title: DNB_CON-2

source_name: DNB exposure, control treatment, 24h, replicate 2


title: 26DNT_70%-4

status: Public on Jun 23 2011

type: RNA

city: Vicksburg

first: Natalia

last: Vinas

state: MS

address: 3909 Halls Ferry Rd

country: USA

institute: Mississippi State University

description: Gene expression after 24h exposure to 1.152 mg/L 26DNT

hyb_protocol: The Agilent one-color microarray hybridization protocol (One-Color Microarray-Based Gene Expression Analysis, version 5.7, Agilent Technologies, Palo Alto, CA) was used for microarray hybridizations following the manufacturer’s protocol and recommendations.

scan_protocol: An Agilent G2565CA Scanner (Agilent Technologies, Palo Alto, CA) was used to scan microarray images.

data_processing: Microarray image processing and data pre-processing were performed Agilent's Feature Extraction software v 9.5 following the manufacturer’s protocol and recommendations.

molecule: total RNA

organism: Daphnia magna

source_name: 26DNT exposure, 26DNT treatment, 24h, replicate 4

label_protocol: cDNA synthesis, cRNA labelling, amplification and hybridization were performed following the manufacturer's kits and protocols (Quick Amp Labeling kit; Agilent, Palo Alto, CA).

growth_protocol: Exposures were conducted in quadruplicated 1L glass beakers containing 750 ml of exposure water and 60 D. magna (6-8 days old) for 24 hours at 24 ± 1°C using a 16:8 photoperiod.  The LAAP exposure was conducted using five replicates containing 115 D. magna each to increase statistical power.  At the conclusion of each exposure, D. magna in each replicate and exposure were counted, weighed and flash-frozen then stored at -80oC until needed

extract_protocol: Total RNA was isolated using RNeasy kits (Qiagen, Valencia, CA, USA). RNA quality was assessed with an Agilent 2100 Bioanalyzer (Agilent, Wilmington, DE, USA) and quantity was determined using a Nanodrop® ND-1000 spectrophotometer (Nanodrop Technologies, Wilmington, DE, USA). Total RNA was stored at -80oC until analyzed.

treatment_protocol: Acetone was used as solvent carrier. Exposures were done with moderately hard-reconstituted water. An equivalent volume of clean acetone (≤ 1 mL/L) was spiked into control medium to ensure acetone did not confound results.

tag: tissue

value: whole organism

tag: mc


title: DNB_CON-1

description: Gene expression after 24h exposure to control water

source_name: DNB exposure, control treatment, 24h, replicate 1

tag: sample type

value: control


title: E18.5 GR ablation rep4

city: Houston

first: Scott

middle: Andrew

last: Ochsner

state: TX

address: One Baylor Plaza

department: Molecular and Cellular Biology

institute: Baylor College of Medicine

description: Mice lack GR specifically in mesenchymal cells generated using a mouse line that expresses the Cre from a BAC containing the locus of the collagen type (I)-alpha-2 gene (Col1-Cre)

hyb_protocol: Standard Affymetrix bihybridization protocol according to manufacturer's instruction.

scan_protocol: Standard Affymetrix scanning protocol according to manufacturer's instruction.

data_processing: Analysis of array data was performed using the R/Bioconductor and MeV 4.0. Data were normalized, and expression values were computed using the GCRMA method.

label: biotin

organism: Mus musculus

source_name: lung

label_protocol: Standard Affymetrix biotin labeling protocol using 1-2 micrograms of total RNA according to manufacturer's instruction.

growth_protocol: Staged matings were set up to harvest embryonic organs at desired stages of fetal development. In the case of a vaginal plug in the morning, noon of the same day was designated E0.5. At the embryonic day of interest, mothers were killed by CO2 and the pups were collected by Caesarean section. Complete uteri were removed and transferred to ice-cold PBS, and embryonic lungs were dissected out.

extract_protocol: Left lung lobes were immersed in RNALater solution (Sigma-Aldrich Chemie GmbH, Munich, Germany), snap frozen in liquid nitrogen, and stored at .80 C. Total RNA was prepared with the RNeasy Mini Kit (QIAGEN, Hilden, Germany) and its quality was assessed on RNA LabChips (Agilent Technologies, Santa Clara, CA).

tag: age

tag: genotype

value: lung

tag: genetic background


title: E16.5 GR ablation rep4


title: E18.5 control rep5

description: Mice express GR in mesenchymal cells.

value: GR flox (control)


title: E18.5 control rep4

description: Mice express GR in mesenchymal cells.


title: E18.5 control rep3

description: Mice express GR in mesenchymal cells.


title: E18.5 control rep2

description: Mice express GR in mesenchymal cells.


title: 26DNT_CON-4

source_name: 26DNT exposure, control treatment, 24h, replicate 4


title: Normal Control Tonsil5 [AffyNsp250]

type: genomic

city: Chapel Hill

first: Dirk

last: Dittmer

state: NC

address: 116 Manning Drive, CB# 7290

department: Microbiology & Immunology

institute: University of North Carolina at Chapel Hill

hyb_protocol: Standard Affymetrix protocol

scan_protocol: Standard Affymetrix protocol

data_processing:
Raw .CEL and .CHP files were imported into Genomics Suite software available from Partek Incorp. and analyzed using the Copy Number workflows
Data provided in the GSE28684_500K_Genotype.txt and GSE28684_CopyNumber.txt include genotype calls across the SNP markers and copy number markers included in the 500K array, respectively.

molecule: genomic DNA

organism: Homo sapiens

source_name: tonsil tissue from healthy donor

label_protocol: Standard Affymetrix protocol

extract_protocol: Genomic DNA was extracted from cell pellets using Promega Wizard DNA isolation kit

tag: cell type

value: B-cell

value: tonsil tissue from healthy donor


title: E18.5 control rep1

description: Mice express GR in mesenchymal cells.


title: 26DNT_70%-1

source_name: 26DNT exposure, 26DNT treatment, 24h, replicate 1


title: E16.5 control rep5

description: Mice express GR in mesenchymal cells.


title: 26DNT_70%-3

source_name: 26DNT exposure, 26DNT treatment, 24h, replicate 3


title: 26DNT_CON-3

source_name: 26DNT exposure, control treatment, 24h, replicate 3


title: E16.5 GR ablation rep1


title: 26DNT_CON-1

source_name: 26DNT exposure, control treatment, 24h, replicate 1


title: 26DNT_CON-2

source_name: 26DNT exposure, control treatment, 24h, replicate 2


title: E16.5 control rep4

description: Mice express GR in mesenchymal cells.


title: 26DNT_70%-2

source_name: 26DNT exposure, 26DNT treatment, 24h, replicate 2


title: 24DNT_70%-3

description: Gene expression after 24h exposure to 1.586 mg/L 24DNT

source_name: 24DNT exposure, 24DNT treatment, 24h, replicate 3


title: 24DNT_70%-4

source_name: 24DNT exposure, 24DNT treatment, 24h, replicate 4


title: E16.5 control rep2

description: Mice express GR in mesenchymal cells.


title: E16.5 control rep3

description: Mice express GR in mesenchymal cells.


