title: renal allograft biopsy,  (U of A/Chicago) 67A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 56A1AGX7

status: Public on May 24 2010

type: RNA

city: Edmonton

first: Jeff

last: Reeve

state: Alberta

address: 250 HMRC University of Alberta

country: Canada

institute: University of Alberta

description: Samples with the same initial numbers in the sample names are replicates from the same patient. For the main analysis, only the earliest biopsy per patient was used, and only in those patients with a biopsy taken > 1 year post-transplant

hyb_protocol: Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0 Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using Gene Array Scanner (Affymetrix) and processed with GeneChip Operating Software Version 1.4.0 (Affynetrix).

data_processing: Microarray data files were preprocessed using robust multi-chip averaging (RMA) implemented in Bioconductor.

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: renal allograft biopsy

label_protocol: RNA (1-2ug) was labeled using GeneChip HT One-Cycle Target Labeling and Control kit. Quality of labeled cRNA was assessed on an Agilent 2100 Bioanalyzer (Agilent, Palo Alto, CA) before hybridization to HGU133Plus2.0. GeneChip (Affymetrix, Santa Clara, CA).

growth_protocol: All human renal allograft biopsies taken for clinical indication during the period specified above were included. Tissue was immediately placed in RNA later.

extract_protocol: Following homogenization of the tissue in 0.5ml of Trizol reagent (Invitrogen, Carlsbad, CA), total RNA was extracted and purified using the Rneasy Micro Kit (Quiagen, Ontario, Canada) (average yield 4ug/core, (RNA integrity number >7).

treatment_protocol: The immunosuppressive treatment of the patients before the biopsy was based on individual treatment regiments; the treatment after the biopsy was adjusted based on the histopathological diagnosis.

tag: failed=1/non failed=0

tag: time of biopsy post transplant (days)

tag: time from biopsy to failure/censoring (days)

tag: rejection/non rejection

value: nonrej

tag: sample included in the main analysis- the first biopsy per patient from the 105 late (> 1 year) patients


title: renal allograft biopsy,  (U of A/Chicago) 59A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 549A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 52A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 71A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 537A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 513A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 52A2AGX7

value: rej


title: renal allograft biopsy,  (U of A/Chicago) 58A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 54A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 61A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 509A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 507A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 49A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 49A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 49A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 47A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 48A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 473A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 468A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 441A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 460A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 44A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 45A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 444A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 44A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 406A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 424A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 40A6AGX7


title: renal allograft biopsy,  (U of A/Chicago) 40A8AGX7


title: renal allograft biopsy,  (U of A/Chicago) 412A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 40A5AGX7


title: renal allograft biopsy,  (U of A/Chicago) 426A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 43A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 44A5AGX7


title: renal allograft biopsy,  (U of A/Chicago) 441A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 403A2AGX8


title: renal allograft biopsy,  (U of A/Chicago) 402A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 43A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 38A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 40A7AGX7


title: renal allograft biopsy,  (U of A/Chicago) 39A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 397A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 397A5AGX7


title: renal allograft biopsy,  (U of A/Chicago) 39A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 38A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 397A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 362A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 346A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 361A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 371A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 349A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 343A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 342A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 323A2AGX8


title: renal allograft biopsy,  (U of A/Chicago) 388A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 360A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 338A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 380A1AX13


title: renal allograft biopsy,  (U of A/Chicago) 321A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 343A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 374A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 366A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 347A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 332A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 300A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 306A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 331A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 340A2AGX8


title: renal allograft biopsy,  (U of A/Chicago) 303A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 292A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 337A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 339A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 295A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 330A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 289A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 289A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 273A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 288A5AGX7


title: renal allograft biopsy,  (U of A/Chicago) 279A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 26A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 280A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 273A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 282A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 275A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 26A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 274A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 288A6AGX7


title: renal allograft biopsy,  (U of A/Chicago) 261A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 281A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 289A1AGX8


title: renal allograft biopsy,  (U of A/Chicago) 26A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 25A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 258A6AGX7


title: renal allograft biopsy,  (U of A/Chicago) 258A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 257A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 255A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 252A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 257A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 252A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 251A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 258A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 250A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 24A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 27A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 249A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 258A5AGX7


title: renal allograft biopsy,  (U of A/Chicago) 246A5AGX7


title: renal allograft biopsy,  (U of A/Chicago) 249A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 247A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 246A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 234A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 239A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 234A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 23A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 219A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 233A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 235A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 241A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 20A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 212A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 20A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 21A5AGX7


title: renal allograft biopsy,  (U of A/Chicago) 220A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 206A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 219A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 238A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 221A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 206A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 206A5AGX7


title: renal allograft biopsy,  (U of A/Chicago) 232A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 200A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 205A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 1A9AGX7


