-a


title: 1399-mm-28875-a

description: Original Sample title: mm-28875-a


title: 139-AUT64-01

description: Original Sample title: AUT64-01

value: autism

value: leukocytes


title: 1398-MM_07_507

description: Original Sample title: MM_07_507


title: 1396-MDS-MPS-07_434

description: Original Sample title: MDS-MPS-07_434

source_name: MDS-MPS neoplasia

value: MDS

value: MDS-MPS neoplasia


title: 1397-MDS-MPS-07_444

description: Original Sample title: MDS-MPS-07_444


title: 1394-MDS-MPS_07_441

description: Original Sample title: MDS-MPS_07_441


title: 1391-MDS-MPS_07_433

description: Original Sample title: MDS-MPS_07_433


title: 1395-MDS-MPS_07_500

description: Original Sample title: MDS-MPS_07_500


title: 1390-MDS-MPS_07_431

description: Original Sample title: MDS-MPS_07_431


title: 1392-MDS-MPS_07_436

description: Original Sample title: MDS-MPS_07_436


title: 1393-MDS-MPS_07_439

description: Original Sample title: MDS-MPS_07_439


title: 1387-MDS-MPS_07_425

description: Original Sample title: MDS-MPS_07_425


title: 1381-MCL_L336_02

description: Original Sample title: MCL_L336_02

source_name: MCL neoplasia

value: MCL

value: MCL neoplasia


title: 1389-MDS-MPS_07_429

description: Original Sample title: MDS-MPS_07_429

value: European


title: 137-AUT13-01

description: Original Sample title: AUT13-01


title: 1385-MDS-5q_07_422

description: Original Sample title: MDS-5q_07_422


title: 138-AUT31-01

description: Original Sample title: AUT31-01


title: 1380-MCL_L245_02

description: Original Sample title: MCL_L245_02


title: 1386-MDS-5q_07_437

description: Original Sample title: MDS-5q_07_437


title: 1388-MDS-MPS_07_428

description: Original Sample title: MDS-MPS_07_428


title: 1379-MCL_L229_92

description: Original Sample title: MCL_L229_92


title: 1382-MCL_L446_02

description: Original Sample title: MCL_L446_02


title: 1378-MCL_L184_92

description: Original Sample title: MCL_L184_92


title: 1383-MCL_L513_05

description: Original Sample title: MCL_L513_05


title: 1377-MCL_L1736_04

description: Original Sample title: MCL_L1736_04


title: 1376-MCL_L1363_04

description: Original Sample title: MCL_L1363_04


title: 1372-FL_07_547

description: Original Sample title: FL_07_547

source_name: FL neoplasia

value: FL

value: FL neoplasia


title: 1371-FL_07_546

description: Original Sample title: FL_07_546


title: 1375-MCL_L1276_01

description: Original Sample title: MCL_L1276_01

value: male


title: 1373-FL_07_548

description: Original Sample title: FL_07_548


title: 1374-FL_07_550

description: Original Sample title: FL_07_550


title: 1370-FL_07_545

description: Original Sample title: FL_07_545


title: 1369-FL_07_544

description: Original Sample title: FL_07_544


title: 1384-MCL_L789_04

description: Original Sample title: MCL_L789_04


title: 1365-FL_07_540

description: Original Sample title: FL_07_540


title: 1366-FL_07_541

description: Original Sample title: FL_07_541


title: 1364-FL_07_539

description: Original Sample title: FL_07_539


title: 1368-FL_07_543

description: Original Sample title: FL_07_543


title: 1367-FL_07_542

description: Original Sample title: FL_07_542


title: 1362-FL_07_537

description: Original Sample title: FL_07_537


title: 1363-FL_07_538

description: Original Sample title: FL_07_538


title: 1343-CLL-12_07_358

description: Original Sample title: CLL-12_07_358

source_name: CLL neoplasia

value: CLL

value: CLL neoplasia


title: 1360-CLL-17p_07_369

description: Original Sample title: CLL-17p_07_369


title: 1353-CLL-14q_L1907_05

description: Original Sample title: CLL-14q_L1907_05


title: 1344-CLL-12_07_359

description: Original Sample title: CLL-12_07_359


title: 1346-CLL-13q_07_351

description: Original Sample title: CLL-13q_07_351


title: 1354-CLL-14q_L236_89