title: E16.5 control rep1

description: Mice express GR in mesenchymal cells.


title: 24DNT_70%-1

source_name: 24DNT exposure, 24DNT treatment, 24h, replicate 1


title: 24DNT_CON-4

source_name: 24DNT exposure, control treatment, 24h, replicate 4


title: 24DNT_70%-2

source_name: 24DNT exposure, 24DNT treatment, 24h, replicate 2


title: MIX_5-8_8-4

description: Gene expression after 24h exposure to water from mixture 8 (1.269 mg/L TNT, 0.044 mg/L 24DNT, 0.157 mg/L DNB, 0.159 mg/L TNB, 0.093 mg/L RDX)

source_name: MIX 5-8 exposure, mixture-8 treatment, 24h, replicate 4


title: 24DNT_CON-1

source_name: 24DNT exposure, control treatment, 24h, replicate 1


title: 24DNT_CON-2

source_name: 24DNT exposure, control treatment, 24h, replicate 2


title: 24DNT_CON-3

source_name: 24DNT exposure, control treatment, 24h, replicate 3


title: MIX_5-8_8-1

source_name: MIX 5-8 exposure, mixture-8 treatment, 24h, replicate 1


title: MIX_5-8_8-3

source_name: MIX 5-8 exposure, mixture-8 treatment, 24h, replicate 3


title: MIX_5-8_7-3

description: Gene expression after 24h exposure to water from mixture 7 (1.465 mg/L TNT, 0.242 mg/L 24DNT, 0.204 mg/L DNB, 0.144 mg/L TNB, 5.229 mg/L RDX)

source_name: MIX 5-8 exposure, mixture-7 treatment, 24h, replicate 3


title: MIX_5-8_7-5

source_name: MIX 5-8 exposure, mixture-7 treatment, 24h, replicate 5


title: MIX_5-8_7-4

source_name: MIX 5-8 exposure, mixture-7 treatment, 24h, replicate 4


title: MIX_5-8_8-2

source_name: MIX 5-8 exposure, mixture-8 treatment, 24h, replicate 2


title: MIX_5-8_7-2

source_name: MIX 5-8 exposure, mixture-7 treatment, 24h, replicate 2


title: RDX_70%-1

description: Gene expression after 24h exposure to 29.8 mg/L RDX

source_name: RDX exposure, RDX treatment, 24h, replicate 1

value: 29.8 mg/L RDX


title: MIX_5-8_6-5

description: Gene expression after 24h exposure to water from mixture 6 (0.145 mg/L TNT, 2.779 mg/L 24DNT, 0.046 mg/L DNB, 0.242 mg/L TNB, 12.118 mg/L RDX)

source_name: MIX 5-8 exposure, mixture-6 treatment, 24h, replicate 5


title: MIX_5-8_6-3

source_name: MIX 5-8 exposure, mixture-6 treatment, 24h, replicate 3


title: MIX_5-8_6-2

source_name: MIX 5-8 exposure, mixture-6 treatment, 24h, replicate 2


title: MIX_5-8_6-1

source_name: MIX 5-8 exposure, mixture-6 treatment, 24h, replicate 1


title: MIX_5-8_5-3

description: Gene expression after 24h exposure to water from mixture 5 (2.061 mg/L TNT, 0.306 mg/L 24DNT, 0.053 mg/L DNB, 0.185 mg/L TNB)

source_name: MIX 5-8 exposure, mixture-5 treatment, 24h, replicate 3


title: MIX_5-8_5-4

source_name: MIX 5-8 exposure, mixture-5 treatment, 24h, replicate 4


title: MIX_5-8_5-1

source_name: MIX 5-8 exposure, mixture-5 treatment, 24h, replicate 1


title: MIX_5-8_5-2

source_name: MIX 5-8 exposure, mixture-5 treatment, 24h, replicate 2


title: MIX_5-8_5-5

source_name: MIX 5-8 exposure, mixture-5 treatment, 24h, replicate 5


title: MIX_5-8_CON-4

source_name: MIX 5-8 exposure, control treatment, 24h, replicate 4


title: MIX_5-8_CON-3

source_name: MIX 5-8 exposure, control treatment, 24h, replicate 3


title: Wild-type 2 h after shifting temperature rep1

city: Kyoto

first: Takuma

last: Sugi

address: Yoshida Honmachi

country: Japan

institute: Kyoto University

hyb_protocol: 50 μl of flagmented, biotin-labeled cDNA was mixed with hybridization cocktail (Affymetrix) and hybridized to the Affymetrix C. elegans chip for 18 h at 45°C, according to the Affymetrix Expression Analysis Technical Manual.

scan_protocol: GeneChips were scanned using the GeneChip Scanner 3000 TG system.

data_processing: Primary intensity values from each hybridization were scaled versus a global average signal from the same array and normalized by Robust Multichip Average analysis (RMA).

organism: Caenorhabditis elegans

source_name: Whole body at 2 h after shifting temperature from 23 degrees to 17 degrees

label_protocol: The amplified cDNA was fragmented and biotinylated using FL-Ovation cDNA Biotin Module V2 (NuGEN)

growth_protocol: Animals were grown at 23 degrees until they grew to adult and then shifted to 17 degress. Microarray were performed just before shifting temperature  and at  every 1 hour after shifiting temperature

extract_protocol: The hatched worms were collected from the plates by S-basal buffer (5.7 mM K2HPO4, 44 mM KH2PO4, 100 mM NaCl, 5 μg/ml cholesterol), and a fraction of worms was used for the temperature shift thermotaxis assay, whereas the remaining worms were killed and dissolved in TRI regent (Ambion) for microarray analysis.

treatment_protocol: For synchronization of worm growth, animals were initially grown to starvation in a 60 mm nematode growth media (NGM) plate at 23°C. Half of agar in the 60 mm plate was split into four pieces, and two pieces were placed on a 150 mm plate. The resultant plates were incubated at 23°C until most of the food was depleted. The worms were collected from the plates using M9 buffer (22 mM KH2PO4, 42 mM Na2HPO4, 85 mM NaCl, 1 mM MgSO4) and then resuspended in 75 ml bleach solution (15 ml Chlorox, 3.75 ml 10N NaOH, 56.25 ml water). Worms were transferred to a 200 ml glass beaker with a stir bar and incubated for 5 min while stirring rapidly. When the majority of adults burst, the solution was passed through a 53 μm nylon mesh (Tanaka Sanjiro Co., Ltd.) to separate intact embryos from worm debris. Embryos were harvested by centrifugation, resuspended in 2 ml M9 buffer and split equally over six 150 mm NGM plates. The plates were incubated at 23°C for 2.5 days for microarray analysis.