title: renal allograft biopsy,  (U of A/Chicago) 16A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 190A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 171A6AGX7


title: renal allograft biopsy,  (U of A/Chicago) 169A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 1A11AGX7


title: renal allograft biopsy,  (U of A/Chicago) 166A6AGX7


title: renal allograft biopsy,  (U of A/Chicago) 180A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 193A10AGX7


title: renal allograft biopsy,  (U of A/Chicago) 185A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 165A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 162A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 168A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 156A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 193A9AGX7


title: renal allograft biopsy,  (U of A/Chicago) 164A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 206A6AGX7


title: renal allograft biopsy,  (U of A/Chicago) 193A8AGX7


title: renal allograft biopsy,  (U of A/Chicago) 163A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 193A7AGX7


title: renal allograft biopsy,  (U of A/Chicago) 166A5AGX8


title: renal allograft biopsy,  (U of A/Chicago) 1A10AGX7


title: renal allograft biopsy,  (U of A/Chicago) 171A5AGX7


title: renal allograft biopsy,  (U of A/Chicago) 171A7AGX7


title: renal allograft biopsy,  (U of A/Chicago) 155A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 150A5AGX7


title: renal allograft biopsy,  (U of A/Chicago) 204A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 148A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 116A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 126A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 157A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 120A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 144A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 135A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 146A2AGX8


title: renal allograft biopsy,  (U of A/Chicago) 142A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 130A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 120A5AGX7


title: renal allograft biopsy,  (U of A/Chicago) 139A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 126A5AGX7


title: renal allograft biopsy,  (U of A/Chicago) 124A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 145A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 115A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 143A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 134A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 113A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 110A1AGX7


title: renal allograft biopsy,  (U of A/Chicago) 128A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 150A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 129A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 140A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 152A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 111A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 110A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 120A6AGX8


title: renal allograft biopsy,  (U of A/Chicago) 145A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 109A2AGX7


title: renal allograft biopsy,  (U of A/Chicago) 100A4AGX7


title: renal allograft biopsy,  (U of A/Chicago) 103A3AGX7


title: renal allograft biopsy,  (U of A/Chicago) 108A6AGX7


title: renal allograft biopsy,  (U of A/Chicago) 106A2AGX7


title: HumanAorticEndothelialCells_Individual121_OxPAPCTreatment_replicate1

status: Public on Mar 03 2010

city: La Jolla

first: Casey

last: Romanoski

state: CA

address: 9500 Gliman Dr.

country: USA

institute: UCSD

description: OxPAPC

hyb_protocol: According to Affymetrix standard protocol

data_processing: Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R

source_name: HumanAorticEndothelialCells

growth_protocol: Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2

extract_protocol: Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen

treatment_protocol: Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC

tag: agent

value: OxPAPC

tag: individual id

tag: batch

tag: gender

value: Male

tag: replicate


title: HumanAorticEndothelialCells_Individual121_controlTreatment_replicate2

description: control

scan_protocol: According to Affymetrix standard protocol

value: control


title: HumanAorticEndothelialCells_Individual121_OxPAPCTreatment_replicate4

description: OxPAPC

label_protocol: According to Affymetrix standard protocol


title: HumanAorticEndothelialCells_Individual120_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual121_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual118_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual118_OxPAPCTreatment_replicate3

description: OxPAPC


title: HumanAorticEndothelialCells_Individual120_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual120_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual120_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual119_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual120_OxPAPCTreatment_replicate3

description: OxPAPC


title: HumanAorticEndothelialCells_Individual119_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual119_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual118_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual119_OxPAPCTreatment_replicate3

description: OxPAPC


title: HumanAorticEndothelialCells_Individual119_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual117_OxPAPCTreatment_replicate1

description: OxPAPC

value: Female


title: renal allograft biopsy,  (U of A/Chicago) 105A2AGX7


title: HumanAorticEndothelialCells_Individual117_OxPAPCTreatment_replicate4

description: OxPAPC


title: HumanAorticEndothelialCells_Individual117_OxPAPCTreatment_replicate3

description: OxPAPC


title: HumanAorticEndothelialCells_Individual118_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual121_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual120_OxPAPCTreatment_replicate4

description: OxPAPC


title: HumanAorticEndothelialCells_Individual117_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual118_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual119_OxPAPCTreatment_replicate4

description: OxPAPC


title: HumanAorticEndothelialCells_Individual116_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual117_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual117_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual116_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual114_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual116_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual115_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual114_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual115_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual115_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual114_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual113_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual114_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual116_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual115_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual113_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual110_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual108_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual113_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual113_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual111_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual110_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual110_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual107_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual111_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual111_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual108_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual108_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual111_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual110_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual108_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual107_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual107_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual106_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual106_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual107_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual121_OxPAPCTreatment_replicate3