description: Original Sample title: CLL-14q_L236_89


title: 1349-CLL-13q_07_354

description: Original Sample title: CLL-13q_07_354


title: 1359-CLL-17p_07_368

description: Original Sample title: CLL-17p_07_368


title: 1351-CLL-14-19_L95_95

description: Original Sample title: CLL-14-19_L95_95


title: 1347-CLL-13q_07_352

description: Original Sample title: CLL-13q_07_352


title: 134-G-210

description: Original Sample title: G-210

value: healthy


title: 1356-CLL-14q_L874_03_04

description: Original Sample title: CLL-14q_L874_03_04


title: 1352-CLL-14q_L1401_04

description: Original Sample title: CLL-14q_L1401_04


title: 1350-CLL-13q_07_355

description: Original Sample title: CLL-13q_07_355


title: 135-12C

description: Original Sample title: 12C


title: 1348-CLL-13q_07_353

description: Original Sample title: CLL-13q_07_353


title: 1361-FL_07_536

description: Original Sample title: FL_07_536


title: 1355-CLL-14q_L261_04

description: Original Sample title: CLL-14q_L261_04


title: 1357-CLL-17p_07_366

description: Original Sample title: CLL-17p_07_366


title: 136-27C

description: Original Sample title: 27C


title: 1358-CLL-17p_07_367

description: Original Sample title: CLL-17p_07_367


title: 1345-CLL-12_07_360

description: Original Sample title: CLL-12_07_360


title: 1342-CLL-12_07_357

description: Original Sample title: CLL-12_07_357


title: 1341-CLL-12_07_356

description: Original Sample title: CLL-12_07_356


title: 1339-CLL-11q-13q_07_364

description: Original Sample title: CLL-11q-13q_07_364


title: 133-A-60

description: Original Sample title: A-60

value: alzheimer


title: 1337-CLL-11q-13q_07_362

description: Original Sample title: CLL-11q-13q_07_362


title: 1338-CLL-11q-13q_07_363

description: Original Sample title: CLL-11q-13q_07_363


title: 1336-CLL-11q-13q_07_361

description: Original Sample title: CLL-11q-13q_07_361


title: 1331-MG1487-ALL-TELAML1

description: Original Sample title: MG1487-ALL-TELAML1

source_name: ALL neoplasia

value: ALL

value: ALL neoplasia


title: 1332-MG1488-ALL-commonB

description: Original Sample title: MG1488-ALL-commonB

value: female


title: 1334-MG895-ALL-commonB

description: Original Sample title: MG895-ALL-commonB


title: 13-3605

description: Original Sample title: 3605


title: 132-A-46

description: Original Sample title: A-46


title: 1329-MG1482-ALL-BCRABL

description: Original Sample title: MG1482-ALL-BCRABL


title: 1322-ALL-4-11_07_518

description: Original Sample title: ALL-4-11_07_518


title: 1324-ALL-9-22_07_371

description: Original Sample title: ALL-9-22_07_371


title: 1340-CLL-11q-13q_07_365

description: Original Sample title: CLL-11q-13q_07_365


title: 1323-ALL-4-11_07_519

description: Original Sample title: ALL-4-11_07_519


title: 1330-MG1485-ALL-commonB

description: Original Sample title: MG1485-ALL-commonB


title: 1327-ALL-9-22_07_374

description: Original Sample title: ALL-9-22_07_374


title: 131-A-35

description: Original Sample title: A-35


title: 1325-ALL-9-22_07_372

description: Original Sample title: ALL-9-22_07_372


title: 1321-ALL-12-21_07_516

description: Original Sample title: ALL-12-21_07_516


title: 1316-4305-ALL-TELAML1

description: Original Sample title: 4305-ALL-TELAML1


title: 1319-4574-ALL-TELAML1

description: Original Sample title: 4574-ALL-TELAML1


title: 1318-4566-ALL-commonB

description: Original Sample title: 4566-ALL-commonB


title: 1317-4341-ALL-PreB

description: Original Sample title: 4341-ALL-PreB


title: 1315-3861-ALL-MLL

description: Original Sample title: 3861-ALL-MLL


title: 1314-30682-ALL-TELAML1

description: Original Sample title: 30682-ALL-TELAML1


title: 1333-MG1765-ALL-TELAML1

description: Original Sample title: MG1765-ALL-TELAML1


title: 130-A-27

description: Original Sample title: A-27