tag: strain

value: N2 Bristol

value: wild-type

value: adult

value: whole body


title: Wild-type 1 h after shifting temperature rep2

source_name: Whole body at 1 h after shifting temperature from 23 degrees to 17 degrees


title: MIX_5-8_CON-2

source_name: MIX 5-8 exposure, control treatment, 24h, replicate 2


title: Wild-type 4 h after shifting temperature rep4

source_name: Whole body at 4 h after shifting temperature from 23 degrees to 17 degrees


title: Wild-type 0 h after shifting temperature rep4

source_name: Whole body before shifting temperature from 23 degrees to 17 degrees


title: Wild-type 4 h after shifting temperature rep3


title: Wild-type 1 h after shifting temperature rep1


title: Wild-type 0 h after shifting temperature rep3


title: Wild-type 2 h after shifting temperature rep2


title: MIX_5-8_CON-1

source_name: MIX 5-8 exposure, control treatment, 24h, replicate 1


title: MIX_5-8_CON-5

source_name: MIX 5-8 exposure, control treatment, 24h, replicate 5


title: MIX_1-4_4-5

description: Gene expression after 24h exposure to water from mixture 4 (0.972 mg/L TNT, 0.185 mg/L TNB)

source_name: MIX 1-4 exposure, mixture-4 treatment, 24h, replicate 5


title: Wild-type 4 h after shifting temperature rep2


title: MIX_1-4_4-4

source_name: MIX 1-4 exposure, mixture-4 treatment, 24h, replicate 4

value: mixture 4 (0.972 mg/L TNT, 0.185 mg/L TNB)


title: Wild-type 0 h after shifting temperature rep2


title: MIX_1-4_3-5

description: Gene expression after 24h exposure to water from mixture 3 (0.999 mg/L TNT, 1.242 mg/L 24DNT)

source_name: MIX 1-4 exposure, mixture-3 treatment, 24h, replicate 5


title: Wild-type 0 h after shifting temperature rep1


title: MIX_1-4_4-2

source_name: MIX 1-4 exposure, mixture-4 treatment, 24h, replicate 2


title: MIX_1-4_3-3

source_name: MIX 1-4 exposure, mixture-3 treatment, 24h, replicate 3

value: mixture 3 (0.999 mg/L TNT, 1.242 mg/L 24DNT)


title: MIX_1-4_3-4

source_name: MIX 1-4 exposure, mixture-3 treatment, 24h, replicate 4


title: MIX_1-4_4-3

source_name: MIX 1-4 exposure, mixture-4 treatment, 24h, replicate 3


title: MIX_1-4_3-2

source_name: MIX 1-4 exposure, mixture-3 treatment, 24h, replicate 2


title: MIX_1-4_2-4

description: Gene expression after 24h exposure to water from mixture 2 (1.061 mg/L TNT, 1.106 mg/L DNB, 0.563 mg/L RDX)

source_name: MIX 1-4 exposure, mixture-2 treatment, 24h, replicate 4


title: Primary Effusion Lymphoma cell line VG1

hyb_protocol: standard Affymetrix protocol

scan_protocol: standard Affymetrix protocol

data_processing: Raw .CEL and .CHP files were imported into Genomics Suite software available from Partek Incorp. and analyzed following Copy Number and LOH workflows

source_name: PEL cell line VG1

label_protocol: standard Affymetrix protocol

growth_protocol: Cells were grown as per standard protocol

value: Diffuse-Large B-cell Lymphoma (DLBCL)


title: Δmbs1 exp1

city: Seoul

first: Yong-Sun

last: Bahn

address: 134 Shinchon-dong Seodaemun-gu

department: Biotechnology

country: South Korea

institute: Yonsei University

description: Ctr vs Δmbs1_exp1

hyb_protocol: Microarray Hybridization and Washing.  A C. neoformans serotype D 70-mer microarray slide containing 7,936 probes (Duke University) was pre-hybridized at 42°C in 60 ml of pre-hybridization buffer (42.4 ml sterile distilled water, 2 ml 30% BSA (Sigma), 600 µl 10% SDS, 15 ml 20x SSC (Saline-Sodium Citrate, 3 M NaCl, 0.3 M Na-citrate, pH 7.0)), washed with distilled water and isopropanol, and dried by brief centrifugation (110g, 2 min).  The Cy3- and Cy5-labeled cDNA samples were combined, concentrated through a Microcon30 filter, and vacuum-dried.  The dried cDNA samples were resuspended with 24 µl of 1x hybridization buffer (250 µl 50% formamide, 125 µl 20x SSC, 5 µl 10% SDS, 120 µl dH2O, total 500 µl), added with 1 µl polyA tail DNA (Sigma), further incubated at 100°C for 3 min and allowed to cool for 5 min at room temperature.  The microarray slides were aligned into the hybridization chamber (DieTech), removed of any dust, and covered by Lifterslips (Erie Scientific).  The Cy3/Cy5-labeled cDNA samples were applied in between Lifterslips and slides.  To prevent slides from drying, 10 µl of 3x SSC buffer was applied onto the slides, which were subsequently incubated for 16 hr at 42°C.  After incubation, the microarray slides were washed with three different washing buffers (wash buffer 1 (10 ml 20x SSC, 600 µl 10% SDS, 189.4 ml dH2O, preheated at 42°C), wash buffer 2 (3.5 ml 20x SSC, 346.5 ml dH2O), wash buffer 3 (0.88 ml 20x SSC, 349.12 ml dH2O)) for 2, 5, and 5 min, respectively, on an orbital shaker.  Three independent DNA microarrays with 3 independent biological replicates were performed

scan_protocol: After hybridization and washing, the microarray slides were scanned with a GenePix 4000B scanner (Axon Instrument) and the signals were analyzed with GenePix Pro (Ver. 4.0) and gal file (http://genome.wustl.edu/activity/ma/cneoformans).

data_processing: Since total RNAs isolated from serotype A C. neoformans strains were hybridized on the microarray slides printed with the serotype D 70-mer oligonucleotide sequences, the serotype A gene sequences were mapped to those of the serotype D using BLASTN.  C. neoformans H99 gene sequences that were updated at 24 November 2008 were downloaded from Broad institute (http://www.broad.mit.edu/annotation/genome/cryptococcus_neoformans).  The serotype D C. neoformans JEC21 gene sequences that were updated 27 April 2005 were downloaded from JCVI (ftp://ftp.tigr.org/pub/data/Eukaryotic_Projects/c_neoformans/).  The functional category of each C. neoformans H99 gene was assigned using the NCBI KOG database (http://www.ncbi.nlm.nih.gov/COG/grace/shokog.cgi).  Using the serotype A gene sequence, each S. cerevisiae gene name or ID listed in the supplementary Tables was identified by blastp search (e-value cut-off: e-6). For hierarchical and statistical analysis, data transported from GenePix software were analyzed with GeneSpring (Agilent) by employing LOWESS normalization, reliable gene filtering, clustering (standard correlation and average linkage) and zero-transformation, and ANOVA analysis (P<0.01), and Microsoft Excel software (Microsoft).