description: OxPAPC


title: HumanAorticEndothelialCells_Individual106_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual104_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual104_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual105_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual103_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual106_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual105_OxPAPCTreatment_replicate1

description: OxPAPC


title: renal allograft biopsy,  (U of A/Chicago) 104A2AGX7


title: HumanAorticEndothelialCells_Individual104_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual102_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual103_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual103_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual101_controlTreatment_replicate2

description: control


title: renal allograft biopsy,  (U of A/Chicago) 101A3AGX7


title: HumanAorticEndothelialCells_Individual101_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual103_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual102_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual100_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual105_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual100_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual102_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual104_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual102_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual101_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual100_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual101_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual99_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual99_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual100_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual98_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual99_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual97_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual98_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual97_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual99_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual98_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual98_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual97_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual96_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual96_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual93_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual96_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual93_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual96_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual93_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual95_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual95_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual97_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual93_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual92_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual91_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual95_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual92_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual91_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual92_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual95_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual89_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual90_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual92_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual90_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual91_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual90_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual89_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual88_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual88_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual90_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual91_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual86_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual88_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual86_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual84_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual86_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual84_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual87_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual87_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual89_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual87_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual85_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual89_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual84_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual83_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual88_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual86_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual71_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual83_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual85_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual71_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual71_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual85_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual71_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual87_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual70_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual83_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual84_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual70_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual70_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual83_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual70_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual68_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual69_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual68_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual65_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual69_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual68_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual66_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual69_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual66_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual64_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual65_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual65_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual69_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual64_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual63_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual66_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual64_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual64_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual62_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual63_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual62_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual63_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual68_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual66_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual62_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual61_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual61_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual63_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual61_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual62_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual60_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual57_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual60_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual57_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual57_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual61_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual54_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual57_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual55_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual53_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual55_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual60_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual56_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual56_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual54_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual60_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual56_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual55_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual52_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual54_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual52_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual53_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual53_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual55_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual54_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual56_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual52_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual53_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual52_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual51_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual51_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual51_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual51_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual50_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual49_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual48_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual47_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual47_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual47_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual49_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual50_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual49_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual45_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual47_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual48_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual45_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual45_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual45_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual50_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual46_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual48_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual46_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual49_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual65_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual41_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual38_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual43_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual44_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual37_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual41_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual44_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual38_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual46_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual39_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual43_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual43_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual42_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual35_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual41_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual38_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual35_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual37_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual38_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual41_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual35_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual43_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual35_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual34_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual37_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual37_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual39_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual34_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual34_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual42_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual39_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual33_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual46_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual44_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual31_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual48_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual50_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual32_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual44_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual33_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual42_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual31_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual32_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual39_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual34_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual32_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual33_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual31_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual33_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual31_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual30_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual30_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual30_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual29_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual30_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual28_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual28_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual25_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual28_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual28_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual29_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual29_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual26_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual26_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual29_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual27_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual24_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual24_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual25_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual24_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual27_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual25_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual27_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual27_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual25_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual21_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual21_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual22_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual22_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual26_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual21_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual20_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual24_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual21_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual20_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual20_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual20_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual19_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual18_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual18_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual19_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual18_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual19_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual15_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual19_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual17_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual14_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual15_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual15_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual17_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual17_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual13_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual12_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual15_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual18_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual12_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual17_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual14_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual14_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual12_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual13_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual14_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual10_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual12_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual10_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual10_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual9_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual10_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual7_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual13_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual9_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual7_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual7_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual7_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual6_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual6_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual5_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual5_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual9_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual5_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual6_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual6_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual9_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual4_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual5_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual4_OxPAPCTreatment_replicate1