title: 1311-28835-ALL-BCRABL

description: Original Sample title: 28835-ALL-BCRABL


title: 1310-27184-ALL-MLL

description: Original Sample title: 27184-ALL-MLL


title: 1313-30348-ALL-BCRABL

description: Original Sample title: 30348-ALL-BCRABL


title: 1312-28918-ALL-TELAML1

description: Original Sample title: 28918-ALL-TELAML1


title: 1326-ALL-9-22_07_373

description: Original Sample title: ALL-9-22_07_373


title: 1309-26307-ALL-E2APBX1

description: Original Sample title: 26307-ALL-E2APBX1


title: 1320-ALL-12-21_07_515

description: Original Sample title: ALL-12-21_07_515


title: 1308-25169-ALL-BCRABL

description: Original Sample title: 25169-ALL-BCRABL


title: 1303-21981-ALL-BCRABL

description: Original Sample title: 21981-ALL-BCRABL


title: 1305-23555-ALL-TELAML1

description: Original Sample title: 23555-ALL-TELAML1


title: 1306-23827-ALL-BCRABL

description: Original Sample title: 23827-ALL-BCRABL


title: 1304-22251-ALL-BCRABL

description: Original Sample title: 22251-ALL-BCRABL


title: 1302-21486-ALL-MLL

description: Original Sample title: 21486-ALL-MLL


title: 1297-15637-ALL-BCRABL

description: Original Sample title: 15637-ALL-BCRABL


title: 1293-mBL_85a

description: Original Sample title: mBL_85a

source_name: mBL neoplasia

value: mBL

value: mBL neoplasia


title: 1294-11941-ALL-BCRABL

description: Original Sample title: 11941-ALL-BCRABL


title: 1300-21360-ALL-E2APBX1

description: Original Sample title: 21360-ALL-E2APBX1


title: 1299-21296-ALL-BCRABL

description: Original Sample title: 21296-ALL-BCRABL


title: 1301-21385-ALL-BCRABL

description: Original Sample title: 21385-ALL-BCRABL


title: 1298-17847-ALL-BCRABL

description: Original Sample title: 17847-ALL-BCRABL


title: 1295-14382-ALL-BCRABL

description: Original Sample title: 14382-ALL-BCRABL


title: 1296-14866-ALL-BCRABL

description: Original Sample title: 14866-ALL-BCRABL


title: 1290-mBL_81a

description: Original Sample title: mBL_81a


title: 1291-mBL_82a

description: Original Sample title: mBL_82a


title: 128-AUT62-01

description: Original Sample title: AUT62-01

value: autism

value: leukocytes


title: 1292-mBL_84a

description: Original Sample title: mBL_84a


title: 1289-mBL_80a

description: Original Sample title: mBL_80a


title: 1288-mBL_75a

description: Original Sample title: mBL_75a


title: 1287-mBL_71a

description: Original Sample title: mBL_71a


title: 1307-24375-ALL-BCRABL

description: Original Sample title: 24375-ALL-BCRABL


title: 1284-mBL_44a

description: Original Sample title: mBL_44a


title: 1286-mBL_55a

description: Original Sample title: mBL_55a


title: 1285-mBL_48a

description: Original Sample title: mBL_48a


title: 1283-mBL_43a

description: Original Sample title: mBL_43a


title: 1282-mBL_33a

description: Original Sample title: mBL_33a


title: 1280-mBL_17a

description: Original Sample title: mBL_17a


title: 1281-mBL_32a

description: Original Sample title: mBL_32a


title: 127-AUT29-01

description: Original Sample title: AUT29-01


title: 1278-mBL_171a

description: Original Sample title: mBL_171a


title: 1275-DLBCL_8a

description: Original Sample title: DLBCL_8a

source_name: DLBCL neoplasia

value: DLBCL

value: DLBCL neoplasia


title: 1277-mBL_144a

description: Original Sample title: mBL_144a

value: European


title: 1271-DLBCL_39a

description: Original Sample title: DLBCL_39a


title: 1270-DLBCL_30a

description: Original Sample title: DLBCL_30a


title: 1276-mBL_114a

description: Original Sample title: mBL_114a


title: 1273-DLBCL_45a

description: Original Sample title: DLBCL_45a


title: 1267-DLBCL_244a

description: Original Sample title: DLBCL_244a


title: 1264-DLBCL_22a

description: Original Sample title: DLBCL_22a


title: 1263-DLBCL_229a

description: Original Sample title: DLBCL_229a