organism: Cryptococcus neoformans H99

source_name: Δmbs1  exp1

label_protocol: For cDNA synthesis, the total RNA concentration was adjusted to 1 µg/µl with DEPC-treated water, and 15 µl of the total RNA (15 µg) was added to 1 µl of 5 µg/µl oligo dT (5’-TTTTTTTTTTTTTTTTTTTTV-3’)/pdN6 (Amersham, 1:1 mixture of 10 µg/µl, respectively), incubated at 70°C for 10 min, and place on ice for 10 min.  Then 15 µl of cDNA synthesis mixture (3 µl 0.1 M DTT, 0.5 µl RNasin (Promega), 0.6 µl aa-dUTP (5-(3-aminoallyl)-2’-deoxyuridine 5’-triphosphate)/dNTPs (a mixture of 6 µl dTTP (100 mM), 4 µl aa-dUTP (100 mM), 10 µl dATP (100 mM), 10 µl dCTP (100 mM), 10 µl dGTP (100 mM)), 1.5 µl AffinityScript reverse transcriptase (Stratagene), 3 µl AffinityScript buffer, 7 µl water) was added and incubated at 42°C for 2 hrs.  Then 10 µl of 1 N NaOH and 10 µl of 0.5 M EDTA (pH 8.0) were added and incubated at 65°C for 15 min.  After incubation, 25 µl of 1 M HEPES buffer (pH 8.0) and 450 µl of DEPE-treated water were added, and the whole mixture was concentrated through a Microcon30 filter (Millipore) and vacuum-dried for 1 hr. For Cy3 and Cy5 (Amersham) labeling of the prepared cDNA, Cy3 and Cy5 were dissolved in 10 µl DMSO and 1.25 µl of each dye was aliquoted into separate tubes.  The cDNAs prepared as described above were added to 9 µl of 0.05 M Na-bicarbonate (pH 8.0) and incubate at room temperature for 15 min.  The cDNAs prepared from pooled reference RNAs were mixed with Cy3 as a control and the cDNAs prepared from each test RNA (each experimental condition) were mixed with Cy5.  For a dye-swap experiment, control and test RNAs were labeled oppositely.  Each mixture was further incubated at room temperature for 1 hr in the dark and purified by QIAquick PCR purification kit (QIAGEN).

growth_protocol: The wild-type H99 strain mbs1 (YSB488) mutant strains were grown in 50 ml YPD medium at 30°C for 16 h. Then 2.5 ml of the overnight culture was inoculated into 50 ml of fresh YPD medium and further incubated for 4 h at 30°C  to an optical density at 600 nm (OD600 =1.0)

extract_protocol: For total RNA isolation, the lyophilized cell pellets were added to 3 ml volume of sterile 3 mm glass bead (SIGMUND LINDER), homogenized by shaking, added to 4 ml of TRizol reagent (Tri reagent, Molecular Research Center), and allowed to incubate at room temperature for 5 min.  Then 800 µl of chloroform was added, incubated for 3 min at room temperature, transferred to 15 ml round-bottom tubes (SPL), and centrifuged by 10,000 rpm at 4°C for 15 min (Sorvall SS-34 rotor).  Two milliliters of the supernatant was transferred to a new round-bottom tube, 2 ml isopropanol was added, inverted several times, and allowed to incubate for 10 min at room temperature.  Then the mixture was re-centrifuged at 10,000 rpm at 4°C for 10 min, and the pellet was washed with 4 ml of 75% ethanol diluted with diethylpyrocarbonate (DEPC)-treated water and centrifuged at 8,000 rpm at 4°C for 5 min.  The pellet was dried and resuspended with 500 µl DEPC-treated water.  Concentration and purity of total RNA samples were calculated by measuring OD260nm and gel-electrophoresis, respectively.  For control total RNA, all total RNAs prepared from WT, tco1, tco2, and hog1 mutant cells grown in conditions described above were pooled (pooled reference RNAs).

treatment_protocol: 50 ml culture wasrapidly frozen in liquid nitrogen and lyophilized overnight. The lyophilized cells were subsequently used for total RNA isolation.  As biological replicates for DNA microarrays, three independent cultures for each strain were prepared for total RNA isolation.

source_name: pooled total RNA from all strain all treatment

value: pooled total RNA from wild type and mutant


title: WT exp3

description: Ctr vs WT_exp3

source_name: WT  exp3

value: wild type


title: MIX_1-4_1-5

description: Gene expression after 24h exposure to water from mixture 1 (1 mg/L TNT, 1.245 mg/L 24DNT, 1.13 mg/L 26DNT, 1.107 mg/L DNB, 0.67 mg/L TNB, 0.334 mg/L RDX)

source_name: MIX 1-4 exposure, mixture-1 treatment, 24h, replicate 5


title: Δmbs1 exp3

description: Ctr vs Δmbs1_exp3

source_name: Δmbs1  exp3


title: MIX_1-4_2-1

source_name: MIX 1-4 exposure, mixture-2 treatment, 24h, replicate 1

value: mixture 2 (1.061 mg/L TNT, 1.106 mg/L DNB, 0.563 mg/L RDX)


title: MIX_1-4_2-2

source_name: MIX 1-4 exposure, mixture-2 treatment, 24h, replicate 2

value: whole organism


title: WT exp2

description: Ctr vs WT_exp2

source_name: WT  exp2


title: MIX_1-4_2-5

source_name: MIX 1-4 exposure, mixture-2 treatment, 24h, replicate 5


title: Primary Effusion Lymphoma cell line JSC1

source_name: PEL cell line JSC1


title: Δmbs1 exp2

description: Ctr vs Δmbs1_exp2

source_name: Δmbs1  exp2


title: WT exp1

description: Ctr vs WT_exp1

source_name: WT  exp1


title: MIX_1-4_1-3

source_name: MIX 1-4 exposure, mixture-1 treatment, 24h, replicate 3

value: mixture 1 (1 mg/L TNT, 1.245 mg/L 24DNT, 1.13 mg/L 26DNT, 1.107 mg/L DNB, 0.67 mg/L TNB, 0.334 mg/L RDX)


title: MIX_1-4_1-4

source_name: MIX 1-4 exposure, mixture-1 treatment, 24h, replicate 4


title: Primary Effusion Lymphoma cell line mBC1.2

source_name: PEL cell line BC1, xenograft 2


title: Δhog1 +flu 136 exp3

description: Ctr vs Δhog1 +flu_136

source_name: Δhog1 +flu 136

growth_protocol: The wild-type H99 strain and tco1 (YSB355) and tco2 (YSB281), hog1 (YSB64) mutant strains were grown in 50 ml YPD medium at 30°C for 16 h. Then 5 ml of the overnight culture was inoculated into 100 ml of fresh YPD medium and further incubated for 4 h at 30°C  to an optical density at 600 nm (OD600 =1.0)

treatment_protocol: The inoculated 100 ml YPD medium divided into two 50 ml flask. One is treated with 25μg/ml of flucytosine and incubated for 90 min at 30°C. Another 50 ml culture has no flucytosine treatment and was grown under the same condition.

tag: treatment

value: Flucytosine

value: pooled total RNA from all strain all treatment


title: Wild-type 4 h after shifting temperature rep1

source_name: Whole body at 4 h after shifting temperature from 23 degrees to 17 degrees


title: MIX_1-4_1-1

source_name: MIX 1-4 exposure, mixture-1 treatment, 24h, replicate 1


title: Primary Effusion Lymphoma cell line mBC2.2

source_name: PEL cell line BC2, xenograft 2


title: Primary Effusion Lymphoma cell line BC2

source_name: PEL cell line BC2


title: Primary Effusion Lymphoma cell line BCP1

source_name: PEL cell line BCP1


title: MIX_1-4_1-2

source_name: MIX 1-4 exposure, mixture-1 treatment, 24h, replicate 2


title: WT +flu 139 exp3

description: Ctr vs WT +flu_139

source_name: WT +flu 139

value: WT

source_name: pooled total RNA from all strain all treatment


title: Primary Effusion Lymphoma cell line mBC1.1

source_name: PEL cell line BC1, xenograft 1


title: MIX_1-4_CON-5

source_name: MIX 1-4 exposure, control treatment, 24h, replicate 5

value: control


title: Primary Effusion Lymphoma cell line AP5

source_name: PEL cell line AP5


title: Δtco1 +flu 138 exp3

description: Ctr vs Δtco1 +flu_138

source_name: Δtco1 +flu 138


title: MIX_1-4_CON-2

source_name: MIX 1-4 exposure, control treatment, 24h, replicate 2


title: Primary Effusion Lymphoma cell line BC3

source_name: PEL cell line BC3


title: Δtco2 +flu 137 exp3

description: Ctr vs Δtco2 +flu_137

source_name: Δtco2 +flu 137


title: Δtco1 -flu 142 exp3

description: Ctr vs Δtco1 -flu_142

source_name: Δtco1 -flu 142

value: untreated


title: Primary Effusion Lymphoma cell line BCBL

source_name: PEL cell line BCBL


title: Primary Effusion Lymphoma cell line BC5

source_name: PEL cell line BC5


title: MIX_1-4_CON-1

source_name: MIX 1-4 exposure, control treatment,24h, replicate 1


title: Δtco2 -flu 141 exp3

description: Ctr vs Δtco2 -flu_141

source_name: Δtco2 -flu 141


title: WT -flu 143 exp3

description: Ctr vs WT -flu_143

source_name: WT -flu 143


title: MIX_1-4_CON-3

source_name: MIX 1-4 exposure, control treatment, 24h, replicate 3


title: Δhog1 -flu 140 exp3

description: Ctr vs Δhog1 -flu_140

source_name: Δhog1 -flu 140


title: Primary Effusion Lymphoma cell line BC1

source_name: PEL cell line BC1


title: Primary Effusion Lymphoma cell line mBC2.1

source_name: PEL cell line BC2, xenograft 1


title: MIX_1-4_CON-4

source_name: MIX 1-4 exposure, control treatment, 24h, replicate 4


title: Δhog1 +flu 133 exp2

description: Ctr vs Δhog1 +flu_133

source_name: Δhog1 +flu 133

source_name: pooled total RNA from all strain all treatment


title: Primary Effusion Lymphoma cell line HHB2

source_name: PEL cell line HHB2


title: Primary Effusion Lymphoma cell line TY1

source_name: PEL cell line TY1


title: LAAP_108-5

description: Gene expression after 24h exposure to water from LAAP well 108

source_name: LAAP Exposure, well 108, 24h, replicate 5

tag: well


title: patient17

city: STRASBOURG

first: Jean-Nicolas

last: SCHICKEL

address: 15, rue rené descartes

country: France

institute: CNRS UPR9021

description:
Gene expression data from human sorted B cells.
P17
JLP_P17_U133_2.CEL

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized on Affymetrix GeneChip human genome U133 plus 2.0 (with probe sets representing 38,572 UniGene clusters) according to the manufacturer’s instructions. After hybridization and washings, arrays were stained with PE-conjugated streptavidin (10 μg/ml) before scanning.

scan_protocol: GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.

data_processing:
Raw Affymetrix data were analyzed using R (R Development Core Team, 2008; The Comprehensive R Archive Network: http://cran.r-project.org/) and Bioconductor (Bioconductor: http://www.bioconductor.org/) softwares. The quality of the 27 Affymetrix genechips and RNA was assessed using the Bioconductor AffyPLM and simpleaffy packages, with qc, AffyRNAdeg, fitPLM, image, RLE and NUSE functions. For normalization and background correction.  Raw values were pre-processed with RMA or GCRMA (library simpleAffy).
The Sample data table shows genes that are considered as expressed by affy (P) at least in one of the patients and controls, thus, reporting ~65% of the  data rows in the U133 Plus 2.0 Array.

source_name: Human sorted B cells

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: Peripheral blood was drawn into heparin-containing sterile tubes and peripheral blood mononuclear cells were prepared by Ficoll (Amersham) density gradient centrifugation for immediate use. B cells were labeled with a biotin anti-CD19 monoclonal antibody (HIB19 clone, Pharmingen) at 4°C and revealed by phycoerythrin-labelled streptavidin (Biomeda) before immediate B cell sorting with high speed cell sorter (FACS Diva, Beckton-Dickinson).

tag: individual

tag: disease state

value: Systemic lupus erythematosous (SLE)

value: blood

value: Sorted B cell


title: LAAP_108-4

source_name: LAAP Exposure, well 108, 24h, replicate 4


title: patient16

description:
Gene expression data from human sorted B cells.
P16
JLP_P16_U133_2.CEL


title: Primary Effusion Lymphoma cell line BCLM

source_name: PEL cell line BCLM


title: Δtco2 +flu 132 exp2

description: Ctr vs Δtco2 +flu_132

source_name: Δtco2 +flu 132


title: Primary Effusion Lymphoma cell line AP2

source_name: PEL cell line AP2


title: LAAP_108-3

source_name: LAAP Exposure, well 108, 24h, replicate 3


title: Δtco1 +flu 131 exp2

description: Ctr vs Δtco1 +flu_131

source_name: Δtco1 +flu 131


title: patient14

description:
Gene expression data from human sorted B cells.
P14
JLP_P14_U133_2.CEL


title: LAAP_108-2

source_name: LAAP Exposure, well 108, 24h, replicate 2


title: LAAP_108-1

source_name: LAAP Exposure, well 108, 24h, replicate 1


title: LAAP_85-5

description: Gene expression after 24h exposure to water from LAAP well 85

source_name: LAAP Exposure, well 85, 24h, replicate 5


title: patient12

description:
Gene expression data from human sorted B cells.
P12
JLP_P12_U133_2.CEL


title: Δtco1 -flu 127 exp2

description: Ctr vs Δtco1 -flu_127

source_name: Δtco1 -flu 127


title: LAAP_85-4

source_name: LAAP Exposure, well 85, 24h, replicate 4


title: Δtco2 -flu 128 exp2

description: Ctr vs Δtco2 -flu_128

source_name: Δtco2 -flu 128


title: WT +flu 130 exp2

description: Ctr vs WT +flu_130

source_name: WT +flu 130

source_name: pooled total RNA from all strain all treatment


title: patient13

description:
Gene expression data from human sorted B cells.
P13
JLP_P13_U133_2.CEL


title: patient11

description:
Gene expression data from human sorted B cells.
P11
JLP_P11_U133_2.CEL


title: Δhog1 -flu 129 exp2

description: Ctr vs Δhog1 -flu_129

source_name: Δhog1 -flu 129


title: WT -flu 126 exp2

description: Ctr vs WT -flu_126

source_name: WT -flu 126


title: patient15

description:
Gene expression data from human sorted B cells.
P15
JLP_P15_U133_2.CEL

source_name: Human sorted B cells


title: patient10

description:
Gene expression data from human sorted B cells.
P10
JLP_P10_U133_2.CEL


title: LAAP_85-3

source_name: LAAP Exposure, well 85, 24h, replicate 3


title: Δhog1 +flu 134 exp1

description: Ctr vs Δhog1 +flu_134

source_name: Δhog1 +flu 134


title: LAAP_85-2

source_name: LAAP Exposure, well 85, 24h, replicate 2


title: patient9

description:
Gene expression data from human sorted B cells.
P09
JLP_P09_U133_2.CEL


title: Δtco2 +flu 143 exp1

description: Ctr vs Δtco2 +flu_143

source_name: Δtco2 +flu 143


title: LAAP_85-1

source_name: LAAP Exposure, well 85, 24h, replicate 1


title: Δtco1 +flu 145 exp1

description: Ctr vs Δtco1 +flu_145

source_name: Δtco1 +flu 145


title: LAAP_CON-4

description: Gene expression after 24h exposure to control water

source_name: LAAP Exposure, Control treatment, 24h, replicate 4


title: patient5

description:
Gene expression data from human sorted B cells.
P05
JLP_P05_U133_2.CEL


title: WT +flu 146 exp1

description: Ctr vs WT +flu_146

source_name: WT +flu 146


title: Normal Control Tonsil1 [AffySty250]

source_name: tonsil tissue from healthy donor

value: B-cell

value: tonsil tissue from healthy donor


title: patient7

description:
Gene expression data from human sorted B cells.
P07
JLP_P07_U133_2.CEL


title: Normal Control Tonsil2 [AffySty250]


title: patient8

description:
Gene expression data from human sorted B cells.
P08
JLP_P08_U133_2.CEL


title: ES-EP_B

city: Bronx

first: Sandeep

middle: Nagaraj

last: Wontakal

state: NY

address: 1300 Morris Park Ave Chanin 402

department: Cell Biology

institute: Albert Einstein College of Medicine

description: RMA expression value derived from GeneSpring GX software

hyb_protocol: Samples were hybridized with GeneChip Mouse Gene 1.0 ST by the AECOM microarray facility following Affymetrix guidelines.

scan_protocol: Samples were scanned by the AECOM microarray facility as suggested by Affymetrix.

data_processing: Peak detection to mm9 was done using cisGenome and spp software.

source_name: ES-EP cells

label_protocol: Labeling was performed as suggested by Affymetrix by the AECOM microarray facility.

growth_protocol: MEL cells were grown in DMEM supplemented with 10% FBS (Gemini), 2mM L-glutamine, and 5mg/ml puromycin. ES-EPs were cultured in StemPro34 media (Invitrogen) supplmented with 2u/ml Epogen (Amgen), 40ng/ml hIGF-1 (Sigma), 10-6M dexamethosone (Sigma), 100ng/ml murine SCF (R&D Systems/Invitrogen), and 0.1% -mercaptoethanol (Gibco). ES-EP were maintained between 1-6x106 cells/ml by adding fresh media daily.

extract_protocol: RNA was isolated from >1x106 cells using the RNeasy RNA isolation kit (Qiagen).

tag: growth conditions

value: proliferating

value: ES-EP cells


title: patient6

description:
Gene expression data from human sorted B cells.
P06
JLP_P06_U133_2.CEL


title: Burkitt's Lymphoma cell line BJAB [AffySty250]

source_name: Burkitt's Lymphoma cell line BJAB

tag: cell line

value: Burkitt's Lymphoma cell line BJAB


title: Burkitt's-like Lymphoma cell line DG75 [AffySty250]

source_name: Burkitt's-like Lymphoma cell line DG75

value: Burkitt's-like Lymphoma cell line DG75


title: patient4

description:
Gene expression data from human sorted B cells.
P04
JLP_P04_U133_2.CEL


title: LAAP_CON-3

source_name: LAAP Exposure, Control treatment, 24h, replicate 3


title: MEL_B

source_name: Murine erythroleukemia (MEL) cells stably transfected with Gata-1 fused to ER

value: MEL cells


title: LAAP_CON-2

source_name: LAAP Exposure, Control treatment, 24h, replicate 2

value: whole organism


title: patient3

description:
Gene expression data from human sorted B cells.
P03
JLP_P03_U133_2.CEL


title: LAAP_CON-1

source_name: LAAP Exposure, Control treatment, 24h, replicate 1


title: Δhog1 -flu 147 exp1

description: Ctr vs Δhog1 -flu_147

source_name: Δhog1 -flu 147

source_name: pooled total RNA from all strain all treatment


title: Primary Effusion Lymphoma cell line VG1 [AffySty250]

source_name: PEL cell line VG1

value: PEL cell line VG1


title: ES-EP_A


title: patient2

description:
Gene expression data from human sorted B cells.
P02
JLP_P02_U133_2.CEL

source_name: Human sorted B cells


title: MEL_A


title: patient1

description:
Gene expression data from human sorted B cells.
P01
JLP_P01_U133_2.CEL


title: WT -flu 150 exp1

description: Ctr vs WT -flu_150

source_name: WT -flu 150


title: Normal Control Tonsil5 [AffySty250]


title: Normal Control Tonsil6 [AffySty250]


title: Δtco2 -flu 148 exp1

description: Ctr vs Δtco2 -flu_148

source_name: Δtco2 -flu 148


title: Primary Effusion Lymphoma cell line TY1 [AffySty250]

source_name: PEL cell line TY1

value: PEL cell line TY1


title: Δtco1 -flu 149 exp1

description: Ctr vs Δtco1 -flu_149

source_name: Δtco1 -flu 149

value: pooled total RNA from all strain all treatment


title: LAAP_CON-5

source_name: LAAP Exposure, Control treatment, 24h, replicate 5


title: Primary Effusion Lymphoma cell line JSC1 [AffySty250]

source_name: PEL cell line JSC1

value: PEL cell line JSC1


title: 1,25(OH)2D3 treatment at T6, rep3

status: Public on Jun 22 2011

city: Winston-Salem

middle: D

last: Cramer

address: Medical Center Blvd

department: Cancer Biology

institute: Wake Forest University School of Medicine

description: Gene expression data from prostate progenitor/stem cells treated with 6 hrs 100 nM 1,25(OH)2D5

hyb_protocol: Following Affymetrix protocol 15 ug of cRNA was fragmented then loaded on the mouse GeneChip 430 2.0 and hybridized 16 hrs at 45C and rotating at 60 rpms. Chips were washed and stained on an Affymetrix Fluidics 450.

scan_protocol: GeneChips were scanned using Affymetrix Scanner 3000

data_processing: The data was analyzed using the GeneChip Operating Software, version 1.4, which uses the standard MAS 5.0, with default settings and global scaling as normalization method. The Target signal was set at 500.

source_name: Prostate progenitor/stem cells treated with 100 nM 1,25(OH)2D3 for 6 hrs

label_protocol: Following Affymetrix protocol we set up 5 ug of Total RNA for cDNA synthesis. The entire sample was cleaned and used for cRNA synthesis and biotin labeling.

growth_protocol: Adult mouse prostatic progenitor/stem cells were isolated and maintained in culture as described in PMID: 15599944 and PMID: 18055450

extract_protocol: RNA was extracted according to the Chomczynski and Sacchi method described in PMID: 2440339

treatment_protocol: Adult mouse prostate progenitor/stem cells were plated at 1 x 10^5 cells per 10 cm culture dish and grown to 70% confluency before treatment with vehicle (0.1% ethanol) or 100 nM 1,25(OH)2D3 in cell culture media (n = 3 or 4).  Cells were treated with control or experimental media for 6 hrs or every 24 hrs for 48 hrs before RNA isolation.

value: Adult prostatic progenitor/stem cell

value: wild-type B1/6; 127/SVEV mice

value: Cultured cells from 10 wk old mice, passage 22


title: Ethanol treatment at T48, rep3

description: Gene expression data from prostate progenitor/stem cells treated with 48 hr ethanol

source_name: Prostate progenitor/stem cells treated with ethanol for 48 hrs


title: Primary Effusion Lymphoma cell line BC5 [AffySty250]

source_name: PEL cell line BC5

value: PEL cell line BC5


title: 1,25(OH)2D3 treatment at T6, rep1

description: Gene expression data from prostate progenitor/stem cells treated with 6 hrs 100 nM 1,25(OH)2D3


title: 1,25(OH)2D3 treatment at T48, rep1

description: Gene expression data from prostate progenitor/stem cells treated with 48 hr 100 nM 1,25(OH)2D3

source_name: Prostate progenitor/stem cells treated with 100 nM 1,25(OH)2D3 for 48 hrs


title: 1,25(OH)2D3 treatment at T6, rep2

description: Gene expression data from prostate progenitor/stem cells treated with 6 hrs 100 nM 1,25(OH)2D4


title: Ethanol treatment at T6, rep2

description: Gene expression data from prostate progenitor/stem cells treated with 6 hrs ethanol

source_name: Prostate progenitor/stem cells treated with ethanol for 6 hrs


title: Ethanol treatment at T6, rep1


title: Ethanol treatment at T48, rep2


title: Ethanol treatment at T6, rep3


title: 1,25(OH)2D3 treatment at T48, rep2

description: Gene expression data from prostate progenitor/stem cells treated with 48 hr 100 nM 1,25(OH)2D4


title: Primary Effusion Lymphoma cell line BCLM [AffySty250]

source_name: PEL cell line BCLM

value: PEL cell line BCLM


title: Primary Effusion Lymphoma cell line BCBL [AffySty250]

source_name: PEL cell line BCBL

value: B-cell

value: PEL cell line BCBL


title: M0611b

city: Johnston

first: Kevin

middle: Robert

last: Hayes

state: IA

address: 7200 NW 62nd Ave

institute: Pioneer Hi-Bred International

description:
A0210298CR013
raw data filename: US23502373_251553810332_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.

hyb_protocol: Standard Agilent Hybridization protocol

scan_protocol: After hybridization, the microarray slides were washed and scanned immediately with Agilent’s G2505B DNA Microarray Scanner at two laser power settings (100% and 10%).  The images were inspected visually for image artifacts, and feature intensities were extracted, filtered, and normalized with Agilent’s Feature Extraction Software (v 9.5.1).

data_processing:
A multidimensional, weighted least-squares method was used to obtain normalization parameters for the data based on affine transformations.
Two-channel hybridizations were considered as single channel. Therefore, the same raw data file is linked to two Samples appended as _Cy3 and _Cy5.
Data Normalized as described via multidimensional, weighted least-squares method

organism: Zea mays

label_protocol: Each mRNA sample was made into double stranded DNA, amplified by an in-vitro transcription reaction and labeled with Cy3 or Cy5 fluorescent dyes using Agilent’s Low RNA Linear Amp Kit.

growth_protocol: Plants were germinated and grown in Turface MVP contained in DeepotTM plastic conical pot and tray systems (Stuewe and Sons, Tangent, OR (D25L [pots], D50T [trays])).  Seeds were planted approximately 2cm below the top of the tube/Turface MVP and germinated for one week in diH2O submerged so that the seeds were just above the water line.  After germination, the water was drained and a media pumping system was initiated.  A humidity cover was in place from the initial germination until plants were approximately 6 inches tall.  Modified Hoagland’s Solution (1mM KH2PO4, 2.5mM KNO3, 1.25mM Ca(NO3)2, 1mM MgSO4, 0.75mM CaCl2, SPRINT330 such that 0.006mM with respect to Iron, 0.03mM FeSO4, 1μM H3Bo3, 1μM MnCl2, 1μM ZnSo4, 1μM CuSO4, 1μM NaMoO4) was pumped into the tanks until the tubes were submerged but the vegetative growth remained dry.  The nutrient solution remained in the tank for approximately 3 minutes before draining.  The submersion/drainage system repeated every 3 hours for the 3 weeks following germination.  Growth chamber conditions were maintained at 50% humidity with a 16h day (26 C) and an 8h night (22 C). Light levels ranged from approximately 350 μM/m2/s at the base of the plant to -500 μM/m2/s at the top of the leaves at the time of harvest.

extract_protocol: Total RNA was isolated from frozen ground tissue (SQ Tissue Kit, Omega Biotek) and treated with DNase-I followed by polyA RNA isolation (Illustra mRNA Purification Kit, GE Biosciences) for all samples.  The total RNA and polyA RNA samples were visualized and quantified on Agilent’s Bioanalyzer to check for degradation and to determine the concentration.

treatment_protocol: The tissue sampled was the 1.5 cm tip of all crown roots that had developed at the time of harvest, representing the most metabolically active region based on whole-tissue visualization of triphenyl tetrazolium chloride staining.

value: root

tag: line


title: M0594b

description:
A0210293CR015
raw data filename: US23502373_251553810331_S01_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: 1,25(OH)2D3 treatment at T48, rep4

description: Gene expression data from prostate progenitor/stem cells treated with 48 hr 100 nM 1,25(OH)2D6


title: M0609b

description:
A0210297CR015
raw data filename: US23502373_251553810332_S01_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0592b

description:
A0210292CR013
raw data filename: US23502373_251553810331_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0614b

description:
A0210300CR013
raw data filename: US23502373_251553810327_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0598b

description:
A0210295CR015
raw data filename: US23502373_251553810335_S01_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0590b

description:
A0210291CR015
raw data filename: US23502373_251553810331_S01_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0587b

description:
A0210290CR013
raw data filename: US23502373_251553810331_S01_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0613b

description:
A0210299CR015
raw data filename: US23502373_251553810332_S01_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: Primary Effusion Lymphoma cell line BC1 [AffySty250]

source_name: PEL cell line BC1

value: PEL cell line BC1


title: Primary Effusion Lymphoma cell line BC3 [AffySty250]

source_name: PEL cell line BC3

value: PEL cell line BC3


title: Primary Effusion Lymphoma cell line BC2 [AffySty250]

source_name: PEL cell line BC2

value: PEL cell line BC2


title: Ethanol treatment at T48, rep1


title: M0568b

description:
A0210279CR015
raw data filename: US23502373_251553810327_S01_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0567b

description:
A0210278CR013
raw data filename: US23502373_251553810327_S01_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0586b

description:
A0210289CR015
raw data filename: US23502373_251553810335_S01_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0583b

description:
A0210288CR013
raw data filename: US23502373_251553810335_S01_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0570b

description:
A0210281CR013
raw data filename: US23502373_251553810329_S01_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0563b

description:
A0210274CR013
raw data filename: US23502373_251553810326_S01_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0548b

description:
A0210265CR015
raw data filename: US23502373_251553810325_S01_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0566b

description:
A0210277CR015
raw data filename: US23502373_251553810326_S01_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0565b

description:
A0210276CR013
raw data filename: US23502373_251553810326_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0581b

description:
A0210287CR015
raw data filename: US23502373_251553810330_S01_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0572b

description:
A0210282CR015
raw data filename: US23502373_251553810329_S01_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0564b

description:
A0210275CR015
raw data filename: US23502373_251553810326_S01_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0546b

description:
A0210263CR015
raw data filename: US23502373_251553810324_S01_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0543b

description:
A0210261CR015
raw data filename: US23502373_251553810324_S01_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0538b

description:
A0210257CR015
raw data filename: US23502373_251553810323_S01_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0552b

description:
A0210267CR013
raw data filename: US23502373_251553810325_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0573b

description:
A0210283CR013
raw data filename: US23502373_251553810329_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0545b

description:
A0210262CR013
raw data filename: US23502373_251553810324_S01_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0547b

description:
A0210264CR013
raw data filename: US23502373_251553810325_S01_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: 1,25(OH)2D3 treatment at T48, rep3

description: Gene expression data from prostate progenitor/stem cells treated with 48 hr 100 nM 1,25(OH)2D5


title: M0540b

description:
A0210258CR013
raw data filename: US23502373_251553810323_S01_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0517b

description:
A0210255CR015
raw data filename: US23502373_251553810322_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0537b

description:
A0210256CR013
raw data filename: US23502373_251553810322_S01_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0510b

description:
A0210253CR015
raw data filename: US23502373_251553810322_S01_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0515b

description:
A0210254CR013
raw data filename: US23502373_251553810322_S01_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: Primary Effusion Lymphoma cell line BCP1 [AffySty250]

source_name: PEL cell line BCP1

value: PEL cell line BCP1


title: M0501b

description:
A0210249CR015
raw data filename: US23502373_251553810334_S01_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0506b

description:
A0210251CR015
raw data filename: US23502373_251553810321_S01_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0494b

description:
A0210244CR013
raw data filename: US23502373_251553810333_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0474b

description:
A0210232CR015
raw data filename: US23502373_251553810318_S01_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0491b

description:
A0210241CR013
raw data filename: US23502373_251553810328_S02_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0495b

description:
A0210245CR015
raw data filename: US23502373_251553810333_S01_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0500b

description:
A0210248CR013
raw data filename: US23502373_251553810334_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0489b

description:
A0210239CR013
raw data filename: US23502373_251553810328_S02_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0490b

description:
A0210240CR015
raw data filename: US23502373_251553810328_S02_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0484b

description:
A0210237CR013
raw data filename: US23502373_251553810319_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0473b

description:
A0210231CR013
raw data filename: US23502373_251553810318_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0472b

description:
A0210230CR015
raw data filename: US23502373_251553810318_S01_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0505b

description:
A0210250CR013
raw data filename: US23502373_251553810321_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0492b

description:
A0210242CR015
raw data filename: US23502373_251553810328_S02_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0471b

description:
A0210229CR013
raw data filename: US23502373_251553810318_S01_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0498b

description:
A0210246CR013
raw data filename: US23502373_251553810334_S01_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0479b

description:
A0210235CR013
raw data filename: US23502373_251553810319_S01_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0487b

description:
A0210238CR015
raw data filename: US23502373_251553810319_S01_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0499b

description:
A0210247CR015
raw data filename: US23502373_251553810334_S01_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0481b

description:
A0210236CR015
raw data filename: US23502373_251553810319_S01_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0469b

description:
A0210228CR015
raw data filename: US23502373_251553810317_S01_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0466b

description:
A0210227CR013
raw data filename: US23502373_251553810317_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0465b

description:
A0210226CR015
raw data filename: US23502373_251553810317_S01_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0457b

description:
A0210223CR013
raw data filename: US23502373_251553810316_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0577b

description:
A0210286CR013
raw data filename: US23502373_251553810330_S01_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0542b

description:
A0210260CR013
raw data filename: US23502373_251553810323_S01_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0453b

description:
A0210221CR013
raw data filename: US23502373_251553810316_S01_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0461b

description:
A0210224CR015
raw data filename: US23502373_251553810316_S01_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0449b

description:
A0210219CR013
raw data filename: US23502373_251553810315_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0454b

description:
A0210222CR015
raw data filename: US23502373_251553810316_S01_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0447b

description:
A0210217CR013
raw data filename: US23502373_251553810315_S01_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0442b

description:
A0210213CR015
raw data filename: US23502373_251553810314_S01_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0444b

description:
A0210215CR013
raw data filename: US23502373_251553810314_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0446b

description:
A0210216CR015
raw data filename: US23502373_251553810314_S01_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0450b

description:
A0210220CR015
raw data filename: US23502373_251553810315_S01_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0436b

description:
A0210211CR015
raw data filename: US23502373_251553810313_S01_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0430b

description:
A0210208CR013
raw data filename: US23502373_251553810313_S01_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0433b

description:
A0210210CR013
raw data filename: US23502373_251553810313_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0438b

description:
A0210212CR013
raw data filename: US23502373_251553810314_S01_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0463b

description:
A0210225CR013
raw data filename: US23502373_251553810317_S01_GE2-v5_95_Feb07_1_1_cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0541b

description:
A0210259CR015
raw data filename: US23502373_251553810323_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0429b

description:
A0210207CR015
raw data filename: US23502373_251553810312_S01_GE2-v5_95_Feb07_1_2_Cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0428b

description:
A0210206CR013
raw data filename: US23502373_251553810312_S01_GE2-v5_95_Feb07_1_2_Cy3.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.


title: M0431b

description:
A0210209CR015
raw data filename: US23502373_251553810313_S01_GE2-v5_95_Feb07_1_1_cy5.txt
Gene Expression at Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.
Tip (~2 cm) of crown roots from 4-week-old SX19 Syn10 DH, B73 and Mo17 seedlings grown in turface (Hoagland with 5 mM nitrate) will be harvested, frozen in liquid nitrogen and stored at -80C.  The tissues will be grinded before sending to Mary/Brian.  Agilent array: two dyes, no dye swap.