description: OxPAPC


title: HumanAorticEndothelialCells_Individual4_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual2_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual2_controlTreatment_replicate2

description: control


title: HumanAorticEndothelialCells_Individual2_OxPAPCTreatment_replicate2

description: OxPAPC


title: HumanAorticEndothelialCells_Individual4_controlTreatment_replicate1

description: control


title: HumanAorticEndothelialCells_Individual2_OxPAPCTreatment_replicate1

description: OxPAPC


title: 15 min GSNO exposure array 2

status: Public on Feb 17 2007

city: Norwich

first: Bruce

middle: MacKenzie

last: Pearson

state: Norfolk

address: Colney Lane

department: Food Safety

country: United Kingdom

institute: Institute of Food Research

description: Equal quantities of RNA from control and GSNO treated cultures were labelled by using nucleotide homologues of dCTP containing either Cy5 for control or Cy3 fluorescent dye for test samples (Perkin Elmer).

hyb_protocol: The mixture was put onto the microarray slide, sealed with a coverslip in a hybridization chamber and incubated for 18 h at 63 °C. Following hybridization, microarray slides were washed briefly in pre-warmed (60 °C) 1x SSC/0.03 % SDS to remove the coverslip and then washed twice for 5 min in each of the following buffers: a) 1x SSC/0.03 % SDS (pre-warmed to 60 °C), b) 0.2x SSC and finally c) 0.05x SSC. Microarray slides were dried by centrifugation at 300 x g for 15 min before scanning.

scan_protocol: Microarrays were scanned using an Axon 4000A scanner and images were acquired using GenePixPro 3.0 software (Axon).

data_processing:
All microarray data were filtered to remove poor-quality data using four sequential cut-off values (Mark Reuter, IFR, personal communication). All data values were from features above 50 µm in diameter, with sum of medians above 50, regression coefficient squared values above 0.2 and with a sum of the signal : noise ratio greater than 3.
Data was block median normalized prior to analysis.

organism: Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

source_name: Batch cultured control sample in the absence of GSNO

label_protocol: Sample was labelled with Cy5-dCTP. RNA (15 µg) was primed with 5 µg pd(N)6 random hexamers (Amersham Biosciences) and made to 12.4 µl total volume with water and supplemented on ice with 3 µl 10x RT buffer (Invitrogen), 0.6 µl 50x dNTPs mixture (25 mM each dATP, dTTP, dGTP and 10 mM dCTP), 3 µl 0.1 M DTT, 2 µl 1mM Cy3 or Cy5 (Perkin Elmer), and 200U Superscript II RNase H reverse transcriptase (Invitrogen). Incubation was  at 37 °C overnight. Labelled cDNA was purified using a Qiaquick purification kit (Qiagen) and dried before being resuspended in 19.5 µl water, 2.25 µl human Cot1 DNA (Invitrogen), 4.5 µl 20x SSC, 0.72 µl 1 M HEPES, pH 7.0, 0.68 µl 10 % SDS and 3 µl Denhardt solution. Samples were heated for 3 min in a boiling water bath, cooled at room temperature for 5 min and centrifuged at maximum speed in a microfuge for 2 min to remove particulates.

extract_protocol: 30 ml samples mixed immediately on ice with 3.56 ml 100% ethanol and 185 µl phenol to stabilize the RNA. The cells were subsequently harvested by centrifugation. Total RNA was purified by using a Qiagen RNeasy Mini kit as recommended by the supplier.

tag: RNA isolated from batch culture of NCTC 11168 in exponential phase without exposure to GSNO

source_name: Batch cultured experiment samples in the presence of  0.25 mM GSNO

label_protocol: Sample was labelled with Cy3-dCTP. RNA (15 µg) was primed with 5 µg pd(N)6 random hexamers (Amersham Biosciences) and made to 12.4 µl total volume with water and supplemented on ice with 3 µl 10x RT buffer (Invitrogen), 0.6 µl 50x dNTPs mixture (25 mM each dATP, dTTP, dGTP and 10 mM dCTP), 3 µl 0.1 M DTT, 2 µl 1mM Cy3 or Cy5 (Perkin Elmer), and 200U Superscript II RNase H reverse transcriptase (Invitrogen). Incubation was  at 37 °C overnight. Labelled cDNA was purified using a Qiaquick purification kit (Qiagen) and dried before being resuspended in 19.5 µl water, 2.25 µl human Cot1 DNA (Invitrogen), 4.5 µl 20x SSC, 0.72 µl 1 M HEPES, pH 7.0, 0.68 µl 10 % SDS and 3 µl Denhardt solution. Samples were heated for 3 min in a boiling water bath, cooled at room temperature for 5 min and centrifuged at maximum speed in a microfuge for 2 min to remove particulates.

growth_protocol: Batch cultures of Wild-type C. jejuni NCTC 11168 were grown in 150 ml volumes of Mueller-Hinton broth in 250 ml baffled flasks. Microaerophilic conditions were generated using a MACS-VA500 microaerophilic work station (10 % Oxygen, 10 % Carbon dioxide, 80 % Nitrogen) from Don Whitley Scientific, Ltd which also maintained the growth temperature at 42 ºC. When mid-exponential phase was reached  GSNO was added to 0.25 mM and exposure given for 15 minutes.

tag: RNA isolated from batch culture of NCTC 11168 in exponential phase with 15 minute exposure to 0.25mM GSNO


title: without GSNO exposure array 2

growth_protocol: Batch cultures of Wild-type C. jejuni NCTC 11168 were grown in 150 ml volumes of Mueller-Hinton broth in 250 ml baffled flasks. Microaerophilic conditions were generated using a MACS-VA500 microaerophilic work station (10 % Oxygen, 10 % Carbon dioxide, 80 % Nitrogen) from Don Whitley Scientific, Ltd which also maintained the growth temperature at 42 ºC.


title: 45 min GSNO exposure array 1

growth_protocol: Batch cultures of Wild-type C. jejuni NCTC 11168 were grown in 150 ml volumes of Mueller-Hinton broth in 250 ml baffled flasks. Microaerophilic conditions were generated using a MACS-VA500 microaerophilic work station (10 % Oxygen, 10 % Carbon dioxide, 80 % Nitrogen) from Don Whitley Scientific, Ltd which also maintained the growth temperature at 42 ºC. When mid-exponential phase was reached  GSNO was added to 0.25 mM and exposure given for 45 minutes.

tag: RNA isolated from batch culture of NCTC 11168 in exponential phase with 45 minute exposure to 0.25mM GSNO


title: 45 min GSNO exposure array 2


title: AML 7069

status: Public on Mar 12 2008

city: Houston

first: Roel

last: Verhaak

state: TX

address: 1400 Pressler St

department: Bioinformatics and Comp Bio

institute: MD Anderson Cancer Center

description:
Blasts and mononuclear cells were purified from bone marrow or peripheral blood aspirates of AML patients. Samples contained 80-100 percent blast cells.

The CEL file for this Sample is not available.

hyb_protocol: Affymetrix protocol.

scan_protocol: Affymetrix protocol.

data_processing: MAS5 with global scaling to target value 100, followed by setting all values lower than 30 at 30, and then log2 transformation.

source_name: Blasts and mononuclear cells, AML patient

label_protocol: Affymetrix protocol.

extract_protocol: Total RNA was extracted by lysis with guanidium isothiocyanate followed by cesium chloride gradient purification.

tag: disease state

value: Acute myeloid leukemia

tag: cell type

value: blasts and mononuclear cells

value: male

tag: age

value: 61 years

tag: score

value: FAB M2

tag: risk

value: cytogenetic poor

tag: cebpa

value: wilde type

tag: karyotype

value: Neg

tag: flt3 itd mutation

tag: flt3 tkd mutation

tag: n-ras mutation

tag: k-ras mutation

tag: evi1 expression

tag: cebpa mutation

value: neg


title: without GSNO exposure array 1

description: Equal quantities of RNA from two control  treated cultures were labelled by using nucleotide homologues of dCTP containing either Cy5 for control channel 1 or Cy3 fluorescent dye for test channel 2 samples (Perkin Elmer).

treatment_protocol: 30 ml samples mixed immediately on ice with 3.56 ml 100% ethanol and 185 µl phenol to stabilize the RNA. The cells were subsequently harvested by centrifugation. Total RNA was purified by using a Qiagen RNeasy Mini kit as recommended by the supplier.


title: 15 min GSNO exposure array 1


title: 5 min GSNO exposure array 1

growth_protocol: Batch cultures of Wild-type C. jejuni NCTC 11168 were grown in 150 ml volumes of Mueller-Hinton broth in 250 ml baffled flasks. Microaerophilic conditions were generated using a MACS-VA500 microaerophilic work station (10 % Oxygen, 10 % Carbon dioxide, 80 % Nitrogen) from Don Whitley Scientific, Ltd which also maintained the growth temperature at 42 ºC. When mid-exponential phase was reached  GSNO was added to 0.25 mM and exposure given for 5 minutes.

tag: RNA isolated from batch culture of NCTC 11168 in exponential phase with 5 minute exposure to 0.25mM GSNO


title: 5 min GSNO exposure array 2

tag: RNA isolated from batch culture of NCTC 11168 in exponential phase without exposure to GSNO