title: 1272-DLBCL_40a

description: Original Sample title: DLBCL_40a


title: 126-AUT11-01

description: Original Sample title: AUT11-01


title: 1269-DLBCL_29a

description: Original Sample title: DLBCL_29a


title: 1265-DLBCL_235a

description: Original Sample title: DLBCL_235a


title: 1266-DLBCL_239a

description: Original Sample title: DLBCL_239a


title: 1262-DLBCL_227a

description: Original Sample title: DLBCL_227a


title: 1261-DLBCL_207a

description: Original Sample title: DLBCL_207a


title: 1260-DLBCL_203a

description: Original Sample title: DLBCL_203a


title: 1259-DLBCL_199a

description: Original Sample title: DLBCL_199a


title: 1257-DLBCL_192a

description: Original Sample title: DLBCL_192a


title: 1279-mBL_172a

description: Original Sample title: mBL_172a


title: 1254-DLBCL_183a

description: Original Sample title: DLBCL_183a


title: 1253-DLBCL_182a

description: Original Sample title: DLBCL_182a


title: 1258-DLBCL_194a

description: Original Sample title: DLBCL_194a


title: 1252-DLBCL_164a

description: Original Sample title: DLBCL_164a


title: 1255-DLBCL_185a

description: Original Sample title: DLBCL_185a


title: 1268-DLBCL_25a

description: Original Sample title: DLBCL_25a


title: 1274-DLBCL_53a

description: Original Sample title: DLBCL_53a


title: 1251-DLBCL_163a

description: Original Sample title: DLBCL_163a


title: 1250-DLBCL_15a

description: Original Sample title: DLBCL_15a


title: 1249-DLBCL_152a

description: Original Sample title: DLBCL_152a


title: 1246-DLBCL_146a

description: Original Sample title: DLBCL_146a


title: 1244-DLBCL_14_a

description: Original Sample title: DLBCL_14_a


title: 124-A11C

description: Original Sample title: 11C


title: 1245-DLBCL_142a

description: Original Sample title: DLBCL_142a


title: 1238-DLBCL_127a

description: Original Sample title: DLBCL_127a


title: 1240-DLBCL_130a

description: Original Sample title: DLBCL_130a


title: 123-G-209

description: Original Sample title: G-209


title: 1247-DLBCL_149a

description: Original Sample title: DLBCL_149a


title: 1242-DLBCL_133a

description: Original Sample title: DLBCL_133a


title: 1243-DLBCL_135a

description: Original Sample title: DLBCL_135a


title: 1241-DLBCL_132a

description: Original Sample title: DLBCL_132a


title: 1237-DLBCL_122a

description: Original Sample title: DLBCL_122a


title: 1236-DLBCL_119a

description: Original Sample title: DLBCL_119a


title: 1235-DLBCL_118a

description: Original Sample title: DLBCL_118a


title: 1256-DLBCL_190a

description: Original Sample title: DLBCL_190a


title: 1239-DLBCL_128a

description: Original Sample title: DLBCL_128a


title: 125-26C

description: Original Sample title: 26C


title: 1233-DLBCL_113a

description: Original Sample title: DLBCL_113a


title: 1232-DLBCL_110a

description: Original Sample title: DLBCL_110a


title: 1231-DLBCL_109a

description: Original Sample title: DLBCL_109a


title: 1230-DLBCL_108a

description: Original Sample title: DLBCL_108a


title: 1234-DLBCL_115a

description: Original Sample title: DLBCL_115a


title: 1229-DLBCL_106a

description: Original Sample title: DLBCL_106a


title: 122-A-57

description: Original Sample title: A-57


title: 1228-DLBCL_105a

description: Original Sample title: DLBCL_105a


title: 1248-DLBCL_150a

description: Original Sample title: DLBCL_150a


title: 1227-DLBCL_098a

description: Original Sample title: DLBCL_098a


title: 1175-Tovarian-501

description: Original Sample title: 501

source_name: ovarian tumor tissue

value: ovarian cancer

value: ovarian tumor tissue


title: 1174-Tovarian-500

description: Original Sample title: 500


title: 121-A-45

description: Original Sample title: A-45


title: 120-A-34

description: Original Sample title: A-34